BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029333
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=nqrF PE=3 SV=1
Length = 407
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKE 142
H T G KL + +N+ L S C GGGTC C V+EG G E
Sbjct: 45 HSLTVPAGGKLLQTLATNNVFLS-------SACGGGGTCAQCKCVVVEGG---GEMLPTE 94
Query: 143 KEKLKRK--PKNWRLACQTTV 161
+ R+ + WRL+CQT V
Sbjct: 95 ESHFTRRQAKEGWRLSCQTPV 115
>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=nqrF PE=3 SV=1
Length = 407
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKE 142
H T G KL + +N+ L S C GGGTC C V+EG G E
Sbjct: 45 HSLTVPAGGKLLQTLAANNVFLS-------SACGGGGTCAQCKCVVVEGG---GEMLPTE 94
Query: 143 KEKLKRK--PKNWRLACQTTV 161
+ R+ + WRL+CQT V
Sbjct: 95 ESHFTRRQAKEGWRLSCQTPV 115
>sp|P44428|FER_HAEIN 2Fe-2S ferredoxin OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=fdx PE=3 SV=2
Length = 113
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 73 VLLP--DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIE 130
+ LP D P+ A G L ++ N+ ++++ C G C TC V V E
Sbjct: 5 IFLPNEDFCPEGMVVDAATGDNLLEVAHNAGVEIHHA-------CDGSCACTTCHVIVRE 57
Query: 131 GKELLGSRTDKEKEKLKRK---PKNWRLACQTTVGTPDSTGLVVIQQLPEWK 179
G + L +D+E++ L + + RL+CQ VG D ++ ++P++
Sbjct: 58 GFDSLNETSDQEEDMLDKAWGLEMDSRLSCQCVVGNED-----LVVEIPKYN 104
>sp|A6V3A2|NQRF_PSEA7 Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain PA7) GN=nqrF PE=3 SV=1
Length = 407
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKE 142
H T G KL + +N+ L S C GGGTC C V++G G E
Sbjct: 45 HSLTVPAGGKLLQTLAANNVFLS-------SACGGGGTCAQCKCVVVDGG---GEMLPTE 94
Query: 143 KEKLKRK--PKNWRLACQTTV 161
+ R+ + WRL+CQT V
Sbjct: 95 ESHFTRRQAKEGWRLSCQTPV 115
>sp|O68983|CSMJ_CHLTE Chlorosome protein J OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=csmJ PE=4 SV=1
Length = 225
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 115 CAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRK--PKNWRLACQTTV 161
C G G C +C V V+EG E L + EK + K + RLAC+TT+
Sbjct: 33 CGGNGICQSCFVYVLEGAECLSEPGEDEKAFISDKLFAEGGRLACRTTI 81
>sp|A6VW13|NQRF_MARMS Na(+)-translocating NADH-quinone reductase subunit F OS=Marinomonas
sp. (strain MWYL1) GN=nqrF PE=3 SV=1
Length = 408
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEK 145
TA G KL + NS I L S C GGGTC C +V G GS E+
Sbjct: 48 TAPAGGKLLQTLANSGIFLS-------SACGGGGTCAQCKCKVTSGG---GSMLSTEQSH 97
Query: 146 LKRKP--KNWRLACQTTV 161
R+ + +RL+CQ +V
Sbjct: 98 FTRRDEKEGYRLSCQVSV 115
>sp|Q821Q3|NQRF_CHLCV Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila caviae (strain GPIC) GN=nqrF PE=3 SV=1
Length = 431
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKE--LLGSRTDKE 142
+T G+ L +L+S I + P C G TC C V++++ + L R
Sbjct: 53 KTVDSGRTLLSSLLDSGIPIPSP-------CGGKATCKQCKVKIVKNADQPLETDRATFS 105
Query: 143 KEKLKRKPKNWRLACQTTV 161
K++L++ WRL+CQT V
Sbjct: 106 KQQLEQ---GWRLSCQTKV 121
>sp|O68988|CSMI_CHLTE Chlorosome protein I OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=csmI PE=1 SV=1
Length = 244
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 115 CAGGGTCGTCMVEVIEGKELLGSRTDKEKEKL--KRKPKNWRLACQTTVG 162
C G G C C + V EG + L TD EK L ++ R+ACQ T+
Sbjct: 33 CGGHGLCQACYITVQEGADCLAPLTDVEKAFLSPRQIAAGGRIACQATIA 82
>sp|Q255Y6|NQRF_CHLFF Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila felis (strain Fe/C-56) GN=nqrF PE=3
SV=1
Length = 431
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 113 SNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTV 161
S C G TC C V++++G + TD+ ++ + WRL+CQT V
Sbjct: 74 SPCGGKATCKQCKVKIVKGAD-QPLETDRATFSKRQLEQGWRLSCQTKV 121
>sp|P21149|FER_TRIVA Ferredoxin OS=Trichomonas vaginalis PE=1 SV=1
Length = 100
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 115 CAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTV 161
C G CG C+ + + GK + D EKE L+ +P N RLAC T+
Sbjct: 46 CQGNKACGKCICKHVSGKV---AAEDDEKEFLEDQPANARLACAITL 89
>sp|Q605A0|NQRF_METCA Na(+)-translocating NADH-quinone reductase subunit F
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=nqrF PE=3 SV=1
Length = 407
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 113 SNCAGGGTCGTCMVEVIE-GKELLGSRTDKEKEKLKRKPKNWRLACQTTV 161
S C GGGTC C V+V+E G E+L T+ + + RL+CQ TV
Sbjct: 66 SACGGGGTCAQCRVQVLEGGGEIL--PTELSHITKREAAQGDRLSCQVTV 113
>sp|Q3KKV3|NQRF_CHLTA Na(+)-translocating NADH-quinone reductase subunit F OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=nqrF PE=3 SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 70 VHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129
VH L D +T G+ L +L+S I + P C G C C V +
Sbjct: 38 VHPCKLKINNDDSLTKTVDSGKTLLSSLLDSGIAIPSP-------CGGKAACKQCKVRIT 90
Query: 130 EGKE--LLGSRTDKEKEKLKRKPKNWRLACQTTV 161
+ + L R+ K++L++ WRL+CQT V
Sbjct: 91 KNADEPLETDRSTFSKQQLEQ---GWRLSCQTKV 121
>sp|O84745|NQRF_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrF PE=3
SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 70 VHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129
VH L D +T G+ L +L+S I + P C G C C V +
Sbjct: 38 VHPCKLKINNDDSLTKTVDSGKTLLSSLLDSGIAIPSP-------CGGKAACKQCKVRIT 90
Query: 130 EGKE--LLGSRTDKEKEKLKRKPKNWRLACQTTV 161
+ + L R+ K++L++ WRL+CQT V
Sbjct: 91 KNADEPLETDRSTFSKQQLEQ---GWRLSCQTKV 121
>sp|Q9Z723|NQRF_CHLPN Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia pneumoniae GN=nqrF PE=3 SV=1
Length = 431
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKE--LLGSRTDKE 142
+T GQ L +L+S I + P C G TC C V V++ + L R+
Sbjct: 53 KTVESGQTLLVSLLSSGIPIPSP-------CGGKATCKQCKVRVVKNADEPLETDRSTFS 105
Query: 143 KEKLKRKPKNWRLACQTTV 161
K +L+ + WRL+CQ V
Sbjct: 106 KRQLE---EGWRLSCQCKV 121
>sp|Q9PLI3|NQRF_CHLMU Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nqrF PE=3
SV=1
Length = 431
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 70 VHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129
VH L D +T G+ L +L+S I + P C G C C + +
Sbjct: 38 VHPCKLRINNDDSLTKTVDSGKTLLSSLLDSGIAIPSP-------CGGKAACKQCKIRIT 90
Query: 130 EGKE--LLGSRTDKEKEKLKRKPKNWRLACQTTV 161
+ + L R+ K++L++ WRL+CQT V
Sbjct: 91 KNVDEPLETDRSTFSKQQLEQ---GWRLSCQTKV 121
>sp|Q4FPV2|NQRF_PSYA2 Na(+)-translocating NADH-quinone reductase subunit F
OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
GN=nqrF PE=3 SV=1
Length = 411
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 80 PDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRT 139
PD T GG KL + + I L S C GGGTC C VIEG GS
Sbjct: 45 PDNDVVTPAGG-KLLQTLASEGIFLS-------SACGGGGTCAQCRCRVIEGG---GSIL 93
Query: 140 DKEKEKLKRKP--KNWRLACQTTV 161
E+ + + RLACQ V
Sbjct: 94 PTEEGYFTQGEIRNHMRLACQVAV 117
>sp|Q1Q7Z7|NQRF_PSYCK Na(+)-translocating NADH-quinone reductase subunit F
OS=Psychrobacter cryohalolentis (strain K5) GN=nqrF PE=3
SV=1
Length = 411
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 113 SNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKP--KNWRLACQTTV 161
S C GGGTC C VIEG GS E+ + + RLACQ V
Sbjct: 70 SACGGGGTCAQCRCRVIEGG---GSILPTEEGYFTQGEIRNHMRLACQVAV 117
>sp|D5ARY7|FER4_RHOCB Ferredoxin-4 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=fdxC PE=3 SV=1
Length = 95
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 119 GTCGTCMVEVIEGKELLGSRTDKEKEKLKRK--PKNWRLACQTTV 161
G CGTCM ++EG E L T E L+ K+ RLACQ V
Sbjct: 41 GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQCRV 85
>sp|P0CY92|FER4_RHOCA Ferredoxin-4 OS=Rhodobacter capsulatus GN=fdxC PE=3 SV=1
Length = 95
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 119 GTCGTCMVEVIEGKELLGSRTDKEKEKLKRK--PKNWRLACQTTV 161
G CGTCM ++EG E L T E L+ K+ RLACQ V
Sbjct: 41 GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQCRV 85
>sp|P59799|FER5_AQUAE 2Fe-2S ferredoxin-5 OS=Aquifex aeolicus (strain VF5) GN=fdx5 PE=1
SV=2
Length = 96
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 113 SNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRK---PKNWRLACQTTVGTPDSTGL 169
S C G G C +C V +I G E L +EK+ L+ P+ RL+CQ + + G
Sbjct: 34 SACGGHGQCTSCKVLIISGSENLYPAEFEEKDTLEENGMDPETERLSCQAKL---NGKGD 90
Query: 170 VVI 172
VVI
Sbjct: 91 VVI 93
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 82 IHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141
I RTA Q RD SNI+ RP SN A GG+ G ++ SR ++
Sbjct: 363 IKTRTAKPRQSPRD-RATSNIESPTTRVRPASNMADGGSVGAGGIDYNMVNPKPFSRREE 421
Query: 142 EKEKLKRKPKNWR 154
EK+ + +P+ R
Sbjct: 422 EKQAIANQPETKR 434
>sp|Q751E8|PHO85_ASHGO Negative regulator of the PHO system OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=PHO85 PE=3 SV=2
Length = 301
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 120 TCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLPEW 178
+CG + E+I GK L D E+ KL + T+GTP V + QLP++
Sbjct: 194 SCGCILAEMIMGKALFPGTNDDEQLKLIFE----------TMGTPTEQTWVGVSQLPKY 242
>sp|D4AVK1|RTC5_ARTBC Restriction of telomere capping protein 5 OS=Arthroderma benhamiae
(strain ATCC MYA-4681 / CBS 112371) GN=RTC5 PE=3 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 9 YRLASYSLPYNFNCTTNSHKSLKFYKRVSFSRSRIRATATISENDSQAN----AAEEPPV 64
Y + S SLPY F+ T + L F K + SR + T ++SE + + PP+
Sbjct: 287 YWVISTSLPYMFDPLTPLFEHLLFSKNLDLSRRKDSGTCSVSEEKQKKTEFCISPSHPPI 346
Query: 65 V 65
+
Sbjct: 347 I 347
>sp|P33007|TERPB_PSESP Terpredoxin OS=Pseudomonas sp. GN=terPB PE=1 SV=2
Length = 106
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 112 LSNCAGGGTCGTCMVEVIEG-KELLGSRTDKEKEKLKRKPK----NWRLACQTTVGTPDS 166
++ C G C TC +E+ + E++G E + L+ + RL+CQ + P
Sbjct: 37 VAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLSCQVFI-DPSM 95
Query: 167 TGLVVIQQLP 176
GL+V LP
Sbjct: 96 DGLIVRVPLP 105
>sp|D4DDJ7|RTC5_TRIVH Restriction of telomere capping protein 5 OS=Trichophyton
verrucosum (strain HKI 0517) GN=RTC5 PE=3 SV=1
Length = 660
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 9 YRLASYSLPYNFNCTTNSHKSLKFYKRVSFSRSRIRATATISENDSQANAA----EEPPV 64
Y + S SLPY F+ T + L F K + SR + T ++SE + PPV
Sbjct: 287 YWVISTSLPYMFDPLTPLFEHLLFSKNLDLSRRKDSGTCSVSEEKQTKTESYFSPSHPPV 346
Query: 65 V 65
+
Sbjct: 347 I 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,009,836
Number of Sequences: 539616
Number of extensions: 3144999
Number of successful extensions: 6571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 6545
Number of HSP's gapped (non-prelim): 64
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)