BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029327
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
          Length = 770

 Score = 33.5 bits (75), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 42  ITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFV--IGRSANHGDSFDTEID---S 96
           I      +N+  I   W   G   R    N  ++ R    I R+    D  + + D   S
Sbjct: 48  IAAINEGQNKPEIEVTWAKQGRTERLCSQNPPVLKRHQREITRTTLQSDQEEIDYDDTIS 107

Query: 97  ENSQTNDFIILD-DHVEAPEELAKKMKSFFVHAVEK-WD 133
              +  DF I D D  ++P    KK + +F+ AVE+ WD
Sbjct: 108 VEMKKEDFDIYDEDENQSPRSFQKKTRHYFIAAVERLWD 146


>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
          Length = 684

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 85  NHGDSFDTEIDSENSQTNDFIILD-DHVEAPEELAKKMKSFFVHAVEK-WD 133
           ++ D+   E+  E     DF I D D  ++P    KK + +F+ AVE+ WD
Sbjct: 15  DYDDTISVEMKKE-----DFDIYDEDENQSPRSFQKKTRHYFIAAVERLWD 60


>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
           From Staphylococcus Aureus Complexed With Adp
 pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
           From Staphylococcus Aureus Complexed With Adp
 pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
           From Staphylococcus Aureus
 pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
           From Staphylococcus Aureus
          Length = 377

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 107 LDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVN 147
           +D   EA E++ K ++S  +H +  +  EF+   N+ +YVN
Sbjct: 231 IDKTAEAKEQVNKIIQS--IHFIGTFTVEFFIDSNNQLYVN 269


>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
 pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
 pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
          Length = 191

 Score = 26.9 bits (58), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 46  GRKKNRDAIREAWMSTGA-------ALRELQDNKGIV-VRFVIG--RSANHGDSFDTEID 95
           G+K    ++RE  + +G         L  L DN+ I+ +R V G  R  N+  +     +
Sbjct: 66  GKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSE 125

Query: 96  SENSQTNDFIILDDHVEAPEELAKKMKSFFVHAV 129
           + + +T    I    V+ PE   K+   FFV A+
Sbjct: 126 TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEAL 159


>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
          Length = 183

 Score = 26.6 bits (57), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 46  GRKKNRDAIREAWMSTGA-------ALRELQDNKGIV-VRFVIG--RSANHGDSFDTEID 95
           G+K    ++RE  + +G         L  L DN+ I+ +R V G  R  N+  +     +
Sbjct: 66  GKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSE 125

Query: 96  SENSQTNDFIILDDHVEAPEELAKKMKSFFVHAV 129
           + + +T    I    V+ PE   K+   FFV A+
Sbjct: 126 TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEAL 159


>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
           Abscisic Acid (Aba)
 pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
           Abscisic Acid (Aba)
          Length = 183

 Score = 26.6 bits (57), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 46  GRKKNRDAIREAWMSTGA-------ALRELQDNKGIV-VRFVIG--RSANHGDSFDTEID 95
           G+K    ++RE  + +G         L  L DN+ I+ +R V G  R  N+  +     +
Sbjct: 66  GKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSE 125

Query: 96  SENSQTNDFIILDDHVEAPEELAKKMKSFFVHAV 129
           + + +T    I    V+ PE   K+   FFV A+
Sbjct: 126 TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEAL 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,229,411
Number of Sequences: 62578
Number of extensions: 255154
Number of successful extensions: 585
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 10
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)