Query 029325
Match_columns 195
No_of_seqs 22 out of 24
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 18:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029325.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029325hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pv4a1 a.286.1.1 (A:1-144) Un 46.1 5.2 0.00038 30.4 2.4 31 89-119 100-130 (144)
2 d1o26a_ d.207.1.1 (A:) Thy1 ho 31.6 25 0.0018 26.3 4.2 23 113-136 143-165 (219)
3 d1izma_ a.199.1.1 (A:) Hypothe 17.3 25 0.0018 25.6 1.6 18 87-104 142-159 (170)
4 d1izna_ e.43.1.1 (A:) Capz alp 16.8 34 0.0025 27.1 2.5 23 103-125 237-259 (275)
5 d1dxxa1 a.40.1.1 (A:9-119) Dys 14.9 41 0.003 22.0 2.1 14 166-179 98-111 (111)
6 d1mr1c_ d.217.1.2 (C:) SMAD4-b 14.1 19 0.0014 25.5 0.2 27 31-57 37-63 (97)
7 d1xi6a_ e.7.1.1 (A:) Archaeal 12.9 91 0.0066 22.5 3.8 55 100-154 2-57 (249)
8 d1tzyb_ a.22.1.1 (B:) Histone 12.8 1E+02 0.0074 20.9 3.8 24 93-116 24-47 (92)
9 d3bc8a1 c.67.1.9 (A:23-467) Se 12.7 59 0.0043 24.4 2.8 22 95-116 424-445 (445)
10 d1vqoj1 c.21.1.1 (J:4-145) Rib 11.8 31 0.0023 25.1 0.8 9 115-123 77-85 (142)
No 1
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=46.10 E-value=5.2 Score=30.45 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 029325 89 EDDMDSSVDLLIRFLQATFKKVSKRAKKASR 119 (195)
Q Consensus 89 ede~d~SlDLLvrFl~s~fkKvSkRArKA~R 119 (195)
|..|+----++-|.+++.+|...|.-|||=|
T Consensus 100 e~~e~e~~~~~~rl~~~~lKd~~KqLKKAR~ 130 (144)
T d2pv4a1 100 AIAEQEYSGLYVRVAEAALKESVKKLKKART 130 (144)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333334468999999999999999999865
No 2
>d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId: 2336]}
Probab=31.57 E-value=25 Score=26.27 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=17.9
Q ss_pred HHHHhhhhccCCccCcceeeEeeh
Q 029325 113 RAKKASRSILPAAISPKLVSFAVD 136 (195)
Q Consensus 113 RArKA~RsvLP~~is~~LV~FsVn 136 (195)
.|+..||.|||..+-+++| +++|
T Consensus 143 va~E~AR~vLP~~~~T~~~-~t~N 165 (219)
T d1o26a_ 143 VPREVARIVLPLNLYTRFF-WTVN 165 (219)
T ss_dssp CCHHHHGGGSBTTBEEEEE-EEEE
T ss_pred CChhhHHHHhhcccceEEE-EEec
Confidence 4578999999999988875 3444
No 3
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus influenzae [TaxId: 727]}
Probab=17.31 E-value=25 Score=25.61 Aligned_cols=18 Identities=17% Similarity=0.685 Sum_probs=13.1
Q ss_pred CCCcccchhHHHHHHHHH
Q 029325 87 DDEDDMDSSVDLLIRFLQ 104 (195)
Q Consensus 87 ddede~d~SlDLLvrFl~ 104 (195)
||+||.++++-=++.|++
T Consensus 142 d~~ee~E~~~~Ei~EyvR 159 (170)
T d1izma_ 142 DNEEELAEALEEIIEYVR 159 (170)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 344566788888888886
No 4
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.81 E-value=34 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhccCCc
Q 029325 103 LQATFKKVSKRAKKASRSILPAA 125 (195)
Q Consensus 103 l~s~fkKvSkRArKA~RsvLP~~ 125 (195)
|...|..+|..+=|+.|..||.-
T Consensus 237 l~e~f~~ls~~~FK~LRR~LPVT 259 (275)
T d1izna_ 237 ISENYQTMSDTTFKALRRQLPVT 259 (275)
T ss_dssp HHHHHHHHHHTHHHHHSCSSCTT
T ss_pred HHHHHHHhCHHHHHHHHhhCCcC
Confidence 45568999999999999999964
No 5
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=41 Score=21.99 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 029325 166 LLLRFIWAAISYFQ 179 (195)
Q Consensus 166 Ll~R~iWs~vsy~q 179 (195)
+.++++|+.+.++|
T Consensus 98 ~iL~llw~l~~~yq 111 (111)
T d1dxxa1 98 LTLGLIWNIILHWQ 111 (111)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 45688999988887
No 6
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.15 E-value=19 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.4
Q ss_pred cccccCCcccccccCCcceeecccccC
Q 029325 31 LSFHHNRHTNHNKTLSELSICHAQLNY 57 (195)
Q Consensus 31 ~~f~hq~f~~~~~~~~~~~~~h~~l~~ 57 (195)
+-|++|.|-.|.+|.++.-+||=.+++
T Consensus 37 ~~FsP~kFv~HsHr~~e~~tchwgfDS 63 (97)
T d1mr1c_ 37 LMYPPHKFVVHSHKALENRTCHWGFDS 63 (97)
T ss_dssp CEECHHHHTTCCCSCCCSSEEEESCCG
T ss_pred CEeCccceEEecccCCCCccccCCCCh
Confidence 358999999999998999999988874
No 7
>d1xi6a_ e.7.1.1 (A:) Archaeal inositol monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=12.94 E-value=91 Score=22.51 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCccCcceeeEeehhHHH-HHHHHHHHHHHHHH
Q 029325 100 IRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILL-LASLSILKALLEVV 154 (195)
Q Consensus 100 vrFl~s~fkKvSkRArKA~RsvLP~~is~~LV~FsVnGvll-La~L~ilKAlLEVv 154 (195)
++|.+.+..+++++|.++++...=..=..+.+...-+|=.+ -+=+.+=+.+.|.+
T Consensus 2 ~~~~~e~a~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~d~vt~aD~~ae~~i~~~L 57 (249)
T d1xi6a_ 2 LKFWREVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRI 57 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGTTCGGGGCCCC---------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCcccCceEEecCCCCcchHHHHHHHHHHHHHH
Confidence 47888999999998888887776544455567777776332 22233334444443
No 8
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=12.77 E-value=1e+02 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 029325 93 DSSVDLLIRFLQATFKKVSKRAKK 116 (195)
Q Consensus 93 d~SlDLLvrFl~s~fkKvSkRArK 116 (195)
..+++.+-.|+..+|.+++..|-+
T Consensus 24 ~kam~imnsfvndiferIa~EA~~ 47 (92)
T d1tzyb_ 24 SKAMGIMNSFVNDIFERIAGEASR 47 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999876643
No 9
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.73 E-value=59 Score=24.40 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029325 95 SVDLLIRFLQATFKKVSKRAKK 116 (195)
Q Consensus 95 SlDLLvrFl~s~fkKvSkRArK 116 (195)
-+|.++.-|..++|++.|+-+|
T Consensus 424 DID~~v~~L~kilk~~rk~~~k 445 (445)
T d3bc8a1 424 DVDLFIKRLDKCLNIVRKEQTR 445 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 3899999999999998887665
No 10
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=11.83 E-value=31 Score=25.13 Aligned_cols=9 Identities=44% Similarity=0.885 Sum_probs=0.0
Q ss_pred HHhhhhccC
Q 029325 115 KKASRSILP 123 (195)
Q Consensus 115 rKA~RsvLP 123 (195)
++|+|.|||
T Consensus 77 ~raVrGMLP 85 (142)
T d1vqoj1 77 KRTIRGMLP 85 (142)
T ss_dssp HHHHHTTTT
T ss_pred HHHHhCcCC
Done!