Query 029332
Match_columns 195
No_of_seqs 127 out of 213
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5ya1 a.4.1.8 (A:3-56) Rob t 24.2 14 0.001 21.8 1.3 38 47-84 3-42 (54)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 16.9 25 0.0018 20.5 1.3 37 48-84 4-42 (54)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 14.5 49 0.0035 18.1 2.0 15 125-139 1-15 (30)
4 d2c0ga1 a.71.1.1 (A:1146-1251) 8.8 72 0.0052 21.9 1.8 18 46-63 54-71 (106)
5 d1g7da_ a.71.1.1 (A:) Endoplas 8.5 74 0.0054 21.7 1.8 18 46-63 53-70 (106)
6 d1xq5a_ a.1.1.2 (A:) Hemoglobi 7.4 2.4E+02 0.018 18.7 4.3 36 128-165 102-137 (142)
7 d1jb0j_ f.23.18.1 (J:) Subunit 6.7 78 0.0057 18.7 1.0 26 123-149 12-37 (41)
8 d1outa_ a.1.1.2 (A:) Hemoglobi 6.7 3.2E+02 0.023 18.0 4.7 36 128-165 102-137 (142)
9 d1tf4a2 b.2.2.2 (A:461-605) En 6.7 48 0.0035 23.9 -0.0 10 66-75 38-47 (145)
10 d1d5ya2 a.4.1.8 (A:57-121) Rob 6.4 68 0.0049 19.5 0.6 24 169-192 5-28 (65)
No 1
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.24 E-value=14 Score=21.80 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhh
Q 029332 47 KILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKV 84 (195)
Q Consensus 47 ~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~l 84 (195)
.+++...+||++|+++=++ .|-..+.++.+|..+..+-
T Consensus 3 ~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 42 (54)
T d1d5ya1 3 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (54)
T ss_dssp HHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3577788999999887665 7788899999998877654
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=16.89 E-value=25 Score=20.52 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhh
Q 029332 48 ILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKV 84 (195)
Q Consensus 48 ~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~l 84 (195)
.+++-.+||++|+.+=++ .|-..+.++.+++.++.+-
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467778999999876554 6778888999888887664
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.50 E-value=49 Score=18.14 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhh
Q 029332 125 MAFGTYVVLAGFTLG 139 (195)
Q Consensus 125 Ma~vTYILL~g~~~G 139 (195)
|--+|||++.+.+.|
T Consensus 1 me~i~yv~ifac~i~ 15 (30)
T d2axtt1 1 METITYVFIFACIIA 15 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHH
Confidence 344667766555443
No 4
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.77 E-value=72 Score=21.90 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.0
Q ss_pred HHHHhhhhHHHHhhhhhh
Q 029332 46 EKILGSSSEYVQSNISRY 63 (195)
Q Consensus 46 ~~~~~~g~~yvq~n~~~y 63 (195)
+++++.|.+|+++.+.|.
T Consensus 54 ~KIl~~g~~fv~~E~~RL 71 (106)
T d2c0ga1 54 RKIHEVGYDFLEEETKRL 71 (106)
T ss_dssp HHHHHHCTHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHH
Confidence 466889999999998874
No 5
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.47 E-value=74 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.8
Q ss_pred HHHHhhhhHHHHhhhhhh
Q 029332 46 EKILGSSSEYVQSNISRY 63 (195)
Q Consensus 46 ~~~~~~g~~yvq~n~~~y 63 (195)
+++++.|.+|+++.+.|.
T Consensus 53 ~Kilekg~~~~~~E~~RL 70 (106)
T d1g7da_ 53 GKILDQGEDFPASELARI 70 (106)
T ss_dssp HHHHHSCTHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHH
Confidence 466889999999988874
No 6
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}
Probab=7.36 E-value=2.4e+02 Score=18.72 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHH
Q 029332 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (195)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~ 165 (195)
+.=+|+..+...+...|+||.- .|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1xq5a_ 102 LSHCILVLLAVKFPKDFTPEVH--ISYDKFFSALARAL 137 (142)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCHHHH--HHHHHHHHHHHHHH
Confidence 3445666666677778999963 34444444444444
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=6.74 E-value=78 Score=18.67 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHhhhcCCCChhhh
Q 029332 123 PFMAFGTYVVLAGFTLGLQGKFTPEAL 149 (195)
Q Consensus 123 PlMa~vTYILL~g~~~G~~g~FsPE~L 149 (195)
|+.+.+-+.+++|+...+ +||=|+.|
T Consensus 12 PVla~~w~~~tAG~lIEi-NRFfPD~L 37 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIEF-NRFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHH-HhhCchhh
Confidence 667777777777766655 35556554
No 8
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=6.71 E-value=3.2e+02 Score=18.02 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHH
Q 029332 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (195)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~ 165 (195)
+.=+|+..+...+...||||.- .|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1outa_ 102 LSHNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 3444555556666678999965 34444444444444
No 9
>d1tf4a2 b.2.2.2 (A:461-605) Endo/exocellulase:cellobiose E-4, C-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Probab=6.66 E-value=48 Score=23.94 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=8.9
Q ss_pred CCcceeeeCh
Q 029332 66 DPQYYFQVND 75 (195)
Q Consensus 66 ~lkyYF~Vdn 75 (195)
++||||++|.
T Consensus 38 ~~RYyft~d~ 47 (145)
T d1tf4a2 38 TFRYWFTLDE 47 (145)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEECCC
Confidence 6799999996
No 10
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.36 E-value=68 Score=19.51 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHHHHhCCCCCChhhheeeccccc
Q 029332 169 VTLLSLGSGEAPLLDVVAYAGESY 192 (195)
Q Consensus 169 ~~~Y~l~~~~~~~lDLvAy~GYKy 192 (195)
-++.+|-.++.++-||..-+||.-
T Consensus 5 ~A~~lL~~t~~~i~~IA~~~Gf~~ 28 (65)
T d1d5ya2 5 KSAVALRLTARPILDIALQYRFDS 28 (65)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCC
Confidence 344555567899999999999974
Done!