Query 029327
Match_columns 195
No_of_seqs 171 out of 1080
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2E-47 4.3E-52 337.8 17.8 191 2-193 100-296 (408)
2 KOG2287 Galactosyltransferases 100.0 5.4E-39 1.2E-43 283.0 14.6 153 33-193 93-248 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 6.8E-39 1.5E-43 297.4 15.6 151 31-189 381-532 (636)
4 KOG2288 Galactosyltransferases 100.0 7.1E-38 1.5E-42 260.4 13.6 160 32-193 8-167 (274)
5 PF01762 Galactosyl_T: Galacto 100.0 1.6E-36 3.4E-41 246.5 11.0 139 49-194 1-143 (195)
6 PTZ00210 UDP-GlcNAc-dependent 99.9 7.5E-27 1.6E-31 204.6 11.5 148 30-179 75-245 (382)
7 KOG2246 Galactosyltransferases 99.3 3.2E-12 6.9E-17 113.5 8.8 117 28-168 84-203 (364)
8 PF02434 Fringe: Fringe-like; 99.3 2.7E-12 5.9E-17 108.8 7.0 116 35-170 6-123 (252)
9 PLN03153 hypothetical protein; 97.5 0.001 2.2E-08 61.6 10.7 36 133-168 210-245 (537)
10 KOG3708 Uncharacterized conser 93.0 0.15 3.3E-06 47.5 4.7 50 119-168 81-132 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 92.6 1.2 2.7E-05 35.5 9.2 106 36-158 2-111 (228)
12 PRK11204 N-glycosyltransferase 88.8 12 0.00025 33.4 12.6 108 33-158 52-159 (420)
13 cd04192 GT_2_like_e Subfamily 88.3 10 0.00022 29.8 10.9 78 74-158 29-107 (229)
14 TIGR03472 HpnI hopanoid biosyn 87.2 21 0.00045 31.6 13.2 110 34-158 40-151 (373)
15 TIGR03469 HonB hopene-associat 86.3 18 0.00039 32.1 12.3 114 33-158 38-158 (384)
16 PRK14583 hmsR N-glycosyltransf 84.7 29 0.00064 31.4 13.1 107 34-158 74-180 (444)
17 cd02525 Succinoglycan_BP_ExoA 81.8 24 0.00053 28.0 11.5 77 72-158 30-106 (249)
18 PF00535 Glycos_transf_2: Glyc 77.1 25 0.00055 25.5 10.5 87 73-168 27-114 (169)
19 cd04186 GT_2_like_c Subfamily 75.5 29 0.00063 25.4 9.2 28 131-158 72-99 (166)
20 COG4092 Predicted glycosyltran 75.4 11 0.00024 32.9 6.5 98 47-156 18-117 (346)
21 cd06439 CESA_like_1 CESA_like_ 75.2 42 0.0009 27.0 12.3 110 32-159 26-135 (251)
22 cd04187 DPM1_like_bac Bacteria 74.4 36 0.00078 25.9 10.2 87 73-168 29-115 (181)
23 cd04185 GT_2_like_b Subfamily 72.3 43 0.00094 25.9 10.0 37 121-158 68-104 (202)
24 cd06435 CESA_NdvC_like NdvC_li 70.6 32 0.00068 27.5 8.1 37 123-159 72-110 (236)
25 cd06423 CESA_like CESA_like is 69.8 39 0.00084 24.4 9.5 36 123-158 68-103 (180)
26 cd06434 GT2_HAS Hyaluronan syn 69.2 55 0.0012 25.9 11.9 76 73-159 28-103 (235)
27 PF07507 WavE: WavE lipopolysa 69.2 7.8 0.00017 34.1 4.4 71 118-192 84-162 (311)
28 PRK05454 glucosyltransferase M 67.3 1E+02 0.0022 30.2 11.8 129 31-170 120-255 (691)
29 cd04188 DPG_synthase DPG_synth 66.9 43 0.00094 26.3 8.1 89 72-168 29-118 (211)
30 cd04179 DPM_DPG-synthase_like 65.8 38 0.00082 25.6 7.3 87 73-168 28-115 (185)
31 cd06427 CESA_like_2 CESA_like_ 65.7 70 0.0015 25.8 12.0 37 123-159 74-110 (241)
32 TIGR03111 glyc2_xrt_Gpos1 puta 65.4 1.1E+02 0.0023 27.8 12.1 110 34-159 48-157 (439)
33 cd02520 Glucosylceramide_synth 64.3 66 0.0014 25.0 11.9 79 74-158 31-111 (196)
34 cd02510 pp-GalNAc-T pp-GalNAc- 63.0 89 0.0019 26.2 9.7 35 124-158 74-108 (299)
35 PF04666 Glyco_transf_54: N-Ac 61.4 31 0.00067 30.1 6.6 143 31-178 48-220 (297)
36 PLN02726 dolichyl-phosphate be 61.4 87 0.0019 25.4 11.5 87 73-168 40-129 (243)
37 cd06442 DPM1_like DPM1_like re 59.5 68 0.0015 25.0 8.0 42 127-168 72-114 (224)
38 PF13506 Glyco_transf_21: Glyc 58.7 36 0.00079 26.9 6.1 42 118-159 16-57 (175)
39 cd04184 GT2_RfbC_Mx_like Myxoc 56.8 87 0.0019 24.0 11.2 35 124-158 74-108 (202)
40 cd04191 Glucan_BSP_ModH Glucan 56.7 64 0.0014 27.1 7.6 110 39-159 3-121 (254)
41 cd04195 GT2_AmsE_like GT2_AmsE 55.3 93 0.002 23.8 10.5 35 124-158 71-105 (201)
42 PF13704 Glyco_tranf_2_4: Glyc 52.4 74 0.0016 21.9 6.4 41 109-150 47-88 (97)
43 cd06913 beta3GnTL1_like Beta 1 52.0 1.2E+02 0.0025 23.9 9.5 43 126-168 77-119 (219)
44 cd06433 GT_2_WfgS_like WfgS an 50.9 38 0.00081 25.7 5.0 46 123-168 65-112 (202)
45 cd04196 GT_2_like_d Subfamily 50.0 1.2E+02 0.0025 23.3 11.5 92 52-157 11-103 (214)
46 cd06421 CESA_CelA_like CESA_Ce 48.2 1.3E+02 0.0029 23.5 11.2 36 125-160 76-111 (234)
47 cd06438 EpsO_like EpsO protein 47.3 1.3E+02 0.0027 23.0 10.9 47 123-169 70-117 (183)
48 cd06420 GT2_Chondriotin_Pol_N 46.5 42 0.0009 25.4 4.6 35 124-158 70-104 (182)
49 cd06437 CESA_CaSu_A2 Cellulose 45.9 1.5E+02 0.0033 23.5 11.5 34 124-157 78-111 (232)
50 PRK10714 undecaprenyl phosphat 40.8 2.4E+02 0.0052 24.4 11.7 88 72-168 37-125 (325)
51 PRK10018 putative glycosyl tra 40.3 2.3E+02 0.005 24.1 9.5 34 125-158 77-110 (279)
52 TIGR01556 rhamnosyltran L-rham 38.9 41 0.00088 28.0 3.7 35 123-158 64-98 (281)
53 cd00761 Glyco_tranf_GTA_type G 36.3 54 0.0012 22.9 3.6 35 123-157 67-101 (156)
54 cd02514 GT13_GLCNAC-TI GT13_GL 35.9 77 0.0017 28.2 5.0 43 124-166 88-133 (334)
55 cd02522 GT_2_like_a GT_2_like_ 35.7 83 0.0018 24.5 4.9 37 125-161 64-100 (221)
56 KOG2859 DNA repair protein, me 35.1 78 0.0017 27.1 4.6 52 101-158 37-96 (293)
57 COG5454 Predicted secreted pro 34.0 25 0.00055 25.0 1.3 28 33-61 33-61 (89)
58 KOG2547 Ceramide glucosyltrans 33.7 59 0.0013 29.6 4.0 81 73-160 114-197 (431)
59 PF09258 Glyco_transf_64: Glyc 33.6 42 0.00091 28.3 2.9 38 132-169 74-111 (247)
60 PF03490 Varsurf_PPLC: Variant 30.8 40 0.00088 21.6 1.8 27 56-85 9-35 (51)
61 TIGR03030 CelA cellulose synth 30.4 2.7E+02 0.0059 27.1 8.3 44 119-163 215-258 (713)
62 PF10111 Glyco_tranf_2_2: Glyc 30.2 3.3E+02 0.0071 22.8 11.7 79 71-156 32-111 (281)
63 cd02511 Beta4Glucosyltransfera 29.2 79 0.0017 25.5 3.8 35 123-157 61-95 (229)
64 cd02526 GT2_RfbF_like RfbF is 26.3 3.2E+02 0.0069 21.4 9.6 34 121-155 64-97 (237)
65 PF13712 Glyco_tranf_2_5: Glyc 26.2 84 0.0018 25.8 3.5 33 123-155 44-76 (217)
66 PF03295 Pox_TAA1: Poxvirus tr 25.1 1E+02 0.0022 20.6 3.0 27 144-170 22-48 (63)
67 cd06532 Glyco_transf_25 Glycos 23.0 3.1E+02 0.0067 20.1 7.0 92 39-149 2-98 (128)
68 KOG2571 Chitin synthase/hyalur 21.6 1.5E+02 0.0033 29.8 4.7 62 119-184 420-487 (862)
69 TIGR02148 Fibro_Slime fibro-sl 20.8 50 0.0011 23.8 1.0 17 134-150 20-36 (90)
70 COG1215 Glycosyltransferases, 20.8 5.7E+02 0.012 22.3 11.7 112 34-162 53-166 (439)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2e-47 Score=337.80 Aligned_cols=191 Identities=48% Similarity=0.848 Sum_probs=164.6
Q ss_pred ccchhhhhhHHHHhhcc--ccCCCCC----CCCCCCCCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceE
Q 029327 2 RLSAIEMDLAAARQEGF--VSGYLSQ----NDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIV 75 (195)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~ 75 (195)
++|..||++|+|++.++ .++..++ +.....+++++|+|+|+|+|+|++||++||+||++.+..+.+++...+++
T Consensus 100 ~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~ 179 (408)
T PLN03193 100 TISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGII 179 (408)
T ss_pred hhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEE
Confidence 68999999999999877 6664333 23445778899999999999999999999999999765444555568899
Q ss_pred EEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHH
Q 029327 76 VRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAAL 155 (195)
Q Consensus 76 ~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L 155 (195)
++||||.+.+.+..++..|++|+++|||||++ ||.|+|.|||+||+++|+|+.++|+++||||+|||+|||+++|+.+|
T Consensus 180 vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L 258 (408)
T PLN03193 180 IRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETL 258 (408)
T ss_pred EEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHH
Confidence 99999998754467888999999999999977 79999999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeecCcceeCCCCCccccCccccCCC
Q 029327 156 SSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDG 193 (195)
Q Consensus 156 ~~~~~~~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g~~ 193 (195)
..+...+++|+||++.+|+..+++.|||.|+||+||.+
T Consensus 259 ~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~ 296 (408)
T PLN03193 259 VRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGEN 296 (408)
T ss_pred HhcCCCCCEEEEecccCccccCCCCcCcCcccccccCc
Confidence 88766678999999876554445788899999999853
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-39 Score=283.02 Aligned_cols=153 Identities=23% Similarity=0.374 Sum_probs=137.8
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327 33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE 112 (195)
Q Consensus 33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D 112 (195)
..++++++|+|+++|++||++||+|||+... ..+..++++|++|.+++.+ .++..|.+|++.|||||+. ||.|
T Consensus 93 ~~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~D 165 (349)
T KOG2287|consen 93 RPPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFED 165 (349)
T ss_pred CCceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-eccc
Confidence 3589999999999999999999999999853 2467899999999988643 5578999999999999977 8999
Q ss_pred CCcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhcc-CCCCceEEEEe-ecCcceeCCCCCccccCccc
Q 029327 113 APEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSH-LDKPRVYIGCM-KSGEVFSEPTQRWYEPDWWK 189 (195)
Q Consensus 113 sY~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~-~~~~~ly~G~~-~~~~~~R~~~~Kwyvp~~~~ 189 (195)
+|.|||+||++++.|+.++| +++|++|+|||+|||+++|+.+|... .+.+.+|.|.+ .+.+|+|++.+|||||+. .
T Consensus 166 ty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~-~ 244 (349)
T KOG2287|consen 166 TYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES-E 244 (349)
T ss_pred chhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH-H
Confidence 99999999999999999999 79999999999999999999999998 78889999995 456999999999999987 5
Q ss_pred cCCC
Q 029327 190 FGDG 193 (195)
Q Consensus 190 ~g~~ 193 (195)
|..+
T Consensus 245 y~~~ 248 (349)
T KOG2287|consen 245 YPCS 248 (349)
T ss_pred CCCC
Confidence 5443
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=6.8e-39 Score=297.38 Aligned_cols=151 Identities=23% Similarity=0.347 Sum_probs=133.4
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCC
Q 029327 31 SKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH 110 (195)
Q Consensus 31 ~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df 110 (195)
+.++++|+|+|+|+|+|++||+|||+|||+... ..+..++++|++|.+.+ +.++..|.+|+++|||||+. ||
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF 452 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PF 452 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-ee
Confidence 356799999999999999999999999999642 12456999999999876 67888999999999999977 89
Q ss_pred ccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEee-cCcceeCCCCCccccCccc
Q 029327 111 VEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMK-SGEVFSEPTQRWYEPDWWK 189 (195)
Q Consensus 111 ~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~-~~~~~R~~~~Kwyvp~~~~ 189 (195)
.|+|+|||+||++++.|+...|+++|+||+|||+|||+++|+++|+.....+.+|+|++. ..+|+|++.+|||||+..+
T Consensus 453 ~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey 532 (636)
T PLN03133 453 VDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW 532 (636)
T ss_pred echhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC
Confidence 999999999999999998755599999999999999999999999877667789999975 5689999999999988643
No 4
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-38 Score=260.44 Aligned_cols=160 Identities=51% Similarity=1.018 Sum_probs=151.5
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCc
Q 029327 32 KKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHV 111 (195)
Q Consensus 32 ~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~ 111 (195)
+++++++|+|.|+++..+||+.+|+||...+..+++++...+|.++|+||..+ .+.+.+..|++|+++|+|.+.+++..
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhH
Confidence 78999999999999999999999999999988888898899999999999943 34788899999999999999996699
Q ss_pred cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEeecCcceeCCCCCccccCccccC
Q 029327 112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFG 191 (195)
Q Consensus 112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g 191 (195)
|+|.+|+.||+..|.++..+++++|++|+|||+|||+..|...|..+..++++|||||++|+++-+|.+|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999998889999999999999999999999999 6999
Q ss_pred CC
Q 029327 192 DG 193 (195)
Q Consensus 192 ~~ 193 (195)
++
T Consensus 166 ~~ 167 (274)
T KOG2288|consen 166 DN 167 (274)
T ss_pred cc
Confidence 87
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.6e-36 Score=246.50 Aligned_cols=139 Identities=29% Similarity=0.476 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHH
Q 029327 49 KNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHA 128 (195)
Q Consensus 49 ~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~ 128 (195)
+||++||+||++... ..+.+++++||+|.+.+.++.++..|.+|+++|||||+. ||.|+|.|||+||+++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence 589999999999752 135789999999999844467788899999999999977 89999999999999999999
Q ss_pred hhcCC-ceEEEEEcCeeEeeHHHHHHHHhcc--CCC-CceEEEEeecCcceeCCCCCccccCccccCCCC
Q 029327 129 VEKWD-AEFYTKVNDDVYVNIDALGAALSSH--LDK-PRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGK 194 (195)
Q Consensus 129 ~~~c~-~~fvlK~DDDvfVn~~~L~~~L~~~--~~~-~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g~~~ 194 (195)
.++|+ ++|++|+|||+|||+++|.++|... .+. ..+|+|++..++|+|++.+|||+|+. .|..+.
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~-~y~~~~ 143 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE-EYPDDY 143 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee-eccccc
Confidence 99995 9999999999999999999999987 233 34455557677999999999999988 444443
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.94 E-value=7.5e-27 Score=204.64 Aligned_cols=148 Identities=17% Similarity=0.311 Sum_probs=125.9
Q ss_pred CCCCCeeEEEEEECCCCC--HHHHHHHHHHHhccchhhhh-hccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEE
Q 029327 30 HSKKRHLAVIGIITTFGR--KKNRDAIREAWMSTGAALRE-LQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFII 106 (195)
Q Consensus 30 ~~~~~~~lli~V~S~p~~--~~rR~aIR~TW~~~~~~~~~-~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~ 106 (195)
-+.++.+++++|+|..++ +.||++.|+||.+.....++ ..-...+.++|++|.+++.+-+.++.|.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 467788999999999998 88999999999986532211 122466788999999998777899999999999999997
Q ss_pred eCCC------------------ccCCcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEE
Q 029327 107 LDDH------------------VEAPEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIG 167 (195)
Q Consensus 107 ~~df------------------~DsY~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G 167 (195)
+ +| .|+|.|+|+||+++++|+...| +++|++|+|||+|||+++++++|+.. +++.+|+|
T Consensus 155 l-pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 155 L-PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred E-ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 7 69 7778889999999999999999 89999999999999999999999764 56679999
Q ss_pred Eee-cCcceeCCC
Q 029327 168 CMK-SGEVFSEPT 179 (195)
Q Consensus 168 ~~~-~~~~~R~~~ 179 (195)
.+. ...|.|++.
T Consensus 233 ~v~~~~~p~Rd~~ 245 (382)
T PTZ00210 233 RYNYYNRIWRRNQ 245 (382)
T ss_pred eeCCCCccccCCC
Confidence 964 346788764
No 7
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.2e-12 Score=113.53 Aligned_cols=117 Identities=20% Similarity=0.302 Sum_probs=94.6
Q ss_pred CCCCCCCeeEEEEEECCCCCHHHH-HHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEE
Q 029327 28 TQHSKKRHLAVIGIITTFGRKKNR-DAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFII 106 (195)
Q Consensus 28 ~~~~~~~~~lli~V~S~p~~~~rR-~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~ 106 (195)
+.-..++..+++.|+|.+.+...| +.+-+||++.+.. ..|+--. +.++...+.-| .
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~-----------~s~~~~~f~~v-~ 140 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPT-----------LSKDDSRFPTV-Y 140 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCcc-----------CCCCCCcCcee-e
Confidence 335677889999999999888877 5999999998742 2344311 12222344444 3
Q ss_pred eCCCccCCcchHHHHHHHHHHHhhcC--CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327 107 LDDHVEAPEELAKKMKSFFVHAVEKW--DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC 168 (195)
Q Consensus 107 ~~df~DsY~nLt~Ktl~~l~w~~~~c--~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~ 168 (195)
. +..|+|+++..||..+++++.++. +++|++|+|||+|+.++||..+|.++++.+++|+|+
T Consensus 141 ~-~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~ 203 (364)
T KOG2246|consen 141 Y-NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGY 203 (364)
T ss_pred c-cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecc
Confidence 6 689999999999999999998776 899999999999999999999999999999999999
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.33 E-value=2.7e-12 Score=108.79 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=64.8
Q ss_pred eeEEEEEECCCCCHHHH-HHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327 35 HLAVIGIITTFGRKKNR-DAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA 113 (195)
Q Consensus 35 ~~lli~V~S~p~~~~rR-~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds 113 (195)
-.++|+|+|++++.+.| .+|++||++.+.. .+|+.....+ ..|..+ .-.+++ .++...+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~d------~~l~~~--~~~~l~-~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAED------PSLPTV--TGVHLV-NPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEE-E------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCccc------cccccc--cccccc-cCCCcch
Confidence 35788999999877766 8999999998641 2343322222 233333 223444 5566666
Q ss_pred CcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEee
Q 029327 114 PEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMK 170 (195)
Q Consensus 114 Y~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~ 170 (195)
+-..+++.++++.+-...- +.+|++++|||+||++++|+++|..+++.+++|+|+-.
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~ 123 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPS 123 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeec
Confidence 5544555555545422222 78999999999999999999999999999999999953
No 9
>PLN03153 hypothetical protein; Provisional
Probab=97.50 E-value=0.001 Score=61.58 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=34.9
Q ss_pred CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327 133 DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC 168 (195)
Q Consensus 133 ~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~ 168 (195)
+++|++++|||+|+.++||++.|..+++.+..|+|.
T Consensus 210 d~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs 245 (537)
T PLN03153 210 DVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGG 245 (537)
T ss_pred CCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecc
Confidence 899999999999999999999999999999999996
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.15 Score=47.49 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcC--CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327 119 KKMKSFFVHAVEKW--DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC 168 (195)
Q Consensus 119 ~Ktl~~l~w~~~~c--~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~ 168 (195)
.-..+.++++.++. +++|++-+-|++|||...|++.+..+.-+..+|+|-
T Consensus 81 ~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 81 KTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred ccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 33446777877776 899999999999999999999999988888999986
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.61 E-value=1.2 Score=35.53 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=52.2
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCe--EEeCCCccC
Q 029327 36 LAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDF--IILDDHVEA 113 (195)
Q Consensus 36 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDI--i~~~df~Ds 113 (195)
.+.|+|++.-....-++.|+.--... ...+.++++...+.+ ...+.+++-...++.+ ..+. .
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~----~ 65 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIR----R 65 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEee----c
Confidence 35666766654444444444443221 123556666644332 3334555555566653 2221 1
Q ss_pred CcchH--HHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 114 PEELA--KKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 114 Y~nLt--~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
-.|.. .|. .++.++...+..+|++.+|||+.+.++-|...+...
T Consensus 66 ~~~~g~~~k~-~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 66 PRNPGPGGKA-RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp ---HHHHHHH-HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred CCCCCcchHH-HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH
Confidence 12332 233 355677777889999999999999998888877765
No 12
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.75 E-value=12 Score=33.40 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=62.1
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327 33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE 112 (195)
Q Consensus 33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D 112 (195)
+.+.+.|+|++.-+. +.|+++-.+... . .-....++.+-..+.+ ...+.+++..+++..+..+ +
T Consensus 52 ~~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~d---~t~~~l~~~~~~~~~v~~i----~ 115 (420)
T PRK11204 52 EYPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSSD---NTGEILDRLAAQIPRLRVI----H 115 (420)
T ss_pred CCCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCCc---cHHHHHHHHHHhCCcEEEE----E
Confidence 345677777776554 335555443211 0 0113444444333332 3334555555666666544 2
Q ss_pred CCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 113 APEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 113 sY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
...|.. | -.++..+.+.++.+|++..|+|..+..+.|.+.++..
T Consensus 116 ~~~n~G-k-a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 116 LAENQG-K-ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred cCCCCC-H-HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 222332 3 3456666677899999999999999999888877765
No 13
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.32 E-value=10 Score=29.78 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=45.0
Q ss_pred eEEEEEeeecCCCCCchhhhch-hhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327 74 IVVRFVIGRSANHGDSFDTEID-SENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG 152 (195)
Q Consensus 74 v~~vFvvG~~~~~~~~~~~~l~-~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~ 152 (195)
+.++.|-..+.+ ...+.++ .....+.-+..+. ... -.|. .|. .++.+....+..+|++.+|+|..+.++-|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~~-~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKILN-NSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEee-ccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 566666655443 2223343 2222233444442 222 1222 232 345666677889999999999999988888
Q ss_pred HHHhcc
Q 029327 153 AALSSH 158 (195)
Q Consensus 153 ~~L~~~ 158 (195)
..+...
T Consensus 102 ~l~~~~ 107 (229)
T cd04192 102 TFVAFI 107 (229)
T ss_pred HHHHHh
Confidence 877744
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=87.15 E-value=21 Score=31.58 Aligned_cols=110 Identities=8% Similarity=0.062 Sum_probs=62.5
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCC--eEEeCCCc
Q 029327 34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTND--FIILDDHV 111 (195)
Q Consensus 34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygD--Ii~~~df~ 111 (195)
.+.+-|+|++.-....-.+.|+ +...+. -..+.++++...+++ .+ .+.+++=.+.|.+ |..+.+ .
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D--~t-~~iv~~~~~~~p~~~i~~v~~-~ 106 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD--PA-LAVVRRLRADFPDADIDLVID-A 106 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC--cH-HHHHHHHHHhCCCCceEEEEC-C
Confidence 4556777776655444445554 333321 123778887766554 22 2233333345665 322211 1
Q ss_pred cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
+. .....|.-...+ +.+.++.+|++.+|+|+.+.++-|.+.+...
T Consensus 107 ~~-~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~ 151 (373)
T TIGR03472 107 RR-HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPL 151 (373)
T ss_pred CC-CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHh
Confidence 11 122346544333 4567799999999999999999888877765
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=86.33 E-value=18 Score=32.14 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=58.9
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCC---CeEEeCC
Q 029327 33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTN---DFIILDD 109 (195)
Q Consensus 33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~yg---DIi~~~d 109 (195)
..+.+-|+|++.-....-.+.|+.--.+. ....+.+++|-..++|. + .+.+++=.+++. .+..+.
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~--------yp~~~eIIVVDd~StD~--T-~~i~~~~~~~~~~~~~i~vi~- 105 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQD--------YPGKLHVILVDDHSTDG--T-ADIARAAARAYGRGDRLTVVS- 105 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCC--------CCCceEEEEEeCCCCCc--H-HHHHHHHHHhcCCCCcEEEec-
Confidence 34556666766554333333333222111 11236777777666652 2 122222222333 344342
Q ss_pred CccCCcchHHHH---HHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 110 HVEAPEELAKKM---KSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 110 f~DsY~nLt~Kt---l~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
..+.-.+-..|. -.+++.+...+ +.+|++.+|+|+.+.++.|.+.+...
T Consensus 106 ~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~ 158 (384)
T TIGR03469 106 GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARA 158 (384)
T ss_pred CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 112111223443 34566655554 38999999999999998888777654
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.75 E-value=29 Score=31.41 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=61.8
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327 34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA 113 (195)
Q Consensus 34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds 113 (195)
.+.+-|+|++.-+...-++.|+.- .+.. -.++.++.+-..+.+ ...+.+++..+++..+..+. ..
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs~D---~t~~~~~~~~~~~~~v~vv~-~~-- 138 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGSSD---DTAQVLDALLAEDPRLRVIH-LA-- 138 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCCCc---cHHHHHHHHHHhCCCEEEEE-eC--
Confidence 456777777776544333444321 1111 124666555544443 23344555555666554331 11
Q ss_pred CcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 114 PEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 114 Y~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.|. .|. .+++.....++.+|++..|.|+.+..+.|.+.+...
T Consensus 139 -~n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~ 180 (444)
T PRK14583 139 -HNQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPL 180 (444)
T ss_pred -CCC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHH
Confidence 122 232 456666677899999999999999999888877654
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.79 E-value=24 Score=28.02 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=46.1
Q ss_pred CceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHH
Q 029327 72 KGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDAL 151 (195)
Q Consensus 72 ~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L 151 (195)
..+.++.+-+.+.+ .....+++..+++..+..+.+ ... ... .++..+.+....+|++.+|+|..+.++-|
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~-~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l 99 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDN-PKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeC-CCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence 45677777666554 233444544444444443321 111 111 34555555568999999999999998877
Q ss_pred HHHHhcc
Q 029327 152 GAALSSH 158 (195)
Q Consensus 152 ~~~L~~~ 158 (195)
...+...
T Consensus 100 ~~~~~~~ 106 (249)
T cd02525 100 LELVEAL 106 (249)
T ss_pred HHHHHHH
Confidence 7777654
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=77.11 E-value=25 Score=25.49 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=44.1
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG 152 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~ 152 (195)
.+.++++-..+++ ...+.+++-.+....+..+ ...+ |. -.-.++..+.+++..+|++.+|||.++..+.|.
T Consensus 27 ~~eiivvdd~s~d---~~~~~~~~~~~~~~~i~~i-~~~~---n~--g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 27 DFEIIVVDDGSTD---ETEEILEEYAESDPNIRYI-RNPE---NL--GFSAARNRGIKHAKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp EEEEEEEECS-SS---SHHHHHHHHHCCSTTEEEE-EHCC---CS--HHHHHHHHHHHH--SSEEEEEETTEEE-TTHHH
T ss_pred CEEEEEecccccc---ccccccccccccccccccc-cccc---cc--cccccccccccccceeEEEEeCCCceEcHHHHH
Confidence 3556666655533 3334444444323444433 2222 22 122334444555667799999999999987666
Q ss_pred HHHhccCC-CCceEEEE
Q 029327 153 AALSSHLD-KPRVYIGC 168 (195)
Q Consensus 153 ~~L~~~~~-~~~ly~G~ 168 (195)
..+..... .....+|.
T Consensus 98 ~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 66555432 33445555
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.47 E-value=29 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 131 KWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 131 ~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.+..+|++..|||..+..+.+...+...
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~ 99 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAA 99 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHH
Confidence 3488999999999999998888877753
No 20
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=75.44 E-value=11 Score=32.86 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCc--cCCcchHHHHHHH
Q 029327 47 RKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHV--EAPEELAKKMKSF 124 (195)
Q Consensus 47 ~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~--DsY~nLt~Ktl~~ 124 (195)
..+.|+.-|-.=.. .+.......++|+=|.+ .....|..=.....-++.+ ++. +.+...+.-...+
T Consensus 18 ~~~~R~f~~~~~~k------~fts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl-~~~s~~~F~s~~~c~n~g 85 (346)
T COG4092 18 LTDSRQFSRTSAVK------VFTSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYL-DFGSPEPFASETICANNG 85 (346)
T ss_pred hhHHHHHhhHhhhh------hccccccEEEEEEecch-----hHHHHHHHHhccccceEEE-ecCCCccccchhhhhhcc
Confidence 34456655544333 23334556666766643 2224444444444554545 343 3455556667788
Q ss_pred HHHHhhcCCceEEEEEcCeeEeeHHHHHHHHh
Q 029327 125 FVHAVEKWDAEFYTKVNDDVYVNIDALGAALS 156 (195)
Q Consensus 125 l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~ 156 (195)
..|.++.|+..+++..|-|+|...++..+.|.
T Consensus 86 a~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 86 ADYSHEKCESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred chhhhccccccEEEEEeccccccHHHHHHHHH
Confidence 89999999999999999999999999999884
No 21
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=75.21 E-value=42 Score=27.03 Aligned_cols=110 Identities=11% Similarity=-0.007 Sum_probs=58.8
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCc
Q 029327 32 KKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHV 111 (195)
Q Consensus 32 ~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~ 111 (195)
.....+-|+|++.-....-...|+.-..+.. ....+.++++...+.+ ...+.+.+..+. .+..+. ..
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~d---~t~~~~~~~~~~--~v~~i~-~~ 92 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGSTD---GTAEIAREYADK--GVKLLR-FP 92 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCCc---cHHHHHHHHhhC--cEEEEE-cC
Confidence 3444567777776654444555655544321 1122556666544443 222333322222 233331 11
Q ss_pred cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
+ |. .|. .++....+....+|++.+|+|+.+..+-|.+.+....
T Consensus 93 ~---~~-g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 93 E---RR-GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred C---CC-ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 1 21 222 3455555566779999999999999877777777653
No 22
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=74.42 E-value=36 Score=25.93 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=51.0
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG 152 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~ 152 (195)
.+.++.+-+.+++ . ....+++...++..+..+ ... .|. .| -.++..+...+..+|++.+|+|.....+.|.
T Consensus 29 ~~eiivvdd~s~d--~-t~~~~~~~~~~~~~i~~i-~~~---~n~-G~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTD--R-TLEILRELAARDPRVKVI-RLS---RNF-GQ-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCc--c-HHHHHHHHHhhCCCEEEE-Eec---CCC-Cc-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 4666666665554 2 223344444455555434 222 222 12 2444555556678999999999999888777
Q ss_pred HHHhccCCCCceEEEE
Q 029327 153 AALSSHLDKPRVYIGC 168 (195)
Q Consensus 153 ~~L~~~~~~~~ly~G~ 168 (195)
..++...+...+..|.
T Consensus 100 ~l~~~~~~~~~~v~g~ 115 (181)
T cd04187 100 EMLAKWEEGYDVVYGV 115 (181)
T ss_pred HHHHHHhCCCcEEEEE
Confidence 7777644445555665
No 23
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.28 E-value=43 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 121 tl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.-.+++++. ....+|++..|||+.+..+.|...+...
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 345667765 4578999999999999988777666654
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=70.63 E-value=32 Score=27.46 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHhhcC--CceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 123 SFFVHAVEKW--DAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 123 ~~l~w~~~~c--~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
.++.++.+.+ +.+|++..|+|+.+.++.|.+.+....
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 3566666666 379999999999999999888887653
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=69.83 E-value=39 Score=24.39 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.++.++.+.++.+|++.+|+|..+..+.|...+...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHh
Confidence 455666667799999999999999888777774544
No 26
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=69.24 E-value=55 Score=25.88 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=46.0
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG 152 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~ 152 (195)
...+++|...+++ + ....| ++...+..+.++. .+. . .|. .++.........+|++.+|+|+.+..+.|.
T Consensus 28 ~~eiivvdd~s~d--~-~~~~l-~~~~~~~~~~v~~--~~~-~---g~~-~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~ 96 (235)
T cd06434 28 PLEIIVVTDGDDE--P-YLSIL-SQTVKYGGIFVIT--VPH-P---GKR-RALAEGIRHVTTDIVVLLDSDTVWPPNALP 96 (235)
T ss_pred CCEEEEEeCCCCh--H-HHHHH-HhhccCCcEEEEe--cCC-C---ChH-HHHHHHHHHhCCCEEEEECCCceeChhHHH
Confidence 4566666655543 2 22233 3455666666441 222 1 233 233333344589999999999999999988
Q ss_pred HHHhccC
Q 029327 153 AALSSHL 159 (195)
Q Consensus 153 ~~L~~~~ 159 (195)
+.+....
T Consensus 97 ~l~~~~~ 103 (235)
T cd06434 97 EMLKPFE 103 (235)
T ss_pred HHHHhcc
Confidence 8888764
No 27
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=69.18 E-value=7.8 Score=34.06 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCce---EEEEe-ecCcceeCCCC----CccccCccc
Q 029327 118 AKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRV---YIGCM-KSGEVFSEPTQ----RWYEPDWWK 189 (195)
Q Consensus 118 t~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~l---y~G~~-~~~~~~R~~~~----Kwyvp~~~~ 189 (195)
-.=|++|++-+. .+|+||+=-|.++.=+++++++........- +-+.+ ...--.|++.. .++++.|+.
T Consensus 84 i~St~aGL~~~~----~~Ya~KlRtD~~l~~~~~l~~~~~~~~~~~~~~~~~~RIv~~~~f~~~~~~~~~~pfh~SD~f~ 159 (311)
T PF07507_consen 84 IVSTLAGLKAAK----TKYAMKLRTDNRLTGNNFLDLYEKYPDRESNYSFFNERIVTSSFFTRDPRRGEPVPFHISDFFY 159 (311)
T ss_pred HHHHHHHHHHhC----CceEEEEcccccccchHHHHHHHHhcccCcccccccCcEEeccccccCcccCccccccHhhHHH
Confidence 345677777764 5999999999999999999999986543221 11221 11112244443 688999999
Q ss_pred cCC
Q 029327 190 FGD 192 (195)
Q Consensus 190 ~g~ 192 (195)
||.
T Consensus 160 FG~ 162 (311)
T PF07507_consen 160 FGR 162 (311)
T ss_pred hcc
Confidence 995
No 28
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=67.26 E-value=1e+02 Score=30.22 Aligned_cols=129 Identities=11% Similarity=0.081 Sum_probs=73.7
Q ss_pred CCCCeeEEEEEECCCCCHH-HHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchh-----hhchhhhcCCCCe
Q 029327 31 SKKRHLAVIGIITTFGRKK-NRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFD-----TEIDSENSQTNDF 104 (195)
Q Consensus 31 ~~~~~~lli~V~S~p~~~~-rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~-----~~l~~E~~~ygDI 104 (195)
......+.|+|++.-...+ -+..|+.+..+... ......+.+ |++..+.+...... ..+.+|....+.+
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i 194 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRI 194 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcE
Confidence 4556678888888876654 34678887765321 001223444 88877665211110 1222222222344
Q ss_pred EEeCCCccCCcchHHHHHHHHHHHhhc-CCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEee
Q 029327 105 IILDDHVEAPEELAKKMKSFFVHAVEK-WDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMK 170 (195)
Q Consensus 105 i~~~df~DsY~nLt~Ktl~~l~w~~~~-c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~ 170 (195)
... ..-.|.-.|.-..-.|.... .+.+|++-.|-|+.+..+.|.+.+.....+++ .|.++
T Consensus 195 ~yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQ 255 (691)
T PRK05454 195 FYR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQ 255 (691)
T ss_pred EEE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEe
Confidence 422 22234456776555554332 37899999999999999999988876533333 45554
No 29
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=66.90 E-value=43 Score=26.29 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=53.0
Q ss_pred CceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHH
Q 029327 72 KGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDAL 151 (195)
Q Consensus 72 ~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L 151 (195)
..+.++.|-+.+++ .....+++..+.++..+.+ ...-.|.. +. .++....+.+..+|++.+|+|....++.+
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~---i~~~~n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRV---LTLPKNRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEE---EEcccCCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 34677777666655 2234455555566664211 11111221 21 34444555667799999999999999988
Q ss_pred HHHHhc-cCCCCceEEEE
Q 029327 152 GAALSS-HLDKPRVYIGC 168 (195)
Q Consensus 152 ~~~L~~-~~~~~~ly~G~ 168 (195)
...+.. ......+..|.
T Consensus 101 ~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 101 EKLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHHHHhccCCcEEEEE
Confidence 888886 33344566665
No 30
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=65.79 E-value=38 Score=25.61 Aligned_cols=87 Identities=8% Similarity=0.007 Sum_probs=49.6
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG 152 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~ 152 (195)
...++.+-..+.+ .....+++-..++..+..+ ....... .-.++....+....+|++..|+|..+.++.|.
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~-~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVI-RLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIP 98 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEE-EccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 3555555544443 2333444444555554333 2222221 11344444455566999999999999998888
Q ss_pred HHHhc-cCCCCceEEEE
Q 029327 153 AALSS-HLDKPRVYIGC 168 (195)
Q Consensus 153 ~~L~~-~~~~~~ly~G~ 168 (195)
+.+.. ..+...+..|.
T Consensus 99 ~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 99 KLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHHhccCCcEEEEE
Confidence 88886 33445555555
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=65.72 E-value=70 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
.++....++...+|++.+|+|+.+.++.|.+.+....
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 4566666677889999999999999999988887653
No 32
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=65.42 E-value=1.1e+02 Score=27.79 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=59.0
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327 34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA 113 (195)
Q Consensus 34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds 113 (195)
.+.+-|+|++.-....-++.|+.--...- ....+.++.+-..++| + ..+.+++-.+.+..+... ..+.
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~y-------p~~~~eIiVVDd~StD--~-T~~il~~~~~~~~~v~v~--~~~~ 115 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTY-------PIELIDIILANNQSTD--D-SFQVFCRAQNEFPGLSLR--YMNS 115 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCC-------CCCCeEEEEEECCCCh--h-HHHHHHHHHHhCCCeEEE--EeCC
Confidence 34566666665544334444444322210 1223455555444443 2 222333333445554322 1121
Q ss_pred CcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 114 PEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 114 Y~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
| ..| -.++.++.++++.+|++..|+|..+..+.|.+.+....
T Consensus 116 --~-~Gk-a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 116 --D-QGK-AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred --C-CCH-HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 1 123 24566667778899999999999999999888877653
No 33
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=64.28 E-value=66 Score=25.02 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=46.4
Q ss_pred eEEEEEeeecCCCCCchhhhchhhhcCCC--CeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHH
Q 029327 74 IVVRFVIGRSANHGDSFDTEIDSENSQTN--DFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDAL 151 (195)
Q Consensus 74 v~~vFvvG~~~~~~~~~~~~l~~E~~~yg--DIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L 151 (195)
+.+++|...+.+ .+ .+.+++-.+.|. ++..+..-.. . ....|. ..+..+...+..+|++.+|+|+.+.++-|
T Consensus 31 ~eiivVdd~s~d--~t-~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~-~~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 31 YEILFCVQDEDD--PA-IPVVRKLIAKYPNVDARLLIGGEK-V-GINPKV-NNLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred eEEEEEeCCCcc--hH-HHHHHHHHHHCCCCcEEEEecCCc-C-CCCHhH-HHHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 678888776664 22 234444444554 3322211111 1 122343 23445556678999999999999988888
Q ss_pred HHHHhcc
Q 029327 152 GAALSSH 158 (195)
Q Consensus 152 ~~~L~~~ 158 (195)
...+...
T Consensus 105 ~~l~~~~ 111 (196)
T cd02520 105 RRMVAPL 111 (196)
T ss_pred HHHHHHh
Confidence 7777763
No 34
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=62.98 E-value=89 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=26.2
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
+...+......+|++..|+|+.+..+-|...+...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l 108 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARI 108 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHH
Confidence 34444445678999999999999887777776654
No 35
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=61.41 E-value=31 Score=30.15 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCC-CCchhhhch----hhhcCCCCeE
Q 029327 31 SKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANH-GDSFDTEID----SENSQTNDFI 105 (195)
Q Consensus 31 ~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~-~~~~~~~l~----~E~~~ygDIi 105 (195)
++.+..|.|+|+|-.... -.-+.+|=++.-..+... ....+.++-+++.+... ...+...+. .|.+ -|=|.
T Consensus 48 ~~~~~~L~IGIpTV~R~~--~sYL~~TL~SLl~~ls~~-Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~-sG~l~ 123 (297)
T PF04666_consen 48 PRTGKKLCIGIPTVKREK--ESYLLDTLASLLDGLSPE-ERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIE-SGLLE 123 (297)
T ss_pred CCCCCeEEEEecccccCC--CchHHHHHHHHHHhCCHH-HhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHH-hCceE
Confidence 556666999999977432 234555555532222211 23345555556654421 111112222 2211 12222
Q ss_pred EeCCCccC-CcchH----------------HHHHHHHHHHhhcC--CceEEEEEcCeeEeeHH---HHHHHHhccCCCCc
Q 029327 106 ILDDHVEA-PEELA----------------KKMKSFFVHAVEKW--DAEFYTKVNDDVYVNID---ALGAALSSHLDKPR 163 (195)
Q Consensus 106 ~~~df~Ds-Y~nLt----------------~Ktl~~l~w~~~~c--~~~fvlK~DDDvfVn~~---~L~~~L~~~~~~~~ 163 (195)
++ .-..+ |..+. .|...-+-++.++| .++|++-..||+..... .+.+++......+-
T Consensus 124 VI-~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W 202 (297)
T PF04666_consen 124 VI-SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDW 202 (297)
T ss_pred EE-ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhcCCCc
Confidence 22 11222 22211 13333444556667 68899999999998775 44555555444444
Q ss_pred eEEEEee---cCcceeCC
Q 029327 164 VYIGCMK---SGEVFSEP 178 (195)
Q Consensus 164 ly~G~~~---~~~~~R~~ 178 (195)
+++.... .|...|..
T Consensus 203 ~~LeFs~lG~iGKlf~s~ 220 (297)
T PF04666_consen 203 LYLEFSQLGFIGKLFRSS 220 (297)
T ss_pred eEEEeecCcchhheeccc
Confidence 4443321 24555543
No 36
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=61.37 E-value=87 Score=25.38 Aligned_cols=87 Identities=10% Similarity=0.181 Sum_probs=48.7
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCC--eEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTND--FIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDA 150 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygD--Ii~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~ 150 (195)
.+.+++|-..+++. ..+.+++-.++|++ +..+. .-.|... -.++.........+|++.+|+|..+.++.
T Consensus 40 ~~eiivvDdgS~D~---t~~i~~~~~~~~~~~~v~~~~----~~~n~G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~ 110 (243)
T PLN02726 40 DFEIIVVDDGSPDG---TQDVVKQLQKVYGEDRILLRP----RPGKLGL--GTAYIHGLKHASGDFVVIMDADLSHHPKY 110 (243)
T ss_pred CeEEEEEeCCCCCC---HHHHHHHHHHhcCCCcEEEEe----cCCCCCH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHH
Confidence 56777777666552 22333433344543 32221 1112211 12444444456789999999999999988
Q ss_pred HHHHHhccC-CCCceEEEE
Q 029327 151 LGAALSSHL-DKPRVYIGC 168 (195)
Q Consensus 151 L~~~L~~~~-~~~~ly~G~ 168 (195)
|.+.+.... ....+..|.
T Consensus 111 l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 111 LPSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHHHHHHHhcCCcEEEEc
Confidence 887776542 233455554
No 37
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=59.51 E-value=68 Score=25.05 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHhhcCCceEEEEEcCeeEeeHHHHHHHHhc-cCCCCceEEEE
Q 029327 127 HAVEKWDAEFYTKVNDDVYVNIDALGAALSS-HLDKPRVYIGC 168 (195)
Q Consensus 127 w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~-~~~~~~ly~G~ 168 (195)
.....+..+|++.+|+|..+.++.|...+.. ..++..+..|.
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 114 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGS 114 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 3333455699999999999999888888876 34444555554
No 38
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=58.66 E-value=36 Score=26.87 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 118 AKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 118 t~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
..|+-.....+....+.++++..|+|+.|+++-|...+....
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~ 57 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLA 57 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHh
Confidence 467666655544347899999999999999999888887764
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=56.84 E-value=87 Score=23.97 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
++..+...+..+|++..|+|..+..+.|...++..
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 34444455678999999999999998888877764
No 40
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=56.71 E-value=64 Score=27.09 Aligned_cols=110 Identities=8% Similarity=0.016 Sum_probs=60.6
Q ss_pred EEEECCCCCHH-HHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhh-------hchhhhcCCCCeEEeCCC
Q 029327 39 IGIITTFGRKK-NRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDT-------EIDSENSQTNDFIILDDH 110 (195)
Q Consensus 39 i~V~S~p~~~~-rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~-------~l~~E~~~ygDIi~~~df 110 (195)
|+|++.-.... -.+.++........ ......+.+ |++-.+.+ ++... +|.+|....-.+...
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI-~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~--- 72 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDF-FILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYR--- 72 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEE-EEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEE---
Confidence 66777777665 66677766642110 000123555 88865544 22211 122333222333322
Q ss_pred ccCCcchHHHHHHHHHHHhhc-CCceEEEEEcCeeEeeHHHHHHHHhccC
Q 029327 111 VEAPEELAKKMKSFFVHAVEK-WDAEFYTKVNDDVYVNIDALGAALSSHL 159 (195)
Q Consensus 111 ~DsY~nLt~Ktl~~l~w~~~~-c~~~fvlK~DDDvfVn~~~L~~~L~~~~ 159 (195)
..-.|.-+|+-..-...... ++.+|++-.|-|+.+.++-|.+.+....
T Consensus 73 -~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~ 121 (254)
T cd04191 73 -RRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRME 121 (254)
T ss_pred -EcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22234445554443333322 5789999999999999999988887653
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=55.33 E-value=93 Score=23.84 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=27.9
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
++..+...+..+|++..|+|.++.++.|...+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~ 105 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFI 105 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHH
Confidence 34555556789999999999999998888877764
No 42
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=52.41 E-value=74 Score=21.85 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=25.6
Q ss_pred CCccCCcchHHHHHHHHHHHhh-cCCceEEEEEcCeeEeeHHH
Q 029327 109 DHVEAPEELAKKMKSFFVHAVE-KWDAEFYTKVNDDVYVNIDA 150 (195)
Q Consensus 109 df~DsY~nLt~Ktl~~l~w~~~-~c~~~fvlK~DDDvfVn~~~ 150 (195)
.+...|..-.... ..++.+.+ .+.++|++.+|-|=|+.++.
T Consensus 47 ~~~~~~~~~~~~~-~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 47 RWVDPYRDERRQR-AWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred EeCCCccchHHHH-HHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 3455665433332 23333333 35899999999998887765
No 43
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=52.02 E-value=1.2e+02 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327 126 VHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC 168 (195)
Q Consensus 126 ~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~ 168 (195)
....+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444556889999999999999888776555433233334555
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.86 E-value=38 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc--CCCCceEEEE
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH--LDKPRVYIGC 168 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~--~~~~~ly~G~ 168 (195)
.++..+.+.|..+|++..|+|..+..+.+...+... .+...+..|.
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~ 112 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGD 112 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEee
Confidence 445666667889999999999999998888877332 2333445555
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.01 E-value=1.2e+02 Score=23.35 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=51.0
Q ss_pred HHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCC-CeEEeCCCccCCcchHHHHHHHHHHHhh
Q 029327 52 DAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTN-DFIILDDHVEAPEELAKKMKSFFVHAVE 130 (195)
Q Consensus 52 ~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~yg-DIi~~~df~DsY~nLt~Ktl~~l~w~~~ 130 (195)
..|.++..+... . ....+.+++|-..+++ . ....+++-...++ .+..+ ....+. .. ...+.....
T Consensus 11 ~~l~~~l~sl~~----q-~~~~~eiiVvddgS~d--~-t~~~~~~~~~~~~~~~~~~-~~~~~~-G~----~~~~n~g~~ 76 (214)
T cd04196 11 KYLREQLDSILA----Q-TYKNDELIISDDGSTD--G-TVEIIKEYIDKDPFIIILI-RNGKNL-GV----ARNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHh----C-cCCCeEEEEEeCCCCC--C-cHHHHHHHHhcCCceEEEE-eCCCCc-cH----HHHHHHHHH
Confidence 456666655321 1 1125677777765554 2 2233444444554 23323 122221 22 223333455
Q ss_pred cCCceEEEEEcCeeEeeHHHHHHHHhc
Q 029327 131 KWDAEFYTKVNDDVYVNIDALGAALSS 157 (195)
Q Consensus 131 ~c~~~fvlK~DDDvfVn~~~L~~~L~~ 157 (195)
.+..+|++..|+|..+.++.|...+..
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHH
Confidence 678999999999999998888887775
No 46
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=48.18 E-value=1.3e+02 Score=23.50 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCC
Q 029327 125 FVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLD 160 (195)
Q Consensus 125 l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~ 160 (195)
+..+.+....+|++.+|+|+++.++.|...+.....
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 344445568899999999999999888888876543
No 47
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=47.28 E-value=1.3e+02 Score=23.03 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHHhh-cCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEe
Q 029327 123 SFFVHAVE-KWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCM 169 (195)
Q Consensus 123 ~~l~w~~~-~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~ 169 (195)
.+++++.. ..+.+|++.+|.|+.+.++.|...+........+..|+.
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 45555432 246899999999999998888887777644445555653
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=46.53 E-value=42 Score=25.36 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
++..+.+.+..+|++..|+|..+..+-|...++..
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 34445556688999999999999988888777765
No 49
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=45.88 E-value=1.5e+02 Score=23.50 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSS 157 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~ 157 (195)
++....+.++.+|++.+|.|+.+.++.|.+.+..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh
Confidence 4556666778999999999999999988884443
No 50
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=40.82 E-value=2.4e+02 Score=24.42 Aligned_cols=88 Identities=7% Similarity=0.026 Sum_probs=50.5
Q ss_pred CceEEEEEeeecCCCCCchhhhchhhhcCCCC-eEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHH
Q 029327 72 KGIVVRFVIGRSANHGDSFDTEIDSENSQTND-FIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDA 150 (195)
Q Consensus 72 ~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygD-Ii~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~ 150 (195)
..+.+++|-..++| .+. +.+++-++.+++ ++.+ ....++. |. .++.-..+++..+|++.+|.|.-.+++.
T Consensus 37 ~~~EIIvVDDgS~D--~T~-~il~~~~~~~~~~v~~i-~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~ 107 (325)
T PRK10714 37 KEYEILLIDDGSSD--NSA-EMLVEAAQAPDSHIVAI-LLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEE 107 (325)
T ss_pred CCEEEEEEeCCCCC--cHH-HHHHHHHhhcCCcEEEE-EeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHH
Confidence 34778888877665 222 233333334444 3322 1222222 11 1333444556889999999999999999
Q ss_pred HHHHHhccCCCCceEEEE
Q 029327 151 LGAALSSHLDKPRVYIGC 168 (195)
Q Consensus 151 L~~~L~~~~~~~~ly~G~ 168 (195)
+.++++.......+..|.
T Consensus 108 i~~l~~~~~~~~DvV~~~ 125 (325)
T PRK10714 108 IPRLVAKADEGYDVVGTV 125 (325)
T ss_pred HHHHHHHHHhhCCEEEEE
Confidence 888888753323344444
No 51
>PRK10018 putative glycosyl transferase; Provisional
Probab=40.34 E-value=2.3e+02 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 125 FVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 125 l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
+..+...+..+|++..|+|....++.|...+...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 4445556789999999999999998887766643
No 52
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=38.90 E-value=41 Score=27.98 Aligned_cols=35 Identities=9% Similarity=-0.115 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.+++++.+ ..++|++..|||+.+..+.|...+...
T Consensus 64 ~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 64 QGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 46677654 378999999999999987777766653
No 53
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=36.34 E-value=54 Score=22.94 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhc
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSS 157 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~ 157 (195)
.++..+...+..+|++-+|+|..+.++.+...+..
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 33444445558999999999999998888776343
No 54
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=35.90 E-value=77 Score=28.16 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHH---HHHHHHhccCCCCceEE
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNID---ALGAALSSHLDKPRVYI 166 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~---~L~~~L~~~~~~~~ly~ 166 (195)
++.|+.+.++.++++-++||+.+.++ -+.+.|.-+..+++++.
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ 133 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC 133 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE
Confidence 66776666689999999999999998 33444444444555443
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.68 E-value=83 Score=24.51 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=27.2
Q ss_pred HHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCC
Q 029327 125 FVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDK 161 (195)
Q Consensus 125 l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~ 161 (195)
+.-+...+..+|++.+|+|..+..+.|.+.+......
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 3344455678999999999999988887766654433
No 56
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=35.09 E-value=78 Score=27.07 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=40.0
Q ss_pred CCCeEEeCCCccCCcchHHHHHHHHHHHhhcC--CceE------EEEEcCeeEeeHHHHHHHHhcc
Q 029327 101 TNDFIILDDHVEAPEELAKKMKSFFVHAVEKW--DAEF------YTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 101 ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c--~~~f------vlK~DDDvfVn~~~L~~~L~~~ 158 (195)
+||++.+. -.. -+.||++..+-+ .+| +.+| |+.+|-|.-+++-+|.+.|+..
T Consensus 37 aG~~vEi~-Gp~----~sgKt~vL~ql~-a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hr 96 (293)
T KOG2859|consen 37 AGTLVEIS-GPG----NSGKTLVLQQLV-AHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHR 96 (293)
T ss_pred cCcEEEEe-CCC----CccHHHHHHHHH-HHeecccccCCceeEEEEEeccccccHHHHHHHHHHH
Confidence 89998662 122 379999877764 577 4443 8999999999999999998864
No 57
>COG5454 Predicted secreted protein [Function unknown]
Probab=33.99 E-value=25 Score=24.96 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.4
Q ss_pred CCeeEEEEEECCCCCHH-HHHHHHHHHhcc
Q 029327 33 KRHLAVIGIITTFGRKK-NRDAIREAWMST 61 (195)
Q Consensus 33 ~~~~lli~V~S~p~~~~-rR~aIR~TW~~~ 61 (195)
.++-+= .|.|+|.+.. .|..||-||+..
T Consensus 33 ~dv~lG-tv~sAP~~p~~~R~vl~TT~~sa 61 (89)
T COG5454 33 GDVTLG-TVPSAPANPHLLRAVLRTTVASA 61 (89)
T ss_pred CCCCCC-cCCCCCCCcchhhHHHHHHHHHH
Confidence 344444 3899998876 899999999984
No 58
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=33.69 E-value=59 Score=29.63 Aligned_cols=81 Identities=6% Similarity=0.153 Sum_probs=46.2
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCe---EEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHH
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDF---IILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNID 149 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDI---i~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~ 149 (195)
...+.|++-.+.| +.+ +.++.=.++|.-+ ++++. .+. .+.-|.-..+- .++.-+.+|++..|||+++.++
T Consensus 114 ~~ElLfcv~s~eD--pAi-~vv~~Ll~kyp~VdAklf~gG-~~v--g~npKInN~mp-gy~~a~ydlvlisDsgI~m~pd 186 (431)
T KOG2547|consen 114 KYELLFCVESSED--PAI-EVVERLLKKYPNVDAKLFFGG-EKV--GLNPKINNMMP-GYRAAKYDLVLISDSGIFMKPD 186 (431)
T ss_pred ceEEEEEEccCCC--cHH-HHHHHHHhhCCCcceEEEEcc-ccc--ccChhhhccCH-HHHHhcCCEEEEecCCeeecCc
Confidence 4668888877665 333 3445555556522 12321 111 12233322111 1122256799999999999999
Q ss_pred HHHHHHhccCC
Q 029327 150 ALGAALSSHLD 160 (195)
Q Consensus 150 ~L~~~L~~~~~ 160 (195)
.+.+...+..+
T Consensus 187 tildm~t~M~s 197 (431)
T KOG2547|consen 187 TILDMATTMMS 197 (431)
T ss_pred hHHHHHHhhhc
Confidence 99998887643
No 59
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=33.63 E-value=42 Score=28.26 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEe
Q 029327 132 WDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCM 169 (195)
Q Consensus 132 c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~ 169 (195)
...+-|+-+|||+.++.+.|.--+......+.-..|+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 36788999999999999999877776555555567763
No 60
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=30.81 E-value=40 Score=21.60 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHhccchhhhhhccCCceEEEEEeeecCC
Q 029327 56 EAWMSTGAALRELQDNKGIVVRFVIGRSAN 85 (195)
Q Consensus 56 ~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~ 85 (195)
++|++. +++...+..+.-+|++|.+..
T Consensus 9 qSWM~D---LrS~I~~~~I~ql~ipGsHns 35 (51)
T PF03490_consen 9 QSWMSD---LRSSIGEMAITQLFIPGSHNS 35 (51)
T ss_pred HHHHHH---HHHHHhcceeeeEEecccccc
Confidence 688875 334445778999999998765
No 61
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=30.40 E-value=2.7e+02 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCc
Q 029327 119 KKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPR 163 (195)
Q Consensus 119 ~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ 163 (195)
.|. ..+..+.++.+.+|++..|.|+.+..+-|.+.+.....+++
T Consensus 215 ~KA-gnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 215 AKA-GNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred CCh-HHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCC
Confidence 453 34566667788899999999999999888777765433333
No 62
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=30.23 E-value=3.3e+02 Score=22.82 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=48.2
Q ss_pred CCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCC-ccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHH
Q 029327 71 NKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH-VEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNID 149 (195)
Q Consensus 71 ~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df-~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~ 149 (195)
...+.++++=+.+.. ...+.|.+-.+.++-+..+... ....-+.+ .+..-+...+..+|++..|.|+++.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 345666666655443 2335566666777766223111 11112222 233444455689999999999999999
Q ss_pred HHHHHHh
Q 029327 150 ALGAALS 156 (195)
Q Consensus 150 ~L~~~L~ 156 (195)
.+.+.+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9988888
No 63
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=29.23 E-value=79 Score=25.46 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhc
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSS 157 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~ 157 (195)
.+..++...|..+|++..|.|..+.++.+...+..
T Consensus 61 ~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 61 AQRNFALELATNDWVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHH
Confidence 44577777888899999999999988776655554
No 64
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=26.25 E-value=3.2e+02 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHH
Q 029327 121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAAL 155 (195)
Q Consensus 121 tl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L 155 (195)
.-.+++.+... +++|++..|+|+.+.++.|...+
T Consensus 64 ~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 33455555433 67999999999999988888875
No 65
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=26.18 E-value=84 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHH
Q 029327 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAAL 155 (195)
Q Consensus 123 ~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L 155 (195)
.++.-+.+..+++|++.++||+++.-++.+..|
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~i 76 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWLEDI 76 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHH
Confidence 466777778899999999999999755544333
No 66
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=25.08 E-value=1e+02 Score=20.61 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEeeHHHHHHHHhccCCCCceEEEEee
Q 029327 144 VYVNIDALGAALSSHLDKPRVYIGCMK 170 (195)
Q Consensus 144 vfVn~~~L~~~L~~~~~~~~ly~G~~~ 170 (195)
+|-+++.++..+......+.+|.+|+.
T Consensus 22 ~Y~~Pe~Vi~iIN~lR~keGvYG~c~~ 48 (63)
T PF03295_consen 22 FYEDPEEVINIINELRNKEGVYGSCYY 48 (63)
T ss_pred eccCHHHHHHHHHHhhhccCceeEEEE
Confidence 456777777777777778899999953
No 67
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=23.01 E-value=3.1e+02 Score=20.11 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=46.4
Q ss_pred EEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhc-----CCCCeEEeCCCccC
Q 029327 39 IGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENS-----QTNDFIILDDHVEA 113 (195)
Q Consensus 39 i~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~-----~ygDIi~~~df~Ds 113 (195)
|.|.|-+...+||..+++.-...+ +..-|+-|-.... .....+..... .++-- ..-+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~-----------~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~-----l~~g 63 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALG-----------LDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRP-----LTPG 63 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC-----------CCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCC-----CChh
Confidence 456788999999999998655432 3455666554321 11111111110 11110 1111
Q ss_pred CcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHH
Q 029327 114 PEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNID 149 (195)
Q Consensus 114 Y~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~ 149 (195)
-.--.+-.+..++-+.+. +.++.+-..||+.+..+
T Consensus 64 EiGC~lSH~~~w~~~~~~-~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 64 EIGCFLSHYKLWQKIVES-NLEYALILEDDAILDPD 98 (128)
T ss_pred hHHHHHHHHHHHHHHHHc-CCCeEEEEccCcEECCC
Confidence 111112223333333221 56899999999999887
No 68
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=21.56 E-value=1.5e+02 Score=29.84 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhc-C-----CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEeecCcceeCCCCCccc
Q 029327 119 KKMKSFFVHAVEK-W-----DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYE 184 (195)
Q Consensus 119 ~Ktl~~l~w~~~~-c-----~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~~~~R~~~~Kwyv 184 (195)
.|.+...+|+..- | ...|++-+|-|+-+.++.|...++....++.+ |.+ .| -|.++.++|.+
T Consensus 420 ~krw~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~V--gga-CG-~I~~~~~~w~v 487 (862)
T KOG2571|consen 420 KKRWNQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQV--GGA-CG-RILNKGGSWVV 487 (862)
T ss_pred HhhHHHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCccc--cee-cc-ccccCCCceEE
Confidence 4666677775543 2 57799999999999999999999998766663 332 13 56667888854
No 69
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=20.84 E-value=50 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.2
Q ss_pred ceEEEEEcCeeEeeHHH
Q 029327 134 AEFYTKVNDDVYVNIDA 150 (195)
Q Consensus 134 ~~fvlK~DDDvfVn~~~ 150 (195)
-.|-+..|||++|-+++
T Consensus 20 e~F~F~GDDDvWVFIn~ 36 (90)
T TIGR02148 20 QYFEFRGDDDVWVFINN 36 (90)
T ss_pred cEEEEEcCCeEEEEECC
Confidence 45678999999999876
No 70
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.78 E-value=5.7e+02 Score=22.30 Aligned_cols=112 Identities=10% Similarity=-0.001 Sum_probs=69.3
Q ss_pred CeeEEEEEECCCCCHH-HHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327 34 RHLAVIGIITTFGRKK-NRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE 112 (195)
Q Consensus 34 ~~~lli~V~S~p~~~~-rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D 112 (195)
.+.+-|+|++.-.+.+ ..+.++..-... -....++.+...+.+ ...+.+++-..+++..+.+ .
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~d---~~~~~~~~~~~~~~~~~~~-~--- 116 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGSTD---ETYEILEELGAEYGPNFRV-I--- 116 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCCh---hHHHHHHHHHhhcCcceEE-E---
Confidence 3677777888776663 334443332222 122567777764443 3445566666666533323 1
Q ss_pred CCc-chHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCC
Q 029327 113 APE-ELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKP 162 (195)
Q Consensus 113 sY~-nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~ 162 (195)
+. .-...-..++.++......++++..|-|..+..+.|.+.+......+
T Consensus 117 -~~~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 117 -YPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred -eccccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 11 11233356677777777899999999999999999999988865443
Done!