Query 029327
Match_columns 195
No_of_seqs 171 out of 1080
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 18:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029327.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029327hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 75.0 4.8 0.00035 28.1 7.2 35 126-160 74-108 (265)
2 d1xhba2 c.68.1.17 (A:95-422) P 70.2 19 0.0014 27.1 10.9 34 124-157 98-131 (328)
3 d1qg8a_ c.68.1.1 (A:) Spore co 52.1 36 0.0026 24.2 10.1 33 124-156 79-111 (255)
4 d2hy5a1 c.114.1.1 (A:1-130) Su 23.4 43 0.0031 22.2 4.0 41 36-83 2-43 (130)
5 d1sctb_ a.1.1.2 (B:) Hemoglobi 19.5 24 0.0018 23.8 2.0 16 47-62 12-27 (150)
6 d2d1pb1 c.114.1.1 (B:1-119) tR 16.2 87 0.0063 19.9 4.3 39 36-82 3-42 (119)
7 d1a6ma_ a.1.1.2 (A:) Myoglobin 15.2 37 0.0027 22.8 2.1 15 48-62 4-18 (151)
8 d1scta_ a.1.1.2 (A:) Hemoglobi 15.1 31 0.0023 23.1 1.7 15 48-62 12-26 (149)
9 d1spgb_ a.1.1.2 (B:) Hemoglobi 14.9 35 0.0025 23.1 1.9 14 48-61 5-18 (147)
10 d1x4da1 d.58.7.1 (A:8-96) Matr 14.6 53 0.0038 20.0 2.6 34 72-107 6-39 (89)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.98 E-value=4.8 Score=28.12 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCC
Q 029327 126 VHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLD 160 (195)
Q Consensus 126 ~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~ 160 (195)
..+.+.++.+|++.+|||..+..+.|...++....
T Consensus 74 n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 74 LQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQ 108 (265)
T ss_dssp GSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTT
T ss_pred hhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHh
Confidence 34445558899999999999999988888776543
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.25 E-value=19 Score=27.10 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=26.6
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhc
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSS 157 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~ 157 (195)
+.......+..+|++.+|+|+.+.++-|...+..
T Consensus 98 a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~ 131 (328)
T d1xhba2 98 ARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 131 (328)
T ss_dssp HHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHH
T ss_pred HHHHHHHhhhcceeeecCcccccChhHHHHHHHH
Confidence 4556666778999999999999998777665543
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=52.15 E-value=36 Score=24.20 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHh
Q 029327 124 FFVHAVEKWDAEFYTKVNDDVYVNIDALGAALS 156 (195)
Q Consensus 124 ~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~ 156 (195)
++..+...++.+|++.+|+|.++.++.|...++
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~ 111 (255)
T d1qg8a_ 79 LINQAIEMAEGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHH
Confidence 455666778899999999999999776665444
No 4
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]}
Probab=23.43 E-value=43 Score=22.20 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=26.0
Q ss_pred eEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeec
Q 029327 36 LAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRS 83 (195)
Q Consensus 36 ~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~ 83 (195)
+++|+|.++|.. ..-+.++| .+... +..+..|..+|+.|..
T Consensus 2 k~~i~v~~~P~~~~~a~~al~--fA~aa-----l~~gh~V~~vFf~~dG 43 (130)
T d2hy5a1 2 KFALQINEGPYQHQASDSAYQ--FAKAA-----LEKGHEIFRVFFYHDG 43 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHH--HHHHH-----HHTTCEEEEEEECGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHH--HHHHH-----HHCCCeEEEEEEecch
Confidence 467889999954 45667776 34321 2246667668888753
No 5
>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=19.49 E-value=24 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHhccc
Q 029327 47 RKKNRDAIREAWMSTG 62 (195)
Q Consensus 47 ~~~rR~aIR~TW~~~~ 62 (195)
+.+.+++||+||....
T Consensus 12 ~a~qk~li~~SW~~v~ 27 (150)
T d1sctb_ 12 NADQKDLLRMSWGVLS 27 (150)
T ss_dssp CHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6788999999999854
No 6
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]}
Probab=16.25 E-value=87 Score=19.89 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=26.9
Q ss_pred eEEEEEECCCC-CHHHHHHHHHHHhccchhhhhhccCCceEEEEEeee
Q 029327 36 LAVIGIITTFG-RKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGR 82 (195)
Q Consensus 36 ~lli~V~S~p~-~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~ 82 (195)
.++|++.++|. +..-|.++|-..+-.. .+..|. +|+.|.
T Consensus 3 kv~ii~~~~P~~~~~~~~al~~Ala~a~-------~~~~V~-iff~~d 42 (119)
T d2d1pb1 3 RIAFVFSTAPHGTAAGREGLDALLATSA-------LTDDLA-VFFIAD 42 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHT-------TCSCEE-EEECGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHh-------CCCCEE-EEEech
Confidence 37788999996 4557789988876542 356675 566654
No 7
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}
Probab=15.19 E-value=37 Score=22.83 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhccc
Q 029327 48 KKNRDAIREAWMSTG 62 (195)
Q Consensus 48 ~~rR~aIR~TW~~~~ 62 (195)
...|++||+||+...
T Consensus 4 ~~e~~lI~~sW~~v~ 18 (151)
T d1a6ma_ 4 EGEWQLVLHVWAKVE 18 (151)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999864
No 8
>d1scta_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=15.13 E-value=31 Score=23.13 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhccc
Q 029327 48 KKNRDAIREAWMSTG 62 (195)
Q Consensus 48 ~~rR~aIR~TW~~~~ 62 (195)
...|.+||+||....
T Consensus 12 ~~qk~~i~~sW~~v~ 26 (149)
T d1scta_ 12 EAIKANLRRSWGVLS 26 (149)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999999754
No 9
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=14.86 E-value=35 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcc
Q 029327 48 KKNRDAIREAWMST 61 (195)
Q Consensus 48 ~~rR~aIR~TW~~~ 61 (195)
.+.|.+||+||+..
T Consensus 5 ~~ek~lI~~sW~~v 18 (147)
T d1spgb_ 5 DAERAAIKALWGKI 18 (147)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 46889999999975
No 10
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.59 E-value=53 Score=20.02 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=26.4
Q ss_pred CceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEe
Q 029327 72 KGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIIL 107 (195)
Q Consensus 72 ~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~ 107 (195)
..-+++||-|.+.. ......|.+--+.||.|..+
T Consensus 6 ~~sr~v~v~nl~~~--~~t~~eL~~lF~~fG~I~~i 39 (89)
T d1x4da1 6 ETRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNH 39 (89)
T ss_dssp CCCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEE
T ss_pred CCCcEEEEECCCCC--cCCHHHHHHHHHhhCCeEEE
Confidence 34578999998764 35567899999999999855
Done!