Query 029329
Match_columns 195
No_of_seqs 165 out of 1147
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02600 enoyl-CoA hydratase 100.0 6.4E-45 1.4E-49 296.1 19.2 180 1-195 23-202 (251)
2 PRK09076 enoyl-CoA hydratase; 100.0 1.1E-44 2.4E-49 295.8 19.4 180 1-195 30-209 (258)
3 PRK06143 enoyl-CoA hydratase; 100.0 9.3E-45 2E-49 295.9 18.6 179 1-195 35-213 (256)
4 PRK05869 enoyl-CoA hydratase; 100.0 1.1E-44 2.4E-49 289.7 18.5 179 1-195 35-213 (222)
5 PRK05980 enoyl-CoA hydratase; 100.0 1.6E-44 3.4E-49 295.2 18.7 180 1-195 31-214 (260)
6 PRK07657 enoyl-CoA hydratase; 100.0 2.4E-44 5.2E-49 294.1 18.8 180 1-195 32-211 (260)
7 PRK08150 enoyl-CoA hydratase; 100.0 4.9E-44 1.1E-48 291.5 18.8 177 1-195 30-206 (255)
8 PRK05809 3-hydroxybutyryl-CoA 100.0 7.5E-44 1.6E-48 291.2 19.2 180 1-195 32-211 (260)
9 TIGR03210 badI 2-ketocyclohexa 100.0 5.8E-44 1.2E-48 291.3 18.1 179 1-195 30-208 (256)
10 PRK06144 enoyl-CoA hydratase; 100.0 7.1E-44 1.5E-48 291.6 18.5 180 1-195 36-217 (262)
11 PRK09120 p-hydroxycinnamoyl Co 100.0 7.4E-44 1.6E-48 293.3 18.5 179 1-195 36-218 (275)
12 PRK07327 enoyl-CoA hydratase; 100.0 8.1E-44 1.8E-48 292.2 18.4 179 1-195 40-220 (268)
13 PRK06127 enoyl-CoA hydratase; 100.0 1.4E-43 2.9E-48 291.0 19.0 180 1-195 39-220 (269)
14 PRK07658 enoyl-CoA hydratase; 100.0 1.3E-43 2.7E-48 289.4 18.5 179 1-195 29-208 (257)
15 PRK09245 enoyl-CoA hydratase; 100.0 1.2E-43 2.6E-48 290.8 18.3 179 1-195 32-217 (266)
16 TIGR01929 menB naphthoate synt 100.0 1.1E-43 2.4E-48 290.0 17.8 180 1-195 31-211 (259)
17 PRK06190 enoyl-CoA hydratase; 100.0 1.3E-43 2.8E-48 289.4 18.0 177 1-195 32-208 (258)
18 PRK06563 enoyl-CoA hydratase; 100.0 9.4E-44 2E-48 289.9 16.9 179 1-195 27-206 (255)
19 PRK05862 enoyl-CoA hydratase; 100.0 1.7E-43 3.7E-48 288.7 18.4 177 1-195 32-208 (257)
20 PRK06023 enoyl-CoA hydratase; 100.0 1.3E-43 2.9E-48 288.4 17.7 178 1-195 34-211 (251)
21 PRK06142 enoyl-CoA hydratase; 100.0 1.6E-43 3.4E-48 291.0 18.2 179 1-195 34-224 (272)
22 KOG1680 Enoyl-CoA hydratase [L 100.0 2.9E-44 6.3E-49 286.8 13.0 177 1-195 65-241 (290)
23 PRK03580 carnitinyl-CoA dehydr 100.0 2.2E-43 4.9E-48 288.6 18.3 179 1-195 30-208 (261)
24 PRK09674 enoyl-CoA hydratase-i 100.0 2.4E-43 5.3E-48 287.4 18.2 177 1-195 30-206 (255)
25 PLN02664 enoyl-CoA hydratase/d 100.0 2.6E-43 5.6E-48 290.1 18.4 179 1-195 36-226 (275)
26 PRK08138 enoyl-CoA hydratase; 100.0 3.3E-43 7.2E-48 287.6 18.7 177 1-195 36-212 (261)
27 PRK07511 enoyl-CoA hydratase; 100.0 3.2E-43 7E-48 287.5 18.5 179 1-195 31-212 (260)
28 PRK08139 enoyl-CoA hydratase; 100.0 4.3E-43 9.4E-48 287.5 19.1 178 1-195 39-217 (266)
29 TIGR02280 PaaB1 phenylacetate 100.0 3.5E-43 7.6E-48 286.7 18.2 178 1-195 27-207 (256)
30 PRK05864 enoyl-CoA hydratase; 100.0 4.9E-43 1.1E-47 288.7 18.7 179 1-195 38-224 (276)
31 PRK05870 enoyl-CoA hydratase; 100.0 3.7E-43 7.9E-48 285.5 17.5 177 1-195 31-207 (249)
32 PRK08140 enoyl-CoA hydratase; 100.0 5.9E-43 1.3E-47 286.2 18.4 178 1-195 32-213 (262)
33 PRK07396 dihydroxynaphthoic ac 100.0 5.9E-43 1.3E-47 287.8 18.1 179 1-195 41-221 (273)
34 PRK05995 enoyl-CoA hydratase; 100.0 5.9E-43 1.3E-47 286.2 18.0 178 1-195 32-212 (262)
35 PRK06688 enoyl-CoA hydratase; 100.0 5.4E-43 1.2E-47 285.9 17.7 178 1-195 33-210 (259)
36 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.9E-43 6.3E-48 285.3 16.0 179 1-195 26-204 (245)
37 PRK06494 enoyl-CoA hydratase; 100.0 6.4E-43 1.4E-47 285.6 18.1 177 1-195 32-208 (259)
38 PRK08258 enoyl-CoA hydratase; 100.0 7E-43 1.5E-47 287.8 18.4 179 1-195 45-228 (277)
39 PRK07260 enoyl-CoA hydratase; 100.0 7E-43 1.5E-47 284.8 18.1 179 1-195 30-212 (255)
40 PRK05674 gamma-carboxygeranoyl 100.0 5E-43 1.1E-47 287.0 16.9 178 1-195 34-214 (265)
41 PRK11423 methylmalonyl-CoA dec 100.0 7.6E-43 1.6E-47 285.4 17.7 178 1-195 32-210 (261)
42 PRK08260 enoyl-CoA hydratase; 100.0 1.1E-42 2.5E-47 289.0 18.3 179 1-195 32-228 (296)
43 PLN02888 enoyl-CoA hydratase 100.0 1.2E-42 2.6E-47 284.8 17.6 176 1-195 38-213 (265)
44 PLN03214 probable enoyl-CoA hy 100.0 1.4E-42 3E-47 286.1 17.6 180 1-195 39-222 (278)
45 PRK07799 enoyl-CoA hydratase; 100.0 1.4E-42 3E-47 284.2 17.4 178 1-195 33-214 (263)
46 PRK07468 enoyl-CoA hydratase; 100.0 2.3E-42 5.1E-47 282.7 18.2 178 1-195 33-213 (262)
47 PRK08252 enoyl-CoA hydratase; 100.0 2.3E-42 5E-47 281.5 18.0 175 1-195 31-205 (254)
48 PRK05981 enoyl-CoA hydratase; 100.0 2.1E-42 4.5E-47 283.5 17.7 179 1-195 32-217 (266)
49 PRK07938 enoyl-CoA hydratase; 100.0 2.4E-42 5.1E-47 280.7 17.9 176 1-195 29-205 (249)
50 PRK08259 enoyl-CoA hydratase; 100.0 1.5E-42 3.2E-47 282.7 16.6 177 1-195 31-207 (254)
51 PRK07110 polyketide biosynthes 100.0 2.6E-42 5.7E-47 280.5 17.8 176 1-195 33-208 (249)
52 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.3E-42 7.1E-47 281.1 17.7 178 1-195 33-212 (257)
53 PLN02921 naphthoate synthase 100.0 4.2E-42 9.2E-47 288.3 18.5 180 1-195 95-275 (327)
54 PRK07659 enoyl-CoA hydratase; 100.0 3.4E-42 7.5E-47 281.4 17.5 177 1-195 34-211 (260)
55 PRK06495 enoyl-CoA hydratase; 100.0 4.2E-42 9E-47 280.5 17.7 176 1-195 31-208 (257)
56 PRK06210 enoyl-CoA hydratase; 100.0 4.7E-42 1E-46 282.3 17.0 179 1-195 34-223 (272)
57 PRK08788 enoyl-CoA hydratase; 100.0 2.5E-41 5.4E-46 279.1 18.0 176 1-192 44-231 (287)
58 PRK06213 enoyl-CoA hydratase; 100.0 2.8E-41 6.2E-46 271.3 17.1 176 1-195 30-206 (229)
59 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.9E-41 1.1E-45 273.2 18.3 173 1-195 28-201 (251)
60 PRK07509 enoyl-CoA hydratase; 100.0 3.4E-41 7.3E-46 275.8 17.2 177 1-195 31-214 (262)
61 PRK08321 naphthoate synthase; 100.0 1E-40 2.2E-45 277.9 18.6 180 1-195 53-250 (302)
62 PRK05617 3-hydroxyisobutyryl-C 100.0 8.4E-41 1.8E-45 282.5 17.7 179 1-195 31-275 (342)
63 KOG1679 Enoyl-CoA hydratase [L 100.0 1.9E-41 4.1E-46 261.5 12.2 180 1-195 59-242 (291)
64 PRK07827 enoyl-CoA hydratase; 100.0 1.2E-40 2.6E-45 272.3 17.3 176 1-195 34-212 (260)
65 PRK08290 enoyl-CoA hydratase; 100.0 1.9E-40 4E-45 274.7 17.9 177 1-195 32-230 (288)
66 PRK06072 enoyl-CoA hydratase; 100.0 2E-40 4.3E-45 269.3 17.6 172 1-195 28-199 (248)
67 PRK07854 enoyl-CoA hydratase; 100.0 2.7E-40 5.7E-45 267.8 18.0 169 1-195 28-196 (243)
68 PRK08272 enoyl-CoA hydratase; 100.0 1.9E-40 4E-45 276.5 17.5 176 1-195 38-238 (302)
69 TIGR03200 dearomat_oah 6-oxocy 100.0 1.3E-39 2.9E-44 272.6 17.3 179 1-194 56-251 (360)
70 PRK12478 enoyl-CoA hydratase; 100.0 1.2E-39 2.6E-44 270.9 16.8 175 1-195 33-223 (298)
71 PLN02157 3-hydroxyisobutyryl-C 100.0 1.3E-39 2.9E-44 278.8 17.4 177 1-195 65-245 (401)
72 PRK07112 polyketide biosynthes 100.0 1.8E-39 3.8E-44 264.7 16.9 174 1-195 32-207 (255)
73 PLN02874 3-hydroxyisobutyryl-C 100.0 1.9E-39 4.2E-44 277.4 17.1 157 1-174 39-197 (379)
74 PLN02267 enoyl-CoA hydratase/i 100.0 3.8E-39 8.3E-44 260.4 17.4 178 1-194 27-212 (239)
75 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.2E-38 2.6E-43 282.3 17.7 180 1-195 303-495 (550)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 2E-38 4.3E-43 280.2 18.2 179 1-195 299-491 (546)
77 KOG1681 Enoyl-CoA isomerase [L 100.0 1.1E-39 2.5E-44 253.6 6.7 179 1-195 50-242 (292)
78 PRK11730 fadB multifunctional 100.0 3.5E-38 7.7E-43 288.2 17.7 170 1-186 35-207 (715)
79 PLN02988 3-hydroxyisobutyryl-C 100.0 6E-38 1.3E-42 267.6 17.0 176 1-194 37-216 (381)
80 cd06558 crotonase-like Crotona 100.0 2.7E-37 5.9E-42 241.7 17.0 167 1-183 27-195 (195)
81 PRK11154 fadJ multifunctional 100.0 3E-37 6.4E-42 282.0 18.2 167 1-182 35-204 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 7.4E-37 1.6E-41 278.9 18.8 177 1-192 30-222 (699)
83 TIGR02437 FadB fatty oxidation 100.0 8.9E-37 1.9E-41 278.6 17.6 169 1-185 35-206 (714)
84 PLN02851 3-hydroxyisobutyryl-C 100.0 1.5E-36 3.4E-41 260.0 17.8 173 1-191 70-246 (407)
85 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-36 3.7E-41 267.9 17.0 174 1-189 49-232 (546)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 3E-36 6.5E-41 267.1 17.0 174 1-189 53-236 (550)
87 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.2E-35 2.5E-40 271.9 18.5 169 1-185 42-227 (737)
88 KOG0016 Enoyl-CoA hydratase/is 100.0 8.9E-34 1.9E-38 224.6 16.4 179 1-195 36-221 (266)
89 COG0447 MenB Dihydroxynaphthoi 100.0 3.4E-34 7.4E-39 221.6 10.5 177 2-195 48-230 (282)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 3.4E-30 7.4E-35 197.9 12.3 178 1-195 60-238 (287)
91 KOG1684 Enoyl-CoA hydratase [L 99.9 3E-27 6.6E-32 194.8 13.2 175 1-191 66-244 (401)
92 cd07014 S49_SppA Signal peptid 99.9 2.7E-23 5.9E-28 160.8 10.7 150 2-175 24-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.9 1.5E-21 3.2E-26 152.3 11.6 150 3-175 16-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.8 1.3E-18 2.9E-23 138.1 12.2 82 2-100 23-104 (211)
95 cd00394 Clp_protease_like Case 99.7 1.4E-17 2.9E-22 126.8 9.8 145 1-166 12-161 (161)
96 TIGR00705 SppA_67K signal pept 99.7 2.1E-17 4.6E-22 148.5 12.2 167 2-189 331-528 (584)
97 cd07022 S49_Sppa_36K_type Sign 99.7 3.4E-17 7.3E-22 130.4 10.6 153 1-173 26-210 (214)
98 cd07023 S49_Sppa_N_C Signal pe 99.7 5.8E-17 1.3E-21 128.4 10.9 155 1-173 18-204 (208)
99 TIGR00706 SppA_dom signal pept 99.7 3.6E-16 7.9E-21 123.8 10.7 156 2-178 15-204 (207)
100 cd07016 S14_ClpP_1 Caseinolyti 99.7 1.3E-15 2.8E-20 115.9 12.4 140 2-166 17-160 (160)
101 cd07018 S49_SppA_67K_type Sign 99.6 1.4E-15 3E-20 121.8 8.6 156 1-175 30-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.5 5.1E-13 1.1E-17 103.3 12.3 140 3-169 16-171 (178)
103 PRK10949 protease 4; Provision 99.4 2.4E-12 5.1E-17 116.3 11.4 158 3-178 350-538 (618)
104 cd07015 Clp_protease_NfeD Nodu 99.3 3.7E-11 8E-16 92.3 11.3 144 3-169 16-165 (172)
105 cd07013 S14_ClpP Caseinolytic 99.2 9.5E-11 2E-15 89.4 9.3 143 2-166 14-162 (162)
106 COG0616 SppA Periplasmic serin 99.2 1.5E-10 3.2E-15 97.3 9.9 159 3-179 83-272 (317)
107 cd07017 S14_ClpP_2 Caseinolyti 99.0 1.6E-09 3.4E-14 83.4 8.7 145 2-166 23-171 (171)
108 PRK11778 putative inner membra 99.0 4.3E-09 9.3E-14 88.4 10.3 120 59-178 147-295 (330)
109 PRK12553 ATP-dependent Clp pro 98.9 5.6E-09 1.2E-13 82.7 8.5 146 2-169 49-202 (207)
110 PRK00277 clpP ATP-dependent Cl 98.9 1.6E-08 3.6E-13 79.6 10.8 147 3-169 46-196 (200)
111 TIGR00705 SppA_67K signal pept 98.9 1.5E-08 3.3E-13 91.6 10.4 83 2-101 78-160 (584)
112 PF00574 CLP_protease: Clp pro 98.8 4.2E-09 9E-14 81.7 4.7 114 54-169 62-181 (182)
113 PRK14512 ATP-dependent Clp pro 98.8 3.7E-08 8.1E-13 77.4 10.0 113 55-169 70-188 (197)
114 CHL00028 clpP ATP-dependent Cl 98.8 5.7E-08 1.2E-12 76.5 9.8 115 56-170 78-197 (200)
115 KOG1683 Hydroxyacyl-CoA dehydr 98.8 9E-10 1.9E-14 92.4 -1.1 159 2-175 84-248 (380)
116 PRK10949 protease 4; Provision 98.8 4.8E-08 1E-12 88.7 9.9 83 2-101 97-179 (618)
117 TIGR00493 clpP ATP-dependent C 98.7 1.9E-07 4.2E-12 73.1 11.2 144 3-168 41-190 (191)
118 PRK14514 ATP-dependent Clp pro 98.7 2.1E-07 4.5E-12 74.2 10.9 113 57-169 103-219 (221)
119 PRK12551 ATP-dependent Clp pro 98.7 2.3E-07 4.9E-12 72.9 10.7 115 56-170 73-191 (196)
120 PRK14513 ATP-dependent Clp pro 98.7 2.1E-07 4.6E-12 73.2 10.0 115 56-170 75-193 (201)
121 PF01343 Peptidase_S49: Peptid 98.7 8.1E-08 1.8E-12 72.6 6.9 117 62-179 2-150 (154)
122 PRK12319 acetyl-CoA carboxylas 98.6 2.8E-06 6E-11 69.3 14.6 115 51-191 121-245 (256)
123 PF01972 SDH_sah: Serine dehyd 98.6 1.5E-06 3.4E-11 70.6 12.2 58 54-111 106-163 (285)
124 CHL00198 accA acetyl-CoA carbo 98.5 7.5E-06 1.6E-10 68.5 14.6 116 51-191 177-305 (322)
125 PLN03230 acetyl-coenzyme A car 98.4 1E-05 2.2E-10 69.6 14.5 117 51-192 244-373 (431)
126 TIGR00513 accA acetyl-CoA carb 98.4 1.4E-05 3.1E-10 66.8 14.1 116 51-191 174-302 (316)
127 COG0740 ClpP Protease subunit 98.4 3.1E-06 6.6E-11 66.2 9.2 115 57-171 76-194 (200)
128 COG1030 NfeD Membrane-bound se 98.3 6.1E-06 1.3E-10 71.2 11.0 141 2-169 42-188 (436)
129 PRK05724 acetyl-CoA carboxylas 98.3 2.9E-05 6.3E-10 65.1 14.3 94 51-169 174-267 (319)
130 PLN03229 acetyl-coenzyme A car 98.3 3.3E-05 7.1E-10 70.5 15.5 95 50-169 264-358 (762)
131 PRK12552 ATP-dependent Clp pro 98.3 7.8E-06 1.7E-10 65.2 9.7 115 55-169 96-214 (222)
132 TIGR03133 malonate_beta malona 98.1 0.00012 2.6E-09 60.2 13.6 84 60-170 131-218 (274)
133 PRK07189 malonate decarboxylas 97.9 0.00028 6E-09 58.8 11.4 42 60-102 140-183 (301)
134 TIGR03134 malonate_gamma malon 97.8 0.00045 9.8E-09 55.8 12.1 99 49-171 87-191 (238)
135 CHL00174 accD acetyl-CoA carbo 97.8 0.00088 1.9E-08 55.6 13.8 136 3-182 155-292 (296)
136 TIGR00515 accD acetyl-CoA carb 97.8 0.00083 1.8E-08 55.7 13.5 139 3-185 142-281 (285)
137 PRK05654 acetyl-CoA carboxylas 97.8 0.0011 2.5E-08 55.1 14.0 141 3-187 143-284 (292)
138 COG0777 AccD Acetyl-CoA carbox 97.5 0.0028 6.1E-08 51.7 12.0 140 3-188 144-286 (294)
139 PF01039 Carboxyl_trans: Carbo 97.5 0.0024 5.1E-08 57.1 12.2 129 3-184 79-217 (493)
140 TIGR01117 mmdA methylmalonyl-C 97.4 0.0053 1.2E-07 55.1 14.1 148 4-184 338-496 (512)
141 COG0825 AccA Acetyl-CoA carbox 97.4 0.00068 1.5E-08 55.7 7.0 93 52-169 174-266 (317)
142 TIGR01117 mmdA methylmalonyl-C 97.0 0.0093 2E-07 53.5 11.2 37 65-101 153-190 (512)
143 PLN02820 3-methylcrotonyl-CoA 96.7 0.043 9.4E-07 49.8 12.8 41 61-101 200-241 (569)
144 PLN02820 3-methylcrotonyl-CoA 96.1 0.037 8.1E-07 50.2 8.8 113 49-183 422-554 (569)
145 KOG0840 ATP-dependent Clp prot 96.0 0.041 9E-07 44.6 7.7 112 57-168 141-256 (275)
146 PF01039 Carboxyl_trans: Carbo 95.1 0.034 7.4E-07 49.7 5.0 123 49-185 350-480 (493)
147 COG4799 Acetyl-CoA carboxylase 93.5 0.28 6E-06 44.0 7.0 36 61-97 159-194 (526)
148 PF06833 MdcE: Malonate decarb 90.7 1.7 3.7E-05 35.0 7.8 93 53-169 92-187 (234)
149 COG4799 Acetyl-CoA carboxylase 88.4 0.94 2E-05 40.7 5.2 53 48-100 379-435 (526)
150 PF13607 Succ_CoA_lig: Succiny 88.3 2 4.3E-05 31.8 6.1 53 4-78 41-93 (138)
151 COG0074 SucD Succinyl-CoA synt 87.0 2.8 6.1E-05 34.8 6.8 54 4-78 187-240 (293)
152 KOG0540 3-Methylcrotonyl-CoA c 86.1 10 0.00022 33.6 9.9 77 16-103 383-462 (536)
153 PLN02522 ATP citrate (pro-S)-l 84.1 3 6.6E-05 38.3 6.2 53 4-78 209-262 (608)
154 PTZ00187 succinyl-CoA syntheta 83.6 3.6 7.7E-05 34.8 6.0 54 4-78 211-264 (317)
155 PF02601 Exonuc_VII_L: Exonucl 81.1 5 0.00011 33.6 6.1 75 3-97 58-136 (319)
156 smart00250 PLEC Plectin repeat 80.0 1.5 3.2E-05 24.8 1.8 18 148-165 18-35 (38)
157 TIGR00237 xseA exodeoxyribonuc 79.8 5.4 0.00012 35.2 6.1 81 3-102 173-255 (432)
158 COG1570 XseA Exonuclease VII, 76.9 6.8 0.00015 34.6 5.7 81 3-102 179-261 (440)
159 PLN00125 Succinyl-CoA ligase [ 76.1 8.4 0.00018 32.3 5.9 54 4-78 192-245 (300)
160 PF00549 Ligase_CoA: CoA-ligas 75.6 7.2 0.00016 29.4 4.9 62 4-79 60-121 (153)
161 PF00681 Plectin: Plectin repe 72.7 1.3 2.7E-05 26.1 0.2 20 147-166 17-36 (45)
162 TIGR01019 sucCoAalpha succinyl 71.9 13 0.00028 31.0 6.0 52 4-78 185-237 (286)
163 PF12268 DUF3612: Protein of u 69.2 5.3 0.00011 29.9 2.8 26 16-42 78-103 (178)
164 PRK05678 succinyl-CoA syntheta 68.6 16 0.00035 30.5 5.9 23 4-26 187-209 (291)
165 TIGR02717 AcCoA-syn-alpha acet 68.4 8.4 0.00018 34.1 4.4 53 4-78 190-242 (447)
166 PRK00286 xseA exodeoxyribonucl 67.1 16 0.00035 32.1 5.9 74 3-97 179-253 (438)
167 PRK06091 membrane protein FdrA 65.5 21 0.00045 32.6 6.3 52 5-78 240-291 (555)
168 KOG1255 Succinyl-CoA synthetas 58.3 36 0.00079 27.9 5.9 57 4-78 218-274 (329)
169 KOG4230 C1-tetrahydrofolate sy 56.2 26 0.00055 32.4 5.2 52 7-74 354-405 (935)
170 PRK02228 V-type ATP synthase s 55.5 66 0.0014 22.2 6.8 49 3-75 30-79 (100)
171 PF01990 ATP-synt_F: ATP synth 55.1 39 0.00085 22.9 5.0 51 3-77 28-79 (95)
172 COG1509 KamA Lysine 2,3-aminom 46.5 58 0.0013 28.1 5.6 25 2-26 143-167 (369)
173 PRK13505 formate--tetrahydrofo 46.4 41 0.00088 30.8 4.9 71 15-86 322-392 (557)
174 COG0793 Prc Periplasmic protea 40.5 6.6 0.00014 34.4 -0.9 85 3-88 219-309 (406)
175 KOG3179 Predicted glutamine sy 39.8 62 0.0013 25.8 4.4 46 16-76 58-103 (245)
176 KOG3040 Predicted sugar phosph 37.4 1.2E+02 0.0026 24.5 5.7 46 52-97 124-184 (262)
177 PF00763 THF_DHG_CYH: Tetrahyd 36.6 37 0.0008 24.1 2.6 24 3-26 73-96 (117)
178 PF00195 Chal_sti_synt_N: Chal 34.9 51 0.0011 26.5 3.4 76 4-99 107-184 (226)
179 smart00870 Asparaginase Aspara 33.3 1.6E+02 0.0035 24.8 6.4 24 2-25 62-85 (323)
180 PRK05665 amidotransferase; Pro 33.1 66 0.0014 26.0 3.9 26 51-76 76-101 (240)
181 TIGR00520 asnASE_II L-asparagi 32.5 1.3E+02 0.0029 25.7 5.8 24 2-25 90-113 (349)
182 PF04208 MtrA: Tetrahydrometha 30.6 56 0.0012 25.2 2.8 34 5-38 55-88 (176)
183 PRK14053 methyltransferase; Pr 30.3 65 0.0014 25.1 3.1 37 5-41 52-88 (194)
184 COG1618 Predicted nucleotide k 29.5 72 0.0016 24.6 3.2 25 52-76 116-140 (179)
185 PF04439 Adenyl_transf: Strept 29.3 52 0.0011 27.3 2.7 23 5-27 8-30 (282)
186 TIGR01101 V_ATP_synt_F vacuola 28.9 2.2E+02 0.0047 20.3 5.9 50 3-77 46-95 (115)
187 COG0252 AnsB L-asparaginase/ar 28.1 1.9E+02 0.0042 24.9 6.0 49 2-72 85-133 (351)
188 PRK02261 methylaspartate mutas 27.7 81 0.0017 23.1 3.2 30 155-185 106-135 (137)
189 COG0412 Dienelactone hydrolase 27.4 1.1E+02 0.0024 24.4 4.3 41 51-91 92-134 (236)
190 TIGR01111 mtrA N5-methyltetrah 27.1 76 0.0016 25.5 3.1 37 5-41 59-95 (238)
191 PRK00964 tetrahydromethanopter 25.7 82 0.0018 25.3 3.1 37 5-41 59-95 (225)
192 PRK14046 malate--CoA ligase su 25.7 4.5E+02 0.0097 22.9 8.0 65 3-84 296-360 (392)
193 PRK11096 ansB L-asparaginase I 24.8 2.1E+02 0.0046 24.5 5.7 21 3-25 88-108 (347)
194 PLN03037 lipase class 3 family 24.6 70 0.0015 29.1 2.8 27 67-93 316-342 (525)
195 cd00477 FTHFS Formyltetrahydro 24.2 1.7E+02 0.0038 26.6 5.1 76 15-91 305-381 (524)
196 PRK01395 V-type ATP synthase s 24.1 2.5E+02 0.0055 19.5 6.0 50 3-77 32-81 (104)
197 PF07302 AroM: AroM protein; 24.0 3.8E+02 0.0083 21.5 9.3 122 3-146 74-220 (221)
198 PRK11148 cyclic 3',5'-adenosin 23.3 2.5E+02 0.0055 22.7 5.8 57 3-78 40-97 (275)
199 TIGR00520 asnASE_II L-asparagi 23.1 4.8E+02 0.01 22.3 7.6 20 55-74 280-299 (349)
200 KOG0333 U5 snRNP-like RNA heli 23.0 1.5E+02 0.0033 27.2 4.5 32 66-97 350-382 (673)
201 PTZ00386 formyl tetrahydrofola 22.9 1.5E+02 0.0033 27.5 4.6 57 34-90 405-461 (625)
202 PF01738 DLH: Dienelactone hyd 22.6 1.6E+02 0.0034 22.6 4.3 39 52-90 79-119 (218)
203 PF01268 FTHFS: Formate--tetra 22.4 1.5E+02 0.0033 27.1 4.5 77 13-90 319-395 (557)
204 PF03464 eRF1_2: eRF1 domain 2 22.0 1E+02 0.0022 22.1 2.9 25 2-26 56-82 (133)
205 cd01741 GATase1_1 Subgroup of 21.9 1.4E+02 0.0031 22.5 3.8 25 53-77 68-92 (188)
206 PF02358 Trehalose_PPase: Treh 21.5 1.5E+02 0.0031 23.4 3.9 24 3-26 22-45 (235)
207 KOG1447 GTP-specific succinyl- 21.4 2.7E+02 0.0059 23.4 5.4 61 3-80 322-382 (412)
208 TIGR01016 sucCoAbeta succinyl- 21.0 3.9E+02 0.0085 22.9 6.7 21 3-23 296-316 (386)
209 TIGR00674 dapA dihydrodipicoli 20.8 4.7E+02 0.01 21.3 7.6 82 3-99 19-105 (285)
210 PRK13507 formate--tetrahydrofo 20.8 2.2E+02 0.0047 26.3 5.1 46 46-91 381-426 (587)
211 PF01583 APS_kinase: Adenylyls 20.6 2.8E+02 0.006 20.9 5.0 68 4-77 17-85 (156)
212 PLN00124 succinyl-CoA ligase [ 20.5 3.9E+02 0.0085 23.6 6.6 68 3-87 331-398 (422)
213 PRK00696 sucC succinyl-CoA syn 20.4 4.9E+02 0.011 22.3 7.2 22 3-24 296-317 (388)
214 PRK06490 glutamine amidotransf 20.3 1.9E+02 0.0041 23.2 4.3 24 53-76 73-96 (239)
215 PF05677 DUF818: Chlamydia CHL 20.1 2.6E+02 0.0057 24.2 5.2 70 9-89 163-235 (365)
No 1
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=6.4e-45 Score=296.10 Aligned_cols=180 Identities=72% Similarity=1.126 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++++++|+++|+|||||.++++||+|.|++++...+......+...++.++.++.++||||||+|||+|+||
T Consensus 23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG 102 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence 67899999999999999999999997678999999999875543333445566677888899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~ 167 (251)
T PLN02600 103 GLELALSCDLRICGEEAVFGLPETGLAIIPG---------------AGGTQRLPRLVGRSRAKELIFTGRRIGAREAASM 167 (251)
T ss_pred hHHHHHhCCEEEeeCCCEEeCcccccCcCCC---------------chHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus 168 Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K 202 (251)
T PLN02600 168 GLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAK 202 (251)
T ss_pred CCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 2
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-44 Score=295.79 Aligned_cols=180 Identities=36% Similarity=0.534 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.+++|+++|+|||+|.|+++||+|.|++++...+......+...+.+++.++.++||||||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 57899999999999999999999998558999999999875433332333445567788899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~ 174 (258)
T PRK09076 110 GLECALACDIRIAEEQAQMALPEASVGLLPC---------------AGGTQNLPWLVGEGWAKRMILCGERVDAATALRI 174 (258)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.+++++++..+|.+++.+|
T Consensus 175 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 209 (258)
T PRK09076 175 GLVEEVVEKGEAREAALALAQKVANQSPSAVAACK 209 (258)
T ss_pred CCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 3
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-45 Score=295.91 Aligned_cols=179 Identities=30% Similarity=0.525 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.++.|+++|+|||||.++++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 57899999999999999999999998557999999999875544333445566778888999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|+ |+ .++++++++++|..++++++++|++++++||+++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~---------------~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~ 178 (256)
T PRK06143 115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PS---------------VIHAALLPRLIGWARTRWLLLTGETIDAAQALAW 178 (256)
T ss_pred hHHHHHhCCEEEecCCCEEeCCccccCC-CC---------------ccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHC
Confidence 9999999999999999999999999998 77 7788999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 179 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 213 (256)
T PRK06143 179 GLVDRVVPLAELDAAVERLAASLAGCGPQALRQQK 213 (256)
T ss_pred CCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999886
No 4
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-44 Score=289.72 Aligned_cols=179 Identities=28% Similarity=0.449 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.+++++++.|+++|+||+||. |++||+|.|++++......+...+.+.+++++.++.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA 113 (222)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence 57899999999999999999999997 78999999999876543333333445567888999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|++.++++++|..++++++++|++++++||+++
T Consensus 114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~ 178 (222)
T PRK05869 114 GLTLALAADWRVSGDNVKFGATEILAGLAPS---------------GDGMARLTRAAGPSRAKELVFSGRFFDAEEALAL 178 (222)
T ss_pred HHHHHHhCCEEEecCCCEEcCchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence 9999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 179 Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K 213 (222)
T PRK05869 179 GLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAK 213 (222)
T ss_pred CCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999887
No 5
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-44 Score=295.22 Aligned_cols=180 Identities=33% Similarity=0.512 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+++|.++++.+++||++|+|||||.++++||+|.|++++.... ......+.+.+++++.++.++||||||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998557999999999875421 11234455566778888999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++|
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e 175 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPT---------------FGGTQRLPRLAGRKRALELLLTGDAFSAER 175 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCC---------------chHhhHHHhhcCHHHHHHHHHcCCccCHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 176 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 176 ALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999998775
No 6
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-44 Score=294.13 Aligned_cols=180 Identities=49% Similarity=0.802 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++++++|+++|+|||||.++++||+|.|++++...+......+...+++++..+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG 111 (260)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence 57899999999999999999999998556999999999875433333445556677888899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 176 (260)
T PRK07657 112 GLELALACDFRIAAESASLGLTETTLAIIPG---------------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEcCchhccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.+++++++..+|.+++.+|
T Consensus 177 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07657 177 GLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAK 211 (260)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 7
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-44 Score=291.51 Aligned_cols=177 Identities=34% Similarity=0.580 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.++ +++|+|||||. |++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T PRK08150 30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG 106 (255)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence 5789999999997 78999999998 68999999999886533322333445667788899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~ 171 (255)
T PRK08150 107 GLELASAAHIRVADESTYFALPEGQRGIFVG---------------GGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERL 171 (255)
T ss_pred HHHHHHhCCEEEEeCCCEEeccccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.++++++++.+|.+++.+|
T Consensus 172 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK08150 172 GLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVL 206 (255)
T ss_pred CCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 8
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=7.5e-44 Score=291.20 Aligned_cols=180 Identities=37% Similarity=0.598 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.+++|+++|+|||+|.|+++||+|.|++++...+......+.....+++.++.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 57899999999999999999999998548999999999876543333333445566788899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 176 (260)
T PRK05809 112 GCELSMACDIRIASEKAKFGQPEVGLGITPG---------------FGGTQRLARIVGPGKAKELIYTGDMINAEEALRI 176 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus 177 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 211 (260)
T PRK05809 177 GLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCK 211 (260)
T ss_pred CCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 9
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=5.8e-44 Score=291.27 Aligned_cols=179 Identities=27% Similarity=0.399 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.++.|+++|+|||||.++++||+|.|++++..... ....+...+.+++..+.++||||||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (256)
T TIGR03210 30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGG 108 (256)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHHHHHHHHhCCCCEEEEECCEEehh
Confidence 678999999999999999999999985589999999998743211 1111223456788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ .++++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~G~~~~---------------~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~ 173 (256)
T TIGR03210 109 GNVLVTICDLTIASEKAQFGQVGPKVGSVDP---------------GYGTALLARVVGEKKAREIWYLCRRYTAQEALAM 173 (256)
T ss_pred hHHHHHhCCEEEEeCCCEEecccccccccCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHc
Confidence 9999999999999999999999999999887 7778999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 174 Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K 208 (256)
T TIGR03210 174 GLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAK 208 (256)
T ss_pred CCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 10
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-44 Score=291.65 Aligned_cols=180 Identities=33% Similarity=0.501 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.+++++++.|+++|+|||+|.++++||+|.|++++.... ......+...+.+++.++.++||||||+|||+|+|
T Consensus 36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 115 (262)
T PRK06144 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG 115 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence 57899999999999999999999998557999999999875432 22233344567778889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeeccccc-ccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 80 GGLEMALACDLRICGEAALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
||++|+++||+||++++++|++||++ +|++|+ +|+++++++++|..++++++++|++++++||+
T Consensus 116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~ 180 (262)
T PRK06144 116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLS---------------MSNLARLVALLGAARVKDMLFTARLLEAEEAL 180 (262)
T ss_pred hHHHHHHhCCEEEecCCCEeechhHHhccCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHH
Confidence 99999999999999999999999997 999999 99999999999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 181 ~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K 217 (262)
T PRK06144 181 AAGLVNEVVEDAALDARADALAELLAAHAPLTLRATK 217 (262)
T ss_pred HcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 11
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=7.4e-44 Score=293.35 Aligned_cols=179 Identities=29% Similarity=0.431 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-C-h-h-hHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-S-P-S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~-~-~-~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++++.++.|+++|+|||||. |++||+|.|++++... . . . ....+...+..++..+.++||||||+|||+
T Consensus 36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 57899999999999999999999998 6899999999986432 1 1 1 122233345677888999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++|
T Consensus 115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~llltg~~~~A~e 179 (275)
T PRK09120 115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPG---------------GGVSKAMADTVGHRDALYYIMTGETFTGRK 179 (275)
T ss_pred EechhHHHHHhCCEEEEeCCcEecCCccccCCCCC---------------cchHHHHHHHcCHHHHHHHHhcCCccCHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+|+|++++.+++.+++++|++.||.+++.+|
T Consensus 180 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 218 (275)
T PRK09120 180 AAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAK 218 (275)
T ss_pred HHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 12
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-44 Score=292.18 Aligned_cols=179 Identities=28% Similarity=0.349 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+.+|.+++++++.|+++|+|||||. |++||+|.|++++.... ......+...+.+++..+.++||||||+|||+|+
T Consensus 40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 57899999999999999999999998 68999999999875422 2223334455677888899999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+
T Consensus 119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~ 183 (268)
T PRK07327 119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAG---------------DHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAE 183 (268)
T ss_pred ehhhHHHHhCCEEEecCCCEEeCcccccCCCCC---------------cchhhHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus 184 ~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 220 (268)
T PRK07327 184 RIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTK 220 (268)
T ss_pred HcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 13
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-43 Score=290.98 Aligned_cols=180 Identities=29% Similarity=0.501 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+++|.++++.++.|+++++|||+|.++++||+|.|++++... +......+......++..+.++|||||++|||+|+
T Consensus 39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 5789999999999999999999999855899999999987542 12223344555667888899999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+
T Consensus 119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~ 183 (269)
T PRK06127 119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYG---------------YDGVKNLVDLVGPSAAKDLFYTARRFDAAEAL 183 (269)
T ss_pred cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+|+|++++.+++.++|++++..||.+++.+|
T Consensus 184 ~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 220 (269)
T PRK06127 184 RIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAK 220 (269)
T ss_pred HcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999998876
No 14
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-43 Score=289.38 Aligned_cols=179 Identities=38% Similarity=0.618 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.+++++++.|+++|+|||+|. |++||+|.|++++..... .....+....++++.++.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G 107 (257)
T PRK07658 29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG 107 (257)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence 57899999999999999999999997 689999999998754332 2233344566778889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||++
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~ 172 (257)
T PRK07658 108 GGLELAMSCHIRFATESAKLGLPELNLGLIPG---------------FAGTQRLPRYVGKAKALEMMLTSEPITGAEALK 172 (257)
T ss_pred HHHHHHHhCCEEEecCCCcccCcccccCCCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 173 ~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK07658 173 WGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVL 208 (257)
T ss_pred cCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999998876
No 15
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-43 Score=290.82 Aligned_cols=179 Identities=30% Similarity=0.507 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC------hhh-HHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS------PSE-IHFYVNTLRSTFSFLEALPIPTIAVI 73 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav 73 (195)
|+++|.+++++++.||++|+|||+|. |++||+|.|++++.... ... ...+...+.+++.++.++|||+||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999999999999997 68999999999875321 111 12233345677888999999999999
Q ss_pred CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS 153 (195)
Q Consensus 74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 153 (195)
||+|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++
T Consensus 111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~ 175 (266)
T PRK09245 111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPG---------------DGGAWLLPRIIGMARAAEMAFTGDAID 175 (266)
T ss_pred CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCC---------------cchhhhHHHHhhHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 176 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK09245 176 AATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTK 217 (266)
T ss_pred HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999999876
No 16
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.1e-43 Score=290.01 Aligned_cols=180 Identities=28% Similarity=0.473 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.++++.++.|+++|+|||||.++++||+|.|++++..... .........+.+++..+.++||||||+|||+|+|
T Consensus 31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (259)
T TIGR01929 31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG 110 (259)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence 578999999999999999999999985489999999987642211 1110111124567778899999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +++++++++++|+.++++++++|++++++||++
T Consensus 111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~---------------~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~ 175 (259)
T TIGR01929 111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDG---------------GYGSSYLARIVGQKKAREIWFLCRQYDAEQALD 175 (259)
T ss_pred HHHHHHHhCCEEEecCCCEecCcccccccCCC---------------ccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHH
Confidence 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus 176 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 211 (259)
T TIGR01929 176 MGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLK 211 (259)
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999887
No 17
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-43 Score=289.38 Aligned_cols=177 Identities=33% Similarity=0.467 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.||++|+|||||. |++||+|.|++++......... ...+++++.++.++|||+||+|||+|+||
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~--~~~~~~~~~~i~~~~kPvIAaV~G~a~Gg 108 (258)
T PRK06190 32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA--QDALPNPSPAWPAMRKPVIGAINGAAVTG 108 (258)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH--HHHHHHHHHHHHhCCCCEEEEECCEeecH
Confidence 57899999999999999999999997 7899999999987543222111 23456788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~ 173 (258)
T PRK06190 109 GLELALACDILIASERARFADTHARVGILPG---------------WGLSVRLPQKVGIGRARRMSLTGDFLDAADALRA 173 (258)
T ss_pred HHHHHHhCCEEEEeCCCEEECcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.+++++++++||.+++.+|
T Consensus 174 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 208 (258)
T PRK06190 174 GLVTEVVPHDELLPRARRLAASIAGNNPAAVRALK 208 (258)
T ss_pred CCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 18
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-44 Score=289.89 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHH-HHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.++++++++|+++|+|||+|. |++||+|.|++++..........+.....+.+ ..+.++||||||+|||+|+|
T Consensus 27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK06563 27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence 57899999999999999999999998 68999999999875421111111222222223 35788999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||++
T Consensus 106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~ 170 (255)
T PRK06563 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPF---------------GGATLRFPQAAGWGNAMRYLLTGDEFDAQEALR 170 (255)
T ss_pred HHHHHHHhCCEEEecCCCEEeChhhhcCCCCC---------------ccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 171 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK06563 171 LGLVQEVVPPGEQLERAIELAERIARAAPLGVQATL 206 (255)
T ss_pred cCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999999999998876
No 19
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-43 Score=288.68 Aligned_cols=177 Identities=34% Similarity=0.542 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.|+++|+|||+|. |+.||+|.|++++...+.. ..+...+.+++.++..+||||||+|||+|+||
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg 108 (257)
T PRK05862 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYITNWEKVARIRKPVIAAVAGYALGG 108 (257)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence 57899999999999999999999997 7899999999987543221 12223445577889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 173 (257)
T PRK05862 109 GCELAMMCDIIIAADTAKFGQPEIKLGVLPG---------------MGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERA 173 (257)
T ss_pred HHHHHHHCCEEEEeCCCEEeCchhccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 174 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK05862 174 GLVSRVVPADKLLDEALAAATTIASFSLPAVMMAK 208 (257)
T ss_pred CCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 20
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-43 Score=288.38 Aligned_cols=178 Identities=23% Similarity=0.351 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.+++|+++|+||++|. |++||+|.|++++...... ...+...+++++.++.++||||||+|||+|+||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (251)
T PRK06023 34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIALAEAEKPIVSGVDGLAIGI 111 (251)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHHHHhCCCCEEEEeCCceecH
Confidence 67899999999999999999999997 6899999999987542211 112334566788899999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 112 G~~la~acD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~ 176 (251)
T PRK06023 112 GTTIHLHCDLTFASPRSLFRTPFVDLALVPE---------------AGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEA 176 (251)
T ss_pred HHHHHHhCCEEEEeCCCEecCcccccCCCCC---------------chHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|.+++.+++.+++++++..||.+++.+|
T Consensus 177 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 211 (251)
T PRK06023 177 GLIWKIVDEEAVEAETLKAAEELAAKPPQALQIAR 211 (251)
T ss_pred CCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 21
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-43 Score=291.04 Aligned_cols=179 Identities=26% Similarity=0.422 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-----------hhhHHHHHHHHHHHHHHHHcCCCcE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-----------PSEIHFYVNTLRSTFSFLEALPIPT 69 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 69 (195)
|+.+|.+++++++.|+++|+|||||. |++||+|.|++++.... ......+...+.+++..+..+||||
T Consensus 34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 112 (272)
T PRK06142 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV 112 (272)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999997 68999999999874310 1122234455677888899999999
Q ss_pred EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcC
Q 029329 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTG 149 (195)
Q Consensus 70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g 149 (195)
||+|||+|+|||++|+++||+||++++++|++||+++|++|+ .|+++++++++|..++++++++|
T Consensus 113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~G~~~a~~l~l~g 177 (272)
T PRK06142 113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVAD---------------VGSLQRLPRIIGDGHLRELALTG 177 (272)
T ss_pred EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCC---------------chHHHHHHHHhCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 150 RKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 150 ~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++++++||+++||||+|+|+ +++.+++.++++++++.||.+++.+|
T Consensus 178 ~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 178 RDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTK 224 (272)
T ss_pred CCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999996 88999999999999999999999876
No 22
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=286.79 Aligned_cols=177 Identities=41% Similarity=0.682 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.+++..+++|+++.++|+||. ++.||+|.|++++......+.. ...+.+.+..+.+.+||+|+++||+|+||
T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG 141 (290)
T KOG1680|consen 65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG 141 (290)
T ss_pred HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence 47899999999999999999999998 7999999999998654322211 11223334444489999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|++.||+|||.++++|++++.++|++|. +|++++|+|.+|.++|+++++||++++++||+++
T Consensus 142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~---------------~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~ 206 (290)
T KOG1680|consen 142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPS---------------WGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKI 206 (290)
T ss_pred chhhhhhcceEeccCCCeecccccccCCccC---------------CCchhhHHHHhChHHHHHHHHhcCcccHHHHHhC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|||++|+|.++++++|.+|+++|+++||.++++.|
T Consensus 207 GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 207 GLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred CceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998865
No 23
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.2e-43 Score=288.55 Aligned_cols=179 Identities=30% Similarity=0.498 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.|+++|+||+||.++++||+|.|++++...+... ..+.......+.++..+||||||+|||+|+||
T Consensus 30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (261)
T PRK03580 30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG 108 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999998558999999999875432211 11212223456788899999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~ 173 (261)
T PRK03580 109 GFELALAADFIVCADNASFALPEAKLGIVPD---------------SGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRW 173 (261)
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 174 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 208 (261)
T PRK03580 174 GIVNRVVPQAELMDRARELAQQLVNSAPLAIAALK 208 (261)
T ss_pred CCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 24
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=2.4e-43 Score=287.45 Aligned_cols=177 Identities=37% Similarity=0.582 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.+++|+++|+|||||. |++||+|.|++++...+.. ..+.....+++.++..+||||||+|||+|+||
T Consensus 30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (255)
T PRK09674 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGA 106 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 57899999999999999999999997 6899999999987543221 12223445678889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 171 (255)
T PRK09674 107 GCELALLCDIVIAGENARFGLPEITLGIMPG---------------AGGTQRLIRSVGKSLASQMVLTGESITAQQAQQA 171 (255)
T ss_pred HHHHHHhCCEEEecCCCEEeCchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 172 Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K 206 (255)
T PRK09674 172 GLVSEVFPPELTLERALQLASKIARHSPLALRAAK 206 (255)
T ss_pred CCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 25
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.6e-43 Score=290.15 Aligned_cols=179 Identities=30% Similarity=0.513 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-----------hhHHHHHHHHHHHHHHHHcCCCcE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 69 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 69 (195)
|+++|.++++.++.|+++|+|||+|. |++||+|.|++++..... .....+...+++++.++.++||||
T Consensus 36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 114 (275)
T PLN02664 36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999997 689999999998753211 112233455667888899999999
Q ss_pred EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcC
Q 029329 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTG 149 (195)
Q Consensus 70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g 149 (195)
||+|||+|+|||++|+++||+||++++++|++||+++|+.|+ +|+++++++++|..++++++++|
T Consensus 115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~A~~l~ltg 179 (275)
T PLN02664 115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD---------------LGTLQRLPSIVGYGNAMELALTG 179 (275)
T ss_pred EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 150 RKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 150 ~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++++++||+++||||+|+|+ +++.+.+.+++++|++.||.+++.+|
T Consensus 180 ~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K 226 (275)
T PLN02664 180 RRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226 (275)
T ss_pred CCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999995 88999999999999999999999876
No 26
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-43 Score=287.56 Aligned_cols=177 Identities=36% Similarity=0.579 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.+++|+++|+|||+|. |+.||+|.|++++...+. ...+...+++++.++.++|||+||+|||+|+||
T Consensus 36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 112 (261)
T PRK08138 36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG 112 (261)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence 57899999999999999999999997 789999999998754321 223344566788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 177 (261)
T PRK08138 113 GCELAMHADIIVAGESASFGQPEIKVGLMPG---------------AGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAI 177 (261)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccccCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 178 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 212 (261)
T PRK08138 178 GLVSEVVEDEQTLPRALELAREIARMPPLALAQIK 212 (261)
T ss_pred CCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998876
No 27
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-43 Score=287.47 Aligned_cols=179 Identities=27% Similarity=0.467 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+++|.++++++++|+++|+|||+|. ++.||+|.|++++... +......+...+++++.++.++||||||+|||+|
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999997 6899999999987542 2223344556778888999999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA 174 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPD---------------GGGSWFLARALPRQLATELLLEGKPISAERL 174 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCC---------------chHHHHHHHHhCHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 175 ~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K 212 (260)
T PRK07511 175 HALGVVNRLAEPGQALAEALALADQLAAGSPNALARIK 212 (260)
T ss_pred HHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 28
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.3e-43 Score=287.54 Aligned_cols=178 Identities=29% Similarity=0.447 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++.... ......+.+.+.+++.++.++||||||+|||+|+|
T Consensus 39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (266)
T PRK08139 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA 117 (266)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 57899999999999999999999998 68999999999875432 22233445566778889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ ++ .+++++++|..++++++++|++++++||++
T Consensus 118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~ 181 (266)
T PRK08139 118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCS---------------TP-MVALSRNVPRKQAMEMLLTGEFIDAATARE 181 (266)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCC---------------cc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999999999999999999987 64 567999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 182 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 217 (266)
T PRK08139 182 WGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGK 217 (266)
T ss_pred cCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999876
No 29
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=3.5e-43 Score=286.67 Aligned_cols=178 Identities=29% Similarity=0.467 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh--hh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.++++++++|+ +|+|||||. |++||+|.|++++..... .+ ...+...+..++.++..+||||||+|||+|
T Consensus 27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 5789999999999998 999999997 689999999998754211 11 112223345677889999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA 169 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPD---------------SGGTWSLPRLVGRARAMGLAMLGEKLDARTA 169 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 170 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K 207 (256)
T TIGR02280 170 ASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTK 207 (256)
T ss_pred HHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 30
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-43 Score=288.65 Aligned_cols=179 Identities=30% Similarity=0.419 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-------hhhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp~Iaav 73 (195)
|+++|.++++++++|+++|+|||+|. |++||+|.|++++.... ......+...+++++.++.++||||||+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 116 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999997 68999999999864211 11112233456677888999999999999
Q ss_pred CCcccchhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCC
Q 029329 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKV 152 (195)
Q Consensus 74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~ 152 (195)
||+|+|||++|+++||+||++++++|++||+++|++| . +|+++++++++|..++++++++|+++
T Consensus 117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~---------------~g~~~~l~~~vG~~~A~~l~l~g~~~ 181 (276)
T PRK05864 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASE---------------LGLSYLLPRAIGSSRAFEIMLTGRDV 181 (276)
T ss_pred CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCC---------------cchheehHhhhCHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999999997 6 78889999999999999999999999
Q ss_pred CHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 153 ~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||+++||||+|+|++++.+++.++|++|+..||.+++.+|
T Consensus 182 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 224 (276)
T PRK05864 182 DAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTK 224 (276)
T ss_pred CHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998876
No 31
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-43 Score=285.49 Aligned_cols=177 Identities=29% Similarity=0.432 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.+++||++|+|||+|. |++||+|.|++++..............+.+.+..+.++|||||++|||+|+||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA 109 (249)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence 57899999999999999999999998 68999999999876432222233345566677889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|+.++++++++|++++++||+++
T Consensus 110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~ 174 (249)
T PRK05870 110 GLNLALAADVRIAGPKALFDARFQKLGLHPG---------------GGATWMLQRAVGPQVARAALLFGMRFDAEAAVRH 174 (249)
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCcCCC---------------CcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++ +++.+++.++++++++.||.+++.+|
T Consensus 175 Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K 207 (249)
T PRK05870 175 GLALMVA--DDPVAAALELAAGPAAAPRELVLATK 207 (249)
T ss_pred CCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999 67999999999999999999999887
No 32
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-43 Score=286.19 Aligned_cols=178 Identities=28% Similarity=0.461 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC---hhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.+++++++ |+++++|||+|. |++||+|.|++++.... ... ...+...+..++.++.++||||||+|||+
T Consensus 32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 5789999999999 999999999998 68999999999874321 111 11222334567788999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++|
T Consensus 110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e 174 (262)
T PRK08140 110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPD---------------SGGTWFLPRLVGMARALGLALLGEKLSAEQ 174 (262)
T ss_pred eehhHHHHHHhCCEEEecCCCEEeccccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus 175 A~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K 213 (262)
T PRK08140 175 AEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIK 213 (262)
T ss_pred HHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999998876
No 33
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=5.9e-43 Score=287.75 Aligned_cols=179 Identities=27% Similarity=0.474 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++...+ ........ ...+++..+.++||||||+|||+|+
T Consensus 41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence 57899999999999999999999998547999999999864321 11111111 2345677889999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||++|+++||+||++++++|++||+++|++|+ ++++.++++++|..++++++++|++++++||+
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~ 184 (273)
T PRK07396 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG---------------GYGASYLARIVGQKKAREIWFLCRQYDAQEAL 184 (273)
T ss_pred hHHHHHHHhCCEEEeeCCcEEecccccccccCC---------------chHHHHHHHHhhHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999999999999999999999998 88899999999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus 185 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 221 (273)
T PRK07396 185 DMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLK 221 (273)
T ss_pred HcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999887
No 34
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-43 Score=286.20 Aligned_cols=178 Identities=28% Similarity=0.452 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++... +..........+.+++.++.++||||||+|||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 57899999999999999999999998 6899999999987432 1111222234567788899999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +++. ++++++|..++++++++|++++++||
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA 174 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPA---------------TISP-YVIRAMGERAARRYFLTAERFDAAEA 174 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCcc---------------chHH-HHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999998 7654 58899999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 175 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 212 (262)
T PRK05995 175 LRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGK 212 (262)
T ss_pred HHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 35
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-43 Score=285.91 Aligned_cols=178 Identities=32% Similarity=0.553 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.|+++|+|||+|. |++||+|.|++++....... ..+...+++++.++.++|||+||+|||+|+||
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV 110 (259)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence 57899999999999999999999998 68999999999876533222 34556678888999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~ 175 (259)
T PRK06688 111 GVSLALACDLVYASESAKFSLPFAKLGLCPD---------------AGGSALLPRLIGRARAAEMLLLGEPLSAEEALRI 175 (259)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCC---------------cchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 176 Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K 210 (259)
T PRK06688 176 GLVNRVVPAAELDAEADAQAAKLAAGPASALRYTK 210 (259)
T ss_pred CCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998776
No 36
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.9e-43 Score=285.28 Aligned_cols=179 Identities=43% Similarity=0.717 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++|+.++.|+++|+||++|. ++.||+|.|++++...+.+....+.+.+++++.++..+||||||+|||+|.|+
T Consensus 26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg 104 (245)
T PF00378_consen 26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG 104 (245)
T ss_dssp HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence 57899999999999999999999886 89999999999987766666778889999999999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++++++||+||++++++|++||+++|++|+ +|+++++++++|.+.+++++++|++++++||+++
T Consensus 105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~ 169 (245)
T PF00378_consen 105 GFELALACDFRIAAEDAKFGFPEVRLGIFPG---------------AGGTFRLPRLIGPSRARELLLTGEPISAEEALEL 169 (245)
T ss_dssp HHHHHHHSSEEEEETTTEEETGGGGGTSSST---------------STHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHT
T ss_pred ccccccccceEEeecccceeeeecccCcccc---------------cccccccceeeecccccccccccccchhHHHHhh
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.+++++++..|+.+++.+|
T Consensus 170 Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 170 GLVDEVVPDEELDEEALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp TSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 37
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.4e-43 Score=285.56 Aligned_cols=177 Identities=33% Similarity=0.487 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.++.|+++|+|||+|.++++||+|.|++++......... ...+..+. .+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~--~~~~~~~~-~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP--ESGFGGLT-SRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh--hHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence 5789999999999999999999999855799999999987543221110 11222333 34589999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~ 173 (259)
T PRK06494 109 GFELALACDLIVAAENATFALPEPRVGLAAL---------------AGGLHRLPRQIGLKRAMGMILTGRRVTAREGLEL 173 (259)
T ss_pred HHHHHHhCCEEEEeCCCEEeCcccccCCCCC---------------chHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++|++++.+++.+++++++..||.+++.+|
T Consensus 174 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 208 (259)
T PRK06494 174 GFVNEVVPAGELLAAAERWADDILACSPLSIRASK 208 (259)
T ss_pred CCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-43 Score=287.85 Aligned_cols=179 Identities=22% Similarity=0.370 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.+++++++.|+++|+|||||. |++||+|.|++++... +......+...+.+++..+.++||||||+|||+
T Consensus 45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999999999999997 6899999999987431 122233445556778889999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 155 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~ 155 (195)
|+|||++|+++||+||++++++|++||+++|++| + +|+++++++++|..++++++++|++++++
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~ 188 (277)
T PRK08258 124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGAD---------------MGACALLPRIIGQGRASELLYTGRSMSAE 188 (277)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999985 6 78899999999999999999999999999
Q ss_pred HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 189 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 228 (277)
T PRK08258 189 EGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTK 228 (277)
T ss_pred HHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 39
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-43 Score=284.75 Aligned_cols=179 Identities=22% Similarity=0.369 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-Ch---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++++.++.|+++++||++|. |++||+|.|++++... .. .....+.+.+++++.++.++||||||+|||+
T Consensus 30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 57899999999999999999999997 6899999999987532 11 1222344556778889999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ .|+++++++++|..++++++++|++++++|
T Consensus 109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e 173 (255)
T PRK07260 109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPD---------------AGGLFLLTRAIGLNRATHLAMTGEALTAEK 173 (255)
T ss_pred eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCC---------------CchhhhhHHhhCHHHHHHHHHhCCccCHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+++|++++.+++.++++++++.+|.+++.+|
T Consensus 174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 174 ALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred HHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 40
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5e-43 Score=287.02 Aligned_cols=178 Identities=26% Similarity=0.383 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..... .........+.+++..+.++||||||+|||+|
T Consensus 34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 67899999999999999999999998 689999999998743211 11112234456788889999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +++. ++++++|..++++++++|++++++||
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~---------------~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA 176 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPA---------------VISP-FVVKAIGERAARRYALTAERFDGRRA 176 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcc---------------hhHH-HHHHHhCHHHHHHHHHhCcccCHHHH
Confidence 9999999999999999999999999999999998 7654 58899999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 177 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 214 (265)
T PRK05674 177 RELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASK 214 (265)
T ss_pred HHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 41
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=7.6e-43 Score=285.39 Aligned_cols=178 Identities=22% Similarity=0.458 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCC-CCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++++++++|+ +|+|||||.+ +++||+|.|++++..... +...+...+++++..+..+||||||+|||+|+|
T Consensus 32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~G 109 (261)
T PRK11423 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-DPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWG 109 (261)
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-cHHHHHHHHHHHHHHHHhCCCCEEEEEecEEec
Confidence 5789999999999988 9999999963 589999999998753221 122344566788889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +|+++++++++|+.++++++++|++++++||++
T Consensus 110 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~ 174 (261)
T PRK11423 110 GAFELIMSCDLIIAASTSTFAMTPANLGVPYN---------------LSGILNFTNDAGFHIVKEMFFTASPITAQRALA 174 (261)
T ss_pred hHHHHHHhCCEEEecCCCEecCchhhcCCCCC---------------ccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHH
Confidence 99999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 175 ~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 210 (261)
T PRK11423 175 VGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_pred cCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999999999999876
No 42
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-42 Score=289.04 Aligned_cols=179 Identities=28% Similarity=0.388 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---C--------------hhhHHHHHHHHHHHHHHHH
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S--------------PSEIHFYVNTLRSTFSFLE 63 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~ 63 (195)
|+.+|.++|+.++.|+++|+|||||. |++||+|.|++++... . ......+...+.+++.++.
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (296)
T PRK08260 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110 (296)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999997 6899999999986420 0 0011223344566788899
Q ss_pred cCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHH
Q 029329 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAK 143 (195)
Q Consensus 64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~ 143 (195)
.+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..+++
T Consensus 111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~ 175 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE---------------AASSWFLPRLVGLQTAL 175 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC---------------cchhhhHHHhhCHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329 144 DIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 195 (195)
Q Consensus 144 ~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k 195 (195)
+++++|++++++||+++||||+|+|++++.+++.+++++++++ +|.+++.+|
T Consensus 176 ~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K 228 (296)
T PRK08260 176 EWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR 228 (296)
T ss_pred HHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999999999999999999995 999998876
No 43
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-42 Score=284.76 Aligned_cols=176 Identities=28% Similarity=0.453 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.++.|+++|+|||||. |++||+|.|++++........ .....+++..+.++||||||+|||+|+||
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 57899999999999999999999998 689999999997643111111 11234566778899999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~ 178 (265)
T PLN02888 114 GFEIALACDILVASRGAKFIDTHAKFGIFPS---------------WGLSQKLSRIIGANRAREVSLTAMPLTAETAERW 178 (265)
T ss_pred HHHHHHhCCEEEecCCCEecCccccccCCCC---------------ccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 179 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 179 GLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred CCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999887
No 44
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.4e-42 Score=286.06 Aligned_cols=180 Identities=25% Similarity=0.351 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCC-CCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.++++++++|+++|+|||||.+ +++||+|.|++++.... ......+.....+++.++.++||||||+|||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 578999999999999999999999984 27999999999875321 111223334445677889999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccc-cCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~-~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
+|||++|+++||+||++++++|++||+++|+ +|+ .++++++++++|..++++++++|++++++|
T Consensus 119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~---------------~~~~~~l~~~~G~~~a~~llltg~~~~a~e 183 (278)
T PLN03214 119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPK---------------FWARLFMGRVIDRKVAESLLLRGRLVRPAE 183 (278)
T ss_pred cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCC---------------hhHHHHHHHhcCHHHHHHHHHcCCccCHHH
Confidence 9999999999999999999999999999999 588 888999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+|+|.+++.+++.+++++++..+|.+++.+|
T Consensus 184 A~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 222 (278)
T PLN03214 184 AKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATK 222 (278)
T ss_pred HHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 45
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-42 Score=284.20 Aligned_cols=178 Identities=32% Similarity=0.542 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH-H-H-H-HHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-H-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~-~-~-~-~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++...+.... . . + ...+.. +.++..+||||||+|||+
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGP 110 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCe
Confidence 67899999999999999999999998 689999999998754321111 1 1 1 122222 335778999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|. +|+++++++++|..++++++++|++++++|
T Consensus 111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e 175 (263)
T PRK07799 111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPM---------------GGSAVRLVRQIPYTVACDLLLTGRHITAAE 175 (263)
T ss_pred EeccHHHHHHhCCEEEecCCCEecCcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 176 A~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K 214 (263)
T PRK07799 176 AKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAIL 214 (263)
T ss_pred HHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999999999999999999998876
No 46
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-42 Score=282.69 Aligned_cols=178 Identities=26% Similarity=0.392 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++... +..........+..++..+..+||||||+|||+|
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 57899999999999999999999997 6899999999987431 1112222334566788889999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++ +++|..++++++++|++++++||
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA 175 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPA---------------TISPYVV-ARMGEANARRVFMSARLFDAEEA 175 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcc---------------cchhhHH-hhccHHHHHHHHHhCCccCHHHH
Confidence 9999999999999999999999999999999998 8887744 56999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||+|+|.+++.+++.++++++++.+|.+++.+|
T Consensus 176 ~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K 213 (262)
T PRK07468 176 VRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAK 213 (262)
T ss_pred HHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 47
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-42 Score=281.53 Aligned_cols=175 Identities=32% Similarity=0.478 Sum_probs=156.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.|+++|+|||+|. |++||+|.|++++...+.... ....+..++ ...+||||||+|||+|+||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~--~~~~~kPvIaav~G~a~Gg 105 (254)
T PRK08252 31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPSI--PGRGFGGLT--ERPPRKPLIAAVEGYALAG 105 (254)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchhh--hHHHHHHHH--HhcCCCCEEEEECCEEehH
Confidence 67899999999999999999999997 689999999998754321111 111222222 1469999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 106 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~ 170 (254)
T PRK08252 106 GFELALACDLIVAARDAKFGLPEVKRGLVAA---------------GGGLLRLPRRIPYHIAMELALTGDMLTAERAHEL 170 (254)
T ss_pred HHHHHHhCCEEEEeCCCEEeCchhhcCCCCC---------------chHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 171 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 171 GLVNRLTEPGQALDAALELAERIAANGPLAVAASK 205 (254)
T ss_pred CCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 48
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-42 Score=283.53 Aligned_cols=179 Identities=27% Similarity=0.471 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCC-CcEEEEEEeCCCCceEeccCcchhhcCCh------hhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329 1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKERRQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~Iaav 73 (195)
|+.+|.++++.++.|+ ++|+|||||. |++||+|.|++++..... .....+...+++++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK05981 32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6789999999999876 4999999997 689999999998753211 1122344556778889999999999999
Q ss_pred CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS 153 (195)
Q Consensus 74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 153 (195)
||+|+|||++|+++||+||++++++|++||.++|++|+ +|+++++++++|+.++++++++|++++
T Consensus 111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~ 175 (266)
T PRK05981 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPD---------------GGSTWLLPRLVGKARAMELSLLGEKLP 175 (266)
T ss_pred CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCC---------------ccHHHHHHHHhHHHHHHHHHHhCCCcC
Confidence 99999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 176 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK05981 176 AETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIR 217 (266)
T ss_pred HHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876
No 49
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-42 Score=280.70 Aligned_cols=176 Identities=26% Similarity=0.392 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...+. .........+.+++..+.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 107 (249)
T PRK07938 29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG 107 (249)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence 67899999999999999999999997 689999999998754321 2222233455677888999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++++ +.++++++|+.++++++++|++++++||++
T Consensus 108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~------------------~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~ 169 (249)
T PRK07938 108 GGIGLVGNADVIVASDDATFGLPEVDRGALGA------------------ATHLQRLVPQHLMRALFFTAATITAAELHH 169 (249)
T ss_pred hHHHHHHhCCEEEEeCCCEeeCccceecCchh------------------HHHHHHhcCHHHHHHHHHhCCcCCHHHHHH
Confidence 99999999999999999999999999998644 567899999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 170 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 205 (249)
T PRK07938 170 FGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAK 205 (249)
T ss_pred CCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999998876
No 50
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-42 Score=282.68 Aligned_cols=177 Identities=37% Similarity=0.524 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.+++|+++|+|||||. |++||+|.|++++...+...... .........+.++|||||++|||+|+||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg 107 (254)
T PRK08259 31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG 107 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence 67899999999999999999999997 68999999999875432211110 0011112233479999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|. +|+++++++++|..++++++++|++++++||+++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~ 172 (254)
T PRK08259 108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLI---------------DGGTVRLPRLIGHSRAMDLILTGRPVDADEALAI 172 (254)
T ss_pred HHHHHHhCCEEEecCCCEecCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus 173 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 207 (254)
T PRK08259 173 GLANRVVPKGQARAAAEELAAELAAFPQTCLRADR 207 (254)
T ss_pred CCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999876
No 51
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.6e-42 Score=280.47 Aligned_cols=176 Identities=25% Similarity=0.443 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.+++++++.|+++|+|||+|+ |++||+|.|++++....... ..+. . ++++..+.++||||||+|||+|+||
T Consensus 33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~-~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-HHHHHHHHcCCCCEEEEecCceech
Confidence 57899999999999999999999997 68999999999875432221 1222 2 5678889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||.++|++|+ .|+++++++++|..++++++++|++++++||+++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~ 173 (249)
T PRK07110 109 GLVLGLYADIVVLSRESVYTANFMKYGFTPG---------------MGATAILPEKLGLALGQEMLLTARYYRGAELKKR 173 (249)
T ss_pred HHHHHHhCCEEEEeCCCEecCchhccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence 9999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 174 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 174 GVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLK 208 (249)
T ss_pred CCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999877
No 52
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.3e-42 Score=281.09 Aligned_cols=178 Identities=40% Similarity=0.659 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc-CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++++.++.|+++|+|||||+ |++||+|.|++.+.. .+......+....+.++.++.++||||||+|||+|+|
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (257)
T COG1024 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG 111 (257)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence 67899999999999999999999998 599999999999874 2222222566777789999999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +|++++++|++|..++++++++|++++++||++
T Consensus 112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg---------------~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~ 176 (257)
T COG1024 112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPG---------------DGGTQRLPRLLGRGRAKELLLTGEPISAAEALE 176 (257)
T ss_pred chhhhhhcCCeEEecCCcEecCcccccccCCC---------------CcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHH
Confidence 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||++++. +++.+.+++++++++. +|.+++.+|
T Consensus 177 ~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k 212 (257)
T COG1024 177 LGLVDEVVPDAEELLERALELARRLAA-PPLALAATK 212 (257)
T ss_pred cCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 9999999986 7999999999999999 888888765
No 53
>PLN02921 naphthoate synthase
Probab=100.00 E-value=4.2e-42 Score=288.33 Aligned_cols=180 Identities=27% Similarity=0.452 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHH-HHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++............. ...+++..+.++||||||+|||+|+|
T Consensus 95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G 174 (327)
T PLN02921 95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG 174 (327)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence 57899999999999999999999998558999999998764321110111111 13456778899999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|. +++++++++++|..++++++++|++++|+||++
T Consensus 175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~---------------~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~ 239 (327)
T PLN02921 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDA---------------GYGSSIMARLVGQKKAREMWFLARFYTASEALK 239 (327)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHH
Confidence 99999999999999999999999999999998 888999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.+++++|++++|.+++.+|
T Consensus 240 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K 275 (327)
T PLN02921 240 MGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLK 275 (327)
T ss_pred CCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999999999999999887
No 54
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-42 Score=281.40 Aligned_cols=177 Identities=33% Similarity=0.457 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++++++ .|+++|+||++|. |+.||+|.|++++...+ ......+...+++++.++..+||||||+|||+|+|
T Consensus 34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G 111 (260)
T PRK07659 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG 111 (260)
T ss_pred HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence 578999999999 5889999999997 68999999999875432 23334556677888889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||++
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~ 176 (260)
T PRK07659 112 LGLSIALTADYVIADISAKLAMNFIGIGLIPD---------------GGGHFFLQKRVGENKAKQIIWEGKKLSATEALD 176 (260)
T ss_pred HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCC---------------CchhhhHHHhcCHHHHHHHHHhCCccCHHHHHH
Confidence 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+++ ++++.+++.++++++++.||.+++.+|
T Consensus 177 ~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07659 177 LGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETK 211 (260)
T ss_pred cCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999 788999999999999999999998876
No 55
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-42 Score=280.49 Aligned_cols=176 Identities=32% Similarity=0.565 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+++|.++++++++|+++|+|||+|. |++||+|.|++++... .......+...+++++.++.++||||||+|||+|+
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 57899999999999999999999997 6899999999987543 12223334455677888999999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||++|+++||+||++++++|++||+++|+.++ ++++++++|..++++++++|++++++||+
T Consensus 110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~------------------~~~l~~~~g~~~a~~lll~g~~~~a~eA~ 171 (257)
T PRK06495 110 GAGLGLVASCDIIVASENAVFGLPEIDVGLAGG------------------GKHAMRLFGHSLTRRMMLTGYRVPAAELY 171 (257)
T ss_pred hhHHHHHHhCCEEEecCCCEeeChhhccCcccc------------------HHHHHHHhCHHHHHHHHHcCCeeCHHHHH
Confidence 999999999999999999999999999999643 56689999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 172 ~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 172 RRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred HcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999886
No 56
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-42 Score=282.28 Aligned_cols=179 Identities=30% Similarity=0.504 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH------HHH----HHHHHHHHHHHHcCCCcEE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI------HFY----VNTLRSTFSFLEALPIPTI 70 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~I 70 (195)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++........ ..+ ...+++++..+.++|||||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (272)
T PRK06210 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI 112 (272)
T ss_pred HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence 57899999999999999999999997 689999999998754221100 111 1123556778999999999
Q ss_pred EEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCC
Q 029329 71 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGR 150 (195)
Q Consensus 71 aav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~ 150 (195)
|+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|+.++++++++|+
T Consensus 113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~ltg~ 177 (272)
T PRK06210 113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAE---------------HGISWILPRLVGHANALDLLLSAR 177 (272)
T ss_pred EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCC---------------CchhhhhHhhhCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329 151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 195 (195)
Q Consensus 151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k 195 (195)
+++++||+++||||+++|++++.+++.++++++++. +|.++..+|
T Consensus 178 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 178 TFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred ccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999985 999998876
No 57
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.5e-41 Score=279.08 Aligned_cols=176 Identities=26% Similarity=0.431 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHhhc-----CCCcEEEEEEeCCCCceEeccCcchhhcC--C--hhhHHHHHHHHHHHHHHHH---cCCCc
Q 029329 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQM--S--PSEIHFYVNTLRSTFSFLE---ALPIP 68 (195)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~--~~~~~~~~~~~~~~~~~~~---~~~kp 68 (195)
|+++|.++++++++ |+++|+|||+|.+|++||+|.|++++... . ......+...+.+.+.++. .+|||
T Consensus 44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP 123 (287)
T PRK08788 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI 123 (287)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57899999999998 89999999999867899999999987431 1 1111122222233333333 79999
Q ss_pred EEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHc
Q 029329 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT 148 (195)
Q Consensus 69 ~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~ 148 (195)
|||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++
T Consensus 124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~---------------~g~~~~l~~~vG~~~A~elllt 188 (287)
T PRK08788 124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPG---------------MGAYSFLARRVGPKLAEELILS 188 (287)
T ss_pred EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCC---------------chHHHHHHHHhhHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred CCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHH
Q 029329 149 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 192 (195)
Q Consensus 149 g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~ 192 (195)
|++++++||+++||||+++|++++.+++.+++++++.. |.+.+
T Consensus 189 G~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~ 231 (287)
T PRK08788 189 GKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR 231 (287)
T ss_pred CCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH
Confidence 99999999999999999999999999999999999976 44333
No 58
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-41 Score=271.28 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.++++.++ +++++||++|. |++||+|.|++++... ......+...+.+++.++.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg 105 (229)
T PRK06213 30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAK 105 (229)
T ss_pred HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHH
Confidence 5789999999988 46799999998 6999999999987543 333445566778888999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
|++|+++||+||++++ ++|++||+++|++|+ .++..++++++|...+++++++|++++++||++
T Consensus 106 G~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~---------------~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~ 170 (229)
T PRK06213 106 GAFLLLSADYRIGVHGPFKIGLNEVAIGMTMP---------------HAAIELARDRLTPSAFQRAVINAEMFDPEEAVA 170 (229)
T ss_pred HHHHHHhCCeeeEecCCcEEECchhhhCCcCC---------------hHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHH
Confidence 9999999999999999 999999999999887 777888899999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus 171 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 206 (229)
T PRK06213 171 AGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATK 206 (229)
T ss_pred CCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999877
No 59
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.9e-41 Score=273.24 Aligned_cols=173 Identities=27% Similarity=0.428 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.++.||++|+|||||. |++||+|.|++++.. .....+...+.+++.++.++||||||+|||+|+||
T Consensus 28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 57899999999999999999999998 689999999987531 11122344566788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ + +++++++++|..++++++++|++++++||+++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~ 167 (251)
T TIGR03189 104 GLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP---------------A-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARI 167 (251)
T ss_pred HHHHHHhCCEEEEcCCCEEeCchhhcCCCCC---------------c-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence 9999999999999999999999999999987 5 46789999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHH-HHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEI-AQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~-a~~~~~~~~~~~~~~k 195 (195)
||||+|+|+++ +++.++ +++++++||.+++.+|
T Consensus 168 Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 168 GLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred CCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998643 566665 7999999999998876
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-41 Score=275.81 Aligned_cols=177 Identities=29% Similarity=0.471 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH---HH----HHHHHHHHHHHHHcCCCcEEEEE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HF----YVNTLRSTFSFLEALPIPTIAVI 73 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~kp~Iaav 73 (195)
|+++|.++++.++.|+++|+|||+|. |++||+|.|++++........ .. ....+.+++.++.++||||||+|
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav 109 (262)
T PRK07509 31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109 (262)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999998 689999999998754321111 11 12234556677889999999999
Q ss_pred CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS 153 (195)
Q Consensus 74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 153 (195)
||+|+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++
T Consensus 110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~l~ltg~~~~ 174 (262)
T PRK07509 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPD---------------MAGTVSLRGLVRKDVARELTYTARVFS 174 (262)
T ss_pred CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||+++||||+++++ +.+++.++++++++.||.+++.+|
T Consensus 175 a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K 214 (262)
T PRK07509 175 AEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAK 214 (262)
T ss_pred HHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999854 678999999999999999998876
No 61
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1e-40 Score=277.87 Aligned_cols=180 Identities=28% Similarity=0.450 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCC------CceEeccCcchhhcC-------Ch-h--hHHHHH-HHHHHHHHHHH
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKERRQM-------SP-S--EIHFYV-NTLRSTFSFLE 63 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~Dl~~~~~~-------~~-~--~~~~~~-~~~~~~~~~~~ 63 (195)
|+.+|.++++.++.|+++++|||||.|+ ++||+|.|++++... +. . ...... ....++...+.
T Consensus 53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (302)
T PRK08321 53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR 132 (302)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999842 699999999875321 00 0 000111 11234566788
Q ss_pred cCCCcEEEEECCcccchhHHHhhhCCEEEEe-CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329 64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA 142 (195)
Q Consensus 64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~-~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a 142 (195)
++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+ +++++++++++|..++
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~---------------~~~~~~L~r~vG~~~A 197 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG---------------GYGSAYLARQVGQKFA 197 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC---------------chHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999999 68999999999999998 8899999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 143 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 143 ~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++++++|++++|+||+++||||+++|++++.+++.+++++|++.+|.+++.+|
T Consensus 198 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 198 REIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred HHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876
No 62
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.4e-41 Score=282.49 Aligned_cols=179 Identities=26% Similarity=0.515 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++++.++.||++|+|||||.|+++||+|.|++++.... ......++....+++.++.++|||+||+|||+
T Consensus 31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998558999999999875321 11111344445577888999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ +|++++++++.| ..+++++++|++++++|
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~---------------~g~~~~L~r~~g-~~a~~llltG~~i~A~e 174 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPD---------------VGGTYFLSRAPG-ALGTYLALTGARISAAD 174 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCC---------------ccceeEehhccc-HHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999 999999999877 68999999999999999
Q ss_pred HHhcCccceecCCChHHHH-------------------------------------------------------------
Q 029329 157 AMSLGLVNYYVPAGQAQLK------------------------------------------------------------- 175 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~------------------------------------------------------------- 175 (195)
|+++||||+++|++++.+.
T Consensus 175 A~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 254 (342)
T PRK05617 175 ALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGE 254 (342)
T ss_pred HHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHH
Confidence 9999999999999888776
Q ss_pred -HHHHHHHHhhcCHHHHHhhC
Q 029329 176 -ALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 176 -a~~~a~~~~~~~~~~~~~~k 195 (195)
+.+++++|+++||.+++.+|
T Consensus 255 ~a~~~a~~i~~~sp~a~~~~k 275 (342)
T PRK05617 255 FAAKTADTLRSRSPTSLKVTL 275 (342)
T ss_pred HHHHHHHHHHhCCcHHHHHHH
Confidence 88999999999999999876
No 63
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=261.54 Aligned_cols=180 Identities=54% Similarity=0.848 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.+..|+.+|+|++++.-++.||+|.||++..++++++...|++.++.++..+.++|.||||+++|.++||
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 67899999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++++++||+|+++.+++++++|.+++++|+ .|++++++|.+|.+.++|+++|++.+++.||..+
T Consensus 139 GLElALACDiRva~s~akmGLvET~laiiPG---------------aGGtQRLpR~vg~alaKELIftarvl~g~eA~~l 203 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVETKLAIIPG---------------AGGTQRLPRIVGVALAKELIFTARVLNGAEAAKL 203 (291)
T ss_pred chhhhhhccceehhhhccccccccceeeecC---------------CCccchhHHHHhHHHHHhHhhhheeccchhHHhc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccceecCCC----hHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAG----QAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~----~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+++... ...+.++++|++|.-+.|.++++.|
T Consensus 204 GlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aK 242 (291)
T KOG1679|consen 204 GLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAK 242 (291)
T ss_pred chHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHH
Confidence 9999999764 5678899999999999999999876
No 64
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-40 Score=272.34 Aligned_cols=176 Identities=23% Similarity=0.393 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--Chhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.++++.++.|+++|+|||+|. |+.||+|.|++++... ++.. ...+...+.+++.++..+||||||+|||+|
T Consensus 34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 57899999999999999999999998 6899999999987542 2221 223455677888899999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|++++++++. ..++++++++|++++++||
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA 176 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPA---------------IISLTLLPRLS-PRAAARYYLTGEKFGAAEA 176 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCC---------------cccchhHHhhh-HHHHHHHHHhCCccCHHHH
Confidence 9999999999999999999999999999999999 99999999875 5689999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+++||||++++ ++.+++.++++++++.||.+++.+|
T Consensus 177 ~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K 212 (260)
T PRK07827 177 ARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESK 212 (260)
T ss_pred HHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999974 5889999999999999999999887
No 65
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-40 Score=274.68 Aligned_cols=177 Identities=30% Similarity=0.469 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-------------------hh---hHHHHHHHHHHH
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------------------PS---EIHFYVNTLRST 58 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-------------------~~---~~~~~~~~~~~~ 58 (195)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++.... .. ........+.++
T Consensus 32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (288)
T PRK08290 32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM 110 (288)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 57899999999999999999999998 68999999999763210 00 011122345567
Q ss_pred HHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc
Q 029329 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG 138 (195)
Q Consensus 59 ~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig 138 (195)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+ . +.+++++++|
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~---------------~-~~~~l~~~iG 173 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG---------------V-EYFAHPWELG 173 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc---------------c-hHHHHHHHhh
Confidence 77889999999999999999999999999999999999999999999998 44 3 3566789999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 139 KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 139 ~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+.++++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 174 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 230 (288)
T PRK08290 174 PRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230 (288)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876
No 66
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-40 Score=269.32 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+++|.++++.++.|+++|+|||+|. |+.||+|.|++++.... ...+.+.+.+++..+.++||||||+|||+|+||
T Consensus 28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999997 68999999999874321 123344566788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|. ++++++++|++++++||+++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~---------------~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~ 167 (248)
T PRK06072 104 CIGIALSTDFKFASRDVKFVTAFQRLGLASD---------------TGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERW 167 (248)
T ss_pred HHHHHHhCCEEEEcCCCEEecchhhcCcCCC---------------chHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHC
Confidence 9999999999999999999999999999999 8999999999997 89999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||++ +++.+++.++|+++++.||.+++.+|
T Consensus 168 Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 168 GLLKIS---EDPLSDAEEMANRISNGPFQSYIAAK 199 (248)
T ss_pred CCcccc---chHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999964 46789999999999999999998876
No 67
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-40 Score=267.80 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
|+.+|.+++++++.+ ++|+|||||. |++||+|.|+++... ...+...+.+++.++.++||||||+|||+|+||
T Consensus 28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 578999999999865 9999999997 689999999985211 123345567788889999999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
|++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||+++
T Consensus 101 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~ 165 (243)
T PRK07854 101 GLQLAMACDLRVVAPEAYFQFPVAKYGIALD---------------NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALAT 165 (243)
T ss_pred HHHHHHhCCEEEEcCCCEEeccccccccCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||||+|++ + +++.++++++++.||.+++.+|
T Consensus 166 Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~~~K 196 (243)
T PRK07854 166 GMANRIGT---L-ADAQAWAAEIAGLAPLALQHAK 196 (243)
T ss_pred CCcccccC---H-HHHHHHHHHHHhCCHHHHHHHH
Confidence 99999965 2 3899999999999999998876
No 68
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-40 Score=276.47 Aligned_cols=176 Identities=26% Similarity=0.365 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-----------------------h--HHHHHHHH
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----------------------E--IHFYVNTL 55 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-----------------------~--~~~~~~~~ 55 (195)
|+.+|.+++++++.|+++|+|||+|. |++||+|.|++++...... . ...+...+
T Consensus 38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08272 38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116 (302)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence 67899999999999999999999998 6899999999987532110 0 01234556
Q ss_pred HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhh
Q 029329 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPR 135 (195)
Q Consensus 56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~ 135 (195)
++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|.+|+ . ..+++
T Consensus 117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~---------------~---~~~~~ 178 (302)
T PRK08272 117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPA---------------T---GMWAY 178 (302)
T ss_pred HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCCh---------------H---HHHHH
Confidence 67788899999999999999999999999999999999999999999999865565 3 24677
Q ss_pred hhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 136 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 136 ~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++|..++++++++|++++++||+++||||+++|++++.+++.++|++|+..||.+++.+|
T Consensus 179 ~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 179 RLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred HhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999876
No 69
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.3e-39 Score=272.57 Aligned_cols=179 Identities=24% Similarity=0.339 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.+++++++.|+++++|||||.++++||+|.|++++... ++.....+.+.+++++.++..+||||||+|||+|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 6789999999999999999999999854799999999987542 2233344555667788899999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++|+||
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~---------------~Ggt~rLprlvG~~rA~~llltGe~~sA~EA 200 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPI---------------GGATDFLPLMIGCEQAMVSGTLCEPWSAHKA 200 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCC---------------ccHHHHHHHhhCHHHHHHHHHhCCcCcHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChH------------HHHHHHHHHHHhhcCHH--HHHhh
Q 029329 158 MSLGLVNYYVPAGQA------------QLKALEIAQEINQKVQS--VFRIL 194 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~------------~~~a~~~a~~~~~~~~~--~~~~~ 194 (195)
+++||||+|+|++++ .+.+.++++.+...++. ++++.
T Consensus 201 ~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T TIGR03200 201 KRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG 251 (360)
T ss_pred HHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence 999999999999887 67777788888887766 44443
No 70
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-39 Score=270.93 Aligned_cols=175 Identities=21% Similarity=0.286 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcch-hhc----C--Ch--hhHHHH---HH---HHHHHHHHHHcC
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQ----M--SP--SEIHFY---VN---TLRSTFSFLEAL 65 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~-~~~----~--~~--~~~~~~---~~---~~~~~~~~~~~~ 65 (195)
|+++|.+++++++.|+++|+|||||. |++||+|.|+++ +.. . +. .....+ .. .....+..+.++
T Consensus 33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (298)
T PRK12478 33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA 111 (298)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence 57899999999999999999999998 689999999986 211 0 00 001111 01 112356678899
Q ss_pred CCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccc-cccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHH
Q 029329 66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKD 144 (195)
Q Consensus 66 ~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~-G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~ 144 (195)
||||||+|||+|+|||++|+++||+||++++++|++||+++ |+.+. . + +.+++|..++++
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~---------------~--~--~~~~vG~~~A~~ 172 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT---------------G--M--WLYRLSLAKVKW 172 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch---------------h--H--HHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999997 87654 2 2 235699999999
Q ss_pred HHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 145 IIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 145 l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++++|++++|+||+++||||+|+|++++.+++.++|++++..||.+++.+|
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887
No 71
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.3e-39 Score=278.82 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......++...+++..++.++|||+||+|||+
T Consensus 65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence 68899999999999999999999998 58999999999875321 11223344445557778999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||++|+++||+||++++++|++||+++|++|+ +|++++++|++|. .++++++||++++++|
T Consensus 144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd---------------~G~s~~L~rl~G~-~a~~L~LTG~~i~A~e 207 (401)
T PLN02157 144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPD---------------AGASFNLSHLPGR-LGEYLGLTGLKLSGAE 207 (401)
T ss_pred EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCC---------------ccHHHHHHHhhhH-HHHHHHHcCCcCCHHH
Confidence 99999999999999999999999999999999999 9999999999996 7999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+++||||+++|++++ +++.+++++++..+|.+++.+|
T Consensus 208 A~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~~~k 245 (401)
T PLN02157 208 MLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVESCL 245 (401)
T ss_pred HHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998 6788999999999998887665
No 72
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-39 Score=264.73 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-h-HHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-E-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+++|.++++.++ +++|+||++|. |++||+|.|++++...... . .......+.+++.++.++||||||+|||+|+
T Consensus 32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 108 (255)
T PRK07112 32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN 108 (255)
T ss_pred HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence 5789999999998 36999999997 7899999999987542111 1 1112344567888899999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||++|+++||+||++++++|++||+++|++|+ ++ ..++++++|..++++++++|++++++||+
T Consensus 109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~ 172 (255)
T PRK07112 109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPA---------------CV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAF 172 (255)
T ss_pred cchhHHHHcCCEEEEcCCCEEeCchhhhccCcc---------------hh-hHHHHHHhCHHHHHHHHHhCCcccHHHHH
Confidence 999999999999999999999999999999987 64 46799999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++||||+++|+++. .+.++++++++.+|.+++.+|
T Consensus 173 ~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K 207 (255)
T PRK07112 173 SWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYK 207 (255)
T ss_pred HcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHH
Confidence 99999999997653 578899999999999999876
No 73
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.9e-39 Score=277.35 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+.+|.++++.++.|++||+|||+|. |++||+|.|++++.... ......+....+.++.++.++|||+||+|||+|+
T Consensus 39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 67899999999999999999999998 68999999999875321 1222233334455677889999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|||+.|+++||+||++++++|++||+++|++|+ .|+++++++++|. .++++++||++++++||+
T Consensus 118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~---------------~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~ 181 (379)
T PLN02874 118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTD---------------CGFSYILSRLPGH-LGEYLALTGARLNGKEMV 181 (379)
T ss_pred ecHHHHHHhCCeEEEeCCeEEeccccccCcCCC---------------hhHHHHHHhhhHH-HHHHHHHcCCcccHHHHH
Confidence 999999999999999999999999999999999 9999999999885 899999999999999999
Q ss_pred hcCccceecCCChHHH
Q 029329 159 SLGLVNYYVPAGQAQL 174 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~ 174 (195)
++||||+++|++++.+
T Consensus 182 ~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 182 ACGLATHFVPSEKLPE 197 (379)
T ss_pred HcCCccEEeCHHHHHH
Confidence 9999999999888755
No 74
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=3.8e-39 Score=260.36 Aligned_cols=178 Identities=22% Similarity=0.400 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhhcCCCcE-EEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+++|.+++++++.|++++ +||++|. |+.||+|.|++++... .......+...+.+++.++.++||||||+|||+|
T Consensus 27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 5789999999999999976 6666776 7899999999987532 1222233455677788899999999999999999
Q ss_pred cchhHHHhhhCCEEEEeC-CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH-HHHHHcCCCCCHH
Q 029329 78 LGGGLEMALACDLRICGE-AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA-KDIIFTGRKVSGK 155 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~-~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a-~~l~l~g~~~~a~ 155 (195)
+|||++|+++||+||+++ +++|++||.++|+.++ .++++++++++|..++ ++++++|++++++
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p---------------~~~~~~l~~~vG~~~a~~~llltG~~~~a~ 170 (239)
T PLN02267 106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLP---------------DYFMALLRAKIGSPAARRDVLLRAAKLTAE 170 (239)
T ss_pred hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCC---------------hHHHHHHHHHcChHHHHHHHHHcCCcCCHH
Confidence 999999999999999985 5899999999999733 4457789999999999 6999999999999
Q ss_pred HHHhcCccceecCC-ChHHHHHHHHHHHHhhc--CHHHHHhh
Q 029329 156 DAMSLGLVNYYVPA-GQAQLKALEIAQEINQK--VQSVFRIL 194 (195)
Q Consensus 156 eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~--~~~~~~~~ 194 (195)
||+++||||+++|+ +++.+++.++|+++++. ++.++..+
T Consensus 171 eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~ 212 (239)
T PLN02267 171 EAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASI 212 (239)
T ss_pred HHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHH
Confidence 99999999999985 68999999999999997 44444443
No 75
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.2e-38 Score=282.33 Aligned_cols=180 Identities=19% Similarity=0.164 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhhc-CCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC-Cccc
Q 029329 1 MLRGLKHAFETISE-DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~-G~a~ 78 (195)
|+.+|.+++++++. |+++|+|||||.|++.||+|.|++.....+..........++.++.++.++||||||+|| |+|+
T Consensus 303 ~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~ 382 (550)
T PRK08184 303 MARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCF 382 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCcee
Confidence 57899999999986 799999999997325999999986432212111123334556678899999999999997 9999
Q ss_pred chh-HHHhhhCCEEEEe-------CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh-hcHHHHHHH--HH
Q 029329 79 GGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL-VGKSVAKDI--IF 147 (195)
Q Consensus 79 ggG-~~la~~~D~~va~-------~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~-ig~~~a~~l--~l 147 (195)
||| ++|+++||+||++ ++++|++||+++|++|+ +|++++++++ +|..+++++ ++
T Consensus 383 GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~---------------~gg~~~L~r~~vG~~~A~~~~l~~ 447 (550)
T PRK08184 383 AGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPM---------------VNGLSRLARRFYGEPDPLAAVRAK 447 (550)
T ss_pred hhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCC---------------CCcHHHhHHHhcChHHHHHHHHHH
Confidence 999 9999999999999 99999999999999999 9999999998 699999997 58
Q ss_pred cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 148 TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 148 ~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
+|++++++||+++||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus 448 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 448 IGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred hCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2e-38 Score=280.24 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCc-eEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEE-CCcc
Q 029329 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav-~G~a 77 (195)
|+.+|.+++++++ +|+++|+|||||. |+. ||+|.|++.....+...........++++.++..+|||+||+| ||+|
T Consensus 299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 5789999999998 5699999999997 566 9999999843222221222333445668889999999999999 8999
Q ss_pred cchh-HHHhhhCCEEEE-------eCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh-cHHHH--HHHH
Q 029329 78 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV-GKSVA--KDII 146 (195)
Q Consensus 78 ~ggG-~~la~~~D~~va-------~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i-g~~~a--~~l~ 146 (195)
+||| ++|+++||++|+ +++++|++||+++|++|+ +|+++++++++ |..++ ++++
T Consensus 378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~---------------~gg~~~L~~~v~G~~~a~~~~~~ 442 (546)
T TIGR03222 378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPM---------------VNGLSRLATRFYAEPAPVAAVRD 442 (546)
T ss_pred eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCC---------------cCcHHHHHHHhcCchhHHHHHHH
Confidence 9999 999999999999 899999999999999999 99999999998 98888 5699
Q ss_pred HcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 147 FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 147 l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
++|++++++||+++|||++++|++++.+++.++|+++++.||.+++.+|
T Consensus 443 ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 443 KIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred HhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876
No 77
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=253.61 Aligned_cols=179 Identities=29% Similarity=0.563 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-----C-------hhhHHHHHHHHHHHHHHHHcCCCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-----S-------PSEIHFYVNTLRSTFSFLEALPIP 68 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~kp 68 (195)
||.|+.++++.+.+||++|+|||+|. |+.||+|+|++.+... + .....+++..+++.+..|.+||||
T Consensus 50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP 128 (292)
T KOG1681|consen 50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP 128 (292)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence 68999999999999999999999998 8999999998876432 1 123567788899999999999999
Q ss_pred EEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc-HHHHHHHHH
Q 029329 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG-KSVAKDIIF 147 (195)
Q Consensus 69 ~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig-~~~a~~l~l 147 (195)
+|+++||+|+|+|+.|..+||+|++++++.|+..|+.+|+..+ .|...++|+.+| .++++++.+
T Consensus 129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaAD---------------vGTL~RlpkvVGn~s~~~elaf 193 (292)
T KOG1681|consen 129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAAD---------------VGTLNRLPKVVGNQSLARELAF 193 (292)
T ss_pred HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhc---------------hhhHhhhhHHhcchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 999999999999 899999999
Q ss_pred cCCCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 148 TGRKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 148 ~g~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|++.++|.||++.|||.+|+|+ +++...+..+|+.|+.++|.+..-+|
T Consensus 194 Tar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 194 TARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred hhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence 9999999999999999999998 67889999999999999998876554
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.5e-38 Score=288.18 Aligned_cols=170 Identities=37% Similarity=0.594 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+++|.++++.++.|+++|+|||||. |++||+|.|++++... +......+...+++++.++.++|||+||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 57899999999999999999999998 6899999999987542 2222334556677888899999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++|+||
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~rlvG~~~A~~llltG~~~~A~eA 178 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPG---------------FGGTVRLPRLIGADNALEWIAAGKDVRAEDA 178 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC---------------chHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQK 186 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~ 186 (195)
+++||||+++|++++.+++.++|++++..
T Consensus 179 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 179 LKVGAVDAVVAPEKLQEAALALLKQAIAG 207 (715)
T ss_pred HHCCCCeEecCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999976
No 79
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=6e-38 Score=267.64 Aligned_cols=176 Identities=21% Similarity=0.414 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-Ch---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++... .. .....++.....+..++.++|||+||++||+
T Consensus 37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence 68899999999999999999999998 5899999999987532 11 1122333333445667889999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||+.|+++||+||++++++|++||+++|++|+ .|++++++|++|. .++++++||++++++|
T Consensus 116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd---------------~G~s~~L~rl~G~-~~~~l~LTG~~i~a~e 179 (381)
T PLN02988 116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPD---------------VGASYFLSRLPGF-FGEYVGLTGARLDGAE 179 (381)
T ss_pred EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCC---------------ccHHHHHHHHHHH-HHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999 9999999999997 6899999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhh
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL 194 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 194 (195)
|+++||+|+++|++++.+.+.+++ +++..+|.++...
T Consensus 180 A~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~ 216 (381)
T PLN02988 180 MLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTI 216 (381)
T ss_pred HHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHH
Confidence 999999999999999999888888 7777777776544
No 80
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.7e-37 Score=241.70 Aligned_cols=167 Identities=46% Similarity=0.798 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh--HHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE--IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+++|.++++.+++|+++++|||||. ++.||+|.|++++....... ...+.+.+++++.++..+|||+|+++||+|.
T Consensus 27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 57899999999999999999999998 89999999999987654433 5677889999999999999999999999999
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~ 158 (195)
|+|+.++++||+||++++++|++||+++|+.|+ .|.++++++++|...+++++++|++++++||+
T Consensus 106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~---------------~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~ 170 (195)
T cd06558 106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPG---------------GGGTQRLPRLVGPARARELLLTGRRISAEEAL 170 (195)
T ss_pred cHHHHHHHhCCEEEecCCCEEechhhhcCCCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCccceecCCChHHHHHHHHHHHH
Q 029329 159 SLGLVNYYVPAGQAQLKALEIAQEI 183 (195)
Q Consensus 159 ~~Glvd~v~~~~~~~~~a~~~a~~~ 183 (195)
++||||++++.+++.+++.++++++
T Consensus 171 ~~Glv~~~~~~~~l~~~a~~~a~~~ 195 (195)
T cd06558 171 ELGLVDEVVPDEELLAAALELARRL 195 (195)
T ss_pred HcCCCCeecChhHHHHHHHHHHhhC
Confidence 9999999999999999999988763
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3e-37 Score=282.00 Aligned_cols=167 Identities=41% Similarity=0.700 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+++|.+++++++.|+++|+|||+|.+++.||+|.|++++.... ......+...+++++.++.++||||||+|||+|+|
T Consensus 35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 114 (708)
T PRK11154 35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG 114 (708)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 57899999999999999999999987668999999999875432 22233445566778899999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 80 gG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
||++|+++||+||++++ ++|++||+++|++|+ +|+++++++++|..++++++++|++++++||
T Consensus 115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~---------------~gg~~~L~r~vG~~~A~~llltG~~i~a~eA 179 (708)
T PRK11154 115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG---------------SGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179 (708)
T ss_pred hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCC---------------ccHHhHHHhhcCHHHHHHHHHhCCcCCHHHH
Confidence 99999999999999997 489999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHH
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQE 182 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~ 182 (195)
+++||||+++|++++.+++.++|++
T Consensus 180 ~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 180 LKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred HHCCCCcEecChHHHHHHHHHHHHh
Confidence 9999999999999999999999988
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=7.4e-37 Score=278.94 Aligned_cols=177 Identities=39% Similarity=0.633 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.++|++++.|+++|+|||++..+++||+|.|++++... +......+....++++.++.++||||||+|||+|+|
T Consensus 30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G 109 (699)
T TIGR02440 30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG 109 (699)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 5789999999999999999999754347899999999987542 222333445567788889999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 80 gG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
||++|+++||+||++++ ++|++||+++|++|+ +|+++++++++|..++++++++|++++++||
T Consensus 110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~---------------~g~~~~L~r~vG~~~A~~llltG~~~~a~eA 174 (699)
T TIGR02440 110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPG---------------SGGTQRLPRLIGVSTALDMILTGKQLRAKQA 174 (699)
T ss_pred HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCC---------------ccHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence 99999999999999986 799999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHH-------------HHhhcCHHHHH
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQ-------------EINQKVQSVFR 192 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~-------------~~~~~~~~~~~ 192 (195)
+++||||+++|++++.+++.++|+ ++++.+|.+.+
T Consensus 175 ~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 175 LKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred HhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 999999999999999999999998 67777666644
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8.9e-37 Score=278.64 Aligned_cols=169 Identities=38% Similarity=0.610 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
|+.+|.+++++++.|+++|+|||+|. ++.||+|.|++++... +......+.+..++++.++.++||||||+|||+|
T Consensus 35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 6899999999988542 2223334555677888999999999999999999
Q ss_pred cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+|||++|+++||+||++++++|++||+++|++|+ +|+++++++++|..++++++++|++++++||
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg---------------~Ggt~rL~rliG~~~A~~llltG~~~~A~eA 178 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPG---------------FGGTVRLPRVIGADNALEWIASGKENRAEDA 178 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCccceecCCChHHHHHHHHHHHHhh
Q 029329 158 MSLGLVNYYVPAGQAQLKALEIAQEINQ 185 (195)
Q Consensus 158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~ 185 (195)
+++||||+++|++++.+++.++++++..
T Consensus 179 ~~~GLvd~vv~~~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 179 LKVGAVDAVVTADKLGAAALQLLKDAIN 206 (714)
T ss_pred HHCCCCcEeeChhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988554
No 84
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.5e-36 Score=259.97 Aligned_cols=173 Identities=23% Similarity=0.420 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|+.+|.++|+.++.|+++++|||+|+ |++||+|.|++.+... +......++...+++...+.++|||+||++||+
T Consensus 70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 68899999999999999999999998 5899999999987542 123344566677788888999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|+|||+.|+++||+||++++++|++||+++|++|+ .|++++++|+.|.. ++++++||++++++|
T Consensus 149 amGGG~gLal~~D~rVate~a~famPE~~iGl~Pd---------------vG~s~~L~rl~g~~-g~~L~LTG~~i~a~e 212 (407)
T PLN02851 149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPD---------------AGASYYLSRLPGYL-GEYLALTGQKLNGVE 212 (407)
T ss_pred EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCC---------------ccHHHHHHHhcCHH-HHHHHHhCCcCCHHH
Confidence 99999999999999999999999999999999999 99999999999984 999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHH
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~ 191 (195)
|+++||+|+++|++++ +.+.+.+.++...++.++
T Consensus 213 A~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 213 MIACGLATHYCLNARL-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred HHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHH
Confidence 9999999999999887 667777777766555443
No 85
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-36 Score=267.95 Aligned_cols=174 Identities=26% Similarity=0.354 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHH---HHH-HHHHHHHHHHHcCCCcEEEEECC
Q 029329 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---FYV-NTLRSTFSFLEALPIPTIAVIDG 75 (195)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~kp~Iaav~G 75 (195)
|+.+|.++|++++ .|+++|+|||||.++++||+|.|++++......... .+. .....+...+.++||||||+|||
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG 128 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG 128 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 799999999998757899999999987432111111 111 11233455677899999999999
Q ss_pred cccchhHHHhhhCCEEEEeCC--ceeeccccc-ccccCCCCCccchhhhhhcccCCccchhh--hhhcHHHHHHHHHcCC
Q 029329 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLP--RLVGKSVAKDIIFTGR 150 (195)
Q Consensus 76 ~a~ggG~~la~~~D~~va~~~--a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~--~~ig~~~a~~l~l~g~ 150 (195)
+|+|||++|+++||+||++++ ++|++||++ +|++|+ +|+++++. +.+|..++++++++|+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~---------------~gg~~~l~~~~~vg~~~A~~llltG~ 193 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG---------------TGGLTRVTDKRRVRRDHADIFCTIEE 193 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc---------------cchhhhccccchhCHHHHHHHHHcCC
Confidence 999999999999999999987 799999997 999999 88888887 6999999999999999
Q ss_pred CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHH
Q 029329 151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 189 (195)
Q Consensus 151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~ 189 (195)
+++++||+++||||+++|++++.+++.++|+++++.||.
T Consensus 194 ~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 194 GVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred CccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998874
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3e-36 Score=267.06 Aligned_cols=174 Identities=28% Similarity=0.385 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHH---HHH-HHHHHHHHHcCCCcEEEEECC
Q 029329 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFY---VNT-LRSTFSFLEALPIPTIAVIDG 75 (195)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~kp~Iaav~G 75 (195)
|+.+|.+++++++ +|+++|+|||||.++++||+|.|++.+..........+ ... ...+...+.++||||||+|||
T Consensus 53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG 132 (550)
T PRK08184 53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG 132 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 78999999999976789999999998754221111111 111 122445677899999999999
Q ss_pred cccchhHHHhhhCCEEEEeCC--ceeeccccc-ccccCCCCCccchhhhhhcccCCccchhh--hhhcHHHHHHHHHcCC
Q 029329 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLP--RLVGKSVAKDIIFTGR 150 (195)
Q Consensus 76 ~a~ggG~~la~~~D~~va~~~--a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~--~~ig~~~a~~l~l~g~ 150 (195)
+|+|||++|+++|||||++++ ++|++||++ +|++|+ +|+++++. +++|..++++++++|+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~---------------~gg~~rl~~~~~vg~~~A~~llltG~ 197 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPG---------------TGGLTRVTDKRKVRRDLADIFCTIEE 197 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCC---------------cchHHHhhhhhhcCHHHHHHHHHhCC
Confidence 999999999999999999987 899999997 999999 88888888 7899999999999999
Q ss_pred CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHH
Q 029329 151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 189 (195)
Q Consensus 151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~ 189 (195)
+++++||+++||||+++|++++.+++.++|++|+++||.
T Consensus 198 ~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 198 GVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred cccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998874
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.2e-35 Score=271.92 Aligned_cols=169 Identities=34% Similarity=0.598 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEE-EEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
|+.+|.+++++++.|+++|++ |++|. +++||+|.|++++... +......+....++++.++.++||||||+|||+|+
T Consensus 42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~ 120 (737)
T TIGR02441 42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL 120 (737)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 578999999999999999975 45776 7899999999998642 23334455567788899999999999999999999
Q ss_pred chhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 79 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
|||++|+++||+||++++ ++|++||+++|++|+ +|++++++|++|..++++++++|++++++|
T Consensus 121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg---------------~Ggt~rLprliG~~~A~~l~ltG~~i~a~e 185 (737)
T TIGR02441 121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPG---------------AGGTQRLPKLTGVPAALDMMLTGKKIRADR 185 (737)
T ss_pred cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCC---------------ccHhhhHHHhhCHHHHHHHHHcCCcCCHHH
Confidence 999999999999999998 589999999999999 999999999999999999999999999999
Q ss_pred HHhcCccceecCC-------------ChHHHHHHHHHHHHhh
Q 029329 157 AMSLGLVNYYVPA-------------GQAQLKALEIAQEINQ 185 (195)
Q Consensus 157 A~~~Glvd~v~~~-------------~~~~~~a~~~a~~~~~ 185 (195)
|+++||||+|+|+ +++.+.|.+++++++.
T Consensus 186 A~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 186 AKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred HHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999987 4477888888877654
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8.9e-34 Score=224.59 Aligned_cols=179 Identities=20% Similarity=0.365 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-------hHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEALPIPTIAVI 73 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~kp~Iaav 73 (195)
|+.++.++|+.+.+|+++..++++|+ |++||+|.|+..+...... ...++...+......+..+|||+||.|
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 46789999999999999988888887 8999999999987643221 122333444557888999999999999
Q ss_pred CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS 153 (195)
Q Consensus 74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 153 (195)
||+++|.|..+...||++||+|+++|..|+.++|..|. ++.++.+++++|...+.|+++.|++++
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PE---------------G~Ss~t~p~imG~~~A~E~ll~~~klt 179 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPE---------------GCSSVTLPKIMGSASANEMLLFGEKLT 179 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCC---------------cceeeeehHhhchhhHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
|+||.+.|||++++|.+++.++++..++++++.+|.+++..|
T Consensus 180 A~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K 221 (266)
T KOG0016|consen 180 AQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMK 221 (266)
T ss_pred HHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999998776
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-34 Score=221.59 Aligned_cols=177 Identities=28% Similarity=0.515 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeC--CCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G 75 (195)
..|+.+++..+..|++|.+|++||+ |+.+||+|.|-+-.... +.+.... -.+.++-+.|+.+||||||.|+|
T Consensus 48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G 125 (282)
T COG0447 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG 125 (282)
T ss_pred HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence 4689999999999999999999975 78999999998765431 1111111 12334555778899999999999
Q ss_pred cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 155 (195)
Q Consensus 76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~ 155 (195)
+++|||-.|-+.||..||+++++|+....++|-+-+ +.++.+|.|.+|..+|+|+.+.++.++|+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~---------------G~Gs~ylar~VGqKkArEIwfLcR~Y~A~ 190 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDG---------------GYGSSYLARIVGQKKAREIWFLCRQYDAE 190 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccC---------------cccHHHHHHHhhhhhhHHhhhhhhhccHH
Confidence 999999999999999999999999999999998887 78899999999999999999999999999
Q ss_pred HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
||+++|+||.|+|.++++++..+|++++.++||.++|++|
T Consensus 191 eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK 230 (282)
T COG0447 191 EALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLK 230 (282)
T ss_pred HHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999999999999999999987
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=197.87 Aligned_cols=178 Identities=26% Similarity=0.408 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
|+.+|.+.|.....+.++|+|||+.. |+.||+|.||+++...+..+ ..+.++...+.+..|++.|.|+|+-|||++.+
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA 138 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA 138 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence 67788888888888899999999997 79999999999997755333 44667788899999999999999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
+|+.|..+||++|++++++|..|-..+|++-. .- -..+.|.++...+.+|++||+|++++||+.
T Consensus 139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCS---------------TP-GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~ 202 (287)
T KOG1682|consen 139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCS---------------TP-GVALARAVPRKVAAYMLMTGLPITGEEALI 202 (287)
T ss_pred ccceEEEeeeEEEEecCccccCCCCceeeEec---------------Cc-chhHhhhcchhHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999998653 11 134788999999999999999999999999
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 195 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k 195 (195)
.|||++++|.+++..++++++.+|.+.+...+...|
T Consensus 203 sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk 238 (287)
T KOG1682|consen 203 SGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGK 238 (287)
T ss_pred hhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999988776544
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.95 E-value=3e-27 Score=194.77 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc----CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
|...+-..|..++.++.+++||+.|+++++||+|.|+..... ........++..-+.+...+.++.||.||.++|.
T Consensus 66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 667788899999999999999999999999999999875532 2344667888888999999999999999999999
Q ss_pred ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e 156 (195)
++|||+.|+...-||||++++.|.+||..+|++|+ .|++++++|+.| ....++.+||+++++.|
T Consensus 146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPD---------------VG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD 209 (401)
T KOG1684|consen 146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPD---------------VGASYFLSRLPG-YLGLYLGLTGQRLSGAD 209 (401)
T ss_pred eecCCcceeecceeEEeeccceecccccccccccC---------------ccceeehhhCcc-HHHHhhhhccceecchH
Confidence 99999999999999999999999999999999999 999999999988 68999999999999999
Q ss_pred HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHH
Q 029329 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191 (195)
Q Consensus 157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~ 191 (195)
|+..||.++.||++.+..--.++...+..-|...+
T Consensus 210 ~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I 244 (401)
T KOG1684|consen 210 ALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVI 244 (401)
T ss_pred HHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHH
Confidence 99999999999998876544455545555444443
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.90 E-value=2.7e-23 Score=160.79 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
+.+|.++++++++|+++|+|||++ +|.|.|+... ..+.+.+..+.+++|||||+++|.|.|+|
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~g 86 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASGG 86 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHHH
Confidence 578999999999999999999987 4778777542 34556777888899999999999999999
Q ss_pred HHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh--hcHHHHHHHHHcCCCCCHHHHHh
Q 029329 82 LEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL--VGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~--ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
+.|+++||++++++++.|+.+.+..+..+. ....+..-+ -....+++. +.....++++..|.+++++||++
T Consensus 87 ~~la~a~D~i~a~~~a~~~~~G~~~~~~~~-----~~~l~~~~~--~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~ 159 (177)
T cd07014 87 YWISTPANYIVANPSTLVGSIGIFGVQLAD-----QLSIENGYK--RFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKA 159 (177)
T ss_pred HHHHHhCCEEEECCCCeEEEechHhhHHHH-----HHHHHHHHH--HHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHH
Confidence 999999999999999999998776653221 000000000 001123333 34778899999999999999999
Q ss_pred cCccceecCCChHHHH
Q 029329 160 LGLVNYYVPAGQAQLK 175 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~ 175 (195)
.||||++.+.+++.++
T Consensus 160 ~GLVD~v~~~~e~~~~ 175 (177)
T cd07014 160 NGLVDSLGSFDDAVAK 175 (177)
T ss_pred cCCcccCCCHHHHHHH
Confidence 9999999988776543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.87 E-value=1.5e-21 Score=152.34 Aligned_cols=150 Identities=18% Similarity=0.245 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Ccccc
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~g 79 (195)
..+.++|+.+++|+ ++.|+|.=+ |.|.++ .....++.++..+|||||++++ |+|.|
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v---------------~~~~~i~~~l~~~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLL---------------DSTREIVQAILASPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCH---------------HHHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence 56788999998765 788888743 224443 2233566677889999999999 99999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccCCCCCcc-chhhhhhcccCCccchhhhhhcH--HHHHHHHHcCCCCCHHH
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS-LSHVILASDRAGGTQRLPRLVGK--SVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~-~~~~~~~~~~~g~~~~l~~~ig~--~~a~~l~l~g~~~~a~e 156 (195)
+|+.++++||+++++++++|+.+++..+..+...+.. ........ ......+.+..|. .++++++++|+.|+++|
T Consensus 75 gG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~e 152 (187)
T cd07020 75 AGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDA--VAYIRSLAELRGRNAEWAEKAVRESLSLTAEE 152 (187)
T ss_pred HHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHcCCeecHHH
Confidence 9999999999999999999999998855433200000 00000000 1124467788886 68999999999999999
Q ss_pred HHhcCccceecCCC-hHHHH
Q 029329 157 AMSLGLVNYYVPAG-QAQLK 175 (195)
Q Consensus 157 A~~~Glvd~v~~~~-~~~~~ 175 (195)
|+++||||++++++ ++...
T Consensus 153 A~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 153 ALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHcCCcccccCCHHHHHHH
Confidence 99999999999886 55544
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.79 E-value=1.3e-18 Score=138.14 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
+.+|.++|+.+.+||++++|||+ .||.|.|+..+ ..+++.+..+..++||+|++++|.|.|+|
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~------------~~~~~~l~~~~~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS------------EVIRAELAAARAAGKPVVVSAGGAAASGG 85 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence 67899999999999999999997 58999998663 24456677888899999999999999999
Q ss_pred HHHhhhCCEEEEeCCceee
Q 029329 82 LEMALACDLRICGEAALLG 100 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~~ 100 (195)
+.|+++||++++++++.++
T Consensus 86 y~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 86 YWISTPANYIVANPSTLTG 104 (211)
T ss_pred HHHHHhCCEEEEcCCCEEE
Confidence 9999999999999998875
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.74 E-value=1.4e-17 Score=126.78 Aligned_cols=145 Identities=15% Similarity=0.123 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
++++|.+.|+.++.|+.+++|+|+.+ |.|.|+.. ...+...+..++||||+.++|.|.++
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence 46889999999999999999999864 55665532 33455667778899999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeecccccccccCCCC-----CccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329 81 GLEMALACDLRICGEAALLGLPETGLAIIPGCS-----DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 155 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~-----~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~ 155 (195)
|+.|+++||.|++.+++.|++..+..+.... . .....+.+...++.-....-.|.+......+.+..+..++++
T Consensus 72 g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~ 150 (161)
T cd00394 72 GYYIATAANKIVMAPGTRVGSHGPIGGYGGN-GNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQ 150 (161)
T ss_pred HHHHHhCCCEEEECCCCEEEEeeeEEecCCC-CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHH
Confidence 9999999999999999999998876554321 1 000011111111100011112233445567788889999999
Q ss_pred HHHhcCcccee
Q 029329 156 DAMSLGLVNYY 166 (195)
Q Consensus 156 eA~~~Glvd~v 166 (195)
||+++||||+|
T Consensus 151 eA~~~GLvD~i 161 (161)
T cd00394 151 EALEYGLVDAL 161 (161)
T ss_pred HHHHcCCcCcC
Confidence 99999999985
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.73 E-value=2.1e-17 Score=148.47 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
.+.+.+.|+.+..|++||+|||+-+.| |.+... .+.+++.+.++...+||||+.++|.|.+||
T Consensus 331 ~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a------------se~i~~~i~~~~~~gKPVva~~~g~aaSgg 393 (584)
T TIGR00705 331 GDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA------------SEIIRRELARAQARGKPVIVSMGAMAASGG 393 (584)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH------------HHHHHHHHHHHHhCCCcEEEEECCccccHH
Confidence 357889999999999999999997633 222210 234566667777889999999999999999
Q ss_pred HHHhhhCCEEEEeCCcee------eccc------ccccccCCCCCcc------------chhhhhhcccCCc-cchhhhh
Q 029329 82 LEMALACDLRICGEAALL------GLPE------TGLAIIPGCSDRS------------LSHVILASDRAGG-TQRLPRL 136 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~------~~~e------~~~G~~p~~~~~~------------~~~~~~~~~~~g~-~~~l~~~ 136 (195)
+.++++||.+++++++.+ +.+. .++|+.+...... ....+....-... ...+...
T Consensus 394 Y~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~ 473 (584)
T TIGR00705 394 YWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSV 473 (584)
T ss_pred HHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999866 4442 4678776411000 0000000000000 0001113
Q ss_pred hcHHH-----HHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHH
Q 029329 137 VGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQS 189 (195)
Q Consensus 137 ig~~~-----a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~ 189 (195)
++..+ ..+.+.+|+.|+++||+++||||++. .+ ++|.+.|++++.. ++.
T Consensus 474 Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~ 528 (584)
T TIGR00705 474 VSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQW 528 (584)
T ss_pred HHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCc
Confidence 33333 56778899999999999999999994 33 7888888888887 443
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.72 E-value=3.4e-17 Score=130.36 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
++.+|.++|+++++||++++|||+.+ |.|.++.. ...+.+.+.++.. +|||||+++|.|.|+
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~------------~~~l~~~l~~~~~-~KpViA~v~g~a~s~ 87 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG------------VFELADAIRAARA-GKPIVAFVNGLAASA 87 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH------------HHHHHHHHHHHhc-CCCEEEEECCchhhH
Confidence 46899999999999999999999864 44554432 1334445555555 799999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeeccc------------ccccccCC-------------CCCccchhhhhhcccCCc------
Q 029329 81 GLEMALACDLRICGEAALLGLPE------------TGLAIIPG-------------CSDRSLSHVILASDRAGG------ 129 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~-------------~~~~~~~~~~~~~~~~g~------ 129 (195)
|+.++++||++++++++.|+..- -++|+-+. +.+.+....+...+....
T Consensus 88 gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~ 167 (214)
T cd07022 88 AYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFV 167 (214)
T ss_pred HHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864431 12344221 111111111111110000
Q ss_pred -cchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHH
Q 029329 130 -TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173 (195)
Q Consensus 130 -~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~ 173 (195)
...-.|.+.....++++ |+.+++++|++.||||++...+++.
T Consensus 168 ~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 168 AAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 00111223334444444 9999999999999999998766654
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.72 E-value=5.8e-17 Score=128.40 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
++.+|.++|+.+++||++++|+++++ |.|.|+... ..+.+.+..+..++||+|++++|.|.|+
T Consensus 18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~~~~~kpvia~v~g~~~s~ 80 (208)
T cd07023 18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRLRKAKKPVVASMGDVAASG 80 (208)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEECCcchhH
Confidence 57899999999999999999999884 668877541 2345667778888999999999999999
Q ss_pred hHHHhhhCCEEEEeCCceeeccc------------ccccccCC------CCCccchhh-------hhhcc-------cCC
Q 029329 81 GLEMALACDLRICGEAALLGLPE------------TGLAIIPG------CSDRSLSHV-------ILASD-------RAG 128 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~------~~~~~~~~~-------~~~~~-------~~g 128 (195)
|+.++++||++++++++.|+..- -++|+-+. +-+...++. +...+ ..-
T Consensus 81 g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999775421 12344332 111111110 00000 000
Q ss_pred ccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHH
Q 029329 129 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173 (195)
Q Consensus 129 ~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~ 173 (195)
....-.|.+...... -+..|..+++++|++.||||++...++..
T Consensus 161 ~~Va~~R~~~~~~~~-~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 161 DVVAEGRGMSGERLD-KLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHhcCCCCHHHHH-HhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000001111122222 25678999999999999999998765544
No 99
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.68 E-value=3.6e-16 Score=123.82 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCC--CcEEEEECCcccc
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALG 79 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~Iaav~G~a~g 79 (195)
..+|.++|+.+.+|+++++|+|+.+ |.|.++.. ..++...+.+++ ||+|+.++|.|.|
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHHHHhcCCCCEEEEECCccch
Confidence 4688999999999999999999985 55665532 234445555555 9999999999999
Q ss_pred hhHHHhhhCCEEEEeCCceeeccc------------ccccccCC-------------CCCccchhhhhhcc-------cC
Q 029329 80 GGLEMALACDLRICGEAALLGLPE------------TGLAIIPG-------------CSDRSLSHVILASD-------RA 127 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~-------------~~~~~~~~~~~~~~-------~~ 127 (195)
+|+.++++||.+++++++.++.-- -++|+-+. +.+.+....+.... ..
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f 154 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQF 154 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765421 12344221 11111111111100 00
Q ss_pred CccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329 128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178 (195)
Q Consensus 128 g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~ 178 (195)
-....-.|.+.....++ +..|+.+++++|++.||||++...+++.+.+.+
T Consensus 155 ~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 155 VQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred HHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 00001112333333333 467899999999999999999887766655444
No 100
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.67 E-value=1.3e-15 Score=115.89 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
.+++.+.|+.+++++.+. +.|.+.|| ++ .....+...+..++||+++.++|.|.|+|
T Consensus 17 ~~~~~~~l~~~~~~~~i~-l~inspGG-------~~---------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g 73 (160)
T cd07016 17 AKEFKDALDALGDDSDIT-VRINSPGG-------DV---------------FAGLAIYNALKRHKGKVTVKIDGLAASAA 73 (160)
T ss_pred HHHHHHHHHhccCCCCEE-EEEECCCC-------CH---------------HHHHHHHHHHHhcCCCEEEEEcchHHhHH
Confidence 467888999998874433 44455432 22 22345677788889999999999999999
Q ss_pred HHHhhhCCEEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHH
Q 029329 82 LEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA 157 (195)
+.++++||+|++++++.|.++....+..+...+... ...+... .-....+.+..| ....++++..+..++++||
T Consensus 74 ~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA 151 (160)
T cd07016 74 SVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKID--ESIANAYAEKTGLSEEEISALMDAETWLTAQEA 151 (160)
T ss_pred HHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHH
Confidence 999999999999999999998876555432000000 0000000 001233566677 6777888887888999999
Q ss_pred HhcCcccee
Q 029329 158 MSLGLVNYY 166 (195)
Q Consensus 158 ~~~Glvd~v 166 (195)
+++||||+|
T Consensus 152 ~~~GliD~v 160 (160)
T cd07016 152 VELGFADEI 160 (160)
T ss_pred HHcCCCCcC
Confidence 999999986
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.62 E-value=1.4e-15 Score=121.76 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
++.+|.++|+++.+||+|++|||+.++ ..| ++.++ +.+++.+.++...+|||||.++| +.++
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~---------------~el~~~i~~~~~~~kpVia~~~~-~~sg 91 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKL---------------EELRQALERFRASGKPVIAYADG-YSQG 91 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHH---------------HHHHHHHHHHHHhCCeEEEEeCC-CCch
Confidence 367899999999999999999999974 344 44443 34566777777789999999998 8899
Q ss_pred hHHHhhhCCEEEEeCCceeecccc------------cccccCC------CCC---------ccchhhhhhcccCCcc---
Q 029329 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPG------CSD---------RSLSHVILASDRAGGT--- 130 (195)
Q Consensus 81 G~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~------~~~---------~~~~~~~~~~~~~g~~--- 130 (195)
|+.++++||.+++.+++.|+..-+ ++|+-+. +-+ .+....+...+-....
T Consensus 92 gy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~ 171 (222)
T cd07018 92 QYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ 171 (222)
T ss_pred hhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876422 2343221 001 1111111111000000
Q ss_pred ----chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHH
Q 029329 131 ----QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175 (195)
Q Consensus 131 ----~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 175 (195)
..-.|.+.....++ +..|+.+++++|++.||||++...+++.+.
T Consensus 172 f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 172 YLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 00012222333333 355999999999999999999977766554
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.49 E-value=5.1e-13 Score=103.35 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
..+.++|+++++++ ++.|++.=+.+ |.++ .....+...+.++++|+|+.|+|.|.|+|+
T Consensus 16 ~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v---------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~ 74 (178)
T cd07021 16 AFVERALKEAKEEG-ADAVVLDIDTP-----GGRV---------------DSALEIVDLILNSPIPTIAYVNDRAASAGA 74 (178)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH---------------HHHHHHHHHHHhCCCCEEEEECCchHHHHH
Confidence 45788899999886 77777766533 3433 446677888889999999999999999999
Q ss_pred HHhhhCCEEEEeCCceeecccccccccCC-CCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcC----------
Q 029329 83 EMALACDLRICGEAALLGLPETGLAIIPG-CSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTG---------- 149 (195)
Q Consensus 83 ~la~~~D~~va~~~a~~~~~e~~~G~~p~-~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g---------- 149 (195)
.++++||++++++++.|+.+.+-.+-... ..++..+.. ......+.+.-| ...+..|+-..
T Consensus 75 ~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~------~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~ 148 (178)
T cd07021 75 LIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYW------RAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKG 148 (178)
T ss_pred HHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHH------HHHHHHHHHHhCCCHHHHHHHhhhhcccccccccc
Confidence 99999999999999999998654221110 001111100 000011222222 44555555544
Q ss_pred ---CCCCHHHHHhcCccceecCC
Q 029329 150 ---RKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 150 ---~~~~a~eA~~~Glvd~v~~~ 169 (195)
..++++||+++|++|.+.++
T Consensus 149 ~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 149 GELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred cceeeeCHHHHHHhCCeEEEECC
Confidence 27999999999999999876
No 103
>PRK10949 protease 4; Provisional
Probab=99.40 E-value=2.4e-12 Score=116.31 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.+.|+++.+|++||+|||+-+.|+ .... -.+.+++.+.+++...||||+.+.+.|..||+
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~~------------ase~i~~~i~~~r~~gKPVvas~~~~aASggY 412 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSVT------------ASEVIRAELAAARAAGKPVVVSMGGMAASGGY 412 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcHH------------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHH
Confidence 468899999999999999999987443 2111 13556677777777899999999999999999
Q ss_pred HHhhhCCEEEEeCCceeec-------c-----cccccccCC------C------CCccchhhhhhcc-------cCCccc
Q 029329 83 EMALACDLRICGEAALLGL-------P-----ETGLAIIPG------C------SDRSLSHVILASD-------RAGGTQ 131 (195)
Q Consensus 83 ~la~~~D~~va~~~a~~~~-------~-----e~~~G~~p~------~------~~~~~~~~~~~~~-------~~g~~~ 131 (195)
.++++||.+++.|.+..+. + -.++|+... + .+.+....+.... +.-...
T Consensus 413 ~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~V 492 (618)
T PRK10949 413 WISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLV 492 (618)
T ss_pred HHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864332 1 112444322 0 1111111111110 000001
Q ss_pred hhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178 (195)
Q Consensus 132 ~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~ 178 (195)
.-.|.+......+ +..|+.|++++|++.||||++...++..+.+.+
T Consensus 493 a~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 493 ADSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred HhhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 1122233333333 578999999999999999999775544444443
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.30 E-value=3.7e-11 Score=92.31 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Ccccc
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~g 79 (195)
..|.+.++.+++| +.+.|+|.=+ |.|.++ .....++..+...++||++.++ |.|.+
T Consensus 16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v---------------~~~~~I~~~i~~~~~pvv~~v~p~g~~AaS 74 (172)
T cd07015 16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRA---------------DAAGNIVQRIQQSKIPVIIYVYPPGASAAS 74 (172)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCcCEEEEEecCCCeehh
Confidence 4577888888775 5788888765 334433 2344566777788999999999 99999
Q ss_pred hhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHH
Q 029329 80 GGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~e 156 (195)
+|+.++++||.+++.|++.++...+..+..+ ..++.+...+.... ..-..-+.+.-| ...+.+++-....++++|
T Consensus 75 ag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~--~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~E 152 (172)
T cd07015 75 AGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYF--IAYIKSLAQESGRNATIAEEFITKDLSLTPEE 152 (172)
T ss_pred HHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHH--HHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHH
Confidence 9999999999999999999998877533222 00001010000000 000111333344 566778888889999999
Q ss_pred HHhcCccceecCC
Q 029329 157 AMSLGLVNYYVPA 169 (195)
Q Consensus 157 A~~~Glvd~v~~~ 169 (195)
|+++|++|.+.++
T Consensus 153 A~~~G~iD~ia~~ 165 (172)
T cd07015 153 ALKYGVIEVVARD 165 (172)
T ss_pred HHHcCCceeeeCC
Confidence 9999999999976
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.21 E-value=9.5e-11 Score=89.45 Aligned_cols=143 Identities=11% Similarity=0.141 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
.+++.+.|..++.++..+.|+|.=+ |.|.++ .....++..+...++|+++.+.|.|.++|
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGLAASMG 73 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEeehhhHH
Confidence 4678889999998877777777655 233433 23445666777789999999999999999
Q ss_pred HHHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHH
Q 029329 82 LEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGK 155 (195)
Q Consensus 82 ~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~ 155 (195)
..+++++| .|++.+++.+.+....-+......+... ...+...++ ....+.+..| ....++++-.+..++++
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~--~~~~~a~~tg~~~~~i~~~~~~~~~~sa~ 151 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGN--LVSAYAHKTGQSEEELHADLERDTWLSAR 151 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCHHHHHHHHcCCccccHH
Confidence 99999999 6888889888876543222111000000 000000000 0112222223 55566667777777999
Q ss_pred HHHhcCcccee
Q 029329 156 DAMSLGLVNYY 166 (195)
Q Consensus 156 eA~~~Glvd~v 166 (195)
||+++||||++
T Consensus 152 eA~~~GliD~i 162 (162)
T cd07013 152 EAVEYGFADTI 162 (162)
T ss_pred HHHHcCCCCcC
Confidence 99999999985
No 106
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.18 E-value=1.5e-10 Score=97.30 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.+.|+.+..||++++|+|+-+.|+.-..+ .+.+.+.+.++..-. |+++.|++.|.+||+
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY 144 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPGGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGYAASGGY 144 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcCCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCeecchhh
Confidence 56788999999999999999987644322211 245666666666555 999999999999999
Q ss_pred HHhhhCCEEEEeCCceeecccccc------------ccc---------CC----CCCccchhhhhhcccCCcc-chhhhh
Q 029329 83 EMALACDLRICGEAALLGLPETGL------------AII---------PG----CSDRSLSHVILASDRAGGT-QRLPRL 136 (195)
Q Consensus 83 ~la~~~D~~va~~~a~~~~~e~~~------------G~~---------p~----~~~~~~~~~~~~~~~~g~~-~~l~~~ 136 (195)
.+|++||.++|+|++..+-=-+.. |+- -+ ..+.|.......+....-. ..+...
T Consensus 145 ~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~ 224 (317)
T COG0616 145 YIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDK 224 (317)
T ss_pred hhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998554322221 210 00 1111111100000000000 000000
Q ss_pred h-----cHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHH
Q 029329 137 V-----GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179 (195)
Q Consensus 137 i-----g~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~ 179 (195)
+ .......-+.+|+.|++++|.+.||||++...++....+.+.
T Consensus 225 V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 225 VAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred HHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 0 011113347789999999999999999998765555444443
No 107
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.02 E-value=1.6e-09 Score=83.41 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
..++...|..++.++..+.|++.=+ |.|.|+ .....++..+...+.|+++.+.|.|.++|
T Consensus 23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v---------------~~~~~i~~~l~~~~~~v~t~~~g~aaS~~ 82 (171)
T cd07017 23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSV---------------TAGLAIYDTMQYIKPPVSTICLGLAASMG 82 (171)
T ss_pred HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEEeEehhHH
Confidence 3567888888887766565555444 223333 22335556666779999999999999999
Q ss_pred HHHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHH
Q 029329 82 LEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 82 ~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA 157 (195)
..+++++| .|++.+++.|.+.+...+....-.+......++...+......+....| .....+++..+..++++||
T Consensus 83 ~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA 162 (171)
T cd07017 83 ALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162 (171)
T ss_pred HHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence 99999999 8999999999998876543222000000000000000111112222233 4456677778899999999
Q ss_pred HhcCcccee
Q 029329 158 MSLGLVNYY 166 (195)
Q Consensus 158 ~~~Glvd~v 166 (195)
+++||||+|
T Consensus 163 ~e~GiiD~V 171 (171)
T cd07017 163 KEYGLIDKI 171 (171)
T ss_pred HHcCCCccC
Confidence 999999986
No 108
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.98 E-value=4.3e-09 Score=88.38 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=72.4
Q ss_pred HHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccc------------cccccCC------C-------C
Q 029329 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPG------C-------S 113 (195)
Q Consensus 59 ~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~------~-------~ 113 (195)
+.++...+||+++.+++.|..||+.+|++||.+++.|.+.++.--+ ++|+-+. + .
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 4566778999999999999999999999999999999986544221 1233111 1 1
Q ss_pred CccchhhhhhcccCCcc-chhhhhhcH---HHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329 114 DRSLSHVILASDRAGGT-QRLPRLVGK---SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178 (195)
Q Consensus 114 ~~~~~~~~~~~~~~g~~-~~l~~~ig~---~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~ 178 (195)
+.+...++...+-...+ ..+...+-. ....+-+.+|+.|++++|++.||||++...+++...+.+
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 11111111111000000 000000100 011234678999999999999999999988777654443
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.92 E-value=5.6e-09 Score=82.72 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
.+++...|..++.++..+.|.+.=+ |.|.++ .....++..+...+.|+++.+.|.|.+.|
T Consensus 49 ~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaSaa 108 (207)
T PRK12553 49 ANDVMAQLLVLESIDPDRDITLYIN-----SPGGSV---------------TAGDAIYDTIQFIRPDVQTVCTGQAASAG 108 (207)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcH---------------HHHHHHHHHHHhcCCCcEEEEEeehhhHH
Confidence 3567888888886553444444333 223333 23445667777788899999999999999
Q ss_pred HHHhhhCC--EEEEeCCceeecccccc-cccCCCCCccchh---hhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCC
Q 029329 82 LEMALACD--LRICGEAALLGLPETGL-AIIPGCSDRSLSH---VILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVS 153 (195)
Q Consensus 82 ~~la~~~D--~~va~~~a~~~~~e~~~-G~~p~~~~~~~~~---~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~ 153 (195)
..++++|| .|++.+++.|.+.+... |..-+ ..+... .++..-|......+.+..| .....+++-.+..++
T Consensus 109 ~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G--~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt 186 (207)
T PRK12553 109 AVLLAAGTPGKRFALPNARILIHQPSLGGGIRG--QASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT 186 (207)
T ss_pred HHHHHcCCcCcEEECCCchhhhcCccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc
Confidence 99999999 59999999999987653 21111 000000 0000000001122233333 456667777889999
Q ss_pred HHHHHhcCccceecCC
Q 029329 154 GKDAMSLGLVNYYVPA 169 (195)
Q Consensus 154 a~eA~~~Glvd~v~~~ 169 (195)
++||+++||||+|+++
T Consensus 187 a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 187 AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHcCCccEEcCc
Confidence 9999999999999875
No 110
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.91 E-value=1.6e-08 Score=79.65 Aligned_cols=147 Identities=9% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+...|..++.++..+-|.+.=+ |.|.|+ .....++..+...+.|+++.+.|.|.+.|.
T Consensus 46 ~~i~~~L~~l~~~~~~~~I~l~In-----SpGG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~ 105 (200)
T PRK00277 46 NLIVAQLLFLEAEDPDKDIYLYIN-----SPGGSV---------------TAGLAIYDTMQFIKPDVSTICIGQAASMGA 105 (200)
T ss_pred HHHHHHHHHhhccCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCEEEEEEeEeccHHH
Confidence 456777777775543333333322 122333 223355666777788999999999999999
Q ss_pred HHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHHH
Q 029329 83 EMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDAM 158 (195)
Q Consensus 83 ~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA~ 158 (195)
.++++++ .|++.+++.+.+....-+....-.+......++-.-|......+....| .....+++-.+..++++||+
T Consensus 106 ~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~ 185 (200)
T PRK00277 106 FLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAK 185 (200)
T ss_pred HHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHH
Confidence 9999764 6899999988887654332111000000000000000000122333333 45566667778889999999
Q ss_pred hcCccceecCC
Q 029329 159 SLGLVNYYVPA 169 (195)
Q Consensus 159 ~~Glvd~v~~~ 169 (195)
++||||+|+..
T Consensus 186 e~GliD~Ii~~ 196 (200)
T PRK00277 186 EYGLIDEVLTK 196 (200)
T ss_pred HcCCccEEeec
Confidence 99999999875
No 111
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.87 E-value=1.5e-08 Score=91.58 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
+.++.++|+.+.+||.|++|+|.-++ +.|.++.. .+++++.+..+....|||+|..++.+ .+|
T Consensus 78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~ 140 (584)
T TIGR00705 78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQ 140 (584)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-chh
Confidence 56899999999999999999999752 12333321 35677777788888999999888765 788
Q ss_pred HHHhhhCCEEEEeCCceeec
Q 029329 82 LEMALACDLRICGEAALLGL 101 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~~~ 101 (195)
+.++.+||.+++.|.+.+++
T Consensus 141 YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 141 YYLASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhhhhCCEEEECCCceEEe
Confidence 99999999999999987644
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.83 E-value=4.2e-09 Score=81.69 Aligned_cols=114 Identities=12% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCc--cchhhhhhcccCCc
Q 029329 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDR--SLSHVILASDRAGG 129 (195)
Q Consensus 54 ~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~--~~~~~~~~~~~~g~ 129 (195)
....++..+..++.|+++.+.|.|.+.|..++++||. |++.+++.|.+.++..+......+. .........+| .
T Consensus 62 ~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~--~ 139 (182)
T PF00574_consen 62 AGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNER--I 139 (182)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHH--H
Confidence 3456777888899999999999999999999999999 8999999999998876543310000 00000011110 0
Q ss_pred cchhhhhh--cHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 130 TQRLPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 130 ~~~l~~~i--g~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
...+.... ......+++-...-++++||+++||||+|...
T Consensus 140 ~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 140 ANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 12222232 34555666666677899999999999999754
No 113
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.82 E-value=3.7e-08 Score=77.41 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCcc--chhhhhhcccCCcc
Q 029329 55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRS--LSHVILASDRAGGT 130 (195)
Q Consensus 55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~--~~~~~~~~~~~g~~ 130 (195)
...++..+...+.||++.+.|.|.+.|..++++||. |++.|++.|.+....-+......+-. ....+...+ ...
T Consensus 70 g~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~--~i~ 147 (197)
T PRK14512 70 GFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKS--ELN 147 (197)
T ss_pred HHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHH--HHH
Confidence 445667777789999999999999999999999985 99999999987765433311100000 000001111 011
Q ss_pred chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
..+....| .....+++-....++++||+++||+|+|++.
T Consensus 148 ~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 148 DIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred HHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 12233333 4556666777788999999999999999976
No 114
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.78 E-value=5.7e-08 Score=76.47 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeeccccccc-ccCCCCCccchhhhhhcccCCccch
Q 029329 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLA-IIPGCSDRSLSHVILASDRAGGTQR 132 (195)
Q Consensus 56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G-~~p~~~~~~~~~~~~~~~~~g~~~~ 132 (195)
..++..+...+.||...+.|.|.+.|..|++++| .|++.++++|.+.....| ....-.+......++..-|......
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV 157 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788999999999999999999999999 699999999999887655 2211000000000111101111122
Q ss_pred hhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329 133 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170 (195)
Q Consensus 133 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~ 170 (195)
+....| .....+++-....++|+||+++||||+|..+.
T Consensus 158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 333334 34556667777889999999999999998753
No 115
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.76 E-value=9e-10 Score=92.36 Aligned_cols=159 Identities=18% Similarity=0.099 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
..+|..-|+.++.+..+++.++++...+.|++|.|..+............+-.+++++....+++.|+.+++||++..++
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 45777888888899999999999988899999999998876666666667788999999999999999999999999998
Q ss_pred --HHHhhhCCEEEEeC--CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329 82 --LEMALACDLRICGE--AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 157 (195)
Q Consensus 82 --~~la~~~D~~va~~--~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 157 (195)
+.++.+|+|++... .-..+..+...++..+ + + -.-.+...+|...+...+-.+.-++..|+
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~------p--------~-~iD~~~t~fGf~~g~~~L~d~~gfdv~ea 228 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGAD------P--------W-LIDSLITKFGFRVGERALADGVGFDVAEA 228 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHHHHHHHcCCC------H--------H-HHHHHHHhcCccccHHHHhhccCccHHHH
Confidence 99999999999994 4445778877774332 0 1 12223445566666666778899999999
Q ss_pred HhcCccceecCC--ChHHHH
Q 029329 158 MSLGLVNYYVPA--GQAQLK 175 (195)
Q Consensus 158 ~~~Glvd~v~~~--~~~~~~ 175 (195)
.+.|+++++.|. +++.+.
T Consensus 229 l~~gl~~~~~~r~~eel~~~ 248 (380)
T KOG1683|consen 229 LAVGLGDEIGPRIEEELLEK 248 (380)
T ss_pred HhhccchhccchhHHHHHHH
Confidence 999999999984 444433
No 116
>PRK10949 protease 4; Provisional
Probab=98.76 E-value=4.8e-08 Score=88.65 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
+.++.++|+.+.+||.|++|+|.-++++ |..+. -.+++++.+.++....||+||..+. +..++
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~-~~s~~ 159 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQP------------SMQYIGKALREFRDSGKPVYAVGDS-YSQGQ 159 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHH------------HHHHHHHHHHHHHHhCCeEEEEecC-ccchh
Confidence 4679999999999999999999986322 22221 1356777888888889999986444 45678
Q ss_pred HHHhhhCCEEEEeCCceeec
Q 029329 82 LEMALACDLRICGEAALLGL 101 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~~~ 101 (195)
+.||.+||.+++.|.+.+++
T Consensus 160 YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 160 YYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhCCEEEECCCceEEE
Confidence 99999999999999976644
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.72 E-value=1.9e-07 Score=73.07 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+++...|..++.++..+-|.+.=+ |.|.|+ .....++..+...+.|+...+.|.|.+.|.
T Consensus 41 ~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~g~~I~d~l~~~~~~v~t~~~G~AaSaas 100 (191)
T TIGR00493 41 NLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSI---------------TAGLAIYDTMQFIKPDVSTICIGQAASMGA 100 (191)
T ss_pred HHHHHHHHHhhccCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEEEeeccHHH
Confidence 456677777776554444444333 223333 223345556666677888888899999999
Q ss_pred HHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHH
Q 029329 83 EMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKD 156 (195)
Q Consensus 83 ~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~e 156 (195)
.+++++| .|++.+++.|.+.+..-|....-.+... ..++...+ .....+.+..| .....+++-.+..++++|
T Consensus 101 lI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~--~~~~~ya~~tg~~~~~i~~~~~~~~~lta~E 178 (191)
T TIGR00493 101 FLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKG--LLNDILANHTGQSLEQIEKDTERDFFMSAEE 178 (191)
T ss_pred HHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHH--HHHHHHHHHHCcCHHHHHHHhhCCccCcHHH
Confidence 9988766 6999999999998765443221000000 00001100 01122333333 455667777888999999
Q ss_pred HHhcCccceecC
Q 029329 157 AMSLGLVNYYVP 168 (195)
Q Consensus 157 A~~~Glvd~v~~ 168 (195)
|+++||+|+|+.
T Consensus 179 A~~~GliD~ii~ 190 (191)
T TIGR00493 179 AKEYGLIDSVLT 190 (191)
T ss_pred HHHcCCccEEec
Confidence 999999999864
No 118
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.70 E-value=2.1e-07 Score=74.21 Aligned_cols=113 Identities=8% Similarity=-0.021 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP 134 (195)
Q Consensus 57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~ 134 (195)
.++..+...+-||...+.|.|.+.|..|++++|. |++.+++.|.+....-|....-++-.....++..-|......+.
T Consensus 103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya 182 (221)
T PRK14514 103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA 182 (221)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788999999999999999999999996 99999999998887544322100000000011111111122233
Q ss_pred hhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 135 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 135 ~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
+..| .....+.+-....++|+||+++||||+|+..
T Consensus 183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 4444 3445566777888999999999999999854
No 119
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.69 E-value=2.3e-07 Score=72.85 Aligned_cols=115 Identities=13% Similarity=0.017 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchh
Q 029329 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRL 133 (195)
Q Consensus 56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l 133 (195)
..++..+...+.||...+.|.|.+.|..|++++|. |++.+++.+.+....-|..-.-.+-.....++..-|......+
T Consensus 73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~y 152 (196)
T PRK12551 73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTEL 152 (196)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 35666777788899999999999999999999985 8999999999888753322110000000000100011111223
Q ss_pred hhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329 134 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170 (195)
Q Consensus 134 ~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~ 170 (195)
.+..| .....+++-.-..++++||+++||||+|++..
T Consensus 153 a~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 153 SERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 33344 34455666677789999999999999998763
No 120
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.67 E-value=2.1e-07 Score=73.22 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchh
Q 029329 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRL 133 (195)
Q Consensus 56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l 133 (195)
..++..+...+-||...+.|.|.+.+..|++++|- |++.|++.+-+.....|..-.-.+-.....++...|......+
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iy 154 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIY 154 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999999999999999996 9999999999888765532110000000001111111122233
Q ss_pred hhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329 134 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170 (195)
Q Consensus 134 ~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~ 170 (195)
.+..| .....+++-....++|+||+++||||+|+++.
T Consensus 155 a~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 155 HRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 44444 34556666677889999999999999998764
No 121
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.65 E-value=8.1e-08 Score=72.62 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccc------------cccccCC-------------CCCcc
Q 029329 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPG-------------CSDRS 116 (195)
Q Consensus 62 ~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~-------------~~~~~ 116 (195)
+.+..|||+|.+++.+.++++.++++||.+++.+.+.++..-+ ++|+-+. ..+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 4568999999999999999999999999999999986654321 1333211 11111
Q ss_pred chhhhhhcccCCcc--ch-----hhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHH
Q 029329 117 LSHVILASDRAGGT--QR-----LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179 (195)
Q Consensus 117 ~~~~~~~~~~~g~~--~~-----l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~ 179 (195)
....+...+..... .+ -.|.+..... +-+..|..+++++|++.||||++...+++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v-~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDV-EEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH-HCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 11111111000000 00 0111111111 225789999999999999999998776666555443
No 122
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.59 E-value=2.8e-06 Score=69.33 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~ 130 (195)
..+.+.+.+..+...+.|+|+.|-|.|.|||......||++++.+++.++.-.. .+..
T Consensus 121 ~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~p----------------------e~~a 178 (256)
T PRK12319 121 QGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSP----------------------EGFA 178 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCH----------------------HHHH
Confidence 345677777788889999999999999999988889999999999987765321 1111
Q ss_pred chhhh-hhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC--h-------HHHHHHHHHHHHhhcCHHHH
Q 029329 131 QRLPR-LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG--Q-------AQLKALEIAQEINQKVQSVF 191 (195)
Q Consensus 131 ~~l~~-~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~--~-------~~~~a~~~a~~~~~~~~~~~ 191 (195)
..+-+ .--...+.+. ..+++.++++.|+||+|+|+. + +.+...+...++...++..+
T Consensus 179 ~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (256)
T PRK12319 179 SILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQL 245 (256)
T ss_pred HHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 11111 1111222333 277999999999999999742 1 22333455566666666554
No 123
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.56 E-value=1.5e-06 Score=70.65 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCC
Q 029329 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 111 (195)
Q Consensus 54 ~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~ 111 (195)
.-.++...+.+.+.|+.+.|+..|+++|..++++||.++|.+.+.+|--+.++|-.|.
T Consensus 106 AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 106 AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 3445667777899999999999999999999999999999999999999999988775
No 124
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.48 E-value=7.5e-06 Score=68.55 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~ 130 (195)
..+.+.+.+..+.....|+|+.|-|.|.|||......||++++.+++.++.-. |. |..
T Consensus 177 ~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVis------PE----------------g~a 234 (322)
T CHL00198 177 QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVAT------PE----------------ACA 234 (322)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecC------HH----------------HHH
Confidence 34566677777788999999999999988887666679999999998776532 21 111
Q ss_pred chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHH
Q 029329 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVF 191 (195)
Q Consensus 131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~ 191 (195)
..+-+ ...++.+. ...-++++++.+++|+||+|+|.- + +.+...+...++...++..+
T Consensus 235 ~Il~~--d~~~a~~a-A~~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l 305 (322)
T CHL00198 235 AILWK--DSKKSLDA-AEALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKILSPSEL 305 (322)
T ss_pred HHHhc--chhhHHHH-HHHcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 11111 12333332 334689999999999999999742 1 22333344555666666544
No 125
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.43 E-value=1e-05 Score=69.57 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~ 130 (195)
..+.+.+.+..+.....|+|+.|-|.+.+||......||+++|.+++.++.-. |. ..+.
T Consensus 244 qa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVis------PE---------------gaAs 302 (431)
T PLN03230 244 QGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVAS------PE---------------ACAA 302 (431)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecC------HH---------------HHHH
Confidence 44567777778889999999999999977776655679999999998765422 21 1111
Q ss_pred chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHHH
Q 029329 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVFR 192 (195)
Q Consensus 131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~~ 192 (195)
..+....-...+.+ ...+++.++++.|+||+|+|.- + +.+...+...++.+.++..+.
T Consensus 303 ILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~ 373 (431)
T PLN03230 303 ILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELL 373 (431)
T ss_pred HHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11111111222222 3489999999999999999742 1 222333445556666665543
No 126
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.39 E-value=1.4e-05 Score=66.79 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~ 130 (195)
..+.+.+.+..+.....|+|+.|-|.|.|||......||++++.+++.++.- ++ .|+.
T Consensus 174 ~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVi-------sP---------------Eg~a 231 (316)
T TIGR00513 174 QSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVI-------SP---------------EGCA 231 (316)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEec-------CH---------------HHHH
Confidence 3456777777788899999999999998888766667999999999877542 22 1222
Q ss_pred chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHH
Q 029329 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVF 191 (195)
Q Consensus 131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~ 191 (195)
..+-+- ..++.+..- -..+++.++++.|+||.|+|.- + +.+...+...++...++..+
T Consensus 232 ~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l 302 (316)
T TIGR00513 232 AILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEEL 302 (316)
T ss_pred HHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 221111 112222212 2577899999999999999742 1 22333445556666666554
No 127
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.37 E-value=3.1e-06 Score=66.21 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=72.2
Q ss_pred HHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEE--EEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP 134 (195)
Q Consensus 57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~--va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~ 134 (195)
.++..+...++||...+-|.+.+.|..|++++|.. ++.|++++-+....-|....-.+...--.+..--|.-....+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999999999999999999999999995 9999999988877633321100000000000000000011122
Q ss_pred hhhcH--HHHHHHHHcCCCCCHHHHHhcCccceecCCCh
Q 029329 135 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 171 (195)
Q Consensus 135 ~~ig~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~ 171 (195)
...|. ..-.+.+-....++|+||+++||||+|....+
T Consensus 156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 22232 22233344567799999999999999987643
No 128
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.1e-06 Score=71.19 Aligned_cols=141 Identities=13% Similarity=0.238 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Cccc
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAAL 78 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~ 78 (195)
.+.+.+.++.++++.. -++|+.=+.|+ | +.+.+++..+.+.+.+.|++..+. ++|.
T Consensus 42 ~~~l~r~l~~A~~~~a-~~vvl~ldTPG----G----------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~Aa 100 (436)
T COG1030 42 ADYLQRALQSAEEENA-AAVVLELDTPG----G----------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAA 100 (436)
T ss_pred HHHHHHHHHHHHhCCC-cEEEEEecCCC----c----------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchh
Confidence 3567888888887652 34444333333 1 246788999999999999999885 5799
Q ss_pred chhHHHhhhCCEEEEeCCceeecccccccc-cCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHH
Q 029329 79 GGGLEMALACDLRICGEAALLGLPETGLAI-IPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGK 155 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~-~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~ 155 (195)
++|..++++||+..|+|.+.++-...-.+- .+.....+.+.. ..-..-+.+.-| ...+.+++.....++++
T Consensus 101 SAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~------~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~ 174 (436)
T COG1030 101 SAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAA------VAYIRSLAEERGRNPTWAERFVTENLSLTAE 174 (436)
T ss_pred chhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHH------HHHHHHHHHHcCCChHHHHHHhhhccCCChh
Confidence 999999999999999999999876554332 111111111111 000111222223 56688888889999999
Q ss_pred HHHhcCccceecCC
Q 029329 156 DAMSLGLVNYYVPA 169 (195)
Q Consensus 156 eA~~~Glvd~v~~~ 169 (195)
||++.|++|-+..+
T Consensus 175 eA~~~~vid~iA~~ 188 (436)
T COG1030 175 EALRQGVIDLIARD 188 (436)
T ss_pred HHHhcCccccccCC
Confidence 99999999998765
No 129
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.31 E-value=2.9e-05 Score=65.07 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~ 130 (195)
..+.+.+.+..+.....|+|+.|-|.+.|||......||++++.+++.++. .++ .|+.
T Consensus 174 ~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isP---------------Eg~a 231 (319)
T PRK05724 174 QSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISP---------------EGCA 231 (319)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEee-------cCH---------------HHHH
Confidence 356677788888899999999999999888876666799999999987754 222 2222
Q ss_pred chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
..+-+- ..++.+..- ...+++.++++.|+||+|+|.
T Consensus 232 ~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 232 SILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred HHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence 222211 123333322 557899999999999999974
No 130
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.31 E-value=3.3e-05 Score=70.49 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCc
Q 029329 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGG 129 (195)
Q Consensus 50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~ 129 (195)
.....+.+.+..+.....|+|++|-|.|.|||......||+++|.+++.++.-. |. +++
T Consensus 264 Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVis------PE---------------gaA 322 (762)
T PLN03229 264 GQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVAS------PE---------------ACA 322 (762)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecC------HH---------------HHH
Confidence 345667777778889999999999999998888888889999999998765422 22 111
Q ss_pred cchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 130 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 130 ~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
...+.. ..++.+ +...-.+++++.+++|+||.|+|.
T Consensus 323 sILwkd---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 323 AILWKS---AKAAPK-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred HHHhcC---cccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 111111 122222 234468999999999999999984
No 131
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=98.28 E-value=7.8e-06 Score=65.20 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccch
Q 029329 55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQR 132 (195)
Q Consensus 55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~ 132 (195)
...++..+...+-||...+-|.|.+.+..|++++|- |++.+++++-+....-|..-.-.+-.....++...|......
T Consensus 96 glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~i 175 (222)
T PRK12552 96 AFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEI 175 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666778889999999999999999999996 999999999998876443211000000000111111111222
Q ss_pred hhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 133 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 133 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
+.+..| .....+.+-.-..++|+||+++||||+|..+
T Consensus 176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 333344 2344455556677999999999999999865
No 132
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.11 E-value=0.00012 Score=60.22 Aligned_cols=84 Identities=26% Similarity=0.299 Sum_probs=57.4
Q ss_pred HHHHcCCCcEEEEECCc--ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329 60 SFLEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV 137 (195)
Q Consensus 60 ~~~~~~~kp~Iaav~G~--a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i 137 (195)
.++... .|+|+.+.|+ |.||+..++..||++|+++++.+++.-.++ .....
T Consensus 131 ~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V--------------------------Ie~~~ 183 (274)
T TIGR03133 131 LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV--------------------------IEQEA 183 (274)
T ss_pred HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH--------------------------HHHhc
Confidence 344444 9999999999 899999999999999999998777643211 00011
Q ss_pred cH--HHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329 138 GK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170 (195)
Q Consensus 138 g~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~ 170 (195)
|. --..+-.|.-+.+.+...+..|++|.++++|
T Consensus 184 G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 184 GVEEFDSRDRALVWRTTGGKHRFLSGDADVLVEDD 218 (274)
T ss_pred CCCccCHHHhcccccccchHhHhhcccceEEeCCH
Confidence 10 0112222344556667788899999999874
No 133
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.85 E-value=0.00028 Score=58.81 Aligned_cols=42 Identities=36% Similarity=0.498 Sum_probs=36.3
Q ss_pred HHHHcCCCcEEEEECCc--ccchhHHHhhhCCEEEEeCCceeecc
Q 029329 60 SFLEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLP 102 (195)
Q Consensus 60 ~~~~~~~kp~Iaav~G~--a~ggG~~la~~~D~~va~~~a~~~~~ 102 (195)
..+... .|+|+.+.|. |+||+...+..||++|+++++.+++.
T Consensus 140 ~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 140 VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 344444 9999999999 99999999999999999999887764
No 134
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.84 E-value=0.00045 Score=55.83 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHH---cCCCcEEEEECCcccchhH-HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329 49 HFYVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124 (195)
Q Consensus 49 ~~~~~~~~~~~~~~~---~~~kp~Iaav~G~a~ggG~-~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~ 124 (195)
....+.+.+++..+. ..+.|+|+.|-|.++|||+ .+.+.+|.++|-+++.++ +.+.
T Consensus 87 ~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~------------- 146 (238)
T TIGR03134 87 LGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDL------------- 146 (238)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCH-------------
Confidence 334455555555554 5569999999999998876 444458988888777654 3333
Q ss_pred ccCCccchhhhhhcHHHHHHHHHcC--CCCCHHHHHhcCccceecCCCh
Q 029329 125 DRAGGTQRLPRLVGKSVAKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ 171 (195)
Q Consensus 125 ~~~g~~~~l~~~ig~~~a~~l~l~g--~~~~a~eA~~~Glvd~v~~~~~ 171 (195)
.++...+-+- .....++.-.- ...+...+.++|+||+|+++.+
T Consensus 147 --e~aa~I~~~~--~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 147 --ESMARVTKRS--VEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred --HHHHHHHccC--HhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 2222211111 12333332221 2356778999999999998654
No 135
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.82 E-value=0.00088 Score=55.63 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHH-HHcCCCcEEEEECCcccchh
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~Iaav~G~a~ggG 81 (195)
+.+.++++.+.+. .+-+|++..++ |.-+.+ .-.....+. .+...+.+ ...-..|.|+.+.|+|.||+
T Consensus 155 eKi~ra~e~A~~~-rlPlV~l~~SG------GARmQE----g~~sL~qma-k~saa~~~~~~~~~vP~Isvl~gPt~GG~ 222 (296)
T CHL00174 155 EKITRLIEYATNE-SLPLIIVCASG------GARMQE----GSLSLMQMA-KISSALYDYQSNKKLFYISILTSPTTGGV 222 (296)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCC------Cccccc----cchhhhhhH-HHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence 4566777777665 35566665542 233322 101111111 12112233 22567899999999999997
Q ss_pred HH-HhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329 82 LE-MALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 160 (195)
Q Consensus 82 ~~-la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~ 160 (195)
.. +++.||++|+.+++.+++.-.++ ....+|.. +.-.-=+++-.++.
T Consensus 223 aas~a~l~Diiiae~~A~IgfAGPrV--------------------------Ie~t~ge~------lpe~fq~ae~l~~~ 270 (296)
T CHL00174 223 TASFGMLGDIIIAEPNAYIAFAGKRV--------------------------IEQTLNKT------VPEGSQAAEYLFDK 270 (296)
T ss_pred HHHHHHcccEEEEeCCeEEEeeCHHH--------------------------HHHhcCCc------CCcccccHHHHHhC
Confidence 65 47779999998888776653221 00000100 00001136667789
Q ss_pred CccceecCCChHHHHHHHHHHH
Q 029329 161 GLVNYYVPAGQAQLKALEIAQE 182 (195)
Q Consensus 161 Glvd~v~~~~~~~~~a~~~a~~ 182 (195)
|+||.|++..++.+...++.+-
T Consensus 271 G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 271 GLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred cCceEEEcHHHHHHHHHHHHHh
Confidence 9999999998887776666543
No 136
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.81 E-value=0.00083 Score=55.72 Aligned_cols=139 Identities=15% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.++++.+.+. .+-+|.+.-+ +++ -+.+ .......+ ..+...+.++.....|.|+++.|+|.||+.
T Consensus 142 eKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE----g~~sL~~~-ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 142 EKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE----ALLSLMQM-AKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc----chhHHHhH-HHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 3456666666554 4566666554 222 1211 11111111 122334455666789999999999999964
Q ss_pred -HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcC
Q 029329 83 -EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLG 161 (195)
Q Consensus 83 -~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~G 161 (195)
.+++.+|++++.+++.+++.-.++ +...++.. +.-+.-+++-+.+.|
T Consensus 210 as~a~~~D~iia~p~A~ig~aGprV--------------------------ie~ti~e~------lpe~~q~ae~~~~~G 257 (285)
T TIGR00515 210 ASFAMLGDLNIAEPKALIGFAGPRV--------------------------IEQTVREK------LPEGFQTSEFLLEHG 257 (285)
T ss_pred HHHHhCCCEEEEECCeEEEcCCHHH--------------------------HHHHhcCc------cchhcCCHHHHHhCC
Confidence 567899999999998777643221 11111110 000112456577889
Q ss_pred ccceecCCChHHHHHHHHHHHHhh
Q 029329 162 LVNYYVPAGQAQLKALEIAQEINQ 185 (195)
Q Consensus 162 lvd~v~~~~~~~~~a~~~a~~~~~ 185 (195)
+||.|+++.++.+...++.+.+..
T Consensus 258 ~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 258 AIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred CCcEEECcHHHHHHHHHHHHHHhh
Confidence 999999999888887777765544
No 137
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.79 E-value=0.0011 Score=55.12 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.++++.+.+. .+=+|.+.-+ | |..+.+ ....... ...+...+.++.....|.|+.+.|+|.||+.
T Consensus 143 eKi~r~~e~A~~~-~lPlV~l~ds-g-----GarmqE----gi~sL~~-~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 143 EKIVRAVERAIEE-KCPLVIFSAS-G-----GARMQE----GLLSLMQ-MAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-C-----Ccchhh----hhhHHHh-HHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 3456666666655 4566666543 3 222211 0000111 1122334445666789999999999999964
Q ss_pred -HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcC
Q 029329 83 -EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLG 161 (195)
Q Consensus 83 -~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~G 161 (195)
.+++.+|++++.+++.+++.-.++ +...++.... -+.-+++-+.+.|
T Consensus 211 as~a~~~D~iia~p~A~ig~aGprv--------------------------ie~~~~e~lp------e~~~~ae~~~~~G 258 (292)
T PRK05654 211 ASFAMLGDIIIAEPKALIGFAGPRV--------------------------IEQTVREKLP------EGFQRAEFLLEHG 258 (292)
T ss_pred HHHHHcCCEEEEecCcEEEecCHHH--------------------------HHhhhhhhhh------hhhcCHHHHHhCC
Confidence 567889999999988776643211 0111111110 0112456677899
Q ss_pred ccceecCCChHHHHHHHHHHHHhhcC
Q 029329 162 LVNYYVPAGQAQLKALEIAQEINQKV 187 (195)
Q Consensus 162 lvd~v~~~~~~~~~a~~~a~~~~~~~ 187 (195)
+||.|+++.++.+...++.+.+...+
T Consensus 259 ~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 259 AIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred CCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 99999999999888888877766554
No 138
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.50 E-value=0.0028 Score=51.72 Aligned_cols=140 Identities=18% Similarity=0.284 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHH--HHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
+.+.++++++-.+ ....|+++.+| |.-+.+ .... ...++...+.++.....|.|+.+..++.||
T Consensus 144 eki~ra~E~A~e~-k~P~v~f~aSG------GARMQE-------g~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGG 209 (294)
T COG0777 144 EKITRAIERAIED-KLPLVLFSASG------GARMQE-------GILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG 209 (294)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecCc------chhHhH-------HHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 4677888888766 47788887764 332221 1111 123556677788889999999999999888
Q ss_pred -hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329 81 -GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159 (195)
Q Consensus 81 -G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 159 (195)
...+++..|+.++-|.+.++|.-.++ .+ +.....++.. -=+++-.++
T Consensus 210 VsASfA~lGDi~iAEP~AlIGFAGpRV------IE----------------QTire~LPeg----------fQ~aEfLle 257 (294)
T COG0777 210 VSASFAMLGDIIIAEPGALIGFAGPRV------IE----------------QTIREKLPEG----------FQTAEFLLE 257 (294)
T ss_pred hhHhHHhccCeeecCcccccccCcchh------hh----------------hhhcccCCcc----------hhhHHHHHH
Confidence 57999999999999999888865431 00 0001111111 112677789
Q ss_pred cCccceecCCChHHHHHHHHHHHHhhcCH
Q 029329 160 LGLVNYYVPAGQAQLKALEIAQEINQKVQ 188 (195)
Q Consensus 160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~ 188 (195)
.|+||.|++..++......+...+...++
T Consensus 258 hG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 258 HGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred cCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 99999999998888877777766655443
No 139
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.46 E-value=0.0024 Score=57.08 Aligned_cols=129 Identities=26% Similarity=0.345 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEecc--CcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGA--DLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
+.+.++++.+.++. +-.|.+.-+ .|. ++.+- -.....+.+ +.....++.. ..|+|+++.|+|.||
T Consensus 79 ~Ki~ra~~~A~~~~-~P~v~l~ds------gGa~~r~~eg----~~~l~~~g~-i~~~~~~~~~-~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 79 EKIARAIELALENG-LPLVYLVDS------GGAFLRMQEG----VESLMGMGR-IFRAIARLSG-GIPQISVVTGPCTGG 145 (493)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEEEE------SSBCGGGGGH----HHHHHHHHH-HHHHHHHHHT-TS-EEEEEESEEEGG
T ss_pred eeeehHHHHHHHcC-CCcEEeccc------cccccccchh----hhhhhhhHH-HHHHHHHHhc-CCCeEEEEccccccc
Confidence 45666777776653 444444332 233 33221 111222222 3334445566 999999999999999
Q ss_pred hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH---
Q 029329 81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD--- 156 (195)
Q Consensus 81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e--- 156 (195)
|..++..||++|+.++ +.+.+.-. . .+ + ..+|+.++.++
T Consensus 146 ~A~~~~~~d~~i~~~~~a~i~l~GP------~------------------------vv-----~--~~~Ge~~~~~~lgG 188 (493)
T PF01039_consen 146 GAYLAALSDFVIMVKGTARIFLAGP------R------------------------VV-----E--SATGEEVDSEELGG 188 (493)
T ss_dssp GGHHHHHSSEEEEETTTCEEESSTH------H------------------------HH-----H--HHHSSCTSHHHHHB
T ss_pred hhhcccccCccccCccceEEEeccc------c------------------------cc-----c--cccCccccchhhhh
Confidence 9999999999999998 77655321 1 11 1 23457777654
Q ss_pred ----HHhcCccceecCCChHHHHHHHHHHHHh
Q 029329 157 ----AMSLGLVNYYVPAGQAQLKALEIAQEIN 184 (195)
Q Consensus 157 ----A~~~Glvd~v~~~~~~~~~a~~~a~~~~ 184 (195)
+...|.+|.++++++ ++.+.++++.
T Consensus 189 ~~~h~~~sG~~d~v~~de~---~a~~~ir~~l 217 (493)
T PF01039_consen 189 ADVHAAKSGVVDYVVDDEE---DALAQIRRLL 217 (493)
T ss_dssp HHHHHHTSSSSSEEESSHH---HHHHHHHHHH
T ss_pred hhhhcccCCCceEEEechH---HHHHHHHHhh
Confidence 347899999998753 4444444443
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.43 E-value=0.0053 Score=55.05 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHH
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~ 83 (195)
...+.++.+.+. ++=+|.|.-. ++ |..|.+ .+.....+...+++..+.....|.|+.|-|.+.|||+.
T Consensus 338 K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~---------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 338 KIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVN---------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 345555655543 4555555443 22 544432 22233455666777888889999999999999888665
Q ss_pred Hhhh----CCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh----cHHHH-HHHH--HcCCCC
Q 029329 84 MALA----CDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV----GKSVA-KDII--FTGRKV 152 (195)
Q Consensus 84 la~~----~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i----g~~~a-~~l~--l~g~~~ 152 (195)
-++. +|++++.+++.++.-...-+. ...+.+.+ ....+ .+.+ ..-+..
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~pe~a~---------------------~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGPAGAA---------------------NIIFRKDIKEAKDPAATRKQKIAEYREEFA 464 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCHHHHH---------------------HHHhhhhcccccCHHHHHHHHHHHHHHhhc
Confidence 5443 999999999877664332111 00000000 01111 1110 112244
Q ss_pred CHHHHHhcCccceecCCChHHHHHHHHHHHHh
Q 029329 153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 184 (195)
Q Consensus 153 ~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~ 184 (195)
++..+.+.|+||.|+++.+..+...+..+.+.
T Consensus 465 ~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 465 NPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred CHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 68889999999999999887766666555443
No 141
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.37 E-value=0.00068 Score=55.71 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccc
Q 029329 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131 (195)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~ 131 (195)
.+.+.+-+..+..++.|+|+.|-|-.-+||..=...+|.++|-++++++.- .|. +.++.
T Consensus 174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVi------sPE---------------G~AsI 232 (317)
T COG0825 174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVI------SPE---------------GCASI 232 (317)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeec------Chh---------------hhhhh
Confidence 345667777888999999999999998888888888999999999988641 232 22222
Q ss_pred hhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 132 ~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~ 169 (195)
.|. ..+++.+. ...-.+++++.+++|+||.|+|.
T Consensus 233 LWk---D~~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 233 LWK---DASKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred hhc---ChhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 222 23344444 33468999999999999999975
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.01 E-value=0.0093 Score=53.51 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCCcEEEEECCcccchhHHHhhhCCEEEEeCCc-eeec
Q 029329 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGL 101 (195)
Q Consensus 65 ~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a-~~~~ 101 (195)
-..|.|+++.|+|.||+......||++|+.+++ .+.+
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~ 190 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI 190 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence 468999999999999998888899999999974 4444
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.68 E-value=0.043 Score=49.83 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=34.5
Q ss_pred HHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeec
Q 029329 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGL 101 (195)
Q Consensus 61 ~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~ 101 (195)
++.....|.|+++.|.|.|||......||++|+.++ +.+.+
T Consensus 200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 355567999999999999999999999999999875 54544
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.08 E-value=0.037 Score=50.23 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124 (195)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~ 124 (195)
....+...+++..+.....|.|+.+-|.++|+|..-.+ ..|++++.++++++. .++
T Consensus 422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~------------- 481 (569)
T PLN02820 422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGG------------- 481 (569)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCH-------------
Confidence 34567788888889999999999999999998876665 567777777766644 332
Q ss_pred ccCCccchhhh-hh------------cHHHH-HHHH--HcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHH
Q 029329 125 DRAGGTQRLPR-LV------------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183 (195)
Q Consensus 125 ~~~g~~~~l~~-~i------------g~~~a-~~l~--l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~ 183 (195)
.++...+.+ .+ ....+ ++.+ ..-+..++-.+-+.|+||.|+++.+-........+..
T Consensus 482 --e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~ 554 (569)
T PLN02820 482 --AQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAA 554 (569)
T ss_pred --HHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHh
Confidence 111111111 00 01000 1110 1122456778889999999999977655444444433
No 145
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.041 Score=44.58 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP 134 (195)
Q Consensus 57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~ 134 (195)
.++..+..++-||-...-|.|.+-|..|..+.- .|++-|++++-+....-|--....+-.+--.|+.-.|......+.
T Consensus 141 AIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a 220 (275)
T KOG0840|consen 141 AIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYA 220 (275)
T ss_pred hHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666888887766655543 366666665555444433111100000000011111100011112
Q ss_pred hhhcH--HHHHHHHHcCCCCCHHHHHhcCccceecC
Q 029329 135 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168 (195)
Q Consensus 135 ~~ig~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~ 168 (195)
+..|. ....+-+-.-+.++++||+++||||+|..
T Consensus 221 ~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 221 KHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 22221 11222233456689999999999999986
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.14 E-value=0.034 Score=49.73 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhC----CEEEEeCCceeeccccc--ccccCCCCCccchhhhh
Q 029329 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC----DLRICGEAALLGLPETG--LAIIPGCSDRSLSHVIL 122 (195)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~----D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~~~ 122 (195)
....+...+++..+..++.|.|..+-|.+.|+|+.-.... |++++.|+++++.-... ..+.-. ..
T Consensus 350 ~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~---------~~ 420 (493)
T PF01039_consen 350 AGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYR---------DE 420 (493)
T ss_dssp TTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTH---------HH
T ss_pred cchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeeh---------hh
Confidence 3456778888999999999999999999999988666666 89988888887663322 121110 00
Q ss_pred hcccCCccchhhhhhcHH-HHHHHHH-cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhh
Q 029329 123 ASDRAGGTQRLPRLVGKS-VAKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 185 (195)
Q Consensus 123 ~~~~~g~~~~l~~~ig~~-~a~~l~l-~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~ 185 (195)
... . ...+.-... ....+-. .-+.-++..+.+.+++|.|+++.+..........-..+
T Consensus 421 ~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~ 480 (493)
T PF01039_consen 421 LEA-A----EAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQ 480 (493)
T ss_dssp HHH-S----CHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTT
T ss_pred hhh-h----hcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHh
Confidence 000 0 000000000 1111111 11225788999999999999998877665555444433
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.51 E-value=0.28 Score=44.01 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=32.4
Q ss_pred HHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCc
Q 029329 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA 97 (195)
Q Consensus 61 ~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a 97 (195)
++... .|.|++|-|.|.|||..+...||++|+.++.
T Consensus 159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 44445 9999999999999999999999999999984
No 148
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=90.66 E-value=1.7 Score=35.01 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEECCcccchhH-HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccc
Q 029329 53 NTLRSTFSFLEALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131 (195)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~-~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~ 131 (195)
....+.+...+...-|+|+.+-|.+++||| .-.+.+|.+++-+++.+ -..+- -+..
T Consensus 92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i-------~vM~~----------------~s~A 148 (234)
T PF06833_consen 92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMI-------HVMGK----------------PSAA 148 (234)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCee-------ecCCh----------------HHhH
Confidence 334455555677899999999999999997 78889999988774322 22111 0111
Q ss_pred hhhhhhcHHHHHHHHHcCCC--CCHHHHHhcCccceecCC
Q 029329 132 RLPRLVGKSVAKDIIFTGRK--VSGKDAMSLGLVNYYVPA 169 (195)
Q Consensus 132 ~l~~~ig~~~a~~l~l~g~~--~~a~eA~~~Glvd~v~~~ 169 (195)
+.. +.....-.++.-+--+ ++.+--.++|.++++.+.
T Consensus 149 RVT-k~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 149 RVT-KRPVEELEELAKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred HHh-hcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 221 1234444555555444 345777899999999874
No 149
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=88.40 E-value=0.94 Score=40.72 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceee
Q 029329 48 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLG 100 (195)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~ 100 (195)
.....+....++..+.+...|.|..+-|.++|||+.... ..|+.+|.+++.++
T Consensus 379 ~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia 435 (526)
T COG4799 379 YGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA 435 (526)
T ss_pred hChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence 334567778888999999999999999999999865543 45556655555544
No 150
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=88.35 E-value=2 Score=31.78 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
.+.+.++.+.+||++++|++.-.+-+ + -+.+.+..++.... ||+|+..-|..-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~--------------d-------~~~f~~~~~~a~~~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG--------------D-------GRRFLEAARRAARR-KPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S----------------------HHHHHHHHHHHCCC-S-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC--------------C-------HHHHHHHHHHHhcC-CCEEEEeCCCch
Confidence 36788899999999999999886311 0 13445566666656 999999998753
No 151
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=87.01 E-value=2.8 Score=34.76 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
.+.++|+.+++||+.++|++-|.-|+ + .++. -.+.+.. ...+||+|+.+-|.+.
T Consensus 187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~-------aEe~-------AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEADPETEAIVMIGEIGG------P-------AEEE-------AAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhcCccccEEEEEecCCC------c-------HHHH-------HHHHHHH-hccCCCEEEEEeccCC
Confidence 46789999999999999999997321 1 1111 2223333 2345999999999876
No 152
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=86.10 E-value=10 Score=33.65 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=53.1
Q ss_pred CCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHH---HhhhCCEEE
Q 029329 16 SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE---MALACDLRI 92 (195)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~---la~~~D~~v 92 (195)
-.+-.|.+... ++ |-.|.+... ....+....++.+....+.|-|..+.|.+.||-+. .+++-|+.+
T Consensus 383 ~~IPLi~l~ni-~G-fm~g~~~e~---------~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~y 451 (536)
T KOG0540|consen 383 RNIPLIFLQNI-TG-FMVGRAAEA---------GGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINY 451 (536)
T ss_pred cCCcEEEEEcc-CC-ccccchhhh---------hchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeE
Confidence 34555555544 22 666665532 23345566777788888999999999999997554 667889999
Q ss_pred EeCCceeeccc
Q 029329 93 CGEAALLGLPE 103 (195)
Q Consensus 93 a~~~a~~~~~e 103 (195)
+.|++++++--
T Consensus 452 awP~A~IavmG 462 (536)
T KOG0540|consen 452 AWPNARIAVMG 462 (536)
T ss_pred Ecccceeeecc
Confidence 88888876644
No 153
>PLN02522 ATP citrate (pro-S)-lyase
Probab=84.09 E-value=3 Score=38.35 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeC-CCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
++.+.|+.+++||++++|++-+. |++ +. +.+.+..++.. ..||||+..-|.+.
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e----~~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR-----------------DE----YSLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch-----------------hH----HHHHHHHHHhc-CCCCEEEEeccCCC
Confidence 36788999999999999999997 431 11 12223333333 68999999988876
No 154
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=83.58 E-value=3.6 Score=34.83 Aligned_cols=54 Identities=9% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
++.+.|+.+++||+.++|++-+..++ . ...+..+|.+. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~--------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGG-----T--------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCC-----c--------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 36788999999999999999997321 1 11122222221 2468999999999874
No 155
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.06 E-value=5 Score=33.60 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCC---CcEEEEE-EeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 3 RGLKHAFETISEDS---SANVVMI-RSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 3 ~~l~~~l~~~~~d~---~v~~vvl-~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
.++.++|+.+...+ .+-+||| +| |+.+ -||..| .-..+.+.+..+|.|||++| ||-.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RG--GGs~---eDL~~F-------------N~e~varai~~~~~PvisaI-GHe~ 118 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRG--GGSI---EDLWAF-------------NDEEVARAIAASPIPVISAI-GHET 118 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecC--CCCh---HHhccc-------------ChHHHHHHHHhCCCCEEEec-CCCC
Confidence 57889999998665 5666666 44 2211 133222 12357788999999999988 4443
Q ss_pred chhHHHhhhCCEEEEeCCc
Q 029329 79 GGGLEMALACDLRICGEAA 97 (195)
Q Consensus 79 ggG~~la~~~D~~va~~~a 97 (195)
-- ...=+.+|.|..||++
T Consensus 119 D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 119 DF-TIADFVADLRAPTPTA 136 (319)
T ss_pred Cc-hHHHHHHHhhCCCHHH
Confidence 22 4556788899988884
No 156
>smart00250 PLEC Plectin repeat.
Probab=80.04 E-value=1.5 Score=24.76 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=17.0
Q ss_pred cCCCCCHHHHHhcCccce
Q 029329 148 TGRKVSGKDAMSLGLVNY 165 (195)
Q Consensus 148 ~g~~~~a~eA~~~Glvd~ 165 (195)
+|++++-.||.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 799999999999999985
No 157
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=79.76 E-value=5.4 Score=35.17 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
.++.++|+.++..+++-+|||.= ||+.+ -||..| .-..+.+.+.++|.|||++| ||-.-- .
T Consensus 173 ~~i~~al~~~~~~~~~dviii~R-GGGs~---eDL~~F-------------n~e~~~rai~~~~~Pvis~i-GHe~D~-t 233 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGR-GGGSL---EDLWSF-------------NDEKVARAIFLSKIPIISAV-GHETDF-T 233 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEec-CCCCH---HHhhhc-------------CcHHHHHHHHcCCCCEEEec-CcCCCc-c
Confidence 57888999998766677776633 23211 133222 12257788999999999988 333221 3
Q ss_pred HHhhhCCEEEEeCCc--eeecc
Q 029329 83 EMALACDLRICGEAA--LLGLP 102 (195)
Q Consensus 83 ~la~~~D~~va~~~a--~~~~~ 102 (195)
..=+.+|.|..||++ .+-.|
T Consensus 234 i~D~vAd~ra~TPtaaae~~~p 255 (432)
T TIGR00237 234 ISDFVADLRAPTPSAAAEIVSP 255 (432)
T ss_pred HHHHhhhccCCCcHHHHHHhCc
Confidence 445778999988883 44444
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=76.90 E-value=6.8 Score=34.57 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
.++.++++.+++.+++.++|+-= || +-+.+ .+.|-+ ..+.+.++.++.|+|++| ||-.-- .
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaR-GG------GSiED--------LW~FNd--E~vaRAi~~s~iPvISAV-GHEtD~-t 239 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVAR-GG------GSIED--------LWAFND--EIVARAIAASRIPVISAV-GHETDF-T 239 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEec-Cc------chHHH--------HhccCh--HHHHHHHHhCCCCeEeec-ccCCCc-c
Confidence 57889999999988899888732 22 22222 221111 246778999999999998 332211 2
Q ss_pred HHhhhCCEEEEeCC--ceeecc
Q 029329 83 EMALACDLRICGEA--ALLGLP 102 (195)
Q Consensus 83 ~la~~~D~~va~~~--a~~~~~ 102 (195)
..=..+|.|-.||+ +.+..|
T Consensus 240 L~DfVAD~RApTPTaAAE~~vP 261 (440)
T COG1570 240 LADFVADLRAPTPTAAAELVVP 261 (440)
T ss_pred HHHhhhhccCCCchHHHHHhCC
Confidence 23466788888887 344444
No 159
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=76.11 E-value=8.4 Score=32.33 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
++.+.|+.+.+||+.++|++...++ |.+++ ..++++.... ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~---------------d~~~f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEE---------------DAAAFIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHH---------------HHHHHHHHhc-CCCCEEEEEecCCC
Confidence 3567888888889999988888631 22221 1122222222 38999999988873
No 160
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=75.61 E-value=7.2 Score=29.37 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g 79 (195)
...++|....+||++++|++-+..|-.-| ......+...+...-. ...++|+|+.+.|-..-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 56789999999999999999876331111 1111111211111111 24689999999998653
No 161
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=72.70 E-value=1.3 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.7
Q ss_pred HcCCCCCHHHHHhcCcccee
Q 029329 147 FTGRKVSGKDAMSLGLVNYY 166 (195)
Q Consensus 147 l~g~~~~a~eA~~~Glvd~v 166 (195)
-+|++++-++|.+.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 46899999999999999853
No 162
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=71.89 E-value=13 Score=31.02 Aligned_cols=52 Identities=13% Similarity=0.369 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHc-CCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA-LPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~Iaav~G~a~ 78 (195)
++.+.|+.+.+||++++|++...+. ..+. . +....+.. ..||+|+..-|..-
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~---~~~~----------~----------~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG---GSAE----------E----------EAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC---CchH----------H----------HHHHHHHhcCCCCEEEEEecCCC
Confidence 4678889999999999999988631 1000 0 11112222 68999999988863
No 163
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=69.20 E-value=5.3 Score=29.92 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCcEEEEEEeCCCCceEeccCcchhhc
Q 029329 16 SSANVVMIRSSVPKVFCAGADLKERRQ 42 (195)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~Dl~~~~~ 42 (195)
+++++.=+.|+ +++.|+|+||+....
T Consensus 78 ESi~v~D~Agn-~hVLCaGIDLNPAi~ 103 (178)
T PF12268_consen 78 ESIKVKDLAGN-NHVLCAGIDLNPAID 103 (178)
T ss_pred cccccccCCCC-ceeEEecccCCHhHh
Confidence 35667777787 799999999987543
No 164
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=68.58 E-value=16 Score=30.48 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeC
Q 029329 4 GLKHAFETISEDSSANVVMIRSS 26 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~ 26 (195)
++.+.|+.+.+||++++|++...
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 36788899999999999999876
No 165
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=68.43 E-value=8.4 Score=34.09 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
++.+.|+.+.+||++++|++...+ + . + ...+.+..++... .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~---~------~-----~-------~~~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEG---I------K-----D-------GRKFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecC---C------C-----C-------HHHHHHHHHHHcC-CCCEEEEecCCCh
Confidence 356888999999999999998863 1 0 0 1234445555554 9999999988864
No 166
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=67.11 E-value=16 Score=32.12 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEE-EeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329 3 RGLKHAFETISEDSSANVVMI-RSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl-~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG 81 (195)
.++.++|+.++..+ .-+||| +| |+. =-||..|. -..+.+.+..+|.|||++| ||-.--
T Consensus 179 ~~i~~al~~~~~~~-~Dviii~RG--GGS---~eDL~~Fn-------------~e~v~~ai~~~~~Pvis~I-GHE~D~- 237 (438)
T PRK00286 179 ASIVAAIERANARG-EDVLIVARG--GGS---LEDLWAFN-------------DEAVARAIAASRIPVISAV-GHETDF- 237 (438)
T ss_pred HHHHHHHHHhcCCC-CCEEEEecC--CCC---HHHhhccC-------------cHHHHHHHHcCCCCEEEec-cCCCCc-
Confidence 57888999887643 555555 44 221 12332221 2257788999999999988 443221
Q ss_pred HHHhhhCCEEEEeCCc
Q 029329 82 LEMALACDLRICGEAA 97 (195)
Q Consensus 82 ~~la~~~D~~va~~~a 97 (195)
...=+.+|.|..||++
T Consensus 238 tl~D~vAd~ra~TPta 253 (438)
T PRK00286 238 TIADFVADLRAPTPTA 253 (438)
T ss_pred cHHHHhhhccCCChHH
Confidence 3455788999998884
No 167
>PRK06091 membrane protein FdrA; Validated
Probab=65.49 E-value=21 Score=32.62 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
+.+.|+.+.+||++++|++.+. +. .+... + +++....++.||||+..-|..-
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~k-pp---------------aE~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSK-PP---------------AEAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEe-cC---------------chHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 5677888888888898888874 31 01111 1 4444444569999999988654
No 168
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=58.31 E-value=36 Score=27.85 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
.+.++|+.+-.||..++||+-|.-|+ . ..++..+|.+.. .-..-+|||++.+-|...
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG-----~--------AEe~AA~flk~~-----nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG-----S--------AEEEAAEFLKEY-----NSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC-----h--------hhHHHHHHHHHh-----ccCCCCCceeEEeecccC
Confidence 46788999999999999999997432 1 122222332221 112368999999998764
No 169
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=56.18 E-value=26 Score=32.42 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC
Q 029329 7 HAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID 74 (195)
Q Consensus 7 ~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~ 74 (195)
..++++...++-+-|+++|-.+.-|.-|-. .....+.+.+.++.||.||.|.
T Consensus 354 ~v~erl~hr~dg~yvvvsgitptp~gegks----------------t~t~glvqal~~l~k~~iacvr 405 (935)
T KOG4230|consen 354 AVLERLKHRKDGKYVVVSGITPTPLGEGKS----------------TTTAGLVQALGALGKLAIACVR 405 (935)
T ss_pred HHHHHHhccCCCcEEEEeccCCCCCCCCcc----------------hhHHHHHHHHHhhCCcceeeec
Confidence 567888888888999999876655544431 2234677778889999999974
No 170
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=55.55 E-value=66 Score=22.18 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHH-HHcCCCcEEEEECC
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDG 75 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~Iaav~G 75 (195)
+++.++|+++-.++++.+|++|-. +.+.+.+.+.+ +.+..+|+|..+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~------------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD------------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh------------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 467888998877888888888753 12344455555 66789999999975
No 171
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=55.11 E-value=39 Score=22.85 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHH-HcCCCcEEEEECCcc
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAA 77 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Iaav~G~a 77 (195)
+++.++|.++-+++++.+|+++-. ..+.+.+.+..+ .....|+|..+-+.-
T Consensus 28 ee~~~~l~~l~~~~~~gIIii~e~------------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 28 EEAEEALKELLKDEDVGIIIITED------------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEHH------------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHhcCCCccEEEeeHH------------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 578889999998899999988753 233444555555 467999999997654
No 172
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=46.53 E-value=58 Score=28.12 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeC
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSS 26 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~ 26 (195)
.+++..+|+.+.++|+|+=|++||.
T Consensus 143 ~~~~~~al~YIa~hPeI~eVllSGG 167 (369)
T COG1509 143 KEEWDKALDYIAAHPEIREVLLSGG 167 (369)
T ss_pred HHHHHHHHHHHHcCchhheEEecCC
Confidence 3678999999999999999999984
No 173
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=46.36 E-value=41 Score=30.76 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh
Q 029329 15 DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 86 (195)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~ 86 (195)
.|+.-|+|-|-- .=-+=.|.+..++...+.+....-+..+.+.++.+.++..|+|.++|-+..----++..
T Consensus 322 ~P~~~VlVaTvr-aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~ 392 (557)
T PRK13505 322 KPDAVVIVATVR-ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAA 392 (557)
T ss_pred CCCEEEEEeehH-HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 466556665432 11234456666665555555555566777788888899999999999887655544443
No 174
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=40.48 E-value=6.6 Score=34.38 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEE--EeCCCCceEeccCcchhhcCChh---hHHHHH-HHHHHHHHHHHcCCCcEEEEECCc
Q 029329 3 RGLKHAFETISEDSSANVVMI--RSSVPKVFCAGADLKERRQMSPS---EIHFYV-NTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl--~g~~~~~F~~G~Dl~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
+++..++..++++. ++++|| |+++|+..+...++..+--.... ...+.. ...+.-...-...++|+|+.+|+.
T Consensus 219 ~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~ 297 (406)
T COG0793 219 EDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLVNEG 297 (406)
T ss_pred HHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEECCC
Confidence 56889999999886 888887 78877766776666543211000 000000 000000000004589999999999
Q ss_pred ccchhHHHhhhC
Q 029329 77 ALGGGLEMALAC 88 (195)
Q Consensus 77 a~ggG~~la~~~ 88 (195)
..+++=.++.+-
T Consensus 298 SASAsEI~agal 309 (406)
T COG0793 298 SASASEIFAGAL 309 (406)
T ss_pred CccHHHHHHHHH
Confidence 888875554443
No 175
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=39.83 E-value=62 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 16 SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
+...++||||+.-.+|+ |- .++..+.+++..+....|+++...-||
T Consensus 58 ~ky~gfvIsGS~~dAf~---d~------------dWI~KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 58 EKYDGFVISGSKHDAFS---DA------------DWIKKLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred hhhceEEEeCCcccccc---cc------------hHHHHHHHHHHHHHhhccceEEEeccH
Confidence 34678888887555555 32 235667788888888889988776665
No 176
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=37.41 E-value=1.2e+02 Score=24.49 Aligned_cols=46 Identities=30% Similarity=0.534 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEE---------CCcccchh-----HHHhhhCCEE-EEeCCc
Q 029329 52 VNTLRSTFSFLEALPIPTIAVI---------DGAALGGG-----LEMALACDLR-ICGEAA 97 (195)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Iaav---------~G~a~ggG-----~~la~~~D~~-va~~~a 97 (195)
.+.+.+.++-+...+||..-++ .|.|+|-| ++.++.|.-- |..|+.
T Consensus 124 y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~ 184 (262)
T KOG3040|consen 124 YQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSP 184 (262)
T ss_pred HHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCH
Confidence 4678888888999998877665 48888876 4555555553 333443
No 177
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=36.62 E-value=37 Score=24.12 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeC
Q 029329 3 RGLKHAFETISEDSSANVVMIRSS 26 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (195)
+++.+.++.+++|++|.+|++--.
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCC
Confidence 578999999999999999999764
No 178
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=34.91 E-value=51 Score=26.50 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcC-CCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc-ccchh
Q 029329 4 GLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA-ALGGG 81 (195)
Q Consensus 4 ~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~-a~ggG 81 (195)
...++|+++..+ .+|.-||..+. .+.+..|+|. .+.+++.--|..--.-++|. |.||.
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~-TG~~~PglD~-------------------~l~~~LgL~~~v~R~~i~~~GC~gg~ 166 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSC-TGIAAPGLDA-------------------RLINRLGLRPDVQRTPIFGMGCAGGA 166 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEES-SSSECS-HHH-------------------HHHHHHT--TTSEEEEEES-GGGHHH
T ss_pred HHHHHHHHcCCCCcccceEEEEec-CCcCCCchhH-------------------HHHhcCCCCCCcEEEEEeccchhhHH
Confidence 445677777644 46777776665 3578888877 34455544444444455554 56777
Q ss_pred HHHhhhCCEEEEeCCcee
Q 029329 82 LEMALACDLRICGEAALL 99 (195)
Q Consensus 82 ~~la~~~D~~va~~~a~~ 99 (195)
-.|..+.|+.-+.++++.
T Consensus 167 ~~L~~A~~~~~~~p~a~V 184 (226)
T PF00195_consen 167 AGLRRAKDIARANPGARV 184 (226)
T ss_dssp HHHHHHHHHHHHSTT-EE
T ss_pred HHHHHHHHHHhCCccceE
Confidence 799999998777677654
No 179
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=33.27 E-value=1.6e+02 Score=24.79 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEe
Q 029329 2 LRGLKHAFETISEDSSANVVMIRS 25 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g 25 (195)
|.+|.+.+++.-++++..++||+-
T Consensus 62 w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 62 WLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred HHHHHHHHHHHhccCCCCEEEEec
Confidence 345666666654556666666654
No 180
>PRK05665 amidotransferase; Provisional
Probab=33.10 E-value=66 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 51 YVNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
+.....++++.+....+|+++..-|+
T Consensus 76 wi~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 76 WIQTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 34556667777777789998666554
No 181
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=32.52 E-value=1.3e+02 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEe
Q 029329 2 LRGLKHAFETISEDSSANVVMIRS 25 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g 25 (195)
+..|.+.+++.-.++++.++||+-
T Consensus 90 w~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 90 LLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeC
Confidence 445666666665666677777764
No 182
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=30.56 E-value=56 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcc
Q 029329 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK 38 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~ 38 (195)
+.+.+..+-.||+||.+|+.|...+..-+|.-|.
T Consensus 55 IEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~ 88 (176)
T PF04208_consen 55 IEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL 88 (176)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCCcchHHHH
Confidence 5567778889999999999997555444454443
No 183
>PRK14053 methyltransferase; Provisional
Probab=30.33 E-value=65 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhh
Q 029329 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~ 41 (195)
+.+.+..+-.||+||.+|+.|...+..-+|.-|..+.
T Consensus 52 IEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~ 88 (194)
T PRK14053 52 VEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIH 88 (194)
T ss_pred HHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 4566777779999999999998666777777776654
No 184
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.54 E-value=72 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEECCc
Q 029329 52 VNTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
.+.+.+.+..+.+++||+||.+|-.
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4678889999999999999999854
No 185
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=29.25 E-value=52 Score=27.33 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCC
Q 029329 5 LKHAFETISEDSSANVVMIRSSV 27 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~ 27 (195)
+...++.+.+|+.||+|+++|+.
T Consensus 8 ~~~Il~~A~~d~rIraV~l~GSR 30 (282)
T PF04439_consen 8 MDLILEFAKQDERIRAVILNGSR 30 (282)
T ss_dssp HHHHHHHHHH-TTEEEEEE----
T ss_pred HHHHHHHHhcCCcEEEEEEecCC
Confidence 44566777799999999999973
No 186
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=28.88 E-value=2.2e+02 Score=20.33 Aligned_cols=50 Identities=12% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
+++.++|+++-.++++.+|++|-. ..+.+++.+.+.. ...|+|-.+-+.-
T Consensus 46 eei~~~~~~~l~~~digIIlIte~------------------------~a~~i~~~I~~~~-~~~PaIieIP~k~ 95 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQH------------------------IAEMIRHAVDAHT-RSIPAVLEIPSKD 95 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHH------------------------HHHHhHHHHHhcC-CcCCEEEEECCCC
Confidence 578889999777888888888642 2455666666644 7889999887743
No 187
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=28.11 E-value=1.9e+02 Score=24.87 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEE
Q 029329 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAV 72 (195)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaa 72 (195)
|.+|.+.+.+.-.++++.+||||-... ..++..-++..+.+.+||+|-.
T Consensus 85 w~~la~~I~~~~~~~~~dGvVItHGTD----------------------TmeeTA~~L~l~l~~~kPVVlT 133 (351)
T COG0252 85 WLRLAEAINEALDDGDVDGVVITHGTD----------------------TMEETAFFLSLTLNTPKPVVLT 133 (351)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCCCc----------------------hHHHHHHHHHHHhcCCCCEEEe
Confidence 456777777777777666666654211 1334444555556669997754
No 188
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.75 E-value=81 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHhcCccceecCCChHHHHHHHHHHHHhh
Q 029329 155 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 185 (195)
Q Consensus 155 ~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~ 185 (195)
+++.++| ++.|++++.-.++...+.++..+
T Consensus 106 ~~l~~~G-~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 106 KKFKEMG-FDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHcC-CCEEECcCCCHHHHHHHHHHHhc
Confidence 5788999 89999987766666666665543
No 189
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.40 E-value=1.1e+02 Score=24.44 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCC--CcEEEEECCcccchhHHHhhhCCEE
Q 029329 51 YVNTLRSTFSFLEALP--IPTIAVIDGAALGGGLEMALACDLR 91 (195)
Q Consensus 51 ~~~~~~~~~~~~~~~~--kp~Iaav~G~a~ggG~~la~~~D~~ 91 (195)
....+...+..+...+ .+.=..+-|.|+||++.+.+++...
T Consensus 92 ~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~ 134 (236)
T COG0412 92 VLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP 134 (236)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC
Confidence 3445555666666555 3333455699999999999999873
No 190
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=27.07 E-value=76 Score=25.55 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhh
Q 029329 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~ 41 (195)
+.+.+..+-.||+||.+|+.|...+..-+|.-|..+.
T Consensus 59 IEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh 95 (238)
T TIGR01111 59 IEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALH 95 (238)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHH
Confidence 4566777779999999999998666777777776654
No 191
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=25.68 E-value=82 Score=25.28 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhh
Q 029329 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (195)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~ 41 (195)
+.+.+..+-.||+||.+|+.|...+..-+|.-|..+.
T Consensus 59 IEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~ 95 (225)
T PRK00964 59 IEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALH 95 (225)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 4566777779999999999998556666677666654
No 192
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=25.67 E-value=4.5e+02 Score=22.87 Aligned_cols=65 Identities=12% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.++++.+.+||++++|++.-. .|..- . ....+.+.+..... ..+||+++...|...-.+.
T Consensus 296 e~~~~aL~~ll~Dp~VdaVlv~i~------ggi~~--------~--~~vA~~Ii~a~~~~-~~~kPvvv~l~G~~~e~~~ 358 (392)
T PRK14046 296 ERVAKAFRLVLSDRNVKAILVNIF------AGINR--------C--DWVAEGVVQAAREV-GIDVPLVVRLAGTNVEEGR 358 (392)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEcC------CCCCC--------H--HHHHHHHHHHHHhc-CCCCcEEEEcCCCCHHHHH
Confidence 467889999999999999987322 22210 0 11222333332221 2789998888775544454
Q ss_pred HH
Q 029329 83 EM 84 (195)
Q Consensus 83 ~l 84 (195)
.+
T Consensus 359 ~i 360 (392)
T PRK14046 359 KI 360 (392)
T ss_pred HH
Confidence 43
No 193
>PRK11096 ansB L-asparaginase II; Provisional
Probab=24.76 E-value=2.1e+02 Score=24.50 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEe
Q 029329 3 RGLKHAFETISEDSSANVVMIRS 25 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g 25 (195)
.+|.+.+++ ++++..++||+.
T Consensus 88 ~~l~~~i~~--~~~~~dGiVVtH 108 (347)
T PRK11096 88 LTLAKKINT--DCDKTDGFVITH 108 (347)
T ss_pred HHHHHHHHH--hcCCCCEEEEeC
Confidence 455556655 235666666664
No 194
>PLN03037 lipase class 3 family protein; Provisional
Probab=24.63 E-value=70 Score=29.06 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred CcEEEEECCcccchhHHHhhhCCEEEE
Q 029329 67 IPTIAVIDGAALGGGLEMALACDLRIC 93 (195)
Q Consensus 67 kp~Iaav~G~a~ggG~~la~~~D~~va 93 (195)
...=-.+.||.+||.+.+..+.|+..-
T Consensus 316 e~~SItVTGHSLGGALAtLaA~DIa~~ 342 (525)
T PLN03037 316 EEVSLTITGHSLGGALALLNAYEAARS 342 (525)
T ss_pred CcceEEEeccCHHHHHHHHHHHHHHHh
Confidence 344455889999999999999887543
No 195
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=24.19 E-value=1.7e+02 Score=26.58 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCCcEEEEEEeCCCCceEeccCcchhh-cCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEE
Q 029329 15 DSSANVVMIRSSVPKVFCAGADLKERR-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR 91 (195)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~ 91 (195)
.|+.-|+|-|-- .=-+=.|.+...+. ..+.+....-+..+.+-++.+..+..|+|.++|-..-----++.+..++.
T Consensus 305 ~P~a~VlVaTvR-ALK~hGG~~~~~l~~~en~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~ 381 (524)
T cd00477 305 KPDAVVLVATVR-ALKMHGGVPKVTLGLEENLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLA 381 (524)
T ss_pred CCCEEEEEEehH-HHHHhCCCCcccCCCccCHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 466555555432 11123344444443 33344444444555566667788999999999988766656665555443
No 196
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=24.09 E-value=2.5e+02 Score=19.47 Aligned_cols=50 Identities=10% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
++..++++.+. ++++.+|++|-. ..+.+++.+.+......|+|-.+-+.-
T Consensus 32 ee~~~~i~~l~-~~d~gII~Ite~------------------------~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 32 QEAINTLRKLA-MEDYGIIYITEQ------------------------IAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred HHHHHHHHHHh-cCCcEEEEEcHH------------------------HHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 35667777776 567777777542 234555666666667899999997743
No 197
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.96 E-value=3.8e+02 Score=21.48 Aligned_cols=122 Identities=14% Similarity=0.216 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh-HHHH----------------HHHHHHHHHHHHcC
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFY----------------VNTLRSTFSFLEAL 65 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~ 65 (195)
..|.+++++++++ ++.+|++-..| .|. ++.-+.. -..+.. ...+ -+.......++..+
T Consensus 74 ~~lq~~i~~le~~-G~d~illlCTG--~F~-~l~~~~~-lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l 148 (221)
T PF07302_consen 74 PRLQACIAQLEAQ-GYDVILLLCTG--EFP-GLTARNP-LLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPL 148 (221)
T ss_pred HHHHHHHHHHHHC-CCCEEEEeccC--CCC-CCCCCcc-eeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhc
Confidence 5678888889876 57777775542 243 2221110 000110 0000 12334455566666
Q ss_pred CCcEEEEECCcccch-------hHHHh-hhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329 66 PIPTIAVIDGAALGG-------GLEMA-LACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV 137 (195)
Q Consensus 66 ~kp~Iaav~G~a~gg-------G~~la-~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i 137 (195)
++++..+.--+-.|. +-.|. ..||+++ -+|-+|+..+.+.+.+..|....++|.+
T Consensus 149 ~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIv-----------------LDCmGYt~~~r~~~~~~~g~PVlLsr~l 211 (221)
T PF07302_consen 149 GNPVVVAAASPYEGDEEELAAAARELAEQGADLIV-----------------LDCMGYTQEMRDIVQRALGKPVLLSRTL 211 (221)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-----------------EECCCCCHHHHHHHHHHhCCCEEeHHHH
Confidence 666655554443332 22332 4677776 4688888889988888888888888877
Q ss_pred cHHHHHHHH
Q 029329 138 GKSVAKDII 146 (195)
Q Consensus 138 g~~~a~~l~ 146 (195)
=.+.+.|++
T Consensus 212 vAr~~~ELl 220 (221)
T PF07302_consen 212 VARLAAELL 220 (221)
T ss_pred HHHHHHHHh
Confidence 666666653
No 198
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=23.26 E-value=2.5e+02 Score=22.68 Aligned_cols=57 Identities=7% Similarity=0.153 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhc-CCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329 3 RGLKHAFETISE-DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (195)
Q Consensus 3 ~~l~~~l~~~~~-d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ 78 (195)
+.+.++++.+.+ .+++..||++|. ++...+ . +....+...+..+++|+......|-.
T Consensus 40 ~~l~~~i~~i~~~~~~~D~vvitGD----l~~~~~--------~-------~~~~~~~~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 40 ESYQAVLEAIRAQQHEFDLIVATGD----LAQDHS--------S-------EAYQHFAEGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCC----CCCCCC--------H-------HHHHHHHHHHhhcCCcEEEeCCCCCC
Confidence 457778888754 356778888874 221111 1 12333444555678898777766665
No 199
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=23.14 E-value=4.8e+02 Score=22.35 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCCcEEEEEC
Q 029329 55 LRSTFSFLEALPIPTIAVID 74 (195)
Q Consensus 55 ~~~~~~~~~~~~kp~Iaav~ 74 (195)
+.+.+.++..-.+|||.+-+
T Consensus 280 ~~~al~~a~~~GipVV~~Sr 299 (349)
T TIGR00520 280 GLKVNETAAKLGVPIVRSSR 299 (349)
T ss_pred HHHHHHHHHHCCCEEEEEcc
Confidence 34455556666888888755
No 200
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=22.99 E-value=1.5e+02 Score=27.22 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=27.5
Q ss_pred CCcEEEEECCcccch-hHHHhhhCCEEEEeCCc
Q 029329 66 PIPTIAVIDGAALGG-GLEMALACDLRICGEAA 97 (195)
Q Consensus 66 ~kp~Iaav~G~a~gg-G~~la~~~D~~va~~~a 97 (195)
..-+|+.|+|+.+-- ||.|...|+++||+|.-
T Consensus 350 g~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred cceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 355899999998765 89999999999999874
No 201
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=22.88 E-value=1.5e+02 Score=27.49 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=33.5
Q ss_pred ccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE
Q 029329 34 GADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90 (195)
Q Consensus 34 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~ 90 (195)
|.+...+...+.+....-+..+.+-++.+..+..|+|.++|-+.--.--++.+..++
T Consensus 405 G~~~~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~ 461 (625)
T PTZ00386 405 GVEPVVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKEL 461 (625)
T ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 444444333333334333444555556677899999999998876555555444433
No 202
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.63 E-value=1.6e+02 Score=22.62 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCC--CcEEEEECCcccchhHHHhhhCCE
Q 029329 52 VNTLRSTFSFLEALP--IPTIAVIDGAALGGGLEMALACDL 90 (195)
Q Consensus 52 ~~~~~~~~~~~~~~~--kp~Iaav~G~a~ggG~~la~~~D~ 90 (195)
...+...+..+...+ .+--..+-|.|+||.+.+.+++..
T Consensus 79 ~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 79 AADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 344556677777777 233445569999999998888764
No 203
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=22.42 E-value=1.5e+02 Score=27.13 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=40.6
Q ss_pred hcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE
Q 029329 13 SEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90 (195)
Q Consensus 13 ~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~ 90 (195)
.-.|+.-|+|.|-- .=-+=.|.+...+...+.+....-+..+.+-++.+..+..|+|.++|-...----++.+..++
T Consensus 319 gl~P~~~VlVaTvR-ALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~ 395 (557)
T PF01268_consen 319 GLKPDAVVLVATVR-ALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIREL 395 (557)
T ss_dssp T---SEEEEEEEHH-HHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHH
T ss_pred ccCcceEEEeeech-HHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 34577777766642 111223445555555455555555566666677788899999999998876666666665554
No 204
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=21.97 E-value=1e+02 Score=22.15 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHHHh--hcCCCcEEEEEEeC
Q 029329 2 LRGLKHAFETI--SEDSSANVVMIRSS 26 (195)
Q Consensus 2 ~~~l~~~l~~~--~~d~~v~~vvl~g~ 26 (195)
++++.+.+.+. .+.+.++.|||.|.
T Consensus 56 ~~~i~~~l~~~f~~~~~~~~~iIiaGP 82 (133)
T PF03464_consen 56 FKEIAEALKKYFLVNFDDVKCIIIAGP 82 (133)
T ss_dssp HHHHHHHHHHHCCCHTTTCSEEEEEES
T ss_pred HHHHHHHHHHHhhhccccccEEEEECC
Confidence 45677777777 66788999999886
No 205
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.88 E-value=1.4e+02 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 53 NTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
....++++......+|+++...|+-
T Consensus 68 ~~~~~~i~~~~~~~~pilgiC~G~q 92 (188)
T cd01741 68 KKLKELIRQALAAGKPVLGICLGHQ 92 (188)
T ss_pred HHHHHHHHHHHHCCCCEEEECccHH
Confidence 4455666666677899998777664
No 206
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=21.46 E-value=1.5e+02 Score=23.43 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeC
Q 029329 3 RGLKHAFETISEDSSANVVMIRSS 26 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (195)
.++.+.|..+.+++...+.|+||-
T Consensus 22 ~~~~~~L~~La~~~~~~v~IvSGR 45 (235)
T PF02358_consen 22 PELRELLRALAADPNNTVAIVSGR 45 (235)
T ss_dssp HHHHHHHHHHHHHSE--EEEE-SS
T ss_pred HHHHHHHHHHhccCCCEEEEEEeC
Confidence 456667777777776667776653
No 207
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=21.40 E-value=2.7e+02 Score=23.36 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg 80 (195)
+++.++++-+..||.+++|++.--||-.=|+-+ ...+-..++.+ .+..|.|.-++|...-.
T Consensus 322 dqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtI----------------ANGiv~A~~kl-~LnVPlVVRLEGTNV~~ 382 (412)
T KOG1447|consen 322 DQVYQAFKILTADPKVKAILVNIFGGIVNCATI----------------ANGIVKACRKL-ELNVPLVVRLEGTNVQE 382 (412)
T ss_pred HHHHHHhhhhccCCceeEEEEehhcceehhHhH----------------hhHHHHHHHhh-cCCCcEEEEEcCCCHHH
Confidence 467788999999999999998765443334322 22233333333 47899999999886644
No 208
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=21.04 E-value=3.9e+02 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEE
Q 029329 3 RGLKHAFETISEDSSANVVMI 23 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl 23 (195)
+.+.++++.+.+||++++|++
T Consensus 296 ~~~~~al~~l~~dp~vd~ilv 316 (386)
T TIGR01016 296 ERVREALKLVLSDKSVKVVFI 316 (386)
T ss_pred HHHHHHHHHHHcCCCCCEEEE
Confidence 467889999999999999986
No 209
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.83 E-value=4.7e+02 Score=21.32 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+.+.+.++.+-+ ..++++++-|+.|.+++ .+.++..+..+... ....-..|+|+-+.....--..
T Consensus 19 ~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~----------Ls~~Er~~~~~~~~----~~~~~~~~vi~gv~~~s~~~~i 83 (285)
T TIGR00674 19 AALEKLIDFQIE-NGTDAIVVVGTTGESPT----------LSHEEHKKVIEFVV----DLVNGRVPVIAGTGSNATEEAI 83 (285)
T ss_pred HHHHHHHHHHHH-cCCCEEEECccCccccc----------CCHHHHHHHHHHHH----HHhCCCCeEEEeCCCccHHHHH
Confidence 456666666654 68899888776554333 23344444333322 2234578999999877777766
Q ss_pred HHhh-----hCCEEEEeCCcee
Q 029329 83 EMAL-----ACDLRICGEAALL 99 (195)
Q Consensus 83 ~la~-----~~D~~va~~~a~~ 99 (195)
.++- .+|.++..+-.++
T Consensus 84 ~~a~~a~~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 84 SLTKFAEDVGADGFLVVTPYYN 105 (285)
T ss_pred HHHHHHHHcCCCEEEEcCCcCC
Confidence 6665 7888777654433
No 210
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=20.77 E-value=2.2e+02 Score=26.33 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEE
Q 029329 46 SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR 91 (195)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~ 91 (195)
+....-+..+.+-+..+..+..|+|.++|-..-----++.+..++.
T Consensus 381 ~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~ 426 (587)
T PRK13507 381 GLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLA 426 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 3333334445555566778999999999988765666665555444
No 211
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=20.63 E-value=2.8e+02 Score=20.87 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCC-CCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329 4 GLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (195)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a 77 (195)
.|..+|..--.+...++.+|-|.. ...++.++.+ +.++..+..+.+..+...+......+|++.-.+.
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~f------s~~dR~e~~rr~~~~A~ll~~~G~ivIva~isp~ 85 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGF------SKEDREENIRRIAEVAKLLADQGIIVIVAFISPY 85 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--S------SHHHHHHHHHHHHHHHHHHHHTTSEEEEE----S
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCC------CHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCc
Confidence 455666655556678999998752 1233443322 4556667777888888888888888888765544
No 212
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=20.51 E-value=3.9e+02 Score=23.62 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~ 82 (195)
+++.++++-+-+||.+|+|++-=-||-.-| |. ..+.+-+.+..+ ..++|+|.-+.|...--|.
T Consensus 331 ~~v~~a~~ii~~d~~vk~iliNIfGGI~~c---d~-------------iA~gii~a~~~~-~~~~pivvRl~Gtn~~~g~ 393 (422)
T PLN00124 331 QQVVEAFKILTSDDKVKAILVNIFGGIMKC---DV-------------IASGIVNAAKQV-GLKVPLVVRLEGTNVDQGK 393 (422)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCccch---HH-------------HHHHHHHHHHhc-CCCCcEEEEcCCCCHHHHH
Confidence 567889999999999999998433232223 11 112222333222 4789999999999988887
Q ss_pred HHhhh
Q 029329 83 EMALA 87 (195)
Q Consensus 83 ~la~~ 87 (195)
.+.-.
T Consensus 394 ~~l~~ 398 (422)
T PLN00124 394 RILKE 398 (422)
T ss_pred HHHHh
Confidence 77654
No 213
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=20.39 E-value=4.9e+02 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEE
Q 029329 3 RGLKHAFETISEDSSANVVMIR 24 (195)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~ 24 (195)
+.+.++|+.+.+||++.+|++.
T Consensus 296 e~~~~aL~~l~~d~~vd~vlv~ 317 (388)
T PRK00696 296 ERVAEAFKIILSDPNVKAILVN 317 (388)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE
Confidence 4577889999999999998864
No 214
>PRK06490 glutamine amidotransferase; Provisional
Probab=20.27 E-value=1.9e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEECCc
Q 029329 53 NTLRSTFSFLEALPIPTIAVIDGA 76 (195)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Iaav~G~ 76 (195)
....++++......+|+++..-|+
T Consensus 73 ~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 73 RREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhH
Confidence 344566666667899998765543
No 215
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=20.05 E-value=2.6e+02 Score=24.16 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHc---CCCcEEEEECCcccchhHHHh
Q 029329 9 FETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALGGGLEMA 85 (195)
Q Consensus 9 l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~kp~Iaav~G~a~ggG~~la 85 (195)
+.++...-+.++++.--. |=.+|.|- .....+....+..++++.. -+||.=-...|+.+|||+.=.
T Consensus 163 ~~~~ak~~~aNvl~fNYp-GVg~S~G~----------~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~ 231 (365)
T PF05677_consen 163 IQRFAKELGANVLVFNYP-GVGSSTGP----------PSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAE 231 (365)
T ss_pred HHHHHHHcCCcEEEECCC-ccccCCCC----------CCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHH
Confidence 344444455666665443 33344443 1235566777778888863 567777778899999998554
Q ss_pred hhCC
Q 029329 86 LACD 89 (195)
Q Consensus 86 ~~~D 89 (195)
...+
T Consensus 232 AL~~ 235 (365)
T PF05677_consen 232 ALKK 235 (365)
T ss_pred HHHh
Confidence 4433
Done!