BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029325
MTSAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSA
GEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRS
ILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQS
SGNSFNQGGSSFAAT

High Scoring Gene Products

Symbol, full name Information P value
SHW1
AT1G69935 		protein from Arabidopsis thaliana 2.6e-15
AT4G33780 protein from Arabidopsis thaliana 2.9e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029325
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006215 - symbol:SHW1 "AT1G69935" species:37...   193  2.6e-15   1
TAIR|locus:2134268 - symbol:AT4G33780 "AT4G33780" species...   136  2.9e-09   1


>TAIR|locus:505006215 [details] [associations]
            symbol:SHW1 "AT1G69935" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0010100 "negative regulation of photomorphogenesis"
            evidence=IMP] EMBL:CP002684 GO:GO:0005634 GO:GO:0010100
            IPI:IPI00547215 RefSeq:NP_564981.1 UniGene:At.35361
            EnsemblPlants:AT1G69935.1 GeneID:843330 KEGG:ath:AT1G69935
            OMA:INASHRF Uniprot:F4I3V6
        Length = 192

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 56/175 (32%), Positives = 83/175 (47%)

Query:     3 SAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGE 62
             S+++ SP + +  +S +    +P  ++N  F   R    N++L+  S  H++  Y S  +
Sbjct:     9 SSSSSSPSLTLINASHRFVSVTPF-SSNSIFLRRRFRRLNRSLASSS-SHSRRRYES--D 64

Query:    63 DPDEIGEAFFDEGVDGGAIMXXXXXXXXXXXXXXXLLIRFLQATFXXXXXXXXXXXXXIL 122
             D    G   +D   D                    LLIRFL++ F             IL
Sbjct:    65 DRFFGGGDNYDVVPDDDGF-SDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRIL 123

Query:   123 PAAISPKLVSFAVDGXXXXXXXXXXXXXXEVVCSIGGTVFVLILLLRFIWAAISY 177
             PAA+SP+LVSFAVDG              EV+C++GGTVF +ILL+R  WAA S+
Sbjct:   124 PAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASF 178


>TAIR|locus:2134268 [details] [associations]
            symbol:AT4G33780 "AT4G33780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 EMBL:AY086625 EMBL:BT001936
            IPI:IPI00536906 RefSeq:NP_567935.3 UniGene:At.19838 PaxDb:Q8LCF7
            EnsemblPlants:AT4G33780.1 GeneID:829520 KEGG:ath:AT4G33780
            TAIR:At4g33780 eggNOG:NOG301434 HOGENOM:HOG000148663
            InParanoid:Q8LCF7 OMA:TKLVGFS PhylomeDB:Q8LCF7
            ProtClustDB:CLSN2680243 Genevestigator:Q8LCF7 Uniprot:Q8LCF7
        Length = 203

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query:    98 LLIRFLQATFXXXXXXXXXXXXXILPAAISPKLVSFAVDGXXXXXXXXXXXXXXEVVCSI 157
             LL+RF++  F             ILP +IS KLV F+V+G              EV C++
Sbjct:    98 LLLRFVENVFRKISKRARKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTL 157

Query:   158 GGTVFVLILLLRFIWAAISY 177
             G  VF  ILL+R +WA ++Y
Sbjct:   158 GTIVFTSILLIRGLWAGVAY 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       138   0.00091  102 3  11 22  0.39    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.65u 0.17s 11.82t   Elapsed:  00:00:01
  Total cpu time:  11.65u 0.17s 11.82t   Elapsed:  00:00:01
  Start:  Fri May 10 15:33:27 2013   End:  Fri May 10 15:33:28 2013

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