BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029332
         (195 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
          Length = 300

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKY 216


>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
          Length = 300

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFVTYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA+ G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFTGYKY 216


>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1
          Length = 300

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKY 216


>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1
          Length = 314

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 33/200 (16%)

Query: 6   GTQPGPG-MPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYF 64
           G Q  PG +  PAA   P P         S +      AYG  +     E V  NI R+ 
Sbjct: 51  GAQRAPGGLSYPAA--SPTPHAAFLADPVSNMAM----AYGSSLAAQGKELVDKNIDRFI 104

Query: 65  --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 120
             +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDL
Sbjct: 105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLL 172
           YIP MAF TYV++AG  LG Q +F+P+        AL WL ++ L       +LL + L+
Sbjct: 158 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVL------AILLSLYLV 211

Query: 173 SLGSGEAPLLDVVAYAGESY 192
           ++ + +   +D+VA+ G  Y
Sbjct: 212 TVNT-DLTTIDLVAFLGYKY 230


>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2
          Length = 304

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 28/163 (17%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWT---R 97
           AYG  +     E +  N+ R+   S  +YYF V+  YV  KL +++FP++H  +W    +
Sbjct: 73  AYGSSLASHGKEMMDKNLDRFIPISKLKYYFAVDTVYVGKKLGLLVFPYMH-DNWEVNYQ 131

Query: 98  ITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------AL 149
              PV        P +DINAPDLYIP M F TYV++AG  LG Q +F+PE        AL
Sbjct: 132 QDTPVA-------PRFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSAL 184

Query: 150 NWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
            WL I+ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 185 VWLIIEVL------AVLLSLYLVTVNT-DLTTIDLVAFSGYKY 220


>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2
          Length = 311

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 26/161 (16%)

Query: 44  YGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE- 100
           YG  +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  + 
Sbjct: 81  YGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQD 140

Query: 101 -PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNW 151
            PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+P+        AL W
Sbjct: 141 TPVAPR-------FDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAW 193

Query: 152 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           L ++      +  +LL + L+++ + +   +D+VA+ G  Y
Sbjct: 194 LTLE------VVAILLSLYLVTVNT-DLTTIDLVAFLGYKY 227


>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1
          Length = 293

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 14/189 (7%)

Query: 7   TQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFS- 65
           +QPG G P P AD       N  +  G  +    + AYG  I     + +   + R+ S 
Sbjct: 35  SQPG-GYPAPGADVA----FNVNHLLGDPMANMAM-AYGSSIASHGKDMMNKELHRFVSV 88

Query: 66  -DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF 124
              +Y+F V+  YV  KL +++FP+ H+    + +  V       PP  D+NAPDLYIP 
Sbjct: 89  NKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVP-----LPPRQDLNAPDLYIPT 143

Query: 125 MAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL-LSLGSGEAPLLD 183
           MAF TYV+LAG  LG+Q +F+PE L       L    M+ + L + + L+    +     
Sbjct: 144 MAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDLSTFH 203

Query: 184 VVAYAGESY 192
           ++AY+G  Y
Sbjct: 204 LLAYSGYKY 212


>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1
          Length = 293

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 43  AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  I     + V   + R+ S    +Y+F V+  YV  KL +++FP+ H+    + + 
Sbjct: 65  AYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKMQYSH 124

Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 160
            V       PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L       L   
Sbjct: 125 DVP-----LPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWV 179

Query: 161 FMQ 163
           FM+
Sbjct: 180 FME 182


>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1
          Length = 307

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 22/193 (11%)

Query: 4   NMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRY 63
           NM   P  G      +   +P  NA    GS L   G             + V   I+R+
Sbjct: 48  NMAEMPAGGQEPGVGNIFADPMANAAMMYGSTLANQG------------KDIVNKEINRF 95

Query: 64  FS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLY 121
            S    +Y+F V+ +YV  KL +++FP+ H+    R       R +   P +D+NAPDLY
Sbjct: 96  MSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRY-----HRDTPLTPRHDVNAPDLY 150

Query: 122 IPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPL 181
           IP MAF TY++LAG  LG+Q +F+PE L       L  W +  +L+ +  L L +    L
Sbjct: 151 IPTMAFITYILLAGMALGIQKRFSPEVLGLCASTALV-WMIIEVLVMLLSLYLLTVHTDL 209

Query: 182 --LDVVAYAGESY 192
              D+VAY+G  Y
Sbjct: 210 STFDLVAYSGYKY 222


>sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2
          Length = 293

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 43  AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  I     + V   + R+ S    +Y+F V+  YV  KL +++FP+ H+ +W    E
Sbjct: 65  AYGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ-NW----E 119

Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEAL 149
               R +  PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L
Sbjct: 120 VQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVL 168


>sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=hrf1 PE=3 SV=1
          Length = 293

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 45  GEKILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRI---T 99
           G+  + +  EYV+ N  ++ S  +  +YF V + YV  KL +++FP+  R  W R    +
Sbjct: 61  GKNAVNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLLLIIFPWRRRS-WARKLRRS 119

Query: 100 EPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFG 159
           E  G    Y PP  D+N+PD+YIP MAF T+++L     GLQ  F PE       K    
Sbjct: 120 EINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQDDFQPELFGLRASKACAV 179

Query: 160 WFMQFMLLKVTLLSLG-SGEAPLLDVVAYAG 189
             ++F+  ++    L  S ++ +LD++A++G
Sbjct: 180 VLVEFLATRLGCYLLNISSQSQVLDLLAFSG 210


>sp|Q6PEC3|YIF1B_RAT Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2
          Length = 259

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  +
Sbjct: 80  AYGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQ 139

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLF 158
             PV        P +DINAPDLYIP MAF TY+++AG  LG Q +     L  L    LF
Sbjct: 140 DTPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDRMIGGVLTGL----LF 188

Query: 159 GWFMQFMLLKVTLLSL 174
           G    +++L    +S+
Sbjct: 189 GKIGYYLVLAWCCVSI 204


>sp|P53845|YIF1_YEAST Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1
          Length = 314

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 70  YFQVNDQYVRNKLKVVLFPFLH-RGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFG 128
           YFQV+ +YV NKLK++L PFL+   +W RI +      ++ PP  D+N+PD+Y+P M   
Sbjct: 107 YFQVSTRYVINKLKLILVPFLNGTKNWQRIMDSG----NFLPPRDDVNSPDMYMPIMGLV 162

Query: 129 TYVVLAGFTLGLQGKFTPEAL 149
           TY+++     GL+G F PE L
Sbjct: 163 TYILIWNTQQGLKGSFNPEDL 183


>sp|Q89AI9|Y296_BUCBP Uncharacterized metalloprotease bbp_296 OS=Buchnera aphidicola
           subsp. Baizongia pistaciae (strain Bp) GN=bbp_296 PE=3
           SV=1
          Length = 376

 Score = 33.1 bits (74), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 87  FPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF-MAFGTYVVLAGFTLGLQGKFT 145
           FPFL +   +    P   R +   PI   N+P   I F M  GT ++  G  + L  KF+
Sbjct: 224 FPFLKKYRISSKFNP--NRFN---PITKKNSPHQGIDFAMPIGTPILSIGDGVILNAKFS 278

Query: 146 PEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGES 191
            +A N++ I+    +  ++M LK  L+ +G  +  + D +  +G +
Sbjct: 279 IQAGNYITIQHNCSYITKYMHLKKILVKIG-DKVKMRDKIGLSGNT 323


>sp|Q4L6G9|AROB_STAHJ 3-dehydroquinate synthase OS=Staphylococcus haemolyticus (strain
           JCSC1435) GN=aroB PE=3 SV=1
          Length = 354

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 58  SNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLS 107
             +S Y  D    F + D+YV    K    PFL   H  +I  P G ++ 
Sbjct: 22  EELSEYIQDYDKVFLIIDEYVDFNFKTKFMPFLESTHIYKIIVPAGEKMK 71


>sp|Q75AV6|RTC1_ASHGO Restriction of telomere capping protein 1 OS=Ashbya gossypii
          (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
          Y-1056) GN=RTC1 PE=3 SV=2
          Length = 1361

 Score = 30.8 bits (68), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  YSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLG---AYGEKILGSSSEYVQS 58
          + N  T P   M + +   +P PF    YG+ S    GG+G   A   K  GS    + S
Sbjct: 12 FLNRKTPPTADMQQGSGGTRPQPFSRFTYGSKSAQSSGGMGGQVACSPKGRGSQRSLLSS 71

Query: 59 N 59
          N
Sbjct: 72 N 72


>sp|P08953|TOLL_DROME Protein toll OS=Drosophila melanogaster GN=Tl PE=1 SV=1
          Length = 1097

 Score = 30.8 bits (68), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 132 VLAGFTLGLQGKFTPEALNWLFIKGLFGWFM 162
           +LAGFT  L  KF  E   WL+   L  WF+
Sbjct: 818 LLAGFTAALYYKFQTEIKIWLYAHNLLLWFV 848


>sp|Q8BU33|ILVBL_MOUSE Acetolactate synthase-like protein OS=Mus musculus GN=Ilvbl PE=2
           SV=1
          Length = 632

 Score = 30.4 bits (67), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 126 AFGTYVVLAGFTLGLQGKFTPEALNW-LFIKGLFGW----FMQFMLLKVTLLSLGSGEA 179
           AFGT  V AGF LG +    PEA  W LF  G FG+    F  F+  KV +++L   +A
Sbjct: 492 AFGTLGVGAGFALGAK-LCQPEAEVWCLFGDGAFGYSLIEFDTFVRHKVPVIALVGNDA 549


>sp|Q66613|GB_EHV2 Envelope glycoprotein B OS=Equine herpesvirus 2 (strain 86/87) GN=8
           PE=3 SV=1
          Length = 874

 Score = 30.4 bits (67), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 33  GSGLIRGGLGAYGEKILGSSS-EYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLH 91
           GS L  G LG   E +L +S  E  Q +   YF      ++  D Y  + L +   P LH
Sbjct: 559 GSELFAGQLGPRNEIVLSTSQVEVCQHSCEHYFQAGNQMYKYKDYYYVSTLNLTDIPTLH 618


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.142    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,268,906
Number of Sequences: 539616
Number of extensions: 3727046
Number of successful extensions: 8560
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8529
Number of HSP's gapped (non-prelim): 24
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)