BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029331
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9M1|PAP13_ARATH Probable plastid-lipid-associated protein 13, chloroplastic
OS=Arabidopsis thaliana GN=PAP13 PE=1 SV=2
Length = 299
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 134/183 (73%), Gaps = 1/183 (0%)
Query: 1 MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAP 60
MA + S+P SA+ F S+S + + RRR+ +AMVQ+ VQG+P
Sbjct: 1 MALIHGSVPGTSAVRLVFSTSASPSRFCLNVPVVKQGWKNSCRRRV-LRAMVQETVQGSP 59
Query: 61 AAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120
YA+EMERLSAKESLLLA KDAGGFEALV GKTTNMQ+IDVNERIT LERLNPTPRPTT
Sbjct: 60 LVYAREMERLSAKESLLLALKDAGGFEALVTGKTTNMQRIDVNERITSLERLNPTPRPTT 119
Query: 121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNS 180
SP EGRWNFEWFGSGSPG AR IFERFP TLANLS M+++IKD A TAN KLLNS
Sbjct: 120 SPCFEGRWNFEWFGSGSPGLLAARVIFERFPSTLANLSRMEILIKDANAKATANIKLLNS 179
Query: 181 VLS 183
+ S
Sbjct: 180 IES 182
>sp|Q9M2P7|PAP9_ARATH Probable plastid-lipid-associated protein 9, chloroplastic
OS=Arabidopsis thaliana GN=PAP9 PE=1 SV=1
Length = 308
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 114/138 (82%)
Query: 44 RRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVN 103
RR+ C+AMVQ +VQG P+ YA+EMERLSAKESL+LAF DAGGFEALV GK T+MQ+IDVN
Sbjct: 48 RRMICRAMVQDSVQGIPSVYAREMERLSAKESLILAFNDAGGFEALVTGKITDMQKIDVN 107
Query: 104 ERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVV 163
ERIT LERLNPTPRPTTSP+LEGRW+FEWFG +PG R +FERFP TL +LSNM++
Sbjct: 108 ERITNLERLNPTPRPTTSPYLEGRWSFEWFGVNTPGSLAVRVMFERFPSTLVSLSNMEIF 167
Query: 164 IKDGKANITANFKLLNSV 181
IKD TAN KLLNS+
Sbjct: 168 IKDNNTKATANIKLLNSI 185
>sp|P27748|ACOX_CUPNH Acetoin catabolism protein X OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=acoX PE=4 SV=2
Length = 359
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 139 GFFVARFIFERFPPTLANLSN--MDVVIKDGKANITANFKLLNSVLSLDEF 187
G + R PP A SN +D+VI+DG + L+++V+S + F
Sbjct: 162 GLATGLYATGRIPPAQALASNKRLDIVIRDGNGGFRRDIALVDAVISHEHF 212
>sp|Q7XCJ7|P2C72_ORYSJ Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica
GN=Os10g0544900 PE=2 SV=1
Length = 393
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 59 APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRP 118
+PA ++ + ++ LL +KDAG LVAG+ + M + N + ++ P
Sbjct: 18 SPAGRPRKGSDAAGRQDGLLWYKDAG---QLVAGEFS-MAVVQANNLLEDHSQVESGPLS 73
Query: 119 TTSPFLEGRWNFEWFGSGSPGFFVARFIFERF 150
TT P L+G + G G P AR+I +
Sbjct: 74 TTDPNLQGTLVGVYDGHGGPE--TARYINDHL 103
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 43 RRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDA--GGFEALVAGKTTNMQQI 100
RR + +A + A A + +E + E L + D+ G L A T +
Sbjct: 53 RRVFKVRATDTGEIGSALLAAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSETRAE-- 110
Query: 101 DVNERITGLERLNPTPRPTTSPF-LEGRWNFEW 132
+ + IT LE NPTP PT + F L G+W +
Sbjct: 111 -IGDLITQLESKNPTPAPTEALFLLNGKWILAY 142
>sp|P89102|SEC5_YEAST Exocyst complex component SEC5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC5 PE=1 SV=1
Length = 971
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 141 FVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVL 182
F+AR++FE F P + NLSN DG I + + V+
Sbjct: 883 FIARYLFEAFKPYVGNLSN------DGSLQIIVDLEFFQKVM 918
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 43 RRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQ-QID 101
R RLR QA+ P A+ R ++ L +A E L G T + Q+
Sbjct: 46 RERLRV-----QAIFSFPPAFLTRNGRAEKQKQLKQELLEA--IEPLERGATASPDDQLR 98
Query: 102 VNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGS 137
+++ +E +NPT P S + G+W + S S
Sbjct: 99 IDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSAS 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,349,777
Number of Sequences: 539616
Number of extensions: 2775287
Number of successful extensions: 6738
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6726
Number of HSP's gapped (non-prelim): 25
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)