Query 029327
Match_columns 195
No_of_seqs 171 out of 1080
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.7 2.3E-16 7.9E-21 134.1 10.3 124 32-176 10-136 (280)
2 3bcv_A Putative glycosyltransf 85.1 7.7 0.00026 29.7 9.7 104 36-158 6-109 (240)
3 1xhb_A Polypeptide N-acetylgal 83.7 12 0.00041 32.3 11.4 110 34-158 28-139 (472)
4 1qg8_A Protein (spore coat pol 81.3 17 0.00057 28.1 10.8 88 73-168 30-125 (255)
5 2d7i_A Polypeptide N-acetylgal 76.9 17 0.00059 32.6 10.3 110 34-158 111-221 (570)
6 2ffu_A Ppgalnact-2, polypeptid 70.2 35 0.0012 29.7 10.5 106 34-158 65-171 (501)
7 2z86_A Chondroitin synthase; G 64.7 69 0.0024 28.5 11.4 106 34-158 374-479 (625)
8 4fix_A UDP-galactofuranosyl tr 63.0 32 0.0011 31.7 9.0 37 122-158 257-293 (657)
9 3ckj_A Putative uncharacterize 45.6 1.1E+02 0.0038 24.9 8.8 46 124-169 122-170 (329)
10 4hg6_A Cellulose synthase subu 40.6 1E+02 0.0035 28.9 8.6 35 124-158 229-263 (802)
11 2z86_A Chondroitin synthase; G 30.6 2.8E+02 0.0096 24.4 11.3 107 35-158 93-199 (625)
12 2pjx_C Syntaxin-4; membrane tr 27.3 51 0.0017 17.4 2.3 27 13-43 3-29 (29)
13 1omz_A Alpha-1,4-N-acetylhexos 20.4 89 0.003 26.0 3.8 37 133-169 106-142 (293)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.66 E-value=2.3e-16 Score=134.11 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=84.6
Q ss_pred CCCeeEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCC
Q 029327 32 KKRHLAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH 110 (195)
Q Consensus 32 ~~~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df 110 (195)
...-.|+|+|+|++++ ..|+.+||+||++.+.. .+||.+...+ + .+... ..++++ ..++
T Consensus 10 ~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-----------~~fifsd~~d--~----~l~~~--~~~~~~-~~~~ 69 (280)
T 2j0a_A 10 LQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-----------QTFIFTDSPD--E----RLQER--LGPHLV-VTQC 69 (280)
T ss_dssp CCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-----------GEEEEESSCC--H----HHHHH--HGGGEE-ECCC
T ss_pred CCcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-----------ceEEEcCCCc--c----ccccc--ccccce-eccc
Confidence 3455688899999984 56889999999987521 1344443332 2 22222 235666 4355
Q ss_pred c--cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEeecCccee
Q 029327 111 V--EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176 (195)
Q Consensus 111 ~--DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~~~~R 176 (195)
. +++.+++.|+...+++... -+++|++|+|||+||++++|+++|...++.+.+|+|+...+.|+|
T Consensus 70 ~~~~~~~~l~~K~~~~~~~~l~-~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~ 136 (280)
T 2j0a_A 70 SAEHSHPALSCKMAAEFDAFLV-SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH 136 (280)
T ss_dssp -------CCCHHHHHHHHHHHH-HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-----
T ss_pred cccccccchHHHHHHHHHHHhC-CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc
Confidence 4 3678899999998886531 289999999999999999999999999999999999965555665
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=85.06 E-value=7.7 Score=29.70 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=58.3
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCc
Q 029327 36 LAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPE 115 (195)
Q Consensus 36 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~ 115 (195)
.+-|+|++.-....-+++|+.--.+. ...+.++.|-..+++ ...+.+++-.+++..|..+ . .+
T Consensus 6 ~vsViIp~yn~~~~l~~~l~Sl~~q~---------~~~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i-~-~~--- 68 (240)
T 3bcv_A 6 KVSVIVPIYNVEKYLDQCVQALLAQT---------LSDIEIILIDDESPD---NCPKICDDYAAQYPNIKVI-H-KK--- 68 (240)
T ss_dssp SEEEEEEESSCTTTHHHHHHHHHTCS---------SSSEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEE-E-CC---
T ss_pred cEEEEEecCCCHHHHHHHHHHHHhCc---------CCCeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEE-E-CC---
Confidence 45556666543333334443332221 124667776655544 2233444444556666545 2 22
Q ss_pred chHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 116 ELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 116 nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
|.. .-.+...+.+++..+|++.+|+|.++.++.|...+...
T Consensus 69 n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~ 109 (240)
T 3bcv_A 69 NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVA 109 (240)
T ss_dssp CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHH
T ss_pred CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHH
Confidence 221 22344555666788999999999999988777766654
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=83.70 E-value=12 Score=32.33 Aligned_cols=110 Identities=8% Similarity=-0.027 Sum_probs=58.6
Q ss_pred CeeEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCC-CeEEeCCCc
Q 029327 34 RHLAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTN-DFIILDDHV 111 (195)
Q Consensus 34 ~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~yg-DIi~~~df~ 111 (195)
.+.+-|+|++.-.. ..-+..|+.--.+.. ......++.|-..+.+ +...+.|++-.+.+. .+..+. ..
T Consensus 28 ~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~-------~~~~~EIIvVDd~S~d--~~t~~~l~~~~~~~~~~v~vi~-~~ 97 (472)
T 1xhb_A 28 LPTTSVVIVFHNEAWSTLLRTVHSVINRSP-------RHMIEEIVLVDDASER--DFLKRPLESYVKKLKVPVHVIR-ME 97 (472)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSSC-------GGGEEEEEEEECSCCC--GGGTHHHHHHHHSSSSCEEEEE-CS
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHHhcCc-------HhHceEEEEEECCCCc--HHHHHHHHHHHHHCCCcEEEEE-CC
Confidence 34566667776544 333333333222211 0112355555544443 224345555555666 454442 22
Q ss_pred cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
++. .+ -.++......+..+|++..|+|+.+.++-|...+...
T Consensus 98 ~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~ 139 (472)
T 1xhb_A 98 QRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARI 139 (472)
T ss_dssp SCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHH
T ss_pred CCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHH
Confidence 222 22 2344445556679999999999999988777766654
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=81.31 E-value=17 Score=28.07 Aligned_cols=88 Identities=14% Similarity=0.067 Sum_probs=50.0
Q ss_pred ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCC------cchHHHHHHHHHHHhhcCCceEEEEEcCeeEe
Q 029327 73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAP------EELAKKMKSFFVHAVEKWDAEFYTKVNDDVYV 146 (195)
Q Consensus 73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY------~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfV 146 (195)
.+.++.|-..+++ ... .+.++......|..+. . +.. .|.. .-.++..+.+++..+|++..|+|.++
T Consensus 30 ~~eiivvDd~S~d---~t~-~~~~~~~~~~~i~~i~-~-~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~ 101 (255)
T 1qg8_A 30 DFELFIMDDNSNE---ETL-NVIRPFLNDNRVRFYQ-S-DISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIY 101 (255)
T ss_dssp CEEEEEEECSCCH---HHH-HHHGGGGGSTTEEEEE-C-CCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEE
T ss_pred ceEEEEEECCCCc---hHH-HHHHHHhhcCCEEEEe-c-ccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 4667776655443 222 3333433355565442 1 100 2322 33456666677899999999999999
Q ss_pred eHHHHHHHHhccC--CCCceEEEE
Q 029327 147 NIDALGAALSSHL--DKPRVYIGC 168 (195)
Q Consensus 147 n~~~L~~~L~~~~--~~~~ly~G~ 168 (195)
.++.|...+.... +.-.+..|.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 102 MPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp CTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred ChHHHHHHHHHHHhCCCceEEEec
Confidence 9887777665532 333444444
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=76.93 E-value=17 Score=32.65 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=58.2
Q ss_pred CeeEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327 34 RHLAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE 112 (195)
Q Consensus 34 ~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D 112 (195)
.+.+-|+|++.-.. ..-+..|..--.+.. ......++.|-..+++ .++.+.|++-.+.+..|..+. ...
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~-------~~~~~EIIVVDDgS~D--~tl~~~l~~~~~~~~~v~vi~-~~~ 180 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSP-------PELVAEIVLVDDFSDR--EHLKKPLEDYMALFPSVRILR-TKK 180 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSC-------GGGEEEEEEEECSCCC--GGGTHHHHHHHTTSTTEEEEE-CSS
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCC-------ccCcEEEEEEECCCCc--HHHHHHHHHHHHhCCeEEEEE-CCC
Confidence 34567777776654 233333332222211 0112356666544444 332445555556666665442 222
Q ss_pred CCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 113 APEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 113 sY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
. ..+.. +.......+..+|++..|+|+.+.++-|...+...
T Consensus 181 n-~G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l 221 (570)
T 2d7i_A 181 R-EGLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLLDRI 221 (570)
T ss_dssp C-CCHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHH
T ss_pred C-CCHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHH
Confidence 2 23333 33344445678999999999999887666555543
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=70.24 E-value=35 Score=29.70 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=56.7
Q ss_pred CeeEEEEEECCCCCH-HHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327 34 RHLAVIGIITTFGRK-KNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE 112 (195)
Q Consensus 34 ~~~lli~V~S~p~~~-~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D 112 (195)
.+.+-|+|++.-... .-+..|..--.+.. ......+++|-..+.+ .+. .+..+.+..+..+. ...
T Consensus 65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~-------~~~~~EIIvVDDgS~D--~t~----~~~~~~~~~v~vi~-~~~ 130 (501)
T 2ffu_A 65 LPATSVVITFHNEARSALLRTVVSVLKKSP-------PHLIKEIILVDDYSND--PED----GALLGKIEKVRVLR-NDR 130 (501)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSC-------GGGEEEEEEEECSCSC--THH----HHGGGGBTTEEEEE-CSS
T ss_pred CCCEEEEEEeCcCcHHHHHHHHHHHHhhCc-------hhhceeEEEEECCCCc--hHH----HHHHhcCCCEEEEE-CCC
Confidence 345667777765543 33333332222211 0112466666655444 222 22223455565442 222
Q ss_pred CCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 113 APEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 113 sY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
|.. .-.++......+..+|++..|+|+.+.++-|...+...
T Consensus 131 ---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~ 171 (501)
T 2ffu_A 131 ---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERV 171 (501)
T ss_dssp ---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHH
T ss_pred ---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHH
Confidence 222 23445555566789999999999999988777766654
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=64.68 E-value=69 Score=28.51 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=58.8
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327 34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA 113 (195)
Q Consensus 34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds 113 (195)
...+-|+|++.-....-+++|..--.+. ...+.++.|-..+++ . ..+.+++-.+.+..|..+ . .+
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~~q~---------~~~~eiivvdd~S~d--~-t~~~~~~~~~~~~~i~~~-~-~~- 438 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESALNQT---------ITDLEVCICDDGSTD--D-TLRILQEHYANHPRVRFI-S-QK- 438 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHHSSS---------CCSEEEEEEEESCSS--S-HHHHHHHHHTTCTTEEEE-E-EC-
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhCc---------CCCeEEEEEECcCCh--h-HHHHHHHHHhhCCcEEEE-e-CC-
Confidence 3456666666543322333443322211 124667766665554 2 233444444556666544 2 12
Q ss_pred CcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 114 PEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 114 Y~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
|.. .-.++..+...+..+|++..|+|.++.++.|...+...
T Consensus 439 --n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~ 479 (625)
T 2z86_A 439 --NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEF 479 (625)
T ss_dssp --CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHH
T ss_pred --CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHH
Confidence 221 22345555566788999999999999988887766543
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=62.96 E-value=32 Score=31.72 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 122 l~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
-.+++.+....+++|++..|||+.+.++.|...+...
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l 293 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMH 293 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHH
Confidence 3567777665578999999999999988877766643
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=45.58 E-value=1.1e+02 Score=24.85 Aligned_cols=46 Identities=7% Similarity=-0.056 Sum_probs=31.3
Q ss_pred HHHHHhhcCCceEEEEEcCeeE-eeHHHHHHHHhcc--CCCCceEEEEe
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVY-VNIDALGAALSSH--LDKPRVYIGCM 169 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvf-Vn~~~L~~~L~~~--~~~~~ly~G~~ 169 (195)
++......+..+|++.+|+|.. +.++.|...+... .+.-.+..|..
T Consensus 122 a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~ 170 (329)
T 3ckj_A 122 ALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFY 170 (329)
T ss_dssp HHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEe
Confidence 3444455678899999999999 8887777666552 23345556663
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=40.56 E-value=1e+02 Score=28.87 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
++..+.+.++.+|++.+|+|+.+.++.|.+.+...
T Consensus 229 alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~ 263 (802)
T 4hg6_A 229 NMSAALERLKGELVVVFDADHVPSRDFLARTVGYF 263 (802)
T ss_dssp HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHH
Confidence 56677777899999999999999998887777664
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=30.60 E-value=2.8e+02 Score=24.43 Aligned_cols=107 Identities=9% Similarity=-0.079 Sum_probs=55.2
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCC
Q 029327 35 HLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAP 114 (195)
Q Consensus 35 ~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY 114 (195)
+.+-|+|++.-. ...|+++-.+... ......+.++.|-..+.+ ... .+.++......+..+. ..+
T Consensus 93 p~vsviIp~~n~----~~~l~~~l~sl~~----q~~~~~~eiivvDd~s~d---~t~-~~~~~~~~~~~i~~i~-~~~-- 157 (625)
T 2z86_A 93 DGLSIVIPTYNR----AKILAITLACLCN----QKTIYDYEVIVADDGSKE---NIE-EIVREFESLLNIKYVR-QKD-- 157 (625)
T ss_dssp CCEEEEEEESSC----HHHHHHHHHHHHT----CCCSSCEEEEEEEESCSS---CHH-HHHHTTTTTSCEEEEE-ECC--
T ss_pred CcEEEEEecCCc----HHHHHHHHHHHHh----hccCCCeEEEEEeCCCch---hHH-HHHHHhhhcCCeEEEE-eCC--
Confidence 356677777543 2344444333210 001125667766655443 222 2333332223444331 111
Q ss_pred cchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327 115 EELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH 158 (195)
Q Consensus 115 ~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~ 158 (195)
.+ .-.-.++..+...+..+|++..|+|+.+.++.|...+...
T Consensus 158 ~~--~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~ 199 (625)
T 2z86_A 158 YG--YQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELL 199 (625)
T ss_dssp CS--CCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHH
T ss_pred CC--cchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHH
Confidence 11 0012344455556788999999999999988777766654
No 12
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=27.27 E-value=51 Score=17.37 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=18.4
Q ss_pred HHhhccccCCCCCCCCCCCCCCeeEEEEEEC
Q 029327 13 ARQEGFVSGYLSQNDTQHSKKRHLAVIGIIT 43 (195)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~lli~V~S 43 (195)
+++.+.+.|..++. ....+.+.++|+|
T Consensus 3 drthelrqgdnisd----dedevrvalvvhs 29 (29)
T 2pjx_C 3 DRTHELRQGDNISD----DEDEVRVALVVHS 29 (29)
T ss_pred cchhhhhcCCCCCC----ccceeEEEEEeeC
Confidence 34556666666666 6677888887876
No 13
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=20.44 E-value=89 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=28.3
Q ss_pred CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEe
Q 029327 133 DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCM 169 (195)
Q Consensus 133 ~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~ 169 (195)
..+-|+-+|||+.++.+.|.--+......+.-..|+.
T Consensus 106 ~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 106 ETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 6789999999999999999766666544444466663
Done!