BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029332
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
          Length = 328

 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 116 NAPDLYIPFMAFGTYVVLAGFTLGLQGK---FTPEALNWLFIKG-LFGWFMQFMLLKVTL 171
           N   + I    +G Y+   G   G++ K   FT   +N   ++    GW++  +L     
Sbjct: 138 NTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEA 197

Query: 172 LSLGSGEAPLLDVVAYAGE 190
            + G  EA LLDV  Y  E
Sbjct: 198 TADGYDEALLLDVDGYVSE 216


>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
           Complex With Amp-Pnp
 pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
           Complex With Amp-Pnp
 pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
           Complex With Phosphate
 pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
           Complex With Phosphate
          Length = 511

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 97  RITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALN 150
           R+T+  G  +S   PI D   PD       FGT V   G +  ++ KFT E L 
Sbjct: 183 RLTQRSGKHISIANPIVDATLPDGSRLQATFGTEVTPRGSSFTIR-KFTIEPLT 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,945,298
Number of Sequences: 62578
Number of extensions: 228118
Number of successful extensions: 314
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 3
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)