Query 029333
Match_columns 195
No_of_seqs 174 out of 1308
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02007 fdx_isc ferredoxin, 99.8 5.8E-20 1.3E-24 141.1 10.6 97 63-175 1-100 (110)
2 PLN02593 adrenodoxin-like ferr 99.8 8.8E-20 1.9E-24 142.0 11.0 94 74-179 6-104 (117)
3 PTZ00490 Ferredoxin superfamil 99.8 2.4E-19 5.2E-24 144.4 11.5 103 59-179 32-139 (143)
4 KOG3309 Ferredoxin [Energy pro 99.8 1.9E-18 4.1E-23 140.0 9.5 94 74-179 49-146 (159)
5 COG0633 Fdx Ferredoxin [Energy 99.7 9.4E-18 2E-22 127.6 9.9 69 86-162 18-88 (102)
6 TIGR02008 fdx_plant ferredoxin 99.7 6.1E-16 1.3E-20 116.1 9.4 81 76-176 10-92 (97)
7 PRK10713 2Fe-2S ferredoxin Yfa 99.6 9.6E-16 2.1E-20 112.4 9.3 82 62-173 1-83 (84)
8 CHL00134 petF ferredoxin; Vali 99.6 1.9E-15 4E-20 114.2 10.1 72 86-175 20-93 (99)
9 PTZ00038 ferredoxin; Provision 99.6 6.2E-15 1.3E-19 123.8 9.3 84 75-179 102-187 (191)
10 PLN03136 Ferredoxin; Provision 99.6 1.2E-14 2.5E-19 117.9 9.8 81 76-177 62-144 (148)
11 TIGR01941 nqrF NADH:ubiquinone 99.6 1.5E-14 3.2E-19 132.0 10.0 93 59-174 26-120 (405)
12 PRK05464 Na(+)-translocating N 99.5 4.6E-14 1E-18 128.9 10.7 85 86-185 49-136 (409)
13 COG3894 Uncharacterized metal- 99.5 9.7E-15 2.1E-19 136.9 5.8 99 62-187 1-99 (614)
14 cd00207 fer2 2Fe-2S iron-sulfu 99.5 9.4E-14 2E-18 99.2 6.9 69 86-172 13-83 (84)
15 COG2871 NqrF Na+-transporting 99.5 6.4E-14 1.4E-18 124.8 6.8 84 86-185 50-137 (410)
16 PF00111 Fer2: 2Fe-2S iron-sul 99.5 9.6E-14 2.1E-18 98.7 5.7 71 77-161 4-77 (78)
17 PRK05713 hypothetical protein; 99.5 1.8E-13 3.8E-18 120.6 8.3 71 86-174 12-84 (312)
18 PRK07609 CDP-6-deoxy-delta-3,4 99.4 4.4E-13 9.5E-18 118.7 8.5 73 86-174 15-89 (339)
19 PRK11872 antC anthranilate dio 99.4 6.9E-13 1.5E-17 118.4 9.5 80 76-173 10-91 (340)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.3 1.4E-11 2.9E-16 109.7 10.8 73 77-163 270-344 (352)
21 PRK10684 HCP oxidoreductase, N 99.3 5.1E-12 1.1E-16 112.1 6.8 69 86-172 261-331 (332)
22 PRK07569 bidirectional hydroge 98.5 1.4E-07 3E-12 80.8 6.0 75 62-177 1-80 (234)
23 PLN00129 succinate dehydrogena 98.2 3.5E-06 7.7E-11 74.6 6.9 65 89-177 71-135 (276)
24 PF13510 Fer2_4: 2Fe-2S iron-s 98.2 1.2E-06 2.7E-11 64.0 2.9 61 77-172 9-78 (82)
25 PRK06259 succinate dehydrogena 98.1 7.1E-06 1.5E-10 76.6 7.7 57 86-176 26-88 (486)
26 PRK08166 NADH dehydrogenase su 98.1 4.5E-06 9.7E-11 83.1 5.3 67 77-172 7-78 (847)
27 PF13085 Fer2_3: 2Fe-2S iron-s 98.0 3.7E-06 8E-11 65.2 3.4 68 86-177 24-94 (110)
28 COG0479 FrdB Succinate dehydro 97.8 4.1E-05 8.9E-10 66.5 6.3 69 86-178 25-93 (234)
29 PRK12577 succinate dehydrogena 97.8 9.8E-05 2.1E-09 66.6 8.9 68 86-177 24-101 (329)
30 PRK12385 fumarate reductase ir 97.8 2.9E-05 6.2E-10 67.4 5.0 89 61-177 3-96 (244)
31 PRK13552 frdB fumarate reducta 97.8 1.8E-05 3.9E-10 68.5 3.7 68 86-177 29-96 (239)
32 PRK08640 sdhB succinate dehydr 97.8 3.7E-05 8E-10 67.0 5.5 67 86-177 28-101 (249)
33 PRK12386 fumarate reductase ir 97.7 9.5E-05 2.1E-09 64.7 6.9 68 86-176 25-92 (251)
34 PRK07570 succinate dehydrogena 97.7 7.9E-05 1.7E-09 65.1 6.4 67 87-176 27-103 (250)
35 PRK12576 succinate dehydrogena 97.6 0.00049 1.1E-08 60.9 9.7 68 86-176 30-99 (279)
36 PRK11433 aldehyde oxidoreducta 97.5 0.00066 1.4E-08 58.5 9.1 79 62-176 49-127 (217)
37 PRK12575 succinate dehydrogena 97.5 0.00023 5E-09 61.7 6.3 62 90-177 33-94 (235)
38 TIGR00384 dhsB succinate dehyd 97.5 0.0001 2.2E-09 62.6 4.0 66 86-177 20-87 (220)
39 PRK12814 putative NADPH-depend 97.5 0.00016 3.6E-09 70.2 5.9 73 62-175 1-78 (652)
40 PRK08493 NADH dehydrogenase su 97.3 0.00042 9E-09 69.6 5.7 70 77-177 7-76 (819)
41 PRK05950 sdhB succinate dehydr 97.2 0.00055 1.2E-08 58.6 5.2 67 86-176 23-90 (232)
42 PTZ00305 NADH:ubiquinone oxido 97.2 0.00059 1.3E-08 61.2 5.3 54 59-131 63-122 (297)
43 PRK07860 NADH dehydrogenase su 97.1 0.00067 1.5E-08 67.6 5.8 49 60-128 2-55 (797)
44 PRK09130 NADH dehydrogenase su 97.0 0.00085 1.9E-08 66.0 5.0 68 77-177 7-79 (687)
45 PRK09129 NADH dehydrogenase su 96.9 0.00094 2E-08 66.0 4.6 67 77-177 7-78 (776)
46 TIGR01973 NuoG NADH-quinone ox 96.8 0.0012 2.7E-08 63.4 4.1 68 77-177 4-76 (603)
47 PRK09908 xanthine dehydrogenas 96.6 0.0061 1.3E-07 50.3 6.3 52 64-132 8-59 (159)
48 TIGR03193 4hydroxCoAred 4-hydr 96.5 0.009 2E-07 48.7 6.7 70 77-176 7-77 (148)
49 COG1034 NuoG NADH dehydrogenas 96.2 0.0098 2.1E-07 58.9 6.2 66 77-171 7-72 (693)
50 TIGR03198 pucE xanthine dehydr 95.1 0.059 1.3E-06 44.0 5.9 45 77-131 9-54 (151)
51 COG2080 CoxS Aerobic-type carb 94.6 0.1 2.3E-06 42.9 6.1 46 77-132 9-55 (156)
52 COG3383 Uncharacterized anaero 94.3 0.057 1.2E-06 54.3 4.6 44 77-132 11-59 (978)
53 PRK09800 putative hypoxanthine 94.1 0.099 2.1E-06 53.6 6.0 46 78-132 9-54 (956)
54 TIGR03313 Se_sel_red_Mo probab 91.9 0.23 5E-06 51.0 4.9 45 78-132 5-50 (951)
55 TIGR02969 mam_aldehyde_ox alde 91.6 0.28 6.1E-06 52.0 5.4 88 63-176 1-89 (1330)
56 TIGR02963 xanthine_xdhA xanthi 91.4 0.26 5.7E-06 46.6 4.4 80 77-176 6-86 (467)
57 TIGR03311 Se_dep_Molyb_1 selen 89.6 0.55 1.2E-05 47.6 5.2 39 86-132 11-50 (848)
58 KOG3049 Succinate dehydrogenas 86.8 3.5 7.7E-05 36.2 7.6 64 89-176 75-138 (288)
59 cd06218 DHOD_e_trans FAD/NAD b 86.4 0.97 2.1E-05 38.4 4.1 37 92-130 194-230 (246)
60 PLN00192 aldehyde oxidase 86.0 1.3 2.9E-05 47.1 5.5 44 78-129 12-56 (1344)
61 TIGR01372 soxA sarcosine oxida 84.8 4.2 9.1E-05 41.8 8.3 75 60-162 8-86 (985)
62 PRK00054 dihydroorotate dehydr 82.9 0.66 1.4E-05 39.4 1.5 37 92-130 195-231 (250)
63 PRK06222 ferredoxin-NADP(+) re 81.4 1.3 2.9E-05 38.5 2.9 35 92-128 195-229 (281)
64 cd06219 DHOD_e_trans_like1 FAD 80.6 1.3 2.7E-05 37.7 2.4 34 92-128 194-228 (248)
65 cd06220 DHOD_e_trans_like2 FAD 80.3 1 2.3E-05 37.7 1.8 37 91-129 180-216 (233)
66 cd06221 sulfite_reductase_like 78.0 1.3 2.8E-05 37.8 1.7 35 91-127 203-240 (253)
67 cd01817 RGS12_RBD Ubiquitin do 75.6 3.8 8.3E-05 29.8 3.3 30 73-104 4-37 (73)
68 COG4630 XdhA Xanthine dehydrog 75.3 6.8 0.00015 37.1 5.7 52 62-128 6-58 (493)
69 PRK08345 cytochrome-c3 hydroge 75.3 1.5 3.3E-05 38.3 1.4 39 91-131 225-266 (289)
70 cd01760 RBD Ubiquitin-like dom 74.0 4.4 9.5E-05 29.1 3.3 25 73-99 4-28 (72)
71 KOG2282 NADH-ubiquinone oxidor 71.5 8.2 0.00018 37.9 5.3 53 61-131 29-86 (708)
72 PLN02906 xanthine dehydrogenas 70.7 4.2 9.1E-05 43.4 3.5 33 90-129 1-33 (1319)
73 smart00455 RBD Raf-like Ras-bi 68.5 7.2 0.00016 27.6 3.3 24 73-98 4-27 (70)
74 PF10418 DHODB_Fe-S_bind: Iron 67.9 2.9 6.3E-05 26.7 1.1 19 112-131 3-21 (40)
75 cd06192 DHOD_e_trans_like FAD/ 67.2 4.8 0.00011 33.8 2.6 36 92-129 192-229 (243)
76 TIGR02911 sulfite_red_B sulfit 66.6 3.1 6.7E-05 35.8 1.3 34 92-127 204-240 (261)
77 PF02196 RBD: Raf-like Ras-bin 64.9 7.3 0.00016 27.5 2.8 25 73-99 5-29 (71)
78 PRK08221 anaerobic sulfite red 58.8 4.8 0.0001 34.7 1.1 34 92-127 206-242 (263)
79 PRK05802 hypothetical protein; 57.2 7.9 0.00017 34.7 2.3 34 93-128 269-304 (320)
80 PRK12778 putative bifunctional 54.2 11 0.00024 37.4 2.9 35 92-128 195-229 (752)
81 KOG0430 Xanthine dehydrogenase 49.4 21 0.00045 38.0 4.0 48 77-131 8-55 (1257)
82 PRK12779 putative bifunctional 46.5 18 0.00039 37.3 3.2 36 92-129 861-896 (944)
83 PRK12775 putative trifunctiona 45.4 18 0.00039 37.6 2.9 35 92-128 195-229 (1006)
84 PRK01777 hypothetical protein; 45.0 61 0.0013 24.3 5.1 30 75-105 12-41 (95)
85 cd01816 Raf_RBD Ubiquitin doma 41.2 31 0.00066 25.2 2.8 25 74-100 5-29 (74)
86 PF03658 Ub-RnfH: RnfH family 39.5 35 0.00076 25.3 3.0 29 75-104 9-37 (84)
87 KOG1069 Exosomal 3'-5' exoribo 34.4 1.9E+02 0.0041 25.2 7.0 38 94-143 115-152 (217)
88 cd01818 TIAM1_RBD Ubiquitin do 34.0 49 0.0011 24.4 2.9 24 73-98 4-27 (77)
89 PF02824 TGS: TGS domain; Int 23.8 81 0.0017 21.2 2.4 27 74-104 4-30 (60)
90 PF14026 DUF4242: Protein of u 20.7 2.3E+02 0.0051 20.1 4.5 43 60-104 29-71 (77)
No 1
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.82 E-value=5.8e-20 Score=141.08 Aligned_cols=97 Identities=28% Similarity=0.522 Sum_probs=80.0
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKE 142 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E 142 (195)
|+|.| +.+..+.|.|.. + ++.+|+|||++|+++|+++ ++.|+|.|.||+|+|+|.+|...+.+.++.|
T Consensus 1 ~~~~~-~~~~~~~p~~~~-~---~~~~g~tLL~a~~~~gi~i-------~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e 68 (110)
T TIGR02007 1 PKIVF-LPHEDLCPEGAV-V---EAKPGETILDVALDNGIEI-------EHACEKSCACTTCHCIVREGFDSLEEASEQE 68 (110)
T ss_pred CeEEE-EeCcccCCCCeE-E---EECCCChHHHHHHHcCCCc-------cccCCCCceeCCCEEEEeeccccCCCCCHHH
Confidence 35555 456666787775 3 7899999999999999999 5779999999999999999987888888889
Q ss_pred HhhcCC---CCCCEEEeeeeEeeCCCCCccEEEecc
Q 029333 143 KEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQL 175 (195)
Q Consensus 143 ~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~l 175 (195)
.+.|+. ..++||||||+.+.+ ++++|+..
T Consensus 69 ~~~L~~~~~~~~~~RLaCq~~~~~----~dl~v~~~ 100 (110)
T TIGR02007 69 EDMLDKAWGLEPDSRLSCQAVVAD----EDLVVEIP 100 (110)
T ss_pred HHHHhhccCCCCCcEEeeeEEEcC----CCEEEEEC
Confidence 888864 478999999999863 47788644
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.82 E-value=8.8e-20 Score=141.98 Aligned_cols=94 Identities=29% Similarity=0.455 Sum_probs=75.0
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEec--CcccCCCCCHHHHhhcCC---
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIE--GKELLGSRTDKEKEKLKR--- 148 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~e--G~~~l~~~t~~E~~~L~~--- 148 (195)
+.++|... .+ ++..|+|||++++++||++ .+.|+|.|.||||+|+|++ +...++++++.|.++|+.
T Consensus 6 i~~~G~~~-~v-~~~~G~tLl~a~~~~gi~i-------~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~ 76 (117)
T PLN02593 6 VDKDGEER-TV-KAPVGMSLLEAAHENDIEL-------EGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFG 76 (117)
T ss_pred EcCCCCEE-EE-EECCCCcHHHHHHHcCCCC-------CccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccC
Confidence 35788763 33 7899999999999999998 4779999999999999964 345688999999999983
Q ss_pred CCCCEEEeeeeEeeCCCCCccEEEeccCCcc
Q 029333 149 KPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 179 (195)
Q Consensus 149 ~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~~ 179 (195)
..++||||||+.+ +++++|. +| .+|+..
T Consensus 77 ~~~~sRLaCQ~~v-~~~~~~~-~v-~ip~~~ 104 (117)
T PLN02593 77 LTETSRLGCQVIA-KPELDGM-RL-ALPAAT 104 (117)
T ss_pred CCCCeEecceeEe-ecCCCCE-EE-EcCchh
Confidence 5789999999999 5566444 44 466544
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.81 E-value=2.4e-19 Score=144.38 Aligned_cols=103 Identities=28% Similarity=0.456 Sum_probs=82.1
Q ss_pred CCCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCc-ccCC
Q 029333 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLG 136 (195)
Q Consensus 59 ~~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~ 136 (195)
+++..+|+| ..+||... ++ ++..|+|||+++.++ ++.+ .+.|+|.|+||||+|+|.+|+ ..++
T Consensus 32 ~~g~v~I~~------~~~dG~~~-~v-~~~~G~sLLeal~~~~~i~i-------~~~CGG~g~CgtC~V~V~~g~~~~l~ 96 (143)
T PTZ00490 32 TPGKVKVCV------KKRDGTHC-DV-EVPVGMSLMHALRDVAKLDV-------EGTCNGCMQCATCHVYLSAASFKKLG 96 (143)
T ss_pred CCCcEEEEE------EcCCCCEE-EE-EECCCccHHHHHHHcCCCCc-------cccCCCCCEeCCCEEEECCCccccCC
Confidence 456666666 34788763 34 899999999999995 6888 577999999999999999975 5678
Q ss_pred CCCHHHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCCcc
Q 029333 137 SRTDKEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 179 (195)
Q Consensus 137 ~~t~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~~ 179 (195)
+++++|.++|+. ..++||||||+.+ +++++|..+ .+|+..
T Consensus 97 ~~~~~E~~~L~~~~~~~~gsRLaCQi~v-~~~ldgl~V--~vp~~~ 139 (143)
T PTZ00490 97 GPSEEEEDVLAKALDVKETSRLACQVDL-TPEMDGLEV--ELPSYV 139 (143)
T ss_pred CCChHHHHHhhccccCCCCcEEeeeEEE-ecCCCCEEE--EeCccc
Confidence 999999999975 4789999999999 567765555 466543
No 4
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.77 E-value=1.9e-18 Score=140.02 Aligned_cols=94 Identities=34% Similarity=0.505 Sum_probs=83.4
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCc-ccCCCCCHHHHhhcCC---C
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLGSRTDKEKEKLKR---K 149 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~~~t~~E~~~L~~---~ 149 (195)
+.+||.. +++ ....|+|||+++.++||++ .+.|+|.-+|+||||.|.+-. +.+++++++|.++|+. +
T Consensus 49 v~~dG~~-~~i-~g~vGdtlLd~ah~n~idl-------eGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gL 119 (159)
T KOG3309|consen 49 VDPDGEE-IKI-KGKVGDTLLDAAHENNLDL-------EGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGL 119 (159)
T ss_pred ECCCCCE-EEe-eeecchHHHHHHHHcCCCc-------cccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcc
Confidence 4689987 665 8999999999999999999 467999999999999998875 5678899999999986 6
Q ss_pred CCCEEEeeeeEeeCCCCCccEEEeccCCcc
Q 029333 150 PKNWRLACQTTVGTPDSTGLVVIQQLPEWK 179 (195)
Q Consensus 150 ~~g~RLACQ~~v~s~d~~G~vvI~~lP~~~ 179 (195)
.+++||.||+.+ +++++|+.+ .+|+..
T Consensus 120 t~tSRLGCQI~l-~keldG~~v--~vP~at 146 (159)
T KOG3309|consen 120 TETSRLGCQIVL-TKELDGMRV--AVPEAT 146 (159)
T ss_pred ccccccceEEEe-ccccCCcEE--ECcccc
Confidence 899999999999 899999998 788843
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.75 E-value=9.4e-18 Score=127.55 Aligned_cols=69 Identities=32% Similarity=0.572 Sum_probs=61.1
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEee
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVG 162 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~ 162 (195)
.+..|++||++|+++||++ +++|+| |.||||+|+|++|...+.++++.|.++|+. .+.++||+||+++.
T Consensus 18 ~~~~g~tiLe~a~~~gi~i-------~~~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~ 88 (102)
T COG0633 18 AVNEGETLLEAAERNGIPI-------EYACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVK 88 (102)
T ss_pred eccCCcHHHHHHHHCCCcc-------eecCCC-CccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEEC
Confidence 5667999999999999999 588996 699999999999976788888889889883 57789999999995
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.66 E-value=6.1e-16 Score=116.13 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=63.1
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
|+|.. ..+ .+.+|+||||+|+++||.+ ++.|+ .|.||+|+++|++|...+... ..|.. +.+||
T Consensus 10 ~~~~~-~~~-~~~~g~tLLda~~~~Gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~~~-----~~l~~~~~~~g~ 74 (97)
T TIGR02008 10 PDGGE-ETI-ECPDDQYILDAAEEAGIDL-------PYSCR-AGACSTCAGKVEEGTVDQSDQ-----SFLDDDQMEAGY 74 (97)
T ss_pred CCCCE-EEE-EECCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCceEEEeCcEecCcc-----CCCCHHHHhCCe
Confidence 56653 333 7899999999999999999 57799 899999999999998654321 12322 36899
Q ss_pred EEeeeeEeeCCCCCccEEEeccC
Q 029333 154 RLACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~vvI~~lP 176 (195)
||+||+.+. ++++|+...
T Consensus 75 ~LaC~~~~~-----~di~v~~~~ 92 (97)
T TIGR02008 75 VLTCVAYPT-----SDCTIETHK 92 (97)
T ss_pred EEEeeCEEC-----CCeEEEecc
Confidence 999999996 789986543
No 7
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.65 E-value=9.6e-16 Score=112.41 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCC-CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTD 140 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~-GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~ 140 (195)
||.|+|. +.|.. + ++.+ |+|||++|+++||++ +++|+ .|.||+|++++++|++.......
T Consensus 1 ~~~v~~~-------~~~~~-~---~~~~~~~tlL~a~~~~gi~~-------p~~Cr-~G~Cg~C~~~~~sG~v~~~~~~~ 61 (84)
T PRK10713 1 MARVTLR-------ITGTQ-L---LCQDEHPSLLAALESHNVAV-------EYQCR-EGYCGSCRTRLVAGQVDWIAEPL 61 (84)
T ss_pred CCEEEEE-------eCCcE-E---EecCCCCcHHHHHHHcCCCC-------CCCCC-CeECCCCEeEEEeCeEecCCCcc
Confidence 7778772 34443 2 5665 599999999999999 57799 89999999999999876532211
Q ss_pred HHHhhcCCCCCCEEEeeeeEeeCCCCCccEEEe
Q 029333 141 KEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQ 173 (195)
Q Consensus 141 ~E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~ 173 (195)
....++++|+||+++. ++++|+
T Consensus 62 ------~~~~~g~~L~C~~~p~-----sd~~ie 83 (84)
T PRK10713 62 ------AFIQPGEILPCCCRAK-----GDIEIE 83 (84)
T ss_pred ------chhhCCEEEEeeCEEC-----CCEEEe
Confidence 1235799999999997 788875
No 8
>CHL00134 petF ferredoxin; Validated
Probab=99.64 E-value=1.9e-15 Score=114.19 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=59.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++..|+|||++|+++||.+ ++.|+ .|.||+|+++|++|...+... ..|.. ++++|+|+||+++.
T Consensus 20 ~~~~~~tLL~a~~~~Gi~i-------~~~C~-~G~Cg~C~v~v~~G~v~~~~~-----~~l~~~e~~~g~~L~C~~~~~- 85 (99)
T CHL00134 20 DCPDDVYILDAAEEQGIDL-------PYSCR-AGACSTCAGKVTEGTVDQSDQ-----SFLDDDQLEAGFVLTCVAYPT- 85 (99)
T ss_pred EECCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEEEEEeCccccCcc-----cCCCHHHHhCCeEEEeeCEEC-
Confidence 8999999999999999999 57799 999999999999998654321 12322 36799999999997
Q ss_pred CCCCccEEEecc
Q 029333 164 PDSTGLVVIQQL 175 (195)
Q Consensus 164 ~d~~G~vvI~~l 175 (195)
++++|+..
T Consensus 86 ----~d~~i~~~ 93 (99)
T CHL00134 86 ----SDCTILTH 93 (99)
T ss_pred ----CCeEEEec
Confidence 89999744
No 9
>PTZ00038 ferredoxin; Provisional
Probab=99.58 E-value=6.2e-15 Score=123.84 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=65.4
Q ss_pred cCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCC
Q 029333 75 LPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKN 152 (195)
Q Consensus 75 ~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g 152 (195)
+++|...+ ++.+|+||||+|+++||.+ ++.|+ .|.||+|+++|++|++... |...|+. +++|
T Consensus 102 ~~~g~~~~---~v~~geTILdAae~aGI~l-------p~sCr-~G~CGtCkvrV~~GeV~~~-----e~~~Ls~ee~~~G 165 (191)
T PTZ00038 102 TPDGEKVI---ECDEDEYILDAAERQGVEL-------PYSCR-GGSCSTCAAKLLEGEVDNE-----DQSYLDDEQLKKG 165 (191)
T ss_pred eCCCcEEE---EeCCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEeEEeecccccC-----ccccCCHHHhcCC
Confidence 35664322 7899999999999999999 57799 5999999999999986543 2233432 4689
Q ss_pred EEEeeeeEeeCCCCCccEEEeccCCcc
Q 029333 153 WRLACQTTVGTPDSTGLVVIQQLPEWK 179 (195)
Q Consensus 153 ~RLACQ~~v~s~d~~G~vvI~~lP~~~ 179 (195)
|||+||+++. +|++|+...+.+
T Consensus 166 ~~LaCqa~p~-----sDi~Ie~p~e~~ 187 (191)
T PTZ00038 166 YCLLCTCYPK-----SDCTIETHKEDE 187 (191)
T ss_pred EEEEeeCEEC-----CCeEEecCChHH
Confidence 9999999997 789997665543
No 10
>PLN03136 Ferredoxin; Provisional
Probab=99.58 E-value=1.2e-14 Score=117.86 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=63.8
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
++|.. .| ++.+|++|||+++++||.+ ++.|+ .|.||+|+++|++|.+.... ...|+. .++||
T Consensus 62 ~~~~~--~~-~~~~g~tILdAa~~~Gi~l-------p~sCr-~G~CGtC~~~l~~G~V~~~~-----~~~L~~~e~~~G~ 125 (148)
T PLN03136 62 PEGEQ--EV-ECEEDVYVLDAAEEAGIDL-------PYSCR-AGSCSSCAGKVVSGSIDQSD-----QSFLDDEQISEGY 125 (148)
T ss_pred CCCcE--EE-EeCCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEEEEecCcCccCc-----ccCCCHHHhcCCE
Confidence 55533 23 7899999999999999999 57799 99999999999999865432 122433 46899
Q ss_pred EEeeeeEeeCCCCCccEEEeccCC
Q 029333 154 RLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
+|+||+++. +|++|+.+.+
T Consensus 126 ~LaC~a~p~-----sD~~Ie~~~e 144 (148)
T PLN03136 126 VLTCVAYPT-----SDVVIETHKE 144 (148)
T ss_pred EEEeEeEEC-----CCcEEecCCh
Confidence 999999997 7899876544
No 11
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.56 E-value=1.5e-14 Score=132.00 Aligned_cols=93 Identities=29% Similarity=0.519 Sum_probs=71.9
Q ss_pred CCCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCC
Q 029333 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSR 138 (195)
Q Consensus 59 ~~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~ 138 (195)
...+++|+|. .++|.. ..+ ++.+|+|||++++++|+.+ ++.|+|.|.||+|+|+|.+|...+.
T Consensus 26 ~~~~~~v~v~------~~~~~~-~~~-~~~~g~tlL~a~~~~gi~i-------~~~C~g~G~Cg~C~v~v~~G~~~~~-- 88 (405)
T TIGR01941 26 LVSSGDITIG------INDDEE-KSI-TVPAGGKLLNTLASNGIFI-------SSACGGGGTCGQCRVRVVEGGGEIL-- 88 (405)
T ss_pred ccccccEEEE------EcCCCc-eEE-EECCCChHHHHHHHcCCCC-------cccCCCccEeCCCEEEEccCCcCCC--
Confidence 3456777773 345553 333 7899999999999999999 5779988999999999999976443
Q ss_pred CHHHHhhcCC--CCCCEEEeeeeEeeCCCCCccEEEec
Q 029333 139 TDKEKEKLKR--KPKNWRLACQTTVGTPDSTGLVVIQQ 174 (195)
Q Consensus 139 t~~E~~~L~~--~~~g~RLACQ~~v~s~d~~G~vvI~~ 174 (195)
..|...|+. ..+|+||+||+.+. ++++|+.
T Consensus 89 -~~~~~~L~~~~~~~g~rLaCq~~~~-----~d~~i~~ 120 (405)
T TIGR01941 89 -PTELSHFSKREAKEGWRLSCQVKVK-----QDMSIEI 120 (405)
T ss_pred -hhhhhhcCHhHhcCCcEEEeeCEEC-----CCEEEEE
Confidence 335566654 57899999999996 6777753
No 12
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.53 E-value=4.6e-14 Score=128.87 Aligned_cols=85 Identities=33% Similarity=0.593 Sum_probs=65.7
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+||||+++++|+.+ ++.|+|.|.||+|+|+|++|...+. ..|...|.. ..++|||+||+.+.
T Consensus 49 ~~~~g~tLL~a~~~~gi~i-------~~~C~g~G~CgtC~v~v~~G~~~~~---~~e~~~l~~~e~~~g~rLaCq~~~~- 117 (409)
T PRK05464 49 TVPAGGKLLGALASNGIFL-------SSACGGGGSCGQCRVKVKEGGGDIL---PTELSHISKREAKEGWRLSCQVKVK- 117 (409)
T ss_pred EECCCchHHHHHHHcCCCc-------ccCCCCccEeCCCEEEEecCCcCCC---hhhhhhcCHhhccCCcEEEeeCEEC-
Confidence 7899999999999999999 5779988999999999999986443 235556654 57899999999996
Q ss_pred CCCCccEEEeccCC-ccccceee
Q 029333 164 PDSTGLVVIQQLPE-WKGHEWKY 185 (195)
Q Consensus 164 ~d~~G~vvI~~lP~-~~~~~~~~ 185 (195)
++++|+...+ .....|..
T Consensus 118 ----~d~~ie~~~~~~~~~~~~~ 136 (409)
T PRK05464 118 ----QDMKIEVPEEIFGVKKWEC 136 (409)
T ss_pred ----CCEEEEECcccccceEEEE
Confidence 6677764322 23344544
No 13
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.52 E-value=9.7e-15 Score=136.85 Aligned_cols=99 Identities=37% Similarity=0.570 Sum_probs=82.3
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
||.|+| +|+|+. . + +.|.++|+++++.|+.+ .+.|||+|+||.|+|.|.+|...+...++.
T Consensus 1 ~p~v~f-------~psgkr-~---~-~~g~~il~aar~~gv~i-------~s~cggk~~cgkc~v~v~~g~~~i~s~~dh 61 (614)
T COG3894 1 MPLVTF-------MPSGKR-G---E-DEGTTILDAARRLGVYI-------RSVCGGKGTCGKCQVVVQEGNHKIVSSTDH 61 (614)
T ss_pred CceeEe-------ecCCCc-C---C-CCCchHHHHHHhhCceE-------eeecCCCccccceEEEEEeCCceeccchhH
Confidence 788888 588987 2 4 89999999999999999 699999999999999999998666555554
Q ss_pred HHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccCCccccceeecc
Q 029333 142 EKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLPEWKGHEWKYKK 187 (195)
Q Consensus 142 E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~~~~~~~~~~ 187 (195)
| .++. ..|||||||+.+. |+++|..+|+.+..+.++-|
T Consensus 62 ~-k~~~--~~g~rlac~~~v~-----gd~~i~ip~es~l~~q~v~k 99 (614)
T COG3894 62 E-KYLR--ERGYRLACQAQVL-----GDLVIFIPPESRLERQKVRK 99 (614)
T ss_pred H-HHHH--hhceeeeeehhhc-----CceEEEcCchhhHHHHHHHH
Confidence 4 3332 4599999999997 99999988888877766643
No 14
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.48 E-value=9.4e-14 Score=99.16 Aligned_cols=69 Identities=36% Similarity=0.572 Sum_probs=55.8
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|++||++++++|+.+ ++.|+ .|.||+|+|+|.+|...+.+. ..+.. ..+++||+||+.+.
T Consensus 13 ~~~~g~~ll~al~~~g~~~-------~~~C~-~g~Cg~C~v~v~~G~~~~~~~-----~~~~~~~~~~~~~LaC~~~~~- 78 (84)
T cd00207 13 EVPEGETLLDAAREAGIDI-------PYSCR-AGACGTCKVEVVEGEVDQSDP-----SLLDEEEAEGGYVLACQTRVT- 78 (84)
T ss_pred EECCCCcHHHHHHHcCCCc-------ccCCC-CcCCcCCEEEEeeCccccCcc-----cCCCHHHHhCCeEEEEeCeeC-
Confidence 7899999999999999998 57799 589999999999998765543 11211 35789999999995
Q ss_pred CCCCccEEE
Q 029333 164 PDSTGLVVI 172 (195)
Q Consensus 164 ~d~~G~vvI 172 (195)
++++|
T Consensus 79 ----~~i~v 83 (84)
T cd00207 79 ----DGLVI 83 (84)
T ss_pred ----CCcEE
Confidence 56665
No 15
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.47 E-value=6.4e-14 Score=124.76 Aligned_cols=84 Identities=32% Similarity=0.643 Sum_probs=68.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
.+++|.+||.+|..+||.+ ++.|||.|+||.|+|+|.+|.....| .|...+++ ..+||||+||+.+.
T Consensus 50 t~~aG~kLL~~L~~~gifi-------~SaCGGggsC~QCkv~v~~ggge~Lp---Te~sh~skrea~eG~RLsCQ~~Vk- 118 (410)
T COG2871 50 TVPAGGKLLGALASSGIFI-------SSACGGGGSCGQCKVRVKKGGGEILP---TELSHISKREAKEGWRLSCQVNVK- 118 (410)
T ss_pred ecCCchhHHHHHHhCCccc-------ccCCCCCccccccEEEEecCCCccCc---chhhhhhhhhhhccceEEEEeccc-
Confidence 6899999999999999999 58899999999999999998643222 35555554 47899999999997
Q ss_pred CCCCccEEEeccCC--ccccceee
Q 029333 164 PDSTGLVVIQQLPE--WKGHEWKY 185 (195)
Q Consensus 164 ~d~~G~vvI~~lP~--~~~~~~~~ 185 (195)
.++.|+ +|+ .....|.+
T Consensus 119 ----~dm~le-vpEe~fgvkkWec 137 (410)
T COG2871 119 ----HDMDLE-VPEEVFGVKKWEC 137 (410)
T ss_pred ----ccceee-chHHhcCccceeE
Confidence 677775 444 67788887
No 16
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.46 E-value=9.6e-14 Score=98.67 Aligned_cols=71 Identities=38% Similarity=0.643 Sum_probs=52.4
Q ss_pred CCCceEEeEecCCCch-HHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCE-
Q 029333 77 DGTPDIHFRTACGGQK-LRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNW- 153 (195)
Q Consensus 77 dG~~~v~~~~a~~Get-LLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~- 153 (195)
+|+. ++| ++.+|++ ||++|+++ |+.+ ++.|+| |.||+|+|+|.+|++ .......+.+.+ .+++
T Consensus 4 ~g~~-~~~-~~~~~~~~ll~~~~~~~gi~i-------~~~C~~-g~Cg~C~v~v~~G~~-~~~~~~~~~~~~---~~~~~ 69 (78)
T PF00111_consen 4 NGKG-VTV-EVPPGETLLLDALERAGGIGI-------PYSCGG-GGCGTCRVRVLEGEV-QSNETFLEDEEL---AEGGI 69 (78)
T ss_dssp TTEE-EEE-EEETTSBBHHHHHHHTTTTTS-------TTSSSS-SSSSTTEEEEEESEE-ETTTSSSHHHHH---HTTEE
T ss_pred CCeE-EEE-EeCCCccHHHHHHHHcCCCCc-------ccCCCC-CccCCcEEEEeeCcc-cCCcccCCHHHH---HcCCC
Confidence 4554 444 7899999 99999999 9999 578996 559999999999987 322222233333 2344
Q ss_pred EEeeeeEe
Q 029333 154 RLACQTTV 161 (195)
Q Consensus 154 RLACQ~~v 161 (195)
||+||+++
T Consensus 70 rLaCq~~~ 77 (78)
T PF00111_consen 70 RLACQTRV 77 (78)
T ss_dssp EEGGGSEE
T ss_pred cCCcEEEe
Confidence 89999987
No 17
>PRK05713 hypothetical protein; Provisional
Probab=99.46 E-value=1.8e-13 Score=120.58 Aligned_cols=71 Identities=27% Similarity=0.567 Sum_probs=57.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+||||+|+++||.+ ++.|+ .|.||+|+|+|++|...... ...|.. +.+++||+||+.+.
T Consensus 12 ~~~~g~tlL~a~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~~~~~~-----~~~l~~~~~~~g~~L~C~~~~~- 77 (312)
T PRK05713 12 SVPAGSNLLDALNAAGVAV-------PYSCR-AGSCHACLVRCLQGEPEDAL-----PEALAAEKREQGWRLACQCRVV- 77 (312)
T ss_pred EECCCCcHHHHHHHcCCCC-------CcCCC-CcCCCCCeEEEEeCccccCc-----cccCCHHHHhCCeEEEeECEEC-
Confidence 7899999999999999999 57799 79999999999999853211 122222 36789999999997
Q ss_pred CCCCccEEEec
Q 029333 164 PDSTGLVVIQQ 174 (195)
Q Consensus 164 ~d~~G~vvI~~ 174 (195)
+|++|+.
T Consensus 78 ----~d~~i~~ 84 (312)
T PRK05713 78 ----GDLRVEV 84 (312)
T ss_pred ----CceEEEe
Confidence 7888874
No 18
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.42 E-value=4.4e-13 Score=118.73 Aligned_cols=73 Identities=25% Similarity=0.434 Sum_probs=58.7
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+||||+|+++||.+ ++.|+ .|.||+|+|++++|...+... +...|.. +.++++|+||+++.
T Consensus 15 ~~~~g~tlL~a~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~~~~~~~---~~~~l~~~~~~~g~~L~C~~~~~- 82 (339)
T PRK07609 15 TAEPDETILDAALRQGIHL-------PYGCK-NGACGSCKGRLLEGEVEQGPH---QASALSGEERAAGEALTCCAKPL- 82 (339)
T ss_pred EeCCCCcHHHHHHHcCCCC-------CCCCC-CeECCCCEEEEEECcEecccc---cccCCCHHHHhCCcEEEeeCEEC-
Confidence 7899999999999999999 57799 899999999999998654321 2223322 35799999999997
Q ss_pred CCCCccEEEec
Q 029333 164 PDSTGLVVIQQ 174 (195)
Q Consensus 164 ~d~~G~vvI~~ 174 (195)
++++|+.
T Consensus 83 ----~d~~i~~ 89 (339)
T PRK07609 83 ----SDLVLEA 89 (339)
T ss_pred ----CCEEEEe
Confidence 7888863
No 19
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.42 E-value=6.9e-13 Score=118.37 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=62.1
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
++|.. +.+ ++.+|+||||+|+++|+.+ ++.|+ .|.||+|+++|++|....... +...|.. +.+++
T Consensus 10 ~~~~~-~~~-~~~~g~tlL~a~~~~g~~~-------p~~C~-~G~Cg~C~~~~~~G~~~~~~~---~~~~l~~~~~~~g~ 76 (340)
T PRK11872 10 ADGKT-LFF-PVGKDELLLDAALRNGINL-------PLDCR-EGVCGTCQGRCESGIYSQDYV---DEDALSERDLAQRK 76 (340)
T ss_pred cCCcE-EEE-EeCCCCcHHHHHHHcCCCC-------cCCCC-CeECCCCEEEEEeCccccCcc---ccccCCHHHHhCCe
Confidence 45654 444 7899999999999999999 57799 899999999999998643211 2223432 46899
Q ss_pred EEeeeeEeeCCCCCccEEEe
Q 029333 154 RLACQTTVGTPDSTGLVVIQ 173 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~vvI~ 173 (195)
+|+||+++. ++++|+
T Consensus 77 ~L~C~~~~~-----~d~~i~ 91 (340)
T PRK11872 77 MLACQTRVK-----SDAAFY 91 (340)
T ss_pred EEEeeCEEC-----CceEEE
Confidence 999999997 788886
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.31 E-value=1.4e-11 Score=109.75 Aligned_cols=73 Identities=29% Similarity=0.482 Sum_probs=56.2
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWR 154 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~R 154 (195)
+|.. +.+.++..|+|||++|+++||++ +++|+ .|.||+|++++++|.+.+.. ...|.. +.+|++
T Consensus 270 ~~~~-~~~~~~~~~~slL~~~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~v~~~~-----~~~l~~~~~~~g~~ 335 (352)
T TIGR02160 270 DGRS-TETSSLSRDESVLDAALRARPDL-------PFACK-GGVCGTCRAKVLEGKVDMER-----NYALEPDEVDAGYV 335 (352)
T ss_pred CCce-EEEEecCCCCcHHHHHHHcCCCC-------cCCCC-CccCCCCEEEEecccccccc-----ccCCCHHHHhCCcE
Confidence 4554 32236789999999999999999 57799 69999999999999876532 112222 357899
Q ss_pred EeeeeEeeC
Q 029333 155 LACQTTVGT 163 (195)
Q Consensus 155 LACQ~~v~s 163 (195)
|+||+++.+
T Consensus 336 l~C~~~~~~ 344 (352)
T TIGR02160 336 LTCQAYPLS 344 (352)
T ss_pred EEeeEEECC
Confidence 999999974
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.29 E-value=5.1e-12 Score=112.07 Aligned_cols=69 Identities=25% Similarity=0.504 Sum_probs=55.9
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++||++ ++.|+ .|.||+|++++++|.+..... ..|.. +++||+|+||+++.
T Consensus 261 ~~~~~~~lL~~~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~v~~~~~-----~~l~~~~~~~g~~l~C~~~~~- 326 (332)
T PRK10684 261 YAPVGTTLLEALESNKVPV-------VAACR-AGVCGCCKTKVVSGEYTVSST-----MTLTPAEIAQGYVLACSCHPQ- 326 (332)
T ss_pred EeCCCChHHHHHHHcCCCc-------cCCCC-CcCCCCCEEEEecCccccccc-----ccCCHHHHhCCcEEEeeCEEC-
Confidence 6789999999999999999 57799 999999999999998653311 12221 36899999999997
Q ss_pred CCCCccEEE
Q 029333 164 PDSTGLVVI 172 (195)
Q Consensus 164 ~d~~G~vvI 172 (195)
++++|
T Consensus 327 ----~d~~i 331 (332)
T PRK10684 327 ----GDLVL 331 (332)
T ss_pred ----CCeEE
Confidence 67765
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.54 E-value=1.4e-07 Score=80.80 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=54.7
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCcccCC
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGKELLG 136 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~~~l~ 136 (195)
|..|+|.+ ||.. + ++.+|+|||+||+++||.+ ++.|. +.|.|+.|+|+| +|.
T Consensus 1 m~~v~i~i-------dg~~-~---~~~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~V~v-~g~---- 57 (234)
T PRK07569 1 MSVKTLTI-------DDQL-V---SAREGETLLEAAREAGIPI-------PTLCHLDGLSDVGACRLCLVEI-EGS---- 57 (234)
T ss_pred CceEEEEE-------CCEE-E---EeCCCCHHHHHHHHcCCCC-------CcCcCCCCCCCCCccCCcEEEE-CCC----
Confidence 45566643 5655 3 7899999999999999999 45576 589999999998 443
Q ss_pred CCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 137 SRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 137 ~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.+.+.||++.+. +|+.+...-++
T Consensus 58 --------------~~~~~aC~t~v~----~Gm~v~t~~~~ 80 (234)
T PRK07569 58 --------------NKLLPACVTPVA----EGMVVQTNTPR 80 (234)
T ss_pred --------------CccccCcCCCCC----CCCEEEECCHH
Confidence 135668888886 36666544443
No 23
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.20 E-value=3.5e-06 Score=74.63 Aligned_cols=65 Identities=28% Similarity=0.588 Sum_probs=45.9
Q ss_pred CCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCc
Q 029333 89 GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTG 168 (195)
Q Consensus 89 ~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G 168 (195)
.|.|+||+|..-.-..+.+.+- .++|+ .|.||+|.+.| .|. -||||++.+. +..++
T Consensus 71 ~~~tVLd~L~~Ik~~~D~sLsf-r~sCr-~giCGsCam~I-NG~--------------------p~LAC~t~v~-~~~~~ 126 (276)
T PLN00129 71 CGPMVLDVLIKIKNEQDPSLTF-RRSCR-EGICGSCAMNI-DGK--------------------NTLACLTKID-RDESG 126 (276)
T ss_pred CCchHHHHHHHHHHcCCCCeEE-eccCC-CCCCCCCeeEE-CCc--------------------ccccccccHh-hcCCC
Confidence 3799999998744332222221 48899 89999999997 554 4899999994 33346
Q ss_pred cEEEeccCC
Q 029333 169 LVVIQQLPE 177 (195)
Q Consensus 169 ~vvI~~lP~ 177 (195)
.|+|+.++-
T Consensus 127 ~i~iePl~~ 135 (276)
T PLN00129 127 PTTITPLPH 135 (276)
T ss_pred cEEEEECCC
Confidence 788887754
No 24
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.18 E-value=1.2e-06 Score=64.00 Aligned_cols=61 Identities=38% Similarity=0.687 Sum_probs=38.7
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCC---------CceecCcEEEEecCcccCCCCCHHHHhhcC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAG---------GGTCGTCMVEVIEGKELLGSRTDKEKEKLK 147 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG---------~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~ 147 (195)
||+. + ++.+|+||++||+++||.+ | ..|.. .|.|+.|.|+|- |.
T Consensus 9 dG~~-v---~~~~G~til~al~~~gi~i--p-----~~c~~~~~r~~~~~~g~C~~C~Vev~-g~--------------- 61 (82)
T PF13510_consen 9 DGKP-V---EVPPGETILEALLAAGIDI--P-----RLCYHGRPRGGLCPIGSCRLCLVEVD-GE--------------- 61 (82)
T ss_dssp TTEE-E---EEEET-BHHHHHHHTT--B--------EETTTS-EEBSSSSSTT-SS-EEEES-SE---------------
T ss_pred CCEE-E---EEcCCCHHHHHHHHCCCeE--E-----EeeeccCcccccCCccccceEEEEEC-CC---------------
Confidence 5665 3 6789999999999999998 3 44552 599999999983 32
Q ss_pred CCCCCEEEeeeeEeeCCCCCccEEE
Q 029333 148 RKPKNWRLACQTTVGTPDSTGLVVI 172 (195)
Q Consensus 148 ~~~~g~RLACQ~~v~s~d~~G~vvI 172 (195)
....||++.+.. |+.+.
T Consensus 62 ----~~v~AC~t~v~~----GM~V~ 78 (82)
T PF13510_consen 62 ----PNVRACSTPVED----GMVVE 78 (82)
T ss_dssp ----EEEETTT-B--T----TEEEE
T ss_pred ----cceEcccCCCcC----CcEEE
Confidence 236999999973 66653
No 25
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.13 E-value=7.1e-06 Score=76.61 Aligned_cols=57 Identities=33% Similarity=0.620 Sum_probs=44.6
Q ss_pred ecCCCchHHHHHHH------CCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeee
Q 029333 86 TACGGQKLRDIMLN------SNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQT 159 (195)
Q Consensus 86 ~a~~GetLLdal~~------~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~ 159 (195)
++.+|+||||+|++ .++.+ .++|+ .|.||+|.|+| +|. .+|+|++
T Consensus 26 ~~~~~~tvl~al~~~~~~~~~~l~~-------~~~C~-~g~Cg~C~v~v-~G~--------------------~~laC~~ 76 (486)
T PRK06259 26 PVKEGMTVLDALEYINKTYDANIAF-------RSSCR-AGQCGSCAVTI-NGE--------------------PVLACKT 76 (486)
T ss_pred eCCCCChHHHHHHHhchhcCCCcee-------cCCCC-CCCCCCCEEEE-CCe--------------------Eeccccc
Confidence 56799999999996 44444 47899 89999999995 664 3789999
Q ss_pred EeeCCCCCccEEEeccC
Q 029333 160 TVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 160 ~v~s~d~~G~vvI~~lP 176 (195)
.+. ..++|+.++
T Consensus 77 ~~~-----~~~~i~~~~ 88 (486)
T PRK06259 77 EVE-----DGMIIEPLD 88 (486)
T ss_pred CCC-----CCCEEEecC
Confidence 996 347777653
No 26
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.06 E-value=4.5e-06 Score=83.06 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=52.3
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCcccCCCCCHHHHhhcCCCCC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPK 151 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~ 151 (195)
||.. + ++.+|+|||++++++||.+ ++.|. ..|.|+.|+|+|.+|... ...
T Consensus 7 dg~~-~---~~~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~v~v~~g~~~--------------~~~ 61 (847)
T PRK08166 7 DGKE-Y---EVNGADNLLEACLSLGIDI-------PYFCWHPALGSVGACRQCAVKQYQNPED--------------TRG 61 (847)
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCCC-------CccccCCCCCCCCccCCCeEEEeecCcc--------------CCC
Confidence 5665 3 6899999999999999999 57797 369999999999988421 124
Q ss_pred CEEEeeeeEeeCCCCCccEEE
Q 029333 152 NWRLACQTTVGTPDSTGLVVI 172 (195)
Q Consensus 152 g~RLACQ~~v~s~d~~G~vvI 172 (195)
++++||++.+. +|+.+.
T Consensus 62 ~~~~aC~~~v~----~gm~v~ 78 (847)
T PRK08166 62 RLVMSCMTPAT----DGTFIS 78 (847)
T ss_pred CcccCcCCCCC----CCCEEE
Confidence 68899998885 256554
No 27
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.05 E-value=3.7e-06 Score=65.24 Aligned_cols=68 Identities=26% Similarity=0.474 Sum_probs=47.0
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.++.|+|++|..-.-.+..+.+- .++|+ .|.||+|.++| .|. .+|||.+.+.. .
T Consensus 24 ~~~~~~tVLd~L~~Ik~~~D~sLaf-r~sCr-~giCGsCam~I-NG~--------------------~~LAC~t~v~~-~ 79 (110)
T PF13085_consen 24 PVEPGMTVLDALNYIKEEQDPSLAF-RYSCR-SGICGSCAMRI-NGR--------------------PRLACKTQVDD-L 79 (110)
T ss_dssp EGGSTSBHHHHHHHHHHHT-TT--B---SSS-SSSSSTTEEEE-TTE--------------------EEEGGGSBGGG-C
T ss_pred cCCCCCcHHHHHHHHHhccCCCeEE-EecCC-CCCCCCCEEEE-CCc--------------------eecceeeEchh-c
Confidence 6789999999998654333222221 48899 89999999997 554 49999999953 3
Q ss_pred CCc---cEEEeccCC
Q 029333 166 STG---LVVIQQLPE 177 (195)
Q Consensus 166 ~~G---~vvI~~lP~ 177 (195)
... .|+|+.++-
T Consensus 80 ~~~~~~~i~IePL~~ 94 (110)
T PF13085_consen 80 IEKFGNVITIEPLPN 94 (110)
T ss_dssp TTSETBEEEEEESTT
T ss_pred cCCCcceEEEEECCC
Confidence 222 488988865
No 28
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.82 E-value=4.1e-05 Score=66.51 Aligned_cols=69 Identities=28% Similarity=0.533 Sum_probs=50.6
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
+..+|.+|||+|..-.-..+.+.+- .++|+ .|.||+|.+.| .|. .||||.+.+. +-
T Consensus 25 ~~~~~~~vLdaL~~Ik~e~d~~Lsf-r~sCR-~gICGSCam~I-NG~--------------------prLAC~t~~~-~~ 80 (234)
T COG0479 25 PYDEGMTVLDALLYIKEEQDPTLSF-RRSCR-EGICGSCAMNI-NGK--------------------PRLACKTLMK-DL 80 (234)
T ss_pred cCCCCCcHHHHHHHHHHhcCCccch-hhhcc-CCcCCcceeEE-CCc--------------------cccchhchhh-hc
Confidence 4459999999998766444444442 58999 89999999997 553 3899999985 33
Q ss_pred CCccEEEeccCCc
Q 029333 166 STGLVVIQQLPEW 178 (195)
Q Consensus 166 ~~G~vvI~~lP~~ 178 (195)
..+.|+|+.++-.
T Consensus 81 ~~~~i~iePL~~f 93 (234)
T COG0479 81 EEGVITIEPLPNF 93 (234)
T ss_pred cCCceEEEECCCC
Confidence 3346888877753
No 29
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.82 E-value=9.8e-05 Score=66.55 Aligned_cols=68 Identities=25% Similarity=0.485 Sum_probs=49.6
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.+|+||||+|...++.+....+- ..+|+ .|.||+|.|+| +|. .+|||++.+.. .
T Consensus 24 ~~~~~~tvL~~l~~i~~~~d~tL~~-~~~c~-~~~Cg~C~v~i-nG~--------------------~~laC~t~v~~-~ 79 (329)
T PRK12577 24 EVEPGNTILDCLNRIKWEQDGSLAF-RKNCR-NTICGSCAMRI-NGR--------------------SALACKENVGS-E 79 (329)
T ss_pred ECCCCChHHHHHHHhCCcCCCCcEE-cCCCC-CCCCCCCEEEE-CCe--------------------eecCcccchhh-h
Confidence 6789999999999999998321111 26799 79999999998 553 36788888742 1
Q ss_pred C----------CccEEEeccCC
Q 029333 166 S----------TGLVVIQQLPE 177 (195)
Q Consensus 166 ~----------~G~vvI~~lP~ 177 (195)
+ .+.++|+.++-
T Consensus 80 ~~~~~~~~~~~~~~i~iePl~~ 101 (329)
T PRK12577 80 LARLSDSNSGAIPEITIAPLGN 101 (329)
T ss_pred hccccccccCCCCeEEEEECCC
Confidence 1 25678877654
No 30
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.80 E-value=2.9e-05 Score=67.41 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCCEEEEEeeeeeEcCCCC-----ceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccC
Q 029333 61 EPPVVNFAFVHSVLLPDGT-----PDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELL 135 (195)
Q Consensus 61 ~~p~V~~~~~~~~~~pdG~-----~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l 135 (195)
+|.+|+|.+.+ +.|+.. ...++ ++.+|.|||++|...+-.+...++- .+.|+ .|.||+|.|.|- |.
T Consensus 3 ~~~~v~~~i~R--~~~~~~~~~~~~~~~v-~~~~~~tvl~~L~~ik~~~d~~l~f-r~~C~-~giCGsC~v~In-G~--- 73 (244)
T PRK12385 3 EMKNLKIEVLR--YNPEVDTEPHSQTYEV-PYDETTSLLDALGYIKDNLAPDLSY-RWSCR-MAICGSCGMMVN-NV--- 73 (244)
T ss_pred CCcEEEEEEEe--eCCCCCCCceeEEEEe-eCCCCCcHHHHHHHHHHhcCCCcee-ccCCC-CCcCCCCcceEC-cc---
Confidence 56666665433 344321 11222 6679999999997654333211111 36899 799999999983 53
Q ss_pred CCCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 136 GSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 136 ~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.+|||++.+.. ..+.++|+.++.
T Consensus 74 -----------------~~laC~t~~~~--~~~~~~iePl~~ 96 (244)
T PRK12385 74 -----------------PKLACKTFLRD--YTGGMKVEALAN 96 (244)
T ss_pred -----------------ChhhHhhHHHH--cCCCeEEeeCCC
Confidence 27889888852 234577766643
No 31
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.80 E-value=1.8e-05 Score=68.54 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=49.5
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.++.||||+|..-.-..+.+.+- .++|+ .|.||+|.+.| .|. .+|||++.+.+ -
T Consensus 29 ~~~~~~tvLdaL~~Ik~~~D~sL~f-r~sCr-~giCGsCam~I-NG~--------------------~~LAC~t~v~~-~ 84 (239)
T PRK13552 29 EETPGMTLFIALNRIREEQDPSLQF-DFVCR-AGICGSCAMVI-NGR--------------------PTLACRTLTSD-Y 84 (239)
T ss_pred cCCCCCCHHHHHHHHHhcCCCCeeE-eccCC-CCCCCCceeEE-CCe--------------------EhhhhhccHhh-c
Confidence 5678999999998766443322221 48899 89999999997 554 48999999852 2
Q ss_pred CCccEEEeccCC
Q 029333 166 STGLVVIQQLPE 177 (195)
Q Consensus 166 ~~G~vvI~~lP~ 177 (195)
.+|.++|+.++-
T Consensus 85 ~~~~i~iePl~~ 96 (239)
T PRK13552 85 PDGVITLMPLPV 96 (239)
T ss_pred CCCcEEEEECCC
Confidence 235788887754
No 32
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.79 E-value=3.7e-05 Score=66.99 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=47.0
Q ss_pred ecCCCchHHHHHHHCCCc---c----cCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeee
Q 029333 86 TACGGQKLRDIMLNSNID---L----YGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQ 158 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~---l----~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ 158 (195)
++.++.||||+|..-.-. + ..+++- .++|+ .|.||+|.++| .|. -+|||+
T Consensus 28 ~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~f-r~sCr-~giCGsCam~I-NG~--------------------p~LAC~ 84 (249)
T PRK08640 28 PYRPNMNVISALMEIRRNPVNAKGEKTTPVVW-DMNCL-EEVCGACSMVI-NGK--------------------PRQACT 84 (249)
T ss_pred cCCCCCcHHHHHHHHHhcccccccccCCCeeE-ecccC-CCCCCcCeeEE-CCc--------------------cchhhh
Confidence 567899999999855321 0 011111 48899 89999999997 554 379999
Q ss_pred eEeeCCCCCccEEEeccCC
Q 029333 159 TTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 159 ~~v~s~d~~G~vvI~~lP~ 177 (195)
+.+. ++.+.|+|+.++-
T Consensus 85 t~v~--~~~~~i~iePl~~ 101 (249)
T PRK08640 85 ALID--QLEQPIRLEPMST 101 (249)
T ss_pred ChHH--HcCCcEEEEECCC
Confidence 9884 3456788887753
No 33
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.71 E-value=9.5e-05 Score=64.69 Aligned_cols=68 Identities=26% Similarity=0.468 Sum_probs=48.0
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.++.|||++|.+-+.....+.+- .++|+ .|.||+|.|.| +|. .+|||++.+..-+
T Consensus 25 ~~~~~~tvLd~L~~i~~~~d~~l~~-r~~C~-~g~CGsCa~~I-nG~--------------------p~laC~t~~~~~~ 81 (251)
T PRK12386 25 EVNEGEVVLDVIHRLQATQAPDLAV-RWNCK-AGKCGSCSAEI-NGR--------------------PRLMCMTRMSTFD 81 (251)
T ss_pred eCCCCCCHHHHHHHhccccCCCCcc-cCCCC-CCcCCCCEEEE-Ccc--------------------EeccHHhHHHHhC
Confidence 6789999999999977643222221 48899 89999999997 553 3899988875322
Q ss_pred CCccEEEeccC
Q 029333 166 STGLVVIQQLP 176 (195)
Q Consensus 166 ~~G~vvI~~lP 176 (195)
..+.++|+.++
T Consensus 82 ~~~~itiepl~ 92 (251)
T PRK12386 82 EDETVTVTPMR 92 (251)
T ss_pred CCCeEEEccCC
Confidence 22467776654
No 34
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.71 E-value=7.9e-05 Score=65.08 Aligned_cols=67 Identities=15% Similarity=0.309 Sum_probs=47.1
Q ss_pred cCCCchHHHHHHHCC----------CcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEe
Q 029333 87 ACGGQKLRDIMLNSN----------IDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLA 156 (195)
Q Consensus 87 a~~GetLLdal~~~G----------I~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLA 156 (195)
+.++.|+|++|..-. |.. .++|+ .|.||+|.++| .|...++ ...|||
T Consensus 27 ~~~~~tvLd~L~~Ik~~~~~~~~~~l~f-------r~sCr-~~iCGsCam~I-NG~p~~~--------------~~~~LA 83 (250)
T PRK07570 27 ISPDMSFLEMLDVLNEQLIEKGEEPVAF-------DHDCR-EGICGMCGLVI-NGRPHGP--------------DRGTTT 83 (250)
T ss_pred CCCCCcHHHHHHHHHHHhhccCCCCeeE-------ecccc-CCcCCcceeEE-CCccCCC--------------Ccccch
Confidence 458999999997432 333 58899 89999999996 6653322 234899
Q ss_pred eeeEeeCCCCCccEEEeccC
Q 029333 157 CQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 157 CQ~~v~s~d~~G~vvI~~lP 176 (195)
|++.+.+-...+.|+|+.++
T Consensus 84 C~t~~~~~~~~~~i~iePl~ 103 (250)
T PRK07570 84 CQLHMRSFKDGDTITIEPWR 103 (250)
T ss_pred hhhhhhhcCCCCeEEEEECC
Confidence 99987432112568888875
No 35
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.59 E-value=0.00049 Score=60.87 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=47.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCC-
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTP- 164 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~- 164 (195)
++.+|+|||++|...+..+....+. .++|+ .|.||.|.|.| +|. .+|||++.+..-
T Consensus 30 ~~~~~~tvLd~L~~i~~~~d~tl~~-~~~C~-~G~CgsC~v~I-NG~--------------------~~laC~t~v~~~~ 86 (279)
T PRK12576 30 KVDRFTQVTEALRRIKEEQDPTLSY-RASCH-MAVCGSCGMKI-NGE--------------------PRLACKTLVLDVA 86 (279)
T ss_pred ecCCCCHHHHHHHHhCCccCCCcee-cCCCC-CCCCCCCEEEE-CCc--------------------EeccccCcHHHhh
Confidence 6789999999999988765211111 37798 99999999998 553 367888887531
Q ss_pred -CCCccEEEeccC
Q 029333 165 -DSTGLVVIQQLP 176 (195)
Q Consensus 165 -d~~G~vvI~~lP 176 (195)
+....++|+.++
T Consensus 87 ~~~~~~~tiePl~ 99 (279)
T PRK12576 87 KKYNSVITIEPMD 99 (279)
T ss_pred cCCCCcEEEEECC
Confidence 112456777665
No 36
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.51 E-value=0.00066 Score=58.47 Aligned_cols=79 Identities=23% Similarity=0.390 Sum_probs=52.2
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
+.+|+|.+ +|.. +.+ ++.++++||++|++... +.+. ...|+ .|.||.|.| +++|.
T Consensus 49 ~~~i~~~V-------NG~~-~~~-~v~~~~tLLd~LR~~l~-ltGt----K~GC~-~G~CGACTV-lVdG~--------- 103 (217)
T PRK11433 49 ISPVTLKV-------NGKT-EQL-EVDTRTTLLDALREHLH-LTGT----KKGCD-HGQCGACTV-LVNGR--------- 103 (217)
T ss_pred CceEEEEE-------CCEE-EEE-ecCCCCcHHHHHHHhcC-CCCC----CCCCC-CCCcCceEE-EECCE---------
Confidence 34566644 3554 444 78999999999998532 2222 46799 899999999 55664
Q ss_pred HHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccC
Q 029333 142 EKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 142 E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP 176 (195)
...+|.+....-+.....+|+-+.
T Consensus 104 -----------~v~SCl~la~~~~G~~ItTiEGL~ 127 (217)
T PRK11433 104 -----------RLNACLTLAVMHQGAEITTIEGLG 127 (217)
T ss_pred -----------EeeeeeeehhhcCCCEEEEeCCcC
Confidence 255787776444444456666654
No 37
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.51 E-value=0.00023 Score=61.65 Aligned_cols=62 Identities=23% Similarity=0.430 Sum_probs=44.5
Q ss_pred CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCcc
Q 029333 90 GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGL 169 (195)
Q Consensus 90 GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G~ 169 (195)
+.|+|++|..-. ....+.+- .++|+ .|.||+|.+.| .|. .+|||++.+.+ ..+.
T Consensus 33 ~~tvld~L~~ik-~~d~~l~f-r~sCr-~giCGsCa~~i-NG~--------------------~~LaC~t~~~~--~~~~ 86 (235)
T PRK12575 33 DRMLLDVLGRVK-AQDETLSY-RRSCR-EGICGSDAMNI-NGR--------------------NGLACLTNMQA--LPRE 86 (235)
T ss_pred CCcHHHHHHHHH-hcCCCeee-eccCC-CCCCCCCeeEE-CCe--------------------EcchhhCcHhH--cCCC
Confidence 468999998754 33323221 48899 89999999997 553 48999999952 3456
Q ss_pred EEEeccCC
Q 029333 170 VVIQQLPE 177 (195)
Q Consensus 170 vvI~~lP~ 177 (195)
++|+.++.
T Consensus 87 i~iePl~~ 94 (235)
T PRK12575 87 IVLRPLPG 94 (235)
T ss_pred EEEeECCC
Confidence 88887754
No 38
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.50 E-value=0.0001 Score=62.57 Aligned_cols=66 Identities=32% Similarity=0.500 Sum_probs=44.8
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.+|+|||++|.+.+......++- ..+|+ .|.||+|.|+| +|. .+|||++.+..
T Consensus 20 ~~~~~~tvl~~l~~i~~~~~~~l~~-~~~C~-~g~Cg~C~v~v-nG~--------------------~~laC~t~v~~-- 74 (220)
T TIGR00384 20 PADEGMTVLDALNYIKDEQDPSLAF-RRSCR-NGICGSCAMNV-NGK--------------------PVLACKTKVED-- 74 (220)
T ss_pred eCCCCCcHHHHHHHHHHhcCCCcee-ecccC-CCCCCCCeeEE-CCE--------------------EhhhhhChHHH--
Confidence 6789999999999876322111111 47898 89999999986 553 36688888752
Q ss_pred CCcc--EEEeccCC
Q 029333 166 STGL--VVIQQLPE 177 (195)
Q Consensus 166 ~~G~--vvI~~lP~ 177 (195)
. |+ ++|+.++.
T Consensus 75 ~-g~~~~~iepl~~ 87 (220)
T TIGR00384 75 L-GQPVMKIEPLPN 87 (220)
T ss_pred c-CCCcEEEeeCCC
Confidence 1 33 67766654
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.50 E-value=0.00016 Score=70.17 Aligned_cols=73 Identities=26% Similarity=0.570 Sum_probs=53.7
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCcccCC
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGKELLG 136 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~~~l~ 136 (195)
|..|+|++ ||.. + ++.+|+||+++|+++|+.+ +..|. +.|.|+.|.|+| +|.
T Consensus 1 ~~~v~~~i-------dg~~-~---~~~~g~ti~~a~~~~g~~i-------p~~c~~~~~~~~g~C~~C~V~v-~g~---- 57 (652)
T PRK12814 1 MNTISLTI-------NGRS-V---TAAPGTSILEAAASAGITI-------PTLCFHQELEATGSCWMCIVEI-KGK---- 57 (652)
T ss_pred CCeEEEEE-------CCEE-E---EeCCcCcHHHHHHHcCCcc-------ccccCCCCCCCccccceeEEEE-CCC----
Confidence 45566643 5664 3 7899999999999999999 46676 379999999987 443
Q ss_pred CCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCccEEEecc
Q 029333 137 SRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQL 175 (195)
Q Consensus 137 ~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~l 175 (195)
.+...||++.+. +|+.+...-
T Consensus 58 --------------~~~~~aC~t~~~----~Gm~v~t~~ 78 (652)
T PRK12814 58 --------------NRFVPACSTAVS----EGMVIETEN 78 (652)
T ss_pred --------------cceecCcCCCCC----CCCEEEeCc
Confidence 124779999996 377665433
No 40
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.26 E-value=0.00042 Score=69.56 Aligned_cols=70 Identities=27% Similarity=0.517 Sum_probs=49.5
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEe
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLA 156 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLA 156 (195)
||.. + ++.+|+|||+++.++||.+ |.-=-...|...|.|+.|.|+| +|. ..+|
T Consensus 7 dG~~-v---~~~~G~til~aa~~~gi~i--P~lC~~~~~~~~G~Cr~C~VeV-~G~--------------------~~~A 59 (819)
T PRK08493 7 NGKE-C---EAQEGEYILNVARRNGIFI--PAICYLSGCSPTLACRLCMVEA-DGK--------------------RVYS 59 (819)
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCcc--ccccccCCCCCCccccceEEEE-CCE--------------------Eecc
Confidence 6765 3 7899999999999999999 3100013566679999999998 442 1568
Q ss_pred eeeEeeCCCCCccEEEeccCC
Q 029333 157 CQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 157 CQ~~v~s~d~~G~vvI~~lP~ 177 (195)
|++.+. +|+.+...-|+
T Consensus 60 C~t~v~----dGM~V~T~s~~ 76 (819)
T PRK08493 60 CNTKAK----EGMNILTNTPN 76 (819)
T ss_pred ccCCCC----CCCEEEecCHH
Confidence 888885 37766544444
No 41
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.21 E-value=0.00055 Score=58.60 Aligned_cols=67 Identities=25% Similarity=0.471 Sum_probs=44.1
Q ss_pred ecC-CCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCC
Q 029333 86 TAC-GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTP 164 (195)
Q Consensus 86 ~a~-~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~ 164 (195)
++. +|+|||++|.+.+-......+ -..+|+ .|.||+|.|.| +|. .+|||.+.+..-
T Consensus 23 ~~~~~~~tvl~~L~~~~~~~~~~l~-~~~~c~-~g~Cg~C~v~v-nG~--------------------~~laC~t~~~~~ 79 (232)
T PRK05950 23 DVDECGPMVLDALIKIKNEIDPTLT-FRRSCR-EGVCGSDAMNI-NGK--------------------NGLACITPISDL 79 (232)
T ss_pred CCCCCCCHHHHHHHHhCCccCCcce-eeCCCC-CCCCCCCEEEE-CCc--------------------CccchhChHhHc
Confidence 677 899999999999822110011 137897 79999999998 554 256777777421
Q ss_pred CCCccEEEeccC
Q 029333 165 DSTGLVVIQQLP 176 (195)
Q Consensus 165 d~~G~vvI~~lP 176 (195)
..+.++|+.+.
T Consensus 80 -~~~~~tiepl~ 90 (232)
T PRK05950 80 -KKGKIVIRPLP 90 (232)
T ss_pred -CCCeEEEEECC
Confidence 12446666554
No 42
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.19 E-value=0.00059 Score=61.17 Aligned_cols=54 Identities=24% Similarity=0.499 Sum_probs=41.2
Q ss_pred CCCCCEEEEEeeeeeEcCCCCceEEeEec-CCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecC
Q 029333 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTA-CGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEG 131 (195)
Q Consensus 59 ~~~~p~V~~~~~~~~~~pdG~~~v~~~~a-~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG 131 (195)
.+..|+|.+.+ ||.. + ++ ++|+|||+|++++||.| +.-|- -.|.|..|.|+| +|
T Consensus 63 ~~~~~~~~I~I-------DGk~-V---eV~~~G~TILeAAr~~GI~I-------PtLCy~~~L~p~G~CRlClVEV-eG 122 (297)
T PTZ00305 63 AEHKPRAIMFV-------NKRP-V---EIIPQEENLLEVLEREGIRV-------PKFCYHPILSVAGNCRMCLVQV-DG 122 (297)
T ss_pred hccCCceEEEE-------CCEE-E---EecCCCChHHHHHHHcCCCc-------CccccCCCCCCCCccceeEEEE-CC
Confidence 35677777743 5665 3 67 89999999999999999 46564 357899999998 44
No 43
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.15 E-value=0.00067 Score=67.57 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=39.6
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEE
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEV 128 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V 128 (195)
++|.+|++ ||.. + ++++|+|||+++..+||.+ ++-|. ..|.|.-|.|+|
T Consensus 2 ~~~v~~~i---------dg~~-~---~~~~g~til~aa~~~gi~i-------p~~C~~~~l~~~g~Cr~C~Vev 55 (797)
T PRK07860 2 PDLVTLTI---------DGVE-V---SVPKGTLVIRAAELLGIQI-------PRFCDHPLLDPVGACRQCLVEV 55 (797)
T ss_pred CceEEEEE---------CCEE-E---EeCCCChHHHHHHHcCCCC-------CeecCCCCCCCCcccCccEEEE
Confidence 45655555 6765 3 7899999999999999999 46674 479999999998
No 44
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.01 E-value=0.00085 Score=65.95 Aligned_cols=68 Identities=28% Similarity=0.497 Sum_probs=49.1
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCcccCCCCCHHHHhhcCCCCC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPK 151 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~ 151 (195)
||.. + ++++|+|||+|++++||.| +.-|- -.|.|..|.|+|..+..
T Consensus 7 dg~~-v---~v~~g~til~a~~~~gi~I-------P~lCy~~~l~~~g~Cr~ClVev~~~~~------------------ 57 (687)
T PRK09130 7 DGKE-I---EVPDGYTLLQACEAAGAEI-------PRFCYHERLSIAGNCRMCLVEVKGGPP------------------ 57 (687)
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCCc-------CcccCCCCCCCCCCCCCCEEEECCCCC------------------
Confidence 6765 3 7899999999999999999 57784 36899999999853211
Q ss_pred CEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 152 NWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 152 g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
...-||.+.+. +|+++...-|+
T Consensus 58 ~~~~sC~~~v~----~gm~v~T~s~~ 79 (687)
T PRK09130 58 KPVASCAMPVG----EGMVIFTNTPM 79 (687)
T ss_pred CcccccCCCCC----CCCEEEeCCHH
Confidence 12447777775 36666544443
No 45
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=96.94 E-value=0.00094 Score=65.97 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=48.4
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCC-----CceecCcEEEEecCcccCCCCCHHHHhhcCCCCC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAG-----GGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPK 151 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG-----~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~ 151 (195)
||+. + ++.+|+|||++++.+||.+ ++-|-- .|.|..|.|+| +|. .
T Consensus 7 dg~~-~---~~~~g~~il~a~~~~g~~i-------p~~c~~~~~~~~~~C~~C~v~v-~~~------------------~ 56 (776)
T PRK09129 7 DGKK-V---EVPEGSMVIEAADKAGIYI-------PRFCYHKKLSIAANCRMCLVEV-EKA------------------P 56 (776)
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCCC-------CcccCCCCCCCCCCcceeEEEE-CCC------------------C
Confidence 6765 3 7899999999999999999 466763 47899999998 332 1
Q ss_pred CEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 152 NWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 152 g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
..+.||.+.+. +|+.|...-|+
T Consensus 57 ~~~~aC~~~~~----~gm~v~t~~~~ 78 (776)
T PRK09129 57 KPLPACATPVT----DGMKVFTRSEK 78 (776)
T ss_pred CcCcccCCCCC----CCCEEEcCCHH
Confidence 23567877775 36666544443
No 46
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=96.80 E-value=0.0012 Score=63.42 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=50.1
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCcccCCCCCHHHHhhcCCCCC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPK 151 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~ 151 (195)
||.. + ++.+|+|||++++++||.+ ++-|. ..|.|..|.|+| +|.. .
T Consensus 4 dg~~-~---~~~~g~~il~a~~~~gi~i-------p~~C~~~~l~~~g~Cr~C~v~v-~g~~-----------------~ 54 (603)
T TIGR01973 4 DGKE-L---EVPKGTTVLQACLSAGIEI-------PRFCYHEKLSIAGNCRMCLVEV-EKFP-----------------D 54 (603)
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCCc-------cccCCCCCCCCCCccccCEEEE-CCCC-----------------C
Confidence 5665 3 7899999999999999999 57795 469999999998 3321 0
Q ss_pred CEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 152 NWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 152 g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
....||++.+. +|+++...-|+
T Consensus 55 ~~~~aC~~~~~----~gm~v~t~~~~ 76 (603)
T TIGR01973 55 KPVASCATPVT----DGMKISTNSEK 76 (603)
T ss_pred CcccccCCCCC----CCCEEEeCCHH
Confidence 13678888886 37776544443
No 47
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=96.60 E-value=0.0061 Score=50.26 Aligned_cols=52 Identities=25% Similarity=0.580 Sum_probs=39.0
Q ss_pred EEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCc
Q 029333 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 64 ~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~ 132 (195)
.|+|.+. |.. +++ ++.++++|++.|++.|+.- . ...|+ .|.||.|-|.| +|.
T Consensus 8 ~i~~~vN-------G~~-~~~-~~~~~~~Ll~~LR~~gltg--t----K~GC~-~G~CGACtVlv-dg~ 59 (159)
T PRK09908 8 TIECTIN-------GMP-FQL-HAAPGTPLSELLREQGLLS--V----KQGCC-VGECGACTVLV-DGT 59 (159)
T ss_pred eEEEEEC-------CEE-EEE-ecCCCCcHHHHHHHcCCCC--C----CCCcC-CCCCCCcEEEE-CCc
Confidence 4677543 554 455 7899999999999976532 2 57899 89999999997 553
No 48
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=96.52 E-value=0.009 Score=48.73 Aligned_cols=70 Identities=26% Similarity=0.457 Sum_probs=47.4
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++ ++.++++|++.|++. |+.= . ...|+ .|.||.|-|.| +|+ .+.
T Consensus 7 NG~~-~~~-~~~~~~~Ll~~LR~~lgltg--~----K~gC~-~G~CGACtVlv-dg~--------------------~v~ 56 (148)
T TIGR03193 7 NGRW-RED-AVADNMLLVDYLRDTVGLTG--T----KQGCD-GGECGACTVLV-DGR--------------------PRL 56 (148)
T ss_pred CCEE-EEe-ecCCCCcHHHHHHHhcCCCC--C----CCCCC-CCCCCCCEEEE-CCe--------------------Eee
Confidence 3554 444 789999999999984 5432 2 57899 89999999998 443 356
Q ss_pred eeeeEeeCCCCCccEEEeccC
Q 029333 156 ACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 156 ACQ~~v~s~d~~G~vvI~~lP 176 (195)
||...+..-+....++|+-+.
T Consensus 57 SCl~~~~~~~G~~V~TiEgl~ 77 (148)
T TIGR03193 57 ACSTLAHRVAGRKVETVEGLA 77 (148)
T ss_pred ccHhhHhhcCCCcEEEeCCCC
Confidence 676655433333456666654
No 49
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=96.20 E-value=0.0098 Score=58.93 Aligned_cols=66 Identities=27% Similarity=0.460 Sum_probs=47.7
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEe
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLA 156 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLA 156 (195)
||.. + +++.|+|||+|++++||+| ||==-...|+-.|.|.-|.|.+..+. .-+-|
T Consensus 7 DG~e-i---~v~~g~tvLqAa~~aGi~I--P~fCyh~~ls~~GaCRmClVEveg~~-------------------k~~~S 61 (693)
T COG1034 7 DGKE-I---EVPEGETVLQAAREAGIDI--PTFCYHPRLSIAGACRMCLVEVEGAP-------------------KLVAS 61 (693)
T ss_pred CCEE-E---ecCCCcHHHHHHHHcCCCC--CcccccCCCCcccceeEEEEEecCCC-------------------ccccc
Confidence 6765 3 7899999999999999999 43211234566789999999984432 24668
Q ss_pred eeeEeeCCCCCccEE
Q 029333 157 CQTTVGTPDSTGLVV 171 (195)
Q Consensus 157 CQ~~v~s~d~~G~vv 171 (195)
|.+.+. +|+++
T Consensus 62 C~tpv~----dGM~I 72 (693)
T COG1034 62 CATPVT----DGMVI 72 (693)
T ss_pred cccccC----CCeEE
Confidence 888775 36664
No 50
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.11 E-value=0.059 Score=44.02 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=34.3
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEG 131 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG 131 (195)
+|+. +++ .+.++++|++.|++. |+.- . ...|+ .|.||.|.|.| +|
T Consensus 9 NG~~-~~~-~~~~~~~Ll~~LR~~~~ltg--t----K~gC~-~G~CGACtVlv-dG 54 (151)
T TIGR03198 9 NGQA-WEV-AAVPTTRLSDLLRKELQLTG--T----KVSCG-IGRCGACSVLI-DG 54 (151)
T ss_pred CCEE-EEe-ecCCCcHHHHHHHhccCCCC--C----CCCCC-CCcCCccEEEE-CC
Confidence 4554 444 678999999999984 6654 2 46799 89999999998 44
No 51
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=94.60 E-value=0.1 Score=42.94 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=34.8
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCc
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~ 132 (195)
+|.. +++ ++.++.+|+++|++. |+.- + ...|+ .|.||.|-|.| +|+
T Consensus 9 NG~~-~~~-~~~p~~~Ll~~LRd~l~ltg--t----k~GC~-~g~CGACtVlv-DG~ 55 (156)
T COG2080 9 NGEP-VEL-DVDPRTPLLDVLRDELGLTG--T----KKGCG-HGQCGACTVLV-DGE 55 (156)
T ss_pred CCeE-EEE-EeCCCChHHHHHHHhcCCCC--c----CCCCC-CccCCceEEEE-CCe
Confidence 3554 554 789999999999954 4433 2 58899 99999999986 564
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=94.32 E-value=0.057 Score=54.30 Aligned_cols=44 Identities=34% Similarity=0.631 Sum_probs=36.3
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecCc
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEGK 132 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG~ 132 (195)
||+. + ++.+|+|+|+++.++||++ ++-|- --++|-+|.|. ++|.
T Consensus 11 dg~~-~---~v~~G~tiL~a~~~~gI~i-------P~iCy~~~l~pi~sCd~ClVE-idG~ 59 (978)
T COG3383 11 DGRS-I---EVEEGTTILRAANRNGIEI-------PHICYHESLGPIGSCDTCLVE-IDGK 59 (978)
T ss_pred CCeE-E---ecCCChHHHHHHHhcCCcc-------cceeccCCCCcccccceEEEE-ecCc
Confidence 5665 3 7899999999999999999 58885 24689999999 5665
No 53
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=94.08 E-value=0.099 Score=53.62 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=32.8
Q ss_pred CCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCc
Q 029333 78 GTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 78 G~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~ 132 (195)
|.. +++ ++.++++||+.|++ +.+.+. ...|.|.|.||.|-|.| +|.
T Consensus 9 g~~-~~~-~~~~~~~l~~~LR~--~~~~~~----k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 9 GAP-QEL-TVNPGENVQKLLFN--MGMHSV----RNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred CEE-EEE-ecCCCCCHHHHHHH--CCCCcc----ccCCCCcccCCCCEEEE-CCe
Confidence 544 454 78999999999999 444322 34444489999999997 443
No 54
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=91.87 E-value=0.23 Score=50.98 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCC-CCCCCceecCcEEEEecCc
Q 029333 78 GTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLS-NCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 78 G~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~-~CgG~G~CGTC~V~V~eG~ 132 (195)
|+. +++ ++.++++|++.|++.|+.- . .. .|+ .|.||.|-|.| +|.
T Consensus 5 g~~-~~~-~~~~~~~l~~~LR~~~l~~--~----k~~~c~-~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 5 GAP-QTL-ECKLGENVQTLLFNMGMHS--V----RNSDDG-FGFAGSDAILF-NGV 50 (951)
T ss_pred CEE-EEE-ecCCCCCHHHHHHHCCCCC--C----cCCCCC-cccCCCCEEEE-CCe
Confidence 444 444 7899999999999976542 1 23 576 89999999997 553
No 55
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.64 E-value=0.28 Score=51.97 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=52.8
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
|.|+|.+. |+. +....+.++++||+.|++. |+.= . ...|+ .|.||.|-|.|-. .. +.
T Consensus 1 ~~~~~~~N-------g~~-~~~~~~~~~~~ll~~LR~~~~l~g--t----k~gC~-~G~CGaCtV~~~~-~~---~~--- 58 (1330)
T TIGR02969 1 PELLFYVN-------GRK-VVEKNVDPETMLLPYLRKKLRLTG--T----KYGCG-GGGCGACTVMISR-YN---PS--- 58 (1330)
T ss_pred CcEEEEEC-------CEE-EEeccCCCCCcHHHHHHhhcCCCC--C----CCCcC-CCCCCCcEEEECC-cc---cc---
Confidence 45777543 554 2223689999999999974 5443 2 57799 8999999999842 11 00
Q ss_pred HHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccC
Q 029333 142 EKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 142 E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP 176 (195)
+ ..+ .-...-||...+..-+....++|+-+-
T Consensus 59 ~-~~~---~~~~v~sCl~~~~~~~g~~v~TvEgl~ 89 (1330)
T TIGR02969 59 T-KSI---RHHPVNACLTPICSLYGAAVTTVEGIG 89 (1330)
T ss_pred c-ccc---CCcEEehhHHHHHHhCCCEEEecCCcC
Confidence 0 001 112466777766543434456666553
No 56
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.40 E-value=0.26 Score=46.64 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=48.4
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++.++.++++|++.|+++ |+.= . ...|+ .|.||.|-|.|..-... . .+ .-...-
T Consensus 6 Ng~~-~~~~~~~~~~~ll~~lR~~~~l~g--~----k~gC~-~G~CGaCtv~~~~~~~~--------~-~~---~~~~v~ 65 (467)
T TIGR02963 6 NGET-VTLSDVDPTRTLLDYLREDAGLTG--T----KEGCA-EGDCGACTVVVGELVDG--------G-KL---RYRSVN 65 (467)
T ss_pred CCEE-EEeecCCCCCCHHHHHHHhcCCCC--C----CcccC-CCCCCceEEEEEecCCC--------C-cc---cceEEe
Confidence 3544 4432589999999999974 6543 2 57899 89999999998432100 0 00 012355
Q ss_pred eeeeEeeCCCCCccEEEeccC
Q 029333 156 ACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 156 ACQ~~v~s~d~~G~vvI~~lP 176 (195)
+|..-+..-+....++|+-+.
T Consensus 66 sCl~~~~~~~g~~i~TvEgl~ 86 (467)
T TIGR02963 66 ACIQFLPSLDGKAVVTVEDLR 86 (467)
T ss_pred hhhhhHHhcCCCEEEecCCCC
Confidence 676665543433456666554
No 57
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=89.60 E-value=0.55 Score=47.64 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=31.2
Q ss_pred ecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCc
Q 029333 86 TACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 86 ~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~ 132 (195)
++.++++|++.|++. |+.= . ...|+ .|.||.|-|.| +|+
T Consensus 11 ~~~~~~~l~~~lr~~~~~~~--~----k~gc~-~g~cgactv~~-dg~ 50 (848)
T TIGR03311 11 DVNEEKKLLEFLREDLRLTG--V----KNGCG-EGACGACTVIV-NGK 50 (848)
T ss_pred eCCCCCcHHHHHHHhcCCCc--C----CCCCC-CCCCCCcEEEE-CCe
Confidence 678999999999974 6542 2 47799 89999999998 553
No 58
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=86.76 E-value=3.5 Score=36.22 Aligned_cols=64 Identities=23% Similarity=0.489 Sum_probs=41.1
Q ss_pred CCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCc
Q 029333 89 GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTG 168 (195)
Q Consensus 89 ~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G 168 (195)
=|--+||||.+-.=+++-..+- .-+|+ .|.||.|...| .|. .-|||-+.+..++. -
T Consensus 75 CGpMvLDALiKIKnE~DptLTF-RRSCR-EGICGSCAMNI-~G~--------------------NtLACi~kId~n~s-K 130 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTF-RRSCR-EGICGSCAMNI-NGT--------------------NTLACICKIDQNES-K 130 (288)
T ss_pred cchHHHHHHHHhhcccCCceeh-hhhhh-ccccccceecc-CCC--------------------ceeEEEEeeccCCc-c
Confidence 4567999998766655322221 36799 89999999987 332 46888888865433 2
Q ss_pred cEEEeccC
Q 029333 169 LVVIQQLP 176 (195)
Q Consensus 169 ~vvI~~lP 176 (195)
...|-.+|
T Consensus 131 ~~kIyPLP 138 (288)
T KOG3049|consen 131 STKIYPLP 138 (288)
T ss_pred cceeecCc
Confidence 33343444
No 59
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.41 E-value=0.97 Score=38.43 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=27.0
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEec
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIE 130 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~e 130 (195)
.+.+++++.|++....+- ....|+ .|.||.|.+...+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~-~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLE-ERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEec-ccccCc-cceecccEEEeec
Confidence 467778889998542222 246677 8999999999865
No 60
>PLN00192 aldehyde oxidase
Probab=85.97 E-value=1.3 Score=47.13 Aligned_cols=44 Identities=18% Similarity=0.417 Sum_probs=33.4
Q ss_pred CCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 78 GTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 78 G~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
|+. +++.++.++.+||+.|++. |+.- . ...|+ .|.||.|-|.|.
T Consensus 12 g~~-~~~~~~~p~~~Ll~~LR~~~~ltg--t----K~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 12 GER-FELSSVDPSTTLLEFLRTQTPFKS--V----KLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred CEE-EEeccCCCCCcHHHHHHHhhCCCC--c----CCCCC-CCcCCCcEEEEe
Confidence 444 4332588999999999974 5543 2 57899 899999999984
No 61
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=84.82 E-value=4.2 Score=41.83 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=49.8
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCC---CCC-CCCCCCCCceecCcEEEEecCcccC
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGP---YAR-PLSNCAGGGTCGTCMVEVIEGKELL 135 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p---~s~-~~~~CgG~G~CGTC~V~V~eG~~~l 135 (195)
..-..|+|.| ||+. + ++.+|+||.-||+.+|+.+-+- |.+ +..-|. .|.|--|.|.|-.|...
T Consensus 8 ~~~~~~~~~~-------dg~~-~---~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~- 74 (985)
T TIGR01372 8 DRSRPLRFTF-------DGKS-Y---SGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQR- 74 (985)
T ss_pred CCCCeEEEEE-------CCEE-e---ecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCC-
Confidence 3344677755 4665 3 7899999999999999875311 111 125687 58899999999544210
Q ss_pred CCCCHHHHhhcCCCCCCEEEeeeeEee
Q 029333 136 GSRTDKEKEKLKRKPKNWRLACQTTVG 162 (195)
Q Consensus 136 ~~~t~~E~~~L~~~~~g~RLACQ~~v~ 162 (195)
.....||++.+.
T Consensus 75 ---------------~~~~~ac~~~~~ 86 (985)
T TIGR01372 75 ---------------EPNTRATTQELY 86 (985)
T ss_pred ---------------CCCccceeEEcc
Confidence 113568999886
No 62
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=82.86 E-value=0.66 Score=39.42 Aligned_cols=37 Identities=22% Similarity=0.554 Sum_probs=24.4
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEec
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIE 130 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~e 130 (195)
.+.+++.++|++.+-.. .....|| .|.||.|.|.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~-e~~m~cg-~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSL-ERRMKCG-IGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEE-cccccCc-CcccCcCCcccCC
Confidence 46677888887642111 1135677 9999999998544
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=81.42 E-value=1.3 Score=38.49 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=25.7
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
.+.+.+.+.|++++...-+ ...|| .|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~sle~-~M~CG-~G~C~~C~v~~ 229 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNP-IMVDG-TGMCGACRVTV 229 (281)
T ss_pred HHHHHHHhcCCCEEEECcc-cccCc-ccccceeEEEE
Confidence 3667788899975433322 57886 99999999975
No 64
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=80.59 E-value=1.3 Score=37.73 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=25.7
Q ss_pred hHHHHHHHCCCcccCCCCC-CCCCCCCCceecCcEEEE
Q 029333 92 KLRDIMLNSNIDLYGPYAR-PLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~-~~~~CgG~G~CGTC~V~V 128 (195)
.+.+.+.+.|++.+ .|. ....|| .|.|+.|.|+.
T Consensus 194 ~~~~~l~~~Gv~~~--~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTV--VSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEE--EEecccccCc-cceeeeEEEEe
Confidence 46677888999864 222 247788 99999999996
No 65
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=80.31 E-value=1 Score=37.72 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=26.0
Q ss_pred chHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 91 QKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 91 etLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
+.+.++|++.|++.. -+......|| .|.||.|.|...
T Consensus 180 ~~~~~~L~~~g~~~~-i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQ-FSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEE-EEecccccCc-CCCcCccEeccC
Confidence 457788888888532 1222246677 999999999974
No 66
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=77.97 E-value=1.3 Score=37.80 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=24.3
Q ss_pred chHHHHHHHCCCc---ccCCCCCCCCCCCCCceecCcEEE
Q 029333 91 QKLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVE 127 (195)
Q Consensus 91 etLLdal~~~GI~---l~~p~s~~~~~CgG~G~CGTC~V~ 127 (195)
+.+.++|.+.|++ ++.... ..-|.|.|.||.|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~--~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLE--RRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehh--hccccCCccccCcccC
Confidence 4578889999996 432221 2334449999999987
No 67
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=75.60 E-value=3.8 Score=29.79 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=22.1
Q ss_pred eEcCCCCceEEeEecCCCchHHHHHH----HCCCcc
Q 029333 73 VLLPDGTPDIHFRTACGGQKLRDIML----NSNIDL 104 (195)
Q Consensus 73 ~~~pdG~~~v~~~~a~~GetLLdal~----~~GI~l 104 (195)
+++|||...+ ..+.+|+||.|++. +.|+..
T Consensus 4 V~LPdg~~T~--V~vrpG~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 4 VILPDGSTTV--VPTRPGESIRDLLSGLCEKRGINY 37 (73)
T ss_pred EECCCCCeEE--EEecCCCCHHHHHHHHHHHcCCCh
Confidence 4689999865 48999999877664 445554
No 68
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=75.34 E-value=6.8 Score=37.09 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHH-HCCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIML-NSNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~-~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
+..|.|.+. |.. +.+..+.+..||||-|+ +.++.-- .-.|. .|-||.|-|-|
T Consensus 6 ~~~irf~lN-------~~~-~~l~~v~P~~TlLd~LR~d~~ltGt------KEGCA-EGDCGACTVlV 58 (493)
T COG4630 6 RNTIRFLLN-------GET-RVLSDVPPTTTLLDYLRLDRRLTGT------KEGCA-EGDCGACTVLV 58 (493)
T ss_pred cceeEEEec-------Cce-EEeecCCcchHHHHHHHHhcccccc------ccccc-CCCcCceEEEE
Confidence 567777432 443 33458899999999998 6776641 36798 89999999876
No 69
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=75.25 E-value=1.5 Score=38.30 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=28.3
Q ss_pred chHHHHHHHCCCc---ccCCCCCCCCCCCCCceecCcEEEEecC
Q 029333 91 QKLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVEVIEG 131 (195)
Q Consensus 91 etLLdal~~~GI~---l~~p~s~~~~~CgG~G~CGTC~V~V~eG 131 (195)
+.+.+.+.+.|++ ++...- ....|| .|.||.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~-~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLE-RRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEeh-hccccc-CcccCCCccCCCCc
Confidence 4578888899985 432211 258899 99999999996555
No 70
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=73.97 E-value=4.4 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=19.8
Q ss_pred eEcCCCCceEEeEecCCCchHHHHHHH
Q 029333 73 VLLPDGTPDIHFRTACGGQKLRDIMLN 99 (195)
Q Consensus 73 ~~~pdG~~~v~~~~a~~GetLLdal~~ 99 (195)
+.+|+|...+ ..+.+|+|++|+|..
T Consensus 4 V~LPng~~t~--V~vrpg~ti~d~L~~ 28 (72)
T cd01760 4 VYLPNGQRTV--VPVRPGMSVRDVLAK 28 (72)
T ss_pred EECcCCCeEE--EEECCCCCHHHHHHH
Confidence 3679999854 489999999988753
No 71
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=71.51 E-value=8.2 Score=37.91 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=37.9
Q ss_pred CCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----CCceecCcEEEEecC
Q 029333 61 EPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEVIEG 131 (195)
Q Consensus 61 ~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G~G~CGTC~V~V~eG 131 (195)
.+-+|.+ |. ||.. + .+.+|.|+|+|....|+++ +--|- =.|.|--|.|.|..-
T Consensus 29 ~~~~iev-fv------d~~~-v---~v~pg~tvlqac~~~gv~i-------prfcyh~rlsvagncrmclveveks 86 (708)
T KOG2282|consen 29 SPNKIEV-FV------DDQS-V---MVEPGTTVLQACAKVGVDI-------PRFCYHERLSVAGNCRMCLVEVEKS 86 (708)
T ss_pred CccceEE-EE------CCee-E---eeCCCcHHHHHHHHhCCCc-------chhhhhhhhhhccceeEEEEEeccC
Confidence 3456666 33 4554 3 5799999999999999999 34453 136788888888654
No 72
>PLN02906 xanthine dehydrogenase
Probab=70.67 E-value=4.2 Score=43.38 Aligned_cols=33 Identities=33% Similarity=0.659 Sum_probs=26.5
Q ss_pred CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 90 GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 90 GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
.++||+.|++ +.+.+. ...|+ .|.||.|-|.|-
T Consensus 1 ~~~ll~~LR~--~~l~g~----k~gC~-~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRD--LGLTGT----KLGCG-EGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHh--CCCCCC----CCCcC-CCCCCCeEEEEC
Confidence 3689999997 555444 58899 899999999986
No 73
>smart00455 RBD Raf-like Ras-binding domain.
Probab=68.52 E-value=7.2 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=18.9
Q ss_pred eEcCCCCceEEeEecCCCchHHHHHH
Q 029333 73 VLLPDGTPDIHFRTACGGQKLRDIML 98 (195)
Q Consensus 73 ~~~pdG~~~v~~~~a~~GetLLdal~ 98 (195)
+.+|+|+... + .+.+|+||.|+|.
T Consensus 4 v~LP~~~~~~-V-~vrpg~tl~e~L~ 27 (70)
T smart00455 4 VHLPDNQRTV-V-KVRPGKTVRDALA 27 (70)
T ss_pred EECCCCCEEE-E-EECCCCCHHHHHH
Confidence 3579999843 4 8999999988874
No 74
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=67.93 E-value=2.9 Score=26.73 Aligned_cols=19 Identities=42% Similarity=0.975 Sum_probs=14.1
Q ss_pred CCCCCCCceecCcEEEEecC
Q 029333 112 LSNCAGGGTCGTCMVEVIEG 131 (195)
Q Consensus 112 ~~~CgG~G~CGTC~V~V~eG 131 (195)
...|+ .|.|+.|.+...++
T Consensus 3 ~M~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 3 RMACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp --SSS-SSSS-TTEEECSST
T ss_pred cccCC-CcEeCCcEeeeecC
Confidence 36798 99999999998765
No 75
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=67.18 E-value=4.8 Score=33.76 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred hHHHHHHHC--CCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 92 KLRDIMLNS--NIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 92 tLLdal~~~--GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
.+.+.+.+. ++.++...- ....|+ .|.||.|.+...
T Consensus 192 ~~~~~l~~~g~~~~~~~s~~-~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 192 AVVEALDEWLQLIKASVSNN-SPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHHHHhhcCCceEEEECC-ccccCc-cccccceEEEeC
Confidence 455666665 444432211 246787 899999999853
No 76
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=66.63 E-value=3.1 Score=35.85 Aligned_cols=34 Identities=24% Similarity=0.578 Sum_probs=21.9
Q ss_pred hHHHHHHHCCCc---ccCCCCCCCCCCCCCceecCcEEE
Q 029333 92 KLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVE 127 (195)
Q Consensus 92 tLLdal~~~GI~---l~~p~s~~~~~CgG~G~CGTC~V~ 127 (195)
.+.+.|.+.|++ ++.-+. ....|| .|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~-~~m~cg-~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYE-RKMCCG-VGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEec-cceecc-CcCCCCcccC
Confidence 367778889984 221111 134555 9999999876
No 77
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=64.91 E-value=7.3 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=18.8
Q ss_pred eEcCCCCceEEeEecCCCchHHHHHHH
Q 029333 73 VLLPDGTPDIHFRTACGGQKLRDIMLN 99 (195)
Q Consensus 73 ~~~pdG~~~v~~~~a~~GetLLdal~~ 99 (195)
+.+|+|+..+ ..+.+|+|+.|+|..
T Consensus 5 v~LP~~q~t~--V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 5 VHLPNGQRTV--VQVRPGMTIRDALSK 29 (71)
T ss_dssp EEETTTEEEE--EEE-TTSBHHHHHHH
T ss_pred EECCCCCEEE--EEEcCCCCHHHHHHH
Confidence 3579999854 489999999888754
No 78
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=58.78 E-value=4.8 Score=34.70 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=22.7
Q ss_pred hHHHHHHHCCCc---ccCCCCCCCCCCCCCceecCcEEE
Q 029333 92 KLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVE 127 (195)
Q Consensus 92 tLLdal~~~GI~---l~~p~s~~~~~CgG~G~CGTC~V~ 127 (195)
.+.+.|++.|++ ++..+. ....|+ .|.||+|+|.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~-~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYE-RKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEec-ceeEcc-CcccCCcccC
Confidence 467788889985 221211 135666 9999999976
No 79
>PRK05802 hypothetical protein; Provisional
Probab=57.18 E-value=7.9 Score=34.73 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=22.1
Q ss_pred HHHHHHH--CCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 93 LRDIMLN--SNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 93 LLdal~~--~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
+.+.+.+ .||.++...- ....|| .|.||.|.|..
T Consensus 269 v~~~l~~~~~~i~~~~Sle-~~M~CG-~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNN-AKMCCG-EGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCC-CeeeCc-CccCCeeEEEE
Confidence 4555555 6876521111 136677 99999999996
No 80
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=54.17 E-value=11 Score=37.40 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.4
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
.+.+.+.+.|++.+...- ....|| .|.||.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle-~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLN-TIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCc-ccccCc-ccccCcceeEe
Confidence 356778888987632221 147786 99999999963
No 81
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=49.40 E-value=21 Score=38.01 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEG 131 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG 131 (195)
.|+. ++...++++.||+.-|++ ...+.+. ...|+ .|.||.|.|.|..-
T Consensus 8 NG~~-~~~~~vdP~~TL~~fLR~-k~~ltgt----KlgC~-EGGCGaCtv~ls~~ 55 (1257)
T KOG0430|consen 8 NGKR-VEVELLPPDLTLNTFLRE-KLGLTGT----KLGCG-EGGCGACTVVLSKY 55 (1257)
T ss_pred CCEE-eeEecCCcchhHHHHHHH-hcCCcce----eeccC-CCCccceEEEEecc
Confidence 3544 444467888888887755 4444332 47799 79999999998664
No 82
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=46.51 E-value=18 Score=37.34 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.1
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
.+.+.+.+.|++.+...-+ .+.|+ .|.||.|.|.+.
T Consensus 861 av~~~l~~~Gv~~~vSlE~-~M~CG-~G~C~~C~v~~~ 896 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNS-IMVDA-TGMCGACMVPVT 896 (944)
T ss_pred HHHHHHHHcCCCeEEeecc-cccCC-CeeeCeeeeeee
Confidence 3567778889885222111 47797 999999999853
No 83
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=45.44 E-value=18 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.4
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
.+.+++.+.||+.+...- ..+.|+ .|.||.|+|.+
T Consensus 195 av~~~~~~~gi~~~vSle-~~M~cG-~G~Cg~C~v~~ 229 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLN-AIMVDG-TGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHHCCCcEEECCh-hheeCc-cceeCCCEeee
Confidence 355667788984322111 147787 99999999975
No 84
>PRK01777 hypothetical protein; Validated
Probab=45.00 E-value=61 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=23.0
Q ss_pred cCCCCceEEeEecCCCchHHHHHHHCCCccc
Q 029333 75 LPDGTPDIHFRTACGGQKLRDIMLNSNIDLY 105 (195)
Q Consensus 75 ~pdG~~~v~~~~a~~GetLLdal~~~GI~l~ 105 (195)
.|+......+ ++++|.|+.|++...||...
T Consensus 12 ~~~~~~~~~l-~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 12 LPERQYLQRL-TLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred CCCceEEEEE-EcCCCCcHHHHHHHcCCCcc
Confidence 3554443444 88999999999999999763
No 85
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=41.23 E-value=31 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=18.3
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHC
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNS 100 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~ 100 (195)
.+|..+..+ .++.+|++|.|++.++
T Consensus 5 ~LPnqQrT~--V~vrpG~tl~daL~Ka 29 (74)
T cd01816 5 FLPNKQRTV--VNVRPGMTLRDALAKA 29 (74)
T ss_pred ECCCCCeEE--EEecCCcCHHHHHHHH
Confidence 467766533 3899999998887654
No 86
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=39.52 E-value=35 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=22.4
Q ss_pred cCCCCceEEeEecCCCchHHHHHHHCCCcc
Q 029333 75 LPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (195)
Q Consensus 75 ~pdG~~~v~~~~a~~GetLLdal~~~GI~l 104 (195)
.|+....+.+ ++++|.|+.+|+...||.-
T Consensus 9 ~p~~q~~~~l-~vp~GtTv~~Ai~~Sgi~~ 37 (84)
T PF03658_consen 9 LPERQVILTL-EVPEGTTVAQAIEASGILE 37 (84)
T ss_dssp ETTCEEEEEE-EEETT-BHHHHHHHHTHHH
T ss_pred CCCeEEEEEE-ECCCcCcHHHHHHHcCchh
Confidence 4666665554 8999999999999999974
No 87
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=1.9e+02 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHH
Q 029333 94 RDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEK 143 (195)
Q Consensus 94 Ldal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~ 143 (195)
.-||+++||++. .-.||.|-+.+.+|..-+.|....|+
T Consensus 115 clALvDaGIpl~------------~mfcai~~~~~~d~~lv~Dpt~~qek 152 (217)
T KOG1069|consen 115 CLALVDAGIPLR------------SMFCAISCALHEDGVLVLDPTAKQEK 152 (217)
T ss_pred HHHHHhcCCchH------------HhhhhceEEEecCccEEECCcHHhhh
Confidence 357899999992 45567888888888655555433333
No 88
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=34.03 E-value=49 Score=24.36 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.8
Q ss_pred eEcCCCCceEEeEecCCCchHHHHHH
Q 029333 73 VLLPDGTPDIHFRTACGGQKLRDIML 98 (195)
Q Consensus 73 ~~~pdG~~~v~~~~a~~GetLLdal~ 98 (195)
+.+|+|.. +.+ .+.+|+|++|.|.
T Consensus 4 V~lPn~~~-~~v-~vrp~~tv~dvLe 27 (77)
T cd01818 4 VCLPDNQP-VLT-YLRPGMSVEDFLE 27 (77)
T ss_pred EECCCCce-EEE-EECCCCCHHHHHH
Confidence 35799998 434 6899999999885
No 89
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=23.75 E-value=81 Score=21.24 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=21.9
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHCCCcc
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~GI~l 104 (195)
++|||.. . +++.|.|.+|++..-+-.+
T Consensus 4 ~lpdG~~-~---~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 4 YLPDGSI-K---ELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EETTSCE-E---EEETTBBHHHHHHHHSHHH
T ss_pred ECCCCCe-e---eCCCCCCHHHHHHHHCHHH
Confidence 4599987 3 5799999999999877666
No 90
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.69 E-value=2.3e+02 Score=20.14 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcc
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l 104 (195)
.+||.|++ .++.+.+++....=+.+++.-+.+.++..++|++.
T Consensus 29 ~~~~~V~w--~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 29 AEMPGVQW--LRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred hhcCCeEE--EEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 45677777 45556666554232348888899999999999987
Done!