BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029330
         (195 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2
          Length = 454

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 262 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 318

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 319 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 366


>sp|Q9D7X1|KCTD4_MOUSE BTB/POZ domain-containing protein KCTD4 OS=Mus musculus GN=Kctd4
           PE=2 SV=1
          Length = 259

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 19/104 (18%)

Query: 27  DSSLLREEKEFQFQGKEMDEDAALTGRDEKTSVKKVSTLTLPLVISEKLQLTK---AFVE 83
           +  ++R EKE +++G+    + A  G++ K+++  ++     L I++K  LTK    F+E
Sbjct: 2   ERKIIRREKEREYEGRHNSVEDAEQGKNCKSTLMTLNVGGY-LYITQKQTLTKYPDTFLE 60

Query: 84  CEGESIDLSGDMGAV-GRILVPGTAEGNHVMFLDLKGTIYKTTL 126
                       G V G+IL P  A+G++  F+D  G +++  L
Sbjct: 61  ------------GIVNGKILCPFDADGHY--FIDRDGLLFRHVL 90


>sp|P67172|Y3456_MYCBO UPF0079 ATP-binding protein Mb3456c OS=Mycobacterium bovis (strain
           ATCC BAA-935 / AF2122/97) GN=Mb3456c PE=3 SV=1
          Length = 168

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 13/93 (13%)

Query: 48  AALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTA 107
           A LTG    T  +   TLTL   + E+L        C G+ + LSG +GA   +L  G A
Sbjct: 14  AGLTGGGTATLPRVEDTLTLGSRLGEQL--------CAGDVVVLSGPLGAGKTVLAKGIA 65

Query: 108 EGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHP 140
                M +D++G I   T V +R       G P
Sbjct: 66  -----MAMDVEGPITSPTFVLARMHRPRRPGTP 93


>sp|P67171|Y3422_MYCTU UPF0079 ATP-binding protein Rv3422c/MT3531 OS=Mycobacterium
           tuberculosis GN=Rv3422c PE=3 SV=1
          Length = 168

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 13/93 (13%)

Query: 48  AALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTA 107
           A LTG    T  +   TLTL   + E+L        C G+ + LSG +GA   +L  G A
Sbjct: 14  AGLTGGGTATLPRVEDTLTLGSRLGEQL--------CAGDVVVLSGPLGAGKTVLAKGIA 65

Query: 108 EGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHP 140
                M +D++G I   T V +R       G P
Sbjct: 66  -----MAMDVEGPITSPTFVLARMHRPRRPGTP 93


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,555,589
Number of Sequences: 539616
Number of extensions: 2424854
Number of successful extensions: 6118
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6114
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)