BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029331
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
           Efi-500396) From Nitratiruptor Sp. Sb155-2
          Length = 427

 Score = 30.0 bits (66), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 72  AKESLLLAFK---DAGGFEA--LVAGKTTNMQQIDVNERITGLERL 112
           AKE ++ A K   DA GFE   +  GK  +MQ ID+ E +T +E L
Sbjct: 336 AKELIIRATKAGYDALGFEGGEIAVGKDADMQLIDLPEGLTNVEDL 381


>pdb|3OTN|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bdi_3964)
           From Parabacteroides Distasonis Atcc 8503 At 1.95 A
           Resolution
 pdb|3OTN|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bdi_3964)
           From Parabacteroides Distasonis Atcc 8503 At 1.95 A
           Resolution
          Length = 482

 Score = 30.0 bits (66), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 91  AGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWF 133
           A  T N Q ID+  +I G   L P  +   S FLE  W+  +F
Sbjct: 374 ADGTPNQQSIDIVNQIRGRAGLAPFKQTNASAFLEEVWDQRYF 416


>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
 pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
          Length = 555

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 57  QGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKT 94
           +G P     E +++   ESL+ ++++ GGF+ + +G+T
Sbjct: 111 KGGPLGLL-ENDKIELTESLINSYRNTGGFDIVSSGRT 147


>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
 pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
          Length = 363

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 59  APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQ 98
            P     ++ERLSA+ES     +  GG E  VA + T ++
Sbjct: 224 CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVE 263


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,442,826
Number of Sequences: 62578
Number of extensions: 209655
Number of successful extensions: 409
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 4
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)