Query 029332
Match_columns 195
No_of_seqs 127 out of 213
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3094 Predicted membrane pro 100.0 7.9E-68 1.7E-72 461.9 14.1 186 2-194 12-209 (284)
2 PF03878 YIF1: YIF1; InterPro 100.0 3.8E-63 8.2E-68 429.0 13.5 149 41-194 11-162 (240)
3 COG5197 Predicted membrane pro 100.0 4.9E-49 1.1E-53 339.4 10.6 147 43-194 57-206 (284)
4 KOG3114 Uncharacterized conser 98.6 1.9E-07 4.2E-12 83.8 8.2 66 54-138 66-133 (290)
5 PF04893 Yip1: Yip1 domain; I 89.6 0.66 1.4E-05 35.8 4.6 79 114-193 18-109 (172)
6 COG5080 YIP1 Rab GTPase intera 74.0 3.2 7E-05 36.6 3.0 86 78-192 72-157 (227)
7 KOG3103 Rab GTPase interacting 69.8 2.6 5.7E-05 37.7 1.6 92 72-192 89-180 (249)
8 KOG2946 Uncharacterized conser 68.7 13 0.00029 33.0 5.7 94 74-191 70-163 (234)
9 KOG3472 Predicted small membra 56.8 8 0.00017 30.8 2.0 54 33-96 12-66 (112)
10 PF05512 AWPM-19: AWPM-19-like 48.4 50 0.0011 27.4 5.4 53 123-175 49-109 (142)
11 KOG2675 Adenylate cyclase-asso 41.6 28 0.0006 33.9 3.3 16 10-25 233-248 (480)
12 PF12129 Phtf-FEM1B_bdg: Male 38.3 12 0.00026 31.5 0.4 54 41-97 14-91 (159)
13 KOG1924 RhoA GTPase effector D 33.2 34 0.00073 35.9 2.6 6 79-84 659-664 (1102)
14 CHL00105 psaJ photosystem I su 31.6 42 0.0009 22.5 2.0 27 123-150 12-38 (42)
15 PRK02733 photosystem I reactio 31.1 43 0.00094 22.4 2.0 27 123-150 12-38 (42)
16 PRK08382 putative monovalent c 30.7 1.1E+02 0.0024 26.4 5.0 30 127-156 36-65 (201)
17 PF15071 TMEM220: Transmembran 22.3 3.1E+02 0.0068 21.0 5.7 39 114-155 9-47 (104)
18 PRK08965 putative monovalent c 21.3 2.3E+02 0.0051 23.1 5.1 25 127-151 9-33 (162)
No 1
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.9e-68 Score=461.91 Aligned_cols=186 Identities=51% Similarity=0.883 Sum_probs=173.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhHH---------HHHHHHHhhhhHHHHhhhhhhcC--CCcce
Q 029332 2 YSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLG---------AYGEKILGSSSEYVQSNISRYFS--DPQYY 70 (195)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~yG~~~~~~g~~yvq~n~~~y~s--~lkyY 70 (195)
+++.+++ +++++|+-+|.+.|+|++..|.|+++.+.+++ +|||+++++|+|||++|++||++ +||||
T Consensus 12 ~~~~~p~--a~~p~p~~dp~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~yY 89 (284)
T KOG3094|consen 12 PNHAGPA--APMPVPQFDPTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLKYY 89 (284)
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEE
Confidence 3444544 56777776788899999999999999999988 99999999999999999999997 78999
Q ss_pred eeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhH
Q 029332 71 FQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALN 150 (195)
Q Consensus 71 F~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg 150 (195)
|+|||+||.|||++|+|||+||+ |+|+.|. +.++|||+|+||||||||+|||+|||||+|+.+|++|+||||.||
T Consensus 90 F~Vdn~YV~~KL~lilfPf~hk~-W~~~~~~----~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg 164 (284)
T KOG3094|consen 90 FAVDNAYVGKKLKLILFPFLHKD-WTRIYER----ESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALG 164 (284)
T ss_pred EEechHHHhhhheEEEeeecCcc-hhhhhcc----cCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHH
Confidence 99999999999999999999995 9999883 469999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCCChhhheeeccccccc
Q 029332 151 WLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESYSQ 194 (195)
Q Consensus 151 ~~as~al~~~~lEv~i~k~~~Y~l~-~~~~~~lDLvAy~GYKyV~ 194 (195)
+++|++++||++|++++|+++|+++ ++++++||++||+|||||+
T Consensus 165 ~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~ 209 (284)
T KOG3094|consen 165 ILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVG 209 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHH
Confidence 9999999999999999999999999 5899999999999999985
No 2
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=100.00 E-value=3.8e-63 Score=429.01 Aligned_cols=149 Identities=48% Similarity=0.899 Sum_probs=143.2
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCC
Q 029332 41 LGAYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 118 (195)
Q Consensus 41 ~~~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAP 118 (195)
++||||+++++|+||||||++||++ ++||||||||+||+|||++|+|||+|| +|+|..+ +++++|||+|+|||
T Consensus 11 ~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k-~W~r~~~----~~~~~~Pr~DvNAP 85 (240)
T PF03878_consen 11 AMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHK-DWSRKYE----QESYLPPREDVNAP 85 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccC-Ccccccc----ccCCCCchhhccCc
Confidence 4699999999999999999999997 799999999999999999999999999 6999877 34699999999999
Q ss_pred ccccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCChhhheeeccccccc
Q 029332 119 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGS-GEAPLLDVVAYAGESYSQ 194 (195)
Q Consensus 119 DLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~i~k~~~Y~l~~-~~~~~lDLvAy~GYKyV~ 194 (195)
|||||+||++||||++|+.+|++|+||||.||.++|+|++||++|++++|+++|+++. ++++++||+||||||||+
T Consensus 86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ 162 (240)
T PF03878_consen 86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVG 162 (240)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999994 899999999999999985
No 3
>COG5197 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.9e-49 Score=339.37 Aligned_cols=147 Identities=35% Similarity=0.654 Sum_probs=138.8
Q ss_pred HHHHHHHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCcc
Q 029332 43 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120 (195)
Q Consensus 43 ~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDL 120 (195)
..||.++++++|||++++++..+ .+++||+|||+||.+||+||||||++| +|+|+-+.. .|+|||+|+|+|||
T Consensus 57 ~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk-~W~r~gd~e----g~~pp~~d~nsPdm 131 (284)
T COG5197 57 FIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDSE----GFLPPRDDVNSPDM 131 (284)
T ss_pred HHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccc-hhhhccCCC----CCCCchhhcCCccc
Confidence 47999999999999999999997 899999999999999999999999999 799964443 59999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCChhhheeeccccccc
Q 029332 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESYSQ 194 (195)
Q Consensus 121 YIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~i~k~~~Y~l~-~~~~~~lDLvAy~GYKyV~ 194 (195)
|||+|+|+|||||++..+|++|.|+||.||+.+|++++..++|+++.|++||+|. +...++||++||+|||||.
T Consensus 132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~ 206 (284)
T COG5197 132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVP 206 (284)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHH
Confidence 9999999999999999999999999999999999999999999999999999999 5566799999999999984
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.9e-07 Score=83.76 Aligned_cols=66 Identities=29% Similarity=0.522 Sum_probs=49.1
Q ss_pred HHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHH
Q 029332 54 EYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYV 131 (195)
Q Consensus 54 ~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYI 131 (195)
+.++..+ +|+. -.|.|||||++-|++||+-.++| ++ -. .++. -+.||||-|+|...|-|
T Consensus 66 qq~~~~~-~~~ti~yyq~fFdVDt~qV~~Rl~~SliP--~~--~~--~~~~------------~~~PDLYGPfWI~~TlV 126 (290)
T KOG3114|consen 66 QQVSDQL-SFFTIEYYQPFFDVDTAQVRKRLKESLIP--RN--YV--RDQI------------QDNPDLYGPFWITATLV 126 (290)
T ss_pred ccccCCc-ccccHHhhccccCCCHHHHHHHHHHhcCC--cc--cc--cccc------------CCCccccccHHHHHHHH
Confidence 3333333 3554 78999999999999999999999 22 11 2332 37899999999999998
Q ss_pred HHHHHHh
Q 029332 132 VLAGFTL 138 (195)
Q Consensus 132 LL~g~~~ 138 (195)
-+.+...
T Consensus 127 f~l~~~g 133 (290)
T KOG3114|consen 127 FALAISG 133 (290)
T ss_pred HHHHHcc
Confidence 8776653
No 5
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=89.58 E-value=0.66 Score=35.81 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCCCCccccchHHHHHHHHHHHHHhhhcCCCChh---------hh-HHHHHHH---HHHHHHHHHHHHHHHHHhCCCCCC
Q 029332 114 DINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE---------AL-NWLFIKG---LFGWFMQFMLLKVTLLSLGSGEAP 180 (195)
Q Consensus 114 DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE---------~L-g~~as~a---l~~~~lEv~i~k~~~Y~l~~~~~~ 180 (195)
+.+.+|+|.+++++++.+............+.++ .. +...... ++.+++=..+++..+.+++ ++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~ 96 (172)
T PF04893_consen 18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS 96 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 4578999999999999998887775555444443 11 1111111 2334445555555555565 6788
Q ss_pred hhhheeecccccc
Q 029332 181 LLDVVAYAGESYS 193 (195)
Q Consensus 181 ~lDLvAy~GYKyV 193 (195)
.-|.++..||.++
T Consensus 97 ~~~~~~~~~ya~~ 109 (172)
T PF04893_consen 97 FKETFSVVGYALI 109 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887653
No 6
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=74.01 E-value=3.2 Score=36.59 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=57.0
Q ss_pred HHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHH
Q 029332 78 VRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGL 157 (195)
Q Consensus 78 V~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~al 157 (195)
+++|....+-|+.||. -+ -++.-||--|+. |++|-++.+-+++| -.+|...
T Consensus 72 i~~ks~~vl~p~~~~~------~~------------i~~d~DL~gPli----F~lL~sLfLsla~~---shFgyiy---- 122 (227)
T COG5080 72 IKSKSDDVLGPFDNKA------FD------------ILADCDLWGPLI----FILLYSLFLSLAGK---SHFGYIY---- 122 (227)
T ss_pred cccccceeeecccccc------hh------------hhhcccccccHH----HHHHHHHHHHhccc---ceeehhh----
Confidence 5678888999997772 11 145678988965 56666666667776 2233332
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCChhhheeeccccc
Q 029332 158 FGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192 (195)
Q Consensus 158 ~~~~lEv~i~k~~~Y~l~~~~~~~lDLvAy~GYKy 192 (195)
+...+-.+.+.+.+-+++...++++.-+|-.||.+
T Consensus 123 ~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~ 157 (227)
T COG5080 123 GISLFGTLSLHLLLRLLGHKNISFFSTISILGYSL 157 (227)
T ss_pred HHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhH
Confidence 33334444555666667777899999999999976
No 7
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.83 E-value=2.6 Score=37.66 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=59.9
Q ss_pred eeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhHH
Q 029332 72 QVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNW 151 (195)
Q Consensus 72 ~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~ 151 (195)
.+|-.-+.+|-+.+|-|+.+.+ -. -.+.+||=-|+..+ |+.|..+=++||-|=
T Consensus 89 gInf~hI~~KT~~VLnP~r~~~------q~------------i~~d~DlaGPlvf~----L~f~~flLl~gKi~F----- 141 (249)
T KOG3103|consen 89 GINFDHIKQKTRAVLNPFRSAD------QS------------IMKDTDLAGPLVFC----LLFGLFLLLAGKIHF----- 141 (249)
T ss_pred CCCHHHHHHHHhheecccccCc------eE------------EecCcccccchHHH----HHHHHHHHhcCceEE-----
Confidence 4677889999999999998874 11 15778999997644 455555555665331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhheeeccccc
Q 029332 152 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192 (195)
Q Consensus 152 ~as~al~~~~lEv~i~k~~~Y~l~~~~~~~lDLvAy~GYKy 192 (195)
+....||++-.+-+-..+-+|+.+++++....+-.||.+
T Consensus 142 --gyIygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcL 180 (249)
T KOG3103|consen 142 --GYIYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCL 180 (249)
T ss_pred --EEEeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHH
Confidence 122345555555555555556566777777777777754
No 8
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.73 E-value=13 Score=33.00 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=57.7
Q ss_pred ChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhHHHH
Q 029332 74 NDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLF 153 (195)
Q Consensus 74 dnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~a 153 (195)
|=.=|..||+.+++|--.. |+.+. -+..=||.-|+-..+-.-++..+..+.... ..+
T Consensus 70 D~~~I~~kl~~Vl~P~py~-------~dk~~---------~lRDwDlWGPl~~~~~la~iL~~s~~~~~~-------~vF 126 (234)
T KOG2946|consen 70 DLRAIGSKLKHVLYPHPYF-------EDKGQ---------LLRDWDLWGPLFFCVFLALILSLSGSVKSA-------SVF 126 (234)
T ss_pred HHHHHHhceEEEEccCCCc-------ccccc---------eeecccccchhHHHHHHHHHHHhhcCcccc-------hhH
Confidence 4455778999999997432 11110 122238999976544433333333333333 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCChhhheeecccc
Q 029332 154 IKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGES 191 (195)
Q Consensus 154 s~al~~~~lEv~i~k~~~Y~l~~~~~~~lDLvAy~GYK 191 (195)
+..+++|.+-.+++.+-.-+|+ +++++.--+|-.||-
T Consensus 127 s~vf~i~wfG~~vvtln~kLLG-gnIs~fQsl~IlGYC 163 (234)
T KOG2946|consen 127 AVVFAILWFGAVVVTLNIKLLG-GNISFFQSLCILGYC 163 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CceeEEeehhhhhhc
Confidence 6777777777777777777787 578887777777774
No 9
>KOG3472 consensus Predicted small membrane protein [Function unknown]
Probab=56.85 E-value=8 Score=30.78 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=40.6
Q ss_pred cchhhhhhHHHHHHHHHhhhhHHHHhhhhhhcCCCcceeeeChHH-HHHHHhhhhccccccCCce
Q 029332 33 GSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQY-VRNKLKVVLFPFLHRGHWT 96 (195)
Q Consensus 33 ~~~~~~~g~~~yG~~~~~~g~~yvq~n~~~y~s~lkyYF~VdnsY-V~~KL~llLFPf~hk~~W~ 96 (195)
=||.+.-|+|+||...+.+-+++=++ -.||+-|.| ..+-|.++-.|-.||..|+
T Consensus 12 lsGa~AlglgaYgahvlk~~pd~~~~----------~~~dtA~~yh~~HSlAlma~P~~~~p~~t 66 (112)
T KOG3472|consen 12 LSGAAALGLGAYGAHVLKDVPDPKEL----------KSWDTANRYHFLHSLALMAVPVARKPLWT 66 (112)
T ss_pred HhhHHHHhhhhhhhhhhhcCCCHHHH----------HHHHHHHHHHHHHHHHHHcCccccCcchh
Confidence 35667778999999888766655442 256777777 4678899999999998787
No 10
>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].
Probab=48.39 E-value=50 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHH------hhhcC--CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029332 123 PFMAFGTYVVLAGFT------LGLQG--KFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG 175 (195)
Q Consensus 123 PlMa~vTYILL~g~~------~G~~g--~FsPE~Lg~~as~al~~~~lEv~i~k~~~Y~l~ 175 (195)
.+--|++|.|++|++ .|++. ..++|-|...++.+++.|.+-.+.+-++|-=+.
T Consensus 49 AT~ffv~faLlAgVVG~aS~l~G~~h~r~W~~~sLaaAaa~a~iAW~lTlLAmGlACKeI~ 109 (142)
T PF05512_consen 49 ATGFFVIFALLAGVVGAASVLAGLHHVRSWRSESLAAAAASALIAWALTLLAMGLACKEIH 109 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhHheee
Confidence 466788999988765 34443 488999999999999999999999888887554
No 11
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=41.56 E-value=28 Score=33.87 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 029332 10 GPGMPRPAADAQPNPF 25 (195)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (195)
|++++.||++|+|+||
T Consensus 233 ~g~PPPPPP~PPp~~~ 248 (480)
T KOG2675|consen 233 PGAPPPPPPAPPPAPF 248 (480)
T ss_pred CCCCCCCCCCCCCccc
Confidence 3444455555666776
No 12
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=38.32 E-value=12 Score=31.50 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhc------CCCcc-eeeeC---------------hHHHHHH--HhhhhccccccCCce
Q 029332 41 LGAYGEKILGSSSEYVQSNISRYF------SDPQY-YFQVN---------------DQYVRNK--LKVVLFPFLHRGHWT 96 (195)
Q Consensus 41 ~~~yG~~~~~~g~~yvq~n~~~y~------s~lky-YF~Vd---------------nsYV~~K--L~llLFPf~hk~~W~ 96 (195)
.|+|.|+.++.+=|. +.+..+- ..+|. .=||| -..|.+| ++.++|||..+ +|.
T Consensus 14 ig~YD~q~WEksveq--~~l~gl~~~~kk~~~lk~dLIDvDLVRGStF~KAKP~~~~~~l~~kgl~R~lf~P~~~~-WW~ 90 (159)
T PF12129_consen 14 IGAYDQQIWEKSVEQ--RELKGLTNKPKKTGHLKPDLIDVDLVRGSTFPKAKPESPWTSLTRKGLVRVLFFPFFSQ-WWI 90 (159)
T ss_pred HhhhHHHHHHHHHHH--HHhcccccCCcccCCCChhheeeeeeeeecccccCCcchhhHHHHHHHHHHHHHHHHHH-HHH
Confidence 578999999887653 4444331 13332 23443 1234444 67899999999 686
Q ss_pred e
Q 029332 97 R 97 (195)
Q Consensus 97 R 97 (195)
.
T Consensus 91 Q 91 (159)
T PF12129_consen 91 Q 91 (159)
T ss_pred H
Confidence 4
No 13
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.18 E-value=34 Score=35.87 Aligned_cols=6 Identities=33% Similarity=0.285 Sum_probs=2.4
Q ss_pred HHHHhh
Q 029332 79 RNKLKV 84 (195)
Q Consensus 79 ~~KL~l 84 (195)
..||.+
T Consensus 659 fakL~~ 664 (1102)
T KOG1924|consen 659 FAKLAL 664 (1102)
T ss_pred HHHHHH
Confidence 334443
No 14
>CHL00105 psaJ photosystem I subunit IX
Probab=31.56 E-value=42 Score=22.54 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHhhhcCCCChhhhH
Q 029332 123 PFMAFGTYVVLAGFTLGLQGKFTPEALN 150 (195)
Q Consensus 123 PlMa~vTYILL~g~~~G~~g~FsPE~Lg 150 (195)
|+++.+-..+++|+...+ +||-|+.|.
T Consensus 12 PVla~~w~~~tag~lIEi-NRffPD~L~ 38 (42)
T CHL00105 12 PVLSTLWFGFLAGLLIEI-NRFFPDALT 38 (42)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCChhhc
Confidence 788888888888887766 578888763
No 15
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=31.12 E-value=43 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHhhhcCCCChhhhH
Q 029332 123 PFMAFGTYVVLAGFTLGLQGKFTPEALN 150 (195)
Q Consensus 123 PlMa~vTYILL~g~~~G~~g~FsPE~Lg 150 (195)
|+++.+-..+++|+...+ +||-|+.|.
T Consensus 12 PVla~~w~~~tag~lIEi-NRffPD~L~ 38 (42)
T PRK02733 12 PVVAAIWLTLTAGILIEF-NRFFPDLLF 38 (42)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCchHhc
Confidence 788888888888887766 578888773
No 16
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=30.68 E-value=1.1e+02 Score=26.44 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhcCCCChhhhHHHHHHH
Q 029332 127 FGTYVVLAGFTLGLQGKFTPEALNWLFIKG 156 (195)
Q Consensus 127 ~vTYILL~g~~~G~~g~FsPE~Lg~~as~a 156 (195)
+.+.+++..+.+.++|+|+++.|..-+..+
T Consensus 36 ~~~~llLf~~WllLsg~~s~~~l~lG~i~~ 65 (201)
T PRK08382 36 VLTWLILLAFWVIISGDLSPRGLILGALTT 65 (201)
T ss_pred HHHHHHHHHHHHHHhCCcCHHHHHHHHHHH
Confidence 778899999999999999998775544333
No 17
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=22.31 E-value=3.1e+02 Score=20.97 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHH
Q 029332 114 DINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIK 155 (195)
Q Consensus 114 DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~ 155 (195)
.+|.|| |-+=+..|.+-+.+..+...+-+|..+...++-
T Consensus 9 Q~NDPD---~~lWv~iY~i~a~~~~~~~~~~~~~~~~~~~~~ 47 (104)
T PF15071_consen 9 QINDPD---PELWVPIYGIAAVLCVLANFGVTPNWIWKIAAA 47 (104)
T ss_pred ecCCCC---HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 478888 455566676666665566555566666554443
No 18
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=21.32 E-value=2.3e+02 Score=23.08 Aligned_cols=25 Identities=28% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhcCCCChhhhHH
Q 029332 127 FGTYVVLAGFTLGLQGKFTPEALNW 151 (195)
Q Consensus 127 ~vTYILL~g~~~G~~g~FsPE~Lg~ 151 (195)
..+.+++..+..-++|+|+++.+-.
T Consensus 9 ~~~~~~l~~~W~lL~g~~~~~~l~~ 33 (162)
T PRK08965 9 PLLSLWLALVWLLLNGSFSLGNLLL 33 (162)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5678888999999999999876543
Done!