Query 029330
Match_columns 195
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 18:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lc4_A PILP protein; type IV p 42.3 44 0.0015 25.4 5.1 45 126-177 47-97 (111)
2 2y4x_A PILP protein; biosynthe 37.9 63 0.0021 23.6 5.2 44 126-176 40-89 (93)
3 2ivw_A PILP pilot protein; lip 27.0 98 0.0034 23.5 4.8 52 111-177 40-93 (113)
4 2lnv_A General secretion pathw 20.6 81 0.0028 23.6 3.2 44 111-163 22-78 (104)
5 3oss_C Type 2 secretion system 16.0 1.6E+02 0.0054 20.5 3.6 40 111-162 5-57 (68)
6 4av2_M PILP protein, type IV p 13.1 1.8E+02 0.006 23.3 3.7 42 113-168 109-150 (181)
7 2iia_A Sensory rhodopsin trans 12.2 1.2E+02 0.0042 24.1 2.4 15 131-145 39-53 (131)
8 1nc7_A Hypothetical protein TM 12.0 1.4E+02 0.0047 24.0 2.7 46 89-145 15-63 (138)
9 1p5q_A FKBP52, FK506-binding p 10.2 4.4E+02 0.015 20.9 5.1 43 87-130 17-63 (336)
10 1yx2_A Aminomethyltransferase; 10.1 3E+02 0.01 22.9 4.3 21 110-130 341-361 (365)
No 1
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=42.26 E-value=44 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=30.2
Q ss_pred EecCceEEEEE----eCCCceeEEecCCCccceeccceeeEeccCc--ceeeeeccce
Q 029330 126 LVPSRTFCIVS----FGHPEAKVCCKSSPFSLILVDFPILILLLSK--SVIYIFSSSL 177 (195)
Q Consensus 126 IVPs~T~~VVs----vg~tEAKVEc~~s~f~si~~dFvqLr~~~~~--~~~~~~~~~~ 177 (195)
|.|...+..|. +|++.-||. +|..+.|.|+|..+. +..-|....|
T Consensus 47 V~~dG~vyrVk~G~ylG~n~GrI~-------~It~~~I~l~E~v~Dg~G~W~eR~~~L 97 (111)
T 2lc4_A 47 VKGAGGVHRVRVGDYLGRNDGKVV-------GISEGKIDVIEIVPDGEGNWLERPRSL 97 (111)
T ss_dssp EEETTEEEEEETTCEETTTTEEEE-------EECSSEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEeCCcEEEEccCCEeccCCCEEE-------EEeCCeEEEEEEEECCCCCEEEeeeEE
Confidence 33444444454 467889999 999999999998765 3444444433
No 2
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=37.87 E-value=63 Score=23.60 Aligned_cols=44 Identities=16% Similarity=0.022 Sum_probs=29.7
Q ss_pred EecCceEEEEE----eCCCceeEEecCCCccceeccceeeEeccCc--ceeeeeccc
Q 029330 126 LVPSRTFCIVS----FGHPEAKVCCKSSPFSLILVDFPILILLLSK--SVIYIFSSS 176 (195)
Q Consensus 126 IVPs~T~~VVs----vg~tEAKVEc~~s~f~si~~dFvqLr~~~~~--~~~~~~~~~ 176 (195)
|-|...+..|. +|++.-||. +|..|.|.|+|..+. +..-|....
T Consensus 40 V~~dg~v~~V~~G~yiG~n~G~I~-------~I~~~~I~l~E~v~Dg~G~W~eR~~~ 89 (93)
T 2y4x_A 40 VKGAGGVHRVRVGDYLGRNDGKVV-------GISEGKIDVIEIVPDGEGNWLERPRS 89 (93)
T ss_dssp EEETTEEEEECTTCEETTTTEEEE-------EEETTEEEEEEEEECSSSCEEEEEEE
T ss_pred EEeCCCEEEEccCCEeccCCCEEE-------EEeCCeEEEEEEEECCCCCEEEeeEE
Confidence 33444455554 467889999 999999999998654 444444433
No 3
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=26.96 E-value=98 Score=23.53 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred ceeEEeeeceeEeeEEecCceEEEEEeCCCceeEEecCCCccceeccceeeEeccCc--ceeeeeccce
Q 029330 111 HVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSK--SVIYIFSSSL 177 (195)
Q Consensus 111 ~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEc~~s~f~si~~dFvqLr~~~~~--~~~~~~~~~~ 177 (195)
-+|+-. .|.+|+.++ + . -+|++.-||. .|..+.|.|+|..+. +..-|....|
T Consensus 40 ~ALV~~-dG~vyrVk~--G-~----yiG~N~GrI~-------~It~~~I~l~E~v~Dg~G~W~eR~~~L 93 (113)
T 2ivw_A 40 SGFIEA-EGYVYTVGV--G-N----YLGQNYGRIE-------SITDDSIVLNELIEDSTGNWVSRKAEL 93 (113)
T ss_dssp EEEEEE-TTEEEEECS--S-E----EETTTEEEEE-------EEETTEEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEEe-CCcEEEEcc--C-C----EeccCCCEEE-------EEeCCeEEEEEEEECCCCCEEEEeeEE
Confidence 344443 666665432 1 1 3688999999 999999999998665 4444544444
No 4
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=20.58 E-value=81 Score=23.63 Aligned_cols=44 Identities=27% Similarity=0.263 Sum_probs=32.0
Q ss_pred ceeEEeeeceeEeeEEecCceEEEEEeC------------C-CceeEEecCCCccceeccceeeEe
Q 029330 111 HVMFLDLKGTIYKTTLVPSRTFCIVSFG------------H-PEAKVCCKSSPFSLILVDFPILIL 163 (195)
Q Consensus 111 ~~L~LDLKG~iY~atIVPs~T~~VVsvg------------~-tEAKVEc~~s~f~si~~dFvqLr~ 163 (195)
..|.|-|.|++|.. -|...++|+..+ + +.|+++ .|+.|.|.|+.
T Consensus 22 T~L~L~L~GVv~s~--~~~~S~AII~~~g~Q~~Y~vGd~I~g~~a~L~-------~I~~DrVII~~ 78 (104)
T 2lnv_A 22 STLNLSLTGVMAGD--DDSRSIAIISKDNEQFSRGVNEEVPGYNAKIV-------SIRPDRVVLQY 78 (104)
T ss_dssp SCCCSEEEEEECCS--SSSSCEEEEESSSCCEEECTTEECSSSCCEEE-------EEETTEEEEEE
T ss_pred CCcceEEEEEEecC--CccccEEEEEcCCeEeEEeCCCCcCCCCEEEE-------EEeCCEEEEec
Confidence 45888999999853 455566666654 2 368888 99999999854
No 5
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=15.96 E-value=1.6e+02 Score=20.46 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred ceeEEeeeceeEeeEEecCceEEEEEeC-------------CCceeEEecCCCccceeccceeeE
Q 029330 111 HVMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HPEAKVCCKSSPFSLILVDFPILI 162 (195)
Q Consensus 111 ~~L~LDLKG~iY~atIVPs~T~~VVsvg-------------~tEAKVEc~~s~f~si~~dFvqLr 162 (195)
..|.|-|.|++... ..++|+.-+ .+.|++. .|+.|-|.|+
T Consensus 5 T~L~l~L~Gvv~s~-----~s~AII~~~g~q~~Y~vGd~i~g~~a~l~-------~V~~DrVIl~ 57 (68)
T 3oss_C 5 TRLNVVLRGIAFGA-----RPGAVIEEGGKQQVYLQGERLDSHNAVIE-------EINRDHVMLR 57 (68)
T ss_dssp CCSSCEEEEEEESS-----SCEEEEEETTEEEEECTTCBCSSSSEEEE-------EECSSEEEEE
T ss_pred ccceeEEEEEEeCC-----CcEEEEecCCcEeEEECCCEeCCCCEEEE-------EEeCCEEEEe
Confidence 35778899997632 566666644 2467888 9999999884
No 6
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=13.13 E-value=1.8e+02 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=30.7
Q ss_pred eEEeeeceeEeeEEecCceEEEEEeCCCceeEEecCCCccceeccceeeEeccCcc
Q 029330 113 MFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKS 168 (195)
Q Consensus 113 L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEc~~s~f~si~~dFvqLr~~~~~~ 168 (195)
..+|-.|.+|+.++ +. -+|++.-||. .|..+.|.|+|..+.+
T Consensus 109 alv~~dg~v~~V~~--G~-----ylG~n~GrI~-------~I~~~~i~l~E~v~Dg 150 (181)
T 4av2_M 109 GFIEAEGYVYTVGV--GN-----YLGQNYGRIE-------SITDDSIVLNELIEDS 150 (181)
T ss_dssp EEEEETTEEEEECS--SE-----EETTTTEEEE-------EEETTEEEEEEEEECS
T ss_pred EEEecCCCEEEEcc--CC-----EeccCCcEEE-------EEeCCEEEEEEEeECC
Confidence 34466777776432 21 3688999999 9999999999987753
No 7
>2iia_A Sensory rhodopsin transducer protein; signaling protein; 1.80A {Anabaena SP} PDB: 2ii9_A 2ii7_A 2ii8_A
Probab=12.23 E-value=1.2e+02 Score=24.08 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=14.4
Q ss_pred eEEEEEeCCCceeEE
Q 029330 131 TFCIVSFGHPEAKVC 145 (195)
Q Consensus 131 T~~VVsvg~tEAKVE 145 (195)
++||+|.|..+|+|+
T Consensus 39 ~~CILN~gd~dA~i~ 53 (131)
T 2iia_A 39 TVCILNAGDEDAHVE 53 (131)
T ss_dssp EEEEEECSSSCEEEE
T ss_pred eEEEeecCCCCeEEE
Confidence 799999999999998
No 8
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular propeller, PSI, protein structure initiative; 1.55A {Thermotoga maritima} SCOP: b.123.1.1
Probab=12.00 E-value=1.4e+02 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=25.2
Q ss_pred ecccCCcccee--eEEecCCCCCCceeEEeeeceeEeeEEecCc-eEEEEEeCCCceeEE
Q 029330 89 IDLSGDMGAVG--RILVPGTAEGNHVMFLDLKGTIYKTTLVPSR-TFCIVSFGHPEAKVC 145 (195)
Q Consensus 89 lDLsGD~GAVG--Rl~V~~s~~~~~~L~LDLKG~iY~atIVPs~-T~~VVsvg~tEAKVE 145 (195)
-+|-|.|-.+| ||.+.++-=. .-|.=+ +.|- ++||+|.|..+|+|+
T Consensus 15 ~~l~~~~~~iG~r~W~IpdGyIP-------~~s~G~----~~SHEslCILN~gd~dA~i~ 63 (138)
T 1nc7_A 15 ENLYFQGHMNGARKWFFPDGYIP-------NGKRGY----LVSHESLCIMNTGDETAKIR 63 (138)
T ss_dssp -------CCCSEEEEEEEEECCC-------CCEETT----EECEEEEEEEECSSSCEEEE
T ss_pred hhhcccccccccEEEEecCcccC-------CCCCCC----cccceeEEEeecCCCCcEEE
Confidence 45777777887 5777542100 001101 4566 899999999999998
No 9
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=10.23 E-value=4.4e+02 Score=20.86 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=27.2
Q ss_pred ceecccCCccceeeEEecCC----CCCCceeEEeeeceeEeeEEecCc
Q 029330 87 ESIDLSGDMGAVGRILVPGT----AEGNHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 87 ~slDLsGD~GAVGRl~V~~s----~~~~~~L~LDLKG~iY~atIVPs~ 130 (195)
.-+|.++|.|.+=+++..+. |..+..+.+...|.. .+++.-+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~ 63 (336)
T 1p5q_A 17 RGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR 63 (336)
T ss_dssp -----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE
T ss_pred cceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC
Confidence 57889999999999988763 334456888888775 65655544
No 10
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=10.10 E-value=3e+02 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=16.0
Q ss_pred CceeEEeeeceeEeeEEecCc
Q 029330 110 NHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 110 ~~~L~LDLKG~iY~atIVPs~ 130 (195)
+.++.++..|..|.|+|++.|
T Consensus 341 g~~~~v~~~g~~~~a~v~~~P 361 (365)
T 1yx2_A 341 GTVVDVEIRKKLVKAKVVKTP 361 (365)
T ss_dssp TCEEEEEETTEEEEEEEECCC
T ss_pred CCEEEEEECCEEEEEEEEcCC
Confidence 345778888888888888765
Done!