Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>029330
MTTSFIVEQAPKSSILALSSDSESCKDSSLLREEKEFQFQGKEMDEDAALTGRDEKTSVK
KVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGT
IYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIF
QIVYDFDIAKTTVVL

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029330
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153939 - symbol:BIN4 "AT5G24630" species:3702...   279  4.5e-24   1


>TAIR|locus:2153939 [details] [associations]
            symbol:BIN4 "AT5G24630" species:3702 "Arabidopsis
            thaliana" [GO:0009913 "epidermal cell differentiation"
            evidence=IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009330 "DNA
            topoisomerase complex (ATP-hydrolyzing)" evidence=IPI] [GO:0010090
            "trichome morphogenesis" evidence=RCA;IMP] [GO:0030307 "positive
            regulation of cell growth" evidence=IMP] [GO:0042023 "DNA
            endoreduplication" evidence=IMP] [GO:0048364 "root development"
            evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
            [GO:0051276 "chromosome organization" evidence=RCA;IMP] [GO:0000003
            "reproduction" evidence=RCA] [GO:0000278 "mitotic cell cycle"
            evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
            [GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006325
            "chromatin organization" evidence=RCA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0007062 "sister
            chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
            evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
            evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0008284
            "positive regulation of cell proliferation" evidence=RCA]
            [GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
            [GO:0010638 "positive regulation of organelle organization"
            evidence=RCA] [GO:0033043 "regulation of organelle organization"
            evidence=RCA] [GO:0033044 "regulation of chromosome organization"
            evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
            formation" evidence=RCA] [GO:0043687 "post-translational protein
            modification" evidence=RCA] [GO:0045010 "actin nucleation"
            evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0048449 "floral organ formation"
            evidence=RCA] [GO:0048522 "positive regulation of cellular process"
            evidence=RCA] [GO:0048765 "root hair cell differentiation"
            evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030307
            GO:GO:0010090 GO:GO:0048364 GO:GO:0003690 GO:GO:0048367
            GO:GO:0051276 EMBL:AB010068 IPI:IPI00546586 RefSeq:NP_001154739.1
            UniGene:At.54981 IntAct:Q9FLU1 STRING:Q9FLU1 PaxDb:Q9FLU1
            PRIDE:Q9FLU1 EnsemblPlants:AT5G24630.6 GeneID:832534
            KEGG:ath:AT5G24630 TAIR:At5g24630 eggNOG:NOG290231
            HOGENOM:HOG000077564 InParanoid:Q9FLU1 OMA:KKARNSA PhylomeDB:Q9FLU1
            ArrayExpress:Q9FLU1 Genevestigator:Q9FLU1 GO:GO:0009330
            GO:GO:0042023 Uniprot:Q9FLU1
        Length = 454

 Score = 279 (103.3 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query:    42 KEMDEDAALTGR---DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAV 98
             K+ D D  +      D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAV
Sbjct:   247 KDTDTDTIIAEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAV 306

Query:    99 GRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKV 144
             GR++V  T  G+  M+LDLKGTIYK+T++PSRTFC+V+ G  EAK+
Sbjct:   307 GRVVVSDTT-GD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 349


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       176   0.00081  109 3  11 22  0.38    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.50u 0.09s 15.59t   Elapsed:  00:00:01
  Total cpu time:  15.50u 0.09s 15.59t   Elapsed:  00:00:01
  Start:  Mon May 20 22:07:53 2013   End:  Mon May 20 22:07:54 2013

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