Query 029330
Match_columns 195
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 18:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5va1 b.44.2.1 (A:313-401) G 36.5 24 0.0017 23.0 4.4 32 98-130 45-76 (89)
2 d1g2914 b.40.6.3 (1:302-372) M 30.0 54 0.0039 19.7 5.6 58 117-175 9-66 (71)
3 d2vzsa3 b.1.4.1 (A:675-777) Ex 29.2 72 0.0053 21.4 6.1 50 114-168 32-83 (103)
4 d1pj5a1 b.44.2.1 (A:743-830) N 27.0 55 0.004 21.0 5.0 21 110-130 57-77 (88)
5 d1vloa1 b.44.2.1 (A:278-367) G 26.9 44 0.0032 21.5 4.4 21 110-130 58-78 (90)
6 d1wosa1 b.44.2.1 (A:279-361) G 24.7 48 0.0035 20.7 4.2 23 108-130 54-76 (83)
7 d1wfja_ b.7.1.2 (A:) C2 domain 16.0 1.2E+02 0.0085 19.6 4.8 13 92-104 3-15 (136)
8 d1e3ha6 d.101.1.1 (A:483-578) 14.7 30 0.0022 24.4 1.4 37 77-118 20-56 (96)
9 d2djfa1 b.61.5.1 (A:1-118) Dip 12.4 1.5E+02 0.011 20.8 4.7 41 77-124 37-79 (118)
10 d1kt1a3 d.26.1.1 (A:139-253) F 11.8 1.5E+02 0.011 18.9 4.3 38 89-127 2-43 (115)
No 1
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=36.47 E-value=24 Score=22.98 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=22.0
Q ss_pred eeeEEecCCCCCCceeEEeeeceeEeeEEecCc
Q 029330 98 VGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 98 VGRl~V~~s~~~~~~L~LDLKG~iY~atIVPs~ 130 (195)
.|++-.+.+. .+..+.+++.|..|.|+|+..|
T Consensus 45 la~v~~~~~~-~g~~v~v~i~g~~~~a~v~~~P 76 (89)
T d1v5va1 45 IAFVKEEYAK-PGIEIEVEIRGQRKKAVTVTPP 76 (89)
T ss_dssp EEEEEGGGCS-TTCEEEEEETTEEEEEEEECSC
T ss_pred EEEECHHHcC-CCCEEEEEECCeEEEEEEECCC
Confidence 3455443322 3367889999999999998765
No 2
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=30.03 E-value=54 Score=19.72 Aligned_cols=58 Identities=9% Similarity=-0.081 Sum_probs=32.5
Q ss_pred eeceeEeeEEecCceEEEEEeCCCceeEEecCCCccceeccceeeEeccCcceeeeecc
Q 029330 117 LKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSS 175 (195)
Q Consensus 117 LKG~iY~atIVPs~T~~VVsvg~tEAKVEc~~s~f~si~~dFvqLr~~~~~~~~~~~~~ 175 (195)
++|.++..+.+=+-|++-+.+|..+-.+. ..+.+..-..|=+.|...+.+-.+|..-+
T Consensus 9 i~~~V~~vE~lG~et~v~~~~~~~~i~~~-~~~~~~~~~G~~v~l~~~~~~~hlFD~~t 66 (71)
T d1g2914 9 VRAVVEIVENLGSERIVRLRVGGVTFVGS-FRSESRVREGVEVDVVFDMKKIHIFDKTT 66 (71)
T ss_dssp EEEEEEEEEECSSCEEEEEEETTEEEEEE-ECTTCCCCTTCEEEEEECGGGCEEEETTT
T ss_pred EEEEEEEEEcccCeEEEEEEECCEEEEEE-ECCCCCCCCCCEEEEEECcccEEEEcchh
Confidence 46666666666555666666666554444 33444444556666666555555554433
No 3
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=29.16 E-value=72 Score=21.39 Aligned_cols=50 Identities=26% Similarity=0.140 Sum_probs=27.3
Q ss_pred EEeeeceeEeeEEecCceEEEEEeCCCceeEEecCCCccceecc--ceeeEeccCcc
Q 029330 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVD--FPILILLLSKS 168 (195)
Q Consensus 114 ~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEc~~s~f~si~~d--FvqLr~~~~~~ 168 (195)
.+||.|.. +-..|.-+.++..+..++.|..-|+..=..+ |++|.+..+.+
T Consensus 32 v~Dl~Gk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~FlrL~L~d~~g 83 (103)
T d2vzsa3 32 LYNLDGTE-----KYSNTKTGLSVGALGAKATAVTVPAVSGLSTTYLAKNVLTDSSG 83 (103)
T ss_dssp EEETTSCE-----EEEEEEEEEEECSTTEEEEEEECCCCSSCCSEEEEEEEEECTTC
T ss_pred EEeCCCCE-----EEEEEEEEEEcCCCceEEEEEecccccCCCceEEEEEEEECCCC
Confidence 45777753 3334555666666666666655444433334 66666554433
No 4
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=27.02 E-value=55 Score=21.01 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=18.3
Q ss_pred CceeEEeeeceeEeeEEecCc
Q 029330 110 NHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 110 ~~~L~LDLKG~iY~atIVPs~ 130 (195)
+..+++++-|..|.|+++..+
T Consensus 57 g~~~~V~~~g~~~~a~v~~~P 77 (88)
T d1pj5a1 57 GDSVDIEYFGRRITATVTEDP 77 (88)
T ss_dssp TCEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEEccC
Confidence 467999999999999999765
No 5
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=26.88 E-value=44 Score=21.46 Aligned_cols=21 Identities=0% Similarity=0.093 Sum_probs=18.2
Q ss_pred CceeEEeeeceeEeeEEecCc
Q 029330 110 NHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 110 ~~~L~LDLKG~iY~atIVPs~ 130 (195)
+..+.+++.|..|.|+|++.+
T Consensus 58 g~~~~v~v~g~~~~a~v~~~P 78 (90)
T d1vloa1 58 GETAIVQIRNREMPVKVTKPV 78 (90)
T ss_dssp CSEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEECCC
Confidence 367888999999999999877
No 6
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=24.75 E-value=48 Score=20.72 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCCceeEEeeeceeEeeEEecCc
Q 029330 108 EGNHVMFLDLKGTIYKTTLVPSR 130 (195)
Q Consensus 108 ~~~~~L~LDLKG~iY~atIVPs~ 130 (195)
.+++.+.++..|..|.|+|+..|
T Consensus 54 ~~~~~~~~~~~g~~~~a~v~~~P 76 (83)
T d1wosa1 54 IGDQLGVVFPGGKLVEALVVKKP 76 (83)
T ss_dssp TTCEEEEEETTTEEEEEEEECSC
T ss_pred CCCeEEEEEECCeEEEEEEECCC
Confidence 34456777888888899888776
No 7
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.99 E-value=1.2e+02 Score=19.60 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=9.4
Q ss_pred cCCccceeeEEec
Q 029330 92 SGDMGAVGRILVP 104 (195)
Q Consensus 92 sGD~GAVGRl~V~ 104 (195)
+|-.|.+|.|.|.
T Consensus 3 ~~~~~p~G~L~V~ 15 (136)
T d1wfja_ 3 SGSSGPHGTLEVV 15 (136)
T ss_dssp CCCCCCEEEEEEE
T ss_pred CCCCCCcEEEEEE
Confidence 5677888887763
No 8
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=14.69 E-value=30 Score=24.39 Aligned_cols=37 Identities=35% Similarity=0.337 Sum_probs=26.7
Q ss_pred cceeeeeecCceecccCCccceeeEEecCCCCCCceeEEeee
Q 029330 77 LTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLK 118 (195)
Q Consensus 77 rsK~LvE~eg~slDLsGD~GAVGRl~V~~s~~~~~~L~LDLK 118 (195)
+..+|-.+-| .=|.-|||- +-|.++.+|=-.+|||+|
T Consensus 20 ~~~iLtDI~G-~ED~~GDMD----FKVAGT~~GITa~QmDiK 56 (96)
T d1e3ha6 20 HYVALTDILG-AEDAFGDMD----FKVAGTKEFVTALQLDTK 56 (96)
T ss_dssp EEEEESSCCS-HHHHHCSEE----EEEEECSSCEEEEEEEEC
T ss_pred cEEEEeeccC-chhhccCcc----cccccCcccceeeeeeec
Confidence 3445554444 347778884 778888888889999998
No 9
>d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C), exclusion domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.38 E-value=1.5e+02 Score=20.81 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=30.0
Q ss_pred cceeeeeecCc--eecccCCccceeeEEecCCCCCCceeEEeeeceeEee
Q 029330 77 LTKAFVECEGE--SIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKT 124 (195)
Q Consensus 77 rsK~LvE~eg~--slDLsGD~GAVGRl~V~~s~~~~~~L~LDLKG~iY~a 124 (195)
++++-+.+... +.| +.|..|+|..- .+++..+.|.|.-|-|
T Consensus 37 ~~~~~v~L~~~~ia~d---~~Gn~G~WTmI----YdqGfei~i~~~~yf~ 79 (118)
T d2djfa1 37 EKKVVVYLQKLDTAYD---DLGNSGHFTII----YNQGFEIVLNDYKWFA 79 (118)
T ss_dssp EEEEEEEEETTTEEEE---TTSCEEEEEEE----TTTEEEEEETTEEEEE
T ss_pred CCeEEEEeCCCCeEEE---CCCCEEEEEEE----ecceEEEEECCeEEEE
Confidence 34555666543 333 56788999986 6899999999998865
No 10
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=11.84 E-value=1.5e+02 Score=18.88 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=26.7
Q ss_pred ecccCCccceeeEEecCC----CCCCceeEEeeeceeEeeEEe
Q 029330 89 IDLSGDMGAVGRILVPGT----AEGNHVMFLDLKGTIYKTTLV 127 (195)
Q Consensus 89 lDLsGD~GAVGRl~V~~s----~~~~~~L~LDLKG~iY~atIV 127 (195)
-|+.+|.|..=|++..+. |+....+.++..|.+ .+++.
T Consensus 2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~ 43 (115)
T d1kt1a3 2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVF 43 (115)
T ss_dssp EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEE
T ss_pred CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCccc
Confidence 388999999999998654 234456888877763 44443
Done!