Query 029332
Match_columns 195
No_of_seqs 127 out of 213
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 27.7 57 0.002 18.9 2.8 19 10-28 2-20 (26)
2 1wlp_A Cytochrome B-245 light 23.9 54 0.0018 19.1 2.2 14 11-24 3-16 (26)
3 2veb_A Protoglobin; hemoprotei 15.9 4.5E+02 0.015 21.5 7.0 61 73-150 105-168 (195)
4 1jb0_J Photosystem 1 reaction 13.1 71 0.0024 20.4 1.1 26 123-149 12-37 (41)
5 1vf5_E Protein PET L; photosyn 9.8 2.2E+02 0.0077 17.2 2.5 16 125-140 3-18 (32)
6 3u5c_V S26, YS25, 40S ribosoma 8.5 87 0.003 22.9 0.3 6 118-123 9-14 (87)
7 1gcv_B Hemoglobin; oxygen stor 8.4 5.9E+02 0.02 18.5 5.1 37 127-165 95-131 (136)
8 2xzm_Z RPS21E; ribosome, trans 8.3 90 0.0031 23.3 0.3 6 118-123 24-29 (97)
9 3o71_B Peptide of deleted in c 8.0 1.6E+02 0.0055 17.1 1.3 11 112-122 6-16 (27)
10 1jeb_A Hemoglobin zeta chain; 8.0 5.5E+02 0.019 18.4 4.7 36 128-165 102-137 (142)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=27.73 E-value=57 Score=18.86 Aligned_cols=19 Identities=37% Similarity=0.861 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q 029332 10 GPGMPRPAADAQPNPFGNA 28 (195)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (195)
+||++.|+-||-|.+.|.-
T Consensus 2 ~PG~P~P~LPpRPaNLG~~ 20 (26)
T 1wa7_B 2 DPGMPTPPLPPRPANLGER 20 (26)
T ss_dssp CCCCCCCCCCCCTTSTTTS
T ss_pred CCCCCCCCCCCCccccccc
Confidence 4788888777777666544
No 2
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=23.89 E-value=54 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCC
Q 029332 11 PGMPRPAADAQPNP 24 (195)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (195)
-|.-+||++|+|.|
T Consensus 3 ~~ikqpP~nPPPRp 16 (26)
T 1wlp_A 3 LGSKQPPSNPPPRP 16 (26)
T ss_dssp CSSCCCCSSCCCCC
T ss_pred ccccCCCCCcCCCC
Confidence 46678888888865
No 3
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=15.92 E-value=4.5e+02 Score=21.47 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=32.2
Q ss_pred eChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccch---HHHHHHHHHHHHHhhhcCCCChhhh
Q 029332 73 VNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF---MAFGTYVVLAGFTLGLQGKFTPEAL 149 (195)
Q Consensus 73 VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPl---Ma~vTYILL~g~~~G~~g~FsPE~L 149 (195)
-|+.|+.+++++-+.=..-|. .+.+| | -|-+|||. .++|.-|.....-...+...+||..
T Consensus 105 YD~~Yl~~r~rIGlvHvRI~k------~~~dG----------V-~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~~~~~~~ 167 (195)
T 2veb_A 105 YDQAWLDYQYEIGLRHHRTKK------NQTDN----------V-ESVPNIGYRYLVAFIYPITATMKPFLARKGHTPEEV 167 (195)
T ss_dssp CSHHHHHHHHHHHHHHSTTTT------TTTTT----------C-CCCSCCCHHHHHHTHHHHHHTTHHHHTSSSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcc------cccCC----------C-CcccCCchHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 578888888777765332221 11111 2 45678776 4444333333333334456778875
Q ss_pred H
Q 029332 150 N 150 (195)
Q Consensus 150 g 150 (195)
.
T Consensus 168 ~ 168 (195)
T 2veb_A 168 E 168 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=13.12 E-value=71 Score=20.39 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHhhhcCCCChhhh
Q 029332 123 PFMAFGTYVVLAGFTLGLQGKFTPEAL 149 (195)
Q Consensus 123 PlMa~vTYILL~g~~~G~~g~FsPE~L 149 (195)
|+++.+-..+++|+...++ ||-|+.|
T Consensus 12 PVla~~w~~~tAg~lIEiN-RffPD~L 37 (41)
T 1jb0_J 12 PVLAAIWMTITAGILIEFN-RFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHSCCCS
T ss_pred hHHHHHHHHHHHHHHHHHH-HhCcccc
Confidence 7888888888888877664 4777765
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=9.76 E-value=2.2e+02 Score=17.15 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 029332 125 MAFGTYVVLAGFTLGL 140 (195)
Q Consensus 125 Ma~vTYILL~g~~~G~ 140 (195)
++++.|+++.++..|+
T Consensus 3 ~a~i~yi~~l~~~f~i 18 (32)
T 1vf5_E 3 LGAVFYIVFIALFFGI 18 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5677777776665543
No 6
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=8.51 E-value=87 Score=22.95 Aligned_cols=6 Identities=50% Similarity=1.298 Sum_probs=4.2
Q ss_pred Cccccc
Q 029332 118 PDLYIP 123 (195)
Q Consensus 118 PDLYIP 123 (195)
=|||||
T Consensus 9 VDLYiP 14 (87)
T 3u5c_V 9 VELYVP 14 (87)
T ss_dssp CSSCCC
T ss_pred EEEEcc
Confidence 377777
No 7
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=8.40 E-value=5.9e+02 Score=18.53 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHH
Q 029332 127 FGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (195)
Q Consensus 127 ~vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~ 165 (195)
.+.-+|+..+...+...|+||+. .++..+...+.+++
T Consensus 95 ~~~~~Ll~~l~~~lg~~~t~e~~--~AW~k~~~~va~~l 131 (136)
T 1gcv_B 95 LLTDCIIVELAYLRKDCFTPHIQ--GIWDKFFEVVIDAI 131 (136)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHH
Confidence 35566777777767678999975 34444444454544
No 8
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=8.30 E-value=90 Score=23.33 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=5.0
Q ss_pred Cccccc
Q 029332 118 PDLYIP 123 (195)
Q Consensus 118 PDLYIP 123 (195)
=|||||
T Consensus 24 VDLYiP 29 (97)
T 2xzm_Z 24 IDAYLP 29 (97)
T ss_dssp CSSSCC
T ss_pred EeEecc
Confidence 589998
No 9
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=8.04 E-value=1.6e+02 Score=17.10 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=8.6
Q ss_pred ccCCCCCcccc
Q 029332 112 IYDINAPDLYI 122 (195)
Q Consensus 112 r~DvNAPDLYI 122 (195)
..|+.-|||.|
T Consensus 6 ~kDlkppdlwi 16 (27)
T 3o71_B 6 QKDLRPPDLWI 16 (27)
T ss_pred cCCCCCcceee
Confidence 35788899987
No 10
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=8.04 E-value=5.5e+02 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHH
Q 029332 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (195)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~ 165 (195)
+.=+|+..+...+...||||+. .++..+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~~~~~~v~~~l 137 (142)
T 1jeb_A 102 LSHCLLVTLAARFPADFTAEAH--AAWDKFLSVVSSVL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 4456666666666678999965 34544445555544
Done!