Query 029333
Match_columns 195
No_of_seqs 174 out of 1308
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 99.9 2E-22 6.7E-27 157.5 8.8 103 58-178 17-124 (126)
2 3lxf_A Ferredoxin; iron, iron- 99.9 8.6E-22 2.9E-26 148.2 9.8 97 63-177 1-102 (104)
3 2bt6_A Adrenodoxin 1; rutheniu 99.9 3.6E-22 1.2E-26 150.2 7.6 98 59-173 3-106 (108)
4 2y5c_A Adrenodoxin-like protei 99.9 6.4E-22 2.2E-26 149.2 8.3 101 60-178 3-107 (109)
5 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 2.6E-21 8.9E-26 146.6 10.1 99 62-177 1-102 (113)
6 3n9z_C Adrenodoxin; cytochrome 99.8 3.2E-22 1.1E-26 155.6 0.7 103 59-177 2-108 (123)
7 1xlq_A Putidaredoxin, PDX; [2F 99.8 2.9E-20 9.8E-25 139.2 10.5 97 63-177 1-103 (106)
8 1uwm_A Ferredoxin VI, FDVI; el 99.8 2.7E-20 9.2E-25 139.3 9.0 97 63-177 1-103 (106)
9 1i7h_A Ferredoxin; 2Fe-2S,elec 99.8 6.5E-20 2.2E-24 138.6 9.8 99 62-177 1-102 (111)
10 1b9r_A Protein (terpredoxin); 99.8 2.2E-20 7.6E-25 139.6 4.4 91 75-177 7-103 (105)
11 2wlb_A ETP1-FD, electron trans 99.8 1.5E-19 5.3E-24 134.5 8.9 87 76-173 11-101 (103)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 3.4E-19 1.2E-23 131.0 8.8 84 76-171 7-91 (93)
13 1frr_A Ferredoxin I; electron 99.7 5.7E-17 2E-21 118.4 6.6 81 76-177 9-91 (95)
14 1a70_A Ferredoxin; iron-sulfur 99.7 4.1E-17 1.4E-21 120.5 5.0 74 86-177 17-92 (97)
15 1awd_A Ferredoxin; electron tr 99.7 8.4E-17 2.9E-21 118.0 6.1 81 76-177 8-90 (94)
16 1frd_A Heterocyst [2Fe-2S] fer 99.7 1.4E-16 4.8E-21 117.3 6.5 73 86-176 19-93 (98)
17 1czp_A Ferredoxin I; [2Fe-2S] 99.7 1.6E-16 5.6E-21 117.3 6.8 74 86-177 19-94 (98)
18 1wri_A Ferredoxin II, ferredox 99.7 7.6E-17 2.6E-21 118.2 4.9 72 86-176 16-89 (93)
19 1iue_A Ferredoxin; electron tr 99.6 8.2E-17 2.8E-21 119.1 4.3 74 86-177 17-92 (98)
20 1jq4_A Methane monooxygenase c 99.6 2.4E-17 8.4E-22 121.6 0.5 89 62-174 4-94 (98)
21 1krh_A Benzoate 1,2-dioxygenas 99.6 1.2E-15 4.2E-20 132.5 6.6 93 62-176 3-97 (338)
22 3zyy_X Iron-sulfur cluster bin 99.5 3.2E-15 1.1E-19 142.8 5.8 90 62-179 3-94 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.5 5.9E-15 2E-19 115.1 5.6 86 60-173 25-114 (128)
24 2pia_A Phthalate dioxygenase r 99.4 3.1E-13 1.1E-17 117.3 8.3 74 76-173 244-320 (321)
25 1t3q_A Quinoline 2-oxidoreduct 98.2 1.6E-06 5.4E-11 70.0 5.9 57 77-163 17-74 (168)
26 2bs2_B Quinol-fumarate reducta 98.2 3.2E-06 1.1E-10 70.6 7.0 67 86-176 29-95 (241)
27 1kf6_B Fumarate reductase iron 98.1 6.2E-06 2.1E-10 68.8 7.1 66 86-176 29-94 (243)
28 2wdq_B Succinate dehydrogenase 98.0 1.6E-05 5.3E-10 66.2 7.6 67 86-176 26-95 (238)
29 3i9v_3 NADH-quinone oxidoreduc 97.9 1E-05 3.5E-10 78.4 6.6 69 77-162 7-88 (783)
30 3vr8_B Iron-sulfur subunit of 97.9 3.7E-05 1.3E-09 66.9 8.8 91 60-177 31-128 (282)
31 1rm6_C 4-hydroxybenzoyl-COA re 97.8 2.8E-05 9.7E-10 62.4 5.1 68 77-176 10-80 (161)
32 1n62_A Carbon monoxide dehydro 97.7 5E-05 1.7E-09 61.5 6.2 70 77-176 11-81 (166)
33 2h88_B Succinate dehydrogenase 97.7 5.7E-05 1.9E-09 63.7 6.8 67 86-177 36-104 (252)
34 1ffv_A CUTS, iron-sulfur prote 97.7 5.6E-05 1.9E-09 61.0 6.0 70 77-176 11-81 (163)
35 3c8y_A Iron hydrogenase 1; dit 97.7 5.1E-05 1.7E-09 71.3 6.2 55 77-162 7-67 (574)
36 3hrd_D Nicotinate dehydrogenas 97.1 0.00082 2.8E-08 54.1 6.2 69 77-175 11-80 (160)
37 1dgj_A Aldehyde oxidoreductase 96.3 0.0031 1.1E-07 62.4 5.2 71 77-176 9-80 (907)
38 1vlb_A Aldehyde oxidoreductase 96.3 0.0033 1.1E-07 62.2 5.2 77 63-176 2-80 (907)
39 3nvw_A Xanthine dehydrogenase/ 94.9 0.042 1.4E-06 44.3 5.7 73 86-176 18-91 (164)
40 2w3s_A Xanthine dehydrogenase; 94.5 0.041 1.4E-06 50.6 5.4 76 77-177 8-83 (462)
41 1y56_A Hypothetical protein PH 89.3 0.28 9.5E-06 44.3 3.9 54 62-128 13-66 (493)
42 3unc_A Xanthine dehydrogenase/ 85.5 0.82 2.8E-05 47.1 5.2 45 77-129 11-56 (1332)
43 2gag_A Heterotetrameric sarcos 85.4 1.2 4.1E-05 43.9 6.2 58 60-129 18-79 (965)
44 3zyv_A AOH1; oxidoreductase, m 82.4 1.6 5.5E-05 44.9 5.8 52 64-130 9-61 (1335)
45 1ep3_B Dihydroorotate dehydrog 69.7 2.3 7.8E-05 34.7 2.3 35 92-129 205-239 (262)
46 1c1y_B Proto-onkogene serine/t 57.3 8 0.00027 27.4 2.9 25 74-100 7-31 (77)
47 1wxm_A A-RAF proto-oncogene se 56.3 15 0.00053 26.4 4.4 25 74-100 13-37 (86)
48 2l05_A Serine/threonine-protei 54.7 9.1 0.00031 28.1 2.9 25 74-100 23-47 (95)
49 3ny5_A Serine/threonine-protei 52.4 8 0.00028 28.5 2.4 42 74-130 19-60 (96)
50 1rrb_A RAF-1 RBD, RAF proto-on 44.6 15 0.00052 27.5 2.8 25 74-100 24-48 (107)
51 3u7z_A Putative metal binding 33.8 65 0.0022 23.5 4.8 38 61-104 5-42 (101)
52 1xn7_A Hypothetical protein YH 28.2 27 0.00091 24.1 1.8 30 92-125 35-65 (78)
53 2hj1_A Hypothetical protein; s 24.9 37 0.0013 24.5 2.1 39 61-104 11-49 (97)
54 2k02_A Ferrous iron transport 22.4 38 0.0013 24.0 1.7 30 92-124 35-64 (87)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.87 E-value=2e-22 Score=157.45 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCc-ccC
Q 029333 58 AAEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELL 135 (195)
Q Consensus 58 ~~~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l 135 (195)
.+..||+|+| +.++|.. .++ ++.+|+|||++|+++||+ + ++.|+|.|.||+|+|+|.+|+ ..+
T Consensus 17 ~~~~M~~Vt~------~~~~G~~-~~v-~~~~G~tLL~aa~~~gi~gi-------~~~C~G~G~CgtC~v~v~~G~~~~l 81 (126)
T 3hui_A 17 RGSHMAKINF------VDHTGET-RTV-EVEEGATVMEAAIRNAIPGV-------EAECGGACACATCHVYVDEAWREKV 81 (126)
T ss_dssp TTCSEEEEEE------ECTTSCE-EEE-EEETTSBHHHHHHTTTCTTC-------CCTTSSSSCCSTTEEEECGGGHHHH
T ss_pred CCCCceEEEE------EeCCCCE-EEE-EECCCCcHHHHHHHcCCCCC-------ccCCCCCCCCCCCEEEECCCccccc
Confidence 3578999999 2367864 334 789999999999999999 9 578999999999999999997 447
Q ss_pred CCCCHHHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCCc
Q 029333 136 GSRTDKEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 178 (195)
Q Consensus 136 ~~~t~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~ 178 (195)
+++++.|.++|+. +.++||||||+++. .|++| ++| .+|+.
T Consensus 82 ~~~~~~E~~~L~~~~e~~~g~RLaCQ~~~~-~dldg-l~V-~lp~~ 124 (126)
T 3hui_A 82 GGPSPMEEDMLDFGYDVRPNSRLSCQIKVS-NELDG-LIV-TTPER 124 (126)
T ss_dssp CCCCHHHHHHHTTSSSCCTTEEEGGGCBCC-GGGTT-EEE-ECCSC
T ss_pred CCCCHHHhhhcCchhhccCCeEEeeeCEEC-cCCCc-EEE-EecCc
Confidence 8889999999973 57899999999995 45554 555 46653
No 2
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.86 E-value=8.6e-22 Score=148.23 Aligned_cols=97 Identities=29% Similarity=0.453 Sum_probs=79.2
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCcc-cCCCCCH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGKE-LLGSRTD 140 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~-~l~~~t~ 140 (195)
++|+| +.++|.. ..+ ++.+|+|||++|+++||+ + ++.|+|.|.||+|+|+|.+|+. .++++++
T Consensus 1 ~~vt~------~~~~G~~-~~~-~~~~g~tll~a~~~~gi~~i-------~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~ 65 (104)
T 3lxf_A 1 TAILV------TTRDGTR-TEI-QAEPGLSLMEALRDAGIDEL-------LALCGGCCSCATCHVLVAPAFADRLPALSG 65 (104)
T ss_dssp CEEEE------ECTTSCE-EEE-ECCTTSBHHHHHHHTTCTTC-------CCTTCSSSSCSTTEEEECGGGGGGSCCCCH
T ss_pred CEEEE------EeCCCCE-EEE-EECCCChHHHHHHHcCCCCC-------CcCCCCCCCCCCCEEEECCcccccCCCCCH
Confidence 46777 3578876 334 899999999999999999 9 5789999999999999999974 5788899
Q ss_pred HHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 141 KEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 141 ~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.|.++|+. +.++|||+||+++. .|++|.++ .+|+
T Consensus 66 ~e~~~L~~~~~~~~g~rLaCq~~~~-~dl~gl~v--~ip~ 102 (104)
T 3lxf_A 66 DENDLLDSSDHRTPHSRLSCQITIN-DKLEGLEV--EIAP 102 (104)
T ss_dssp HHHHHHHTSTTCCTTEEEGGGCBCC-GGGTTCEE--EECC
T ss_pred HHHHHhccccccCCCcEEEeeCEEc-cCCCCEEE--EecC
Confidence 99999964 57899999999994 55655544 4554
No 3
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.86 E-value=3.6e-22 Score=150.18 Aligned_cols=98 Identities=24% Similarity=0.406 Sum_probs=78.5
Q ss_pred CCCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCC--CCCCCCceecCcEEEEecCc-ccC
Q 029333 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPL--SNCAGGGTCGTCMVEVIEGK-ELL 135 (195)
Q Consensus 59 ~~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~--~~CgG~G~CGTC~V~V~eG~-~~l 135 (195)
+..|++|+|. .++|.. .++ ++.+|+|||++|+++||++ + +.|+|.|.||||+|+|.+|+ ..+
T Consensus 3 ~~~m~~V~~~------~~~g~~-~~v-~~~~g~tLL~aa~~~gi~i-------~~~~~Cgg~G~CgtC~v~v~~g~~~~l 67 (108)
T 2bt6_A 3 SGDKITVHFI------NRDGET-LTT-KGKIGDSLLDVVVQNNLDI-------DGFGACEGTLACSTCHLIFEQHIFEKL 67 (108)
T ss_dssp --CEEEEEEE------CTTSCE-EEE-EEETTCBHHHHHHHTTCCC-------TTTTTTSSSSSBSTTEEECCHHHHTTS
T ss_pred CCceEEEEEE------CCCCCE-EEE-EECCCChHHHHHHHcCCCC-------CcccCCCCCcCcCCCEEEECccccccC
Confidence 4678888882 367874 334 7899999999999999999 5 77999999999999999995 457
Q ss_pred CCCCHHHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEe
Q 029333 136 GSRTDKEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQ 173 (195)
Q Consensus 136 ~~~t~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~ 173 (195)
++++++|.++|+. +.++||||||+++. .|+++ ++|+
T Consensus 68 ~~~~~~E~~~L~~~~~~~~g~rLaCq~~~~-~d~d~-~~V~ 106 (108)
T 2bt6_A 68 EAITDEENDMLDLAYGLTDRSRLGCQICLT-KAMDN-MTVR 106 (108)
T ss_dssp CCCCHHHHHHHTTCTTCCTTEEEGGGCBCC-GGGTT-EEEE
T ss_pred CCCCHHHHHHHhCcccCCCCcEeeEEEEec-CCCCC-EEEE
Confidence 8889999999974 68899999999995 34433 5553
No 4
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=149.23 Aligned_cols=101 Identities=27% Similarity=0.450 Sum_probs=80.5
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCc-ccCCCC
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLGSR 138 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~~~ 138 (195)
.+|++|+| +.++|.. .++ ++..|+|||++++++||++ ++.|+|.|.||+|+|+|.+|+ ..++++
T Consensus 3 ~~m~~v~~------~~~~g~~-~~~-~~~~g~tlL~aa~~~gi~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~ 67 (109)
T 2y5c_A 3 SDVVNVVF------VDRSGQR-IPV-SGRVGDNVLHLAQRHGVDL-------EGACEASLACSTCHVYVSEDHLDLLPPP 67 (109)
T ss_dssp CCEEEEEE------ECTTSCE-EEE-EEETTCBHHHHHHHTTCCC-------CCTTSSSSSCCTTEEEECHHHHTTSCCC
T ss_pred CCcEEEEE------EcCCCCE-EEE-EECCCCcHHHHHHHcCCCC-------CcCCCCCcCcCccEEEECCcchhhcCCC
Confidence 35778887 3467875 333 7899999999999999999 578998899999999999996 456788
Q ss_pred CHHHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCCc
Q 029333 139 TDKEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 178 (195)
Q Consensus 139 t~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~ 178 (195)
++.|.++|+. +.+|||||||+++. .|++| ++| .+|++
T Consensus 68 ~~~E~~~L~~~~~~~~g~rLaCq~~~~-~d~~~-~~v-~ip~~ 107 (109)
T 2y5c_A 68 EEREDDMLDMAPLLQENSRLGCQIVLT-PELEG-AEF-TLPKI 107 (109)
T ss_dssp CHHHHHHHHTSTTCCTTEEEGGGCBCC-GGGTT-CEE-ECCSC
T ss_pred CHHHHHHHhccccCCCCcEeeEEeEEe-cCCCe-EEE-EecCC
Confidence 9999999973 68999999999995 34444 455 46653
No 5
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.85 E-value=2.6e-21 Score=146.56 Aligned_cols=99 Identities=26% Similarity=0.492 Sum_probs=79.3
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
||+|+|. ...-+.|+|.. + ++.+|+|||++|+++||.+ ++.|+|.|.||+|+|+|++|...++++++.
T Consensus 1 M~~vt~~-~~~g~~~~~~~---v-~~~~g~tlL~aa~~~Gi~i-------~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~ 68 (113)
T 3ah7_A 1 MPLVTFL-PHEKFCPEGLT---V-EVKPGTNILELAHDHHIEM-------ESACGGVKACTTCHCIVRKGFDSLEEADEL 68 (113)
T ss_dssp CCEEEEC-CBTTTBTTCEE---E-ECCTTCBHHHHHHHTTCCC-------CCTTCSSSSCSTTEEEEEESGGGSCCCCHH
T ss_pred CCEEEEE-cCCCcCCCCeE---E-EECCCCcHHHHHHHcCCCC-------CcCCCCCCCcCCCEEEEcCCcccCCCCCHH
Confidence 8899993 21112234443 3 7899999999999999999 577998999999999999998788888999
Q ss_pred HHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 142 EKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 142 E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
|..+|+. +.++|||+||+++.+ ++++|+ +|+
T Consensus 69 e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~-~~~ 102 (113)
T 3ah7_A 69 EEDMLDKAWGLEAQSRLGCQVFVAD----EDLTIE-IPK 102 (113)
T ss_dssp HHHHHTTSTTCCTTEEEGGGCBCCS----SCEEEE-CCS
T ss_pred HHHhhhcccccCCCcEEeeeCEEeC----CCEEEE-ECc
Confidence 9999973 578999999999952 478885 444
No 6
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.83 E-value=3.2e-22 Score=155.58 Aligned_cols=103 Identities=27% Similarity=0.499 Sum_probs=25.2
Q ss_pred CCCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecC-cccCCC
Q 029333 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEG-KELLGS 137 (195)
Q Consensus 59 ~~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG-~~~l~~ 137 (195)
..+|++|+| +.++|.. .++ ++..|+|||++++++||++.+ .+.|+|.|.||||+|+|.+| ...+++
T Consensus 2 ~~~~v~Vtf------~~~~G~~-~~v-~~~~G~tLl~aa~~~gi~i~g-----~~~CgG~g~CgtC~v~v~~~~~~~l~~ 68 (123)
T 3n9z_C 2 SEDKITVHF------INRDGET-LTT-KGKVGDSLLDVVVENNLDIDG-----FGACEGTLACSTCHLIFEDHIYEKLDA 68 (123)
T ss_dssp ------------------------------------------------------CTTCSSSSCSTTBC------------
T ss_pred CCCcEEEEE------EeCCCCE-EEE-EECCCCcHHHHHHHcCCCCCc-----CCCCCCCCEeCCCeeEEeccccccCCC
Confidence 357888888 3467865 233 789999999999999999921 17799999999999999964 567888
Q ss_pred CCHHHHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 138 RTDKEKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 138 ~t~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
+++.|.++|+. +.++||||||+++. ++++| ++|+ +|+
T Consensus 69 ~~~~E~~~L~~~~~~~~~~RLaCQ~~v~-~~ld~-l~V~-ip~ 108 (123)
T 3n9z_C 69 ITDEENDMLDLAYGLTDRSRLGCQICLT-KSMDN-MTVR-VPE 108 (123)
T ss_dssp --CHHHHHHCC--------CBCC--------------------
T ss_pred CChHHHhhhcccccccCCeEEeeEeEEc-cCCCC-EEEE-ECc
Confidence 89999999974 57899999999994 55544 5554 554
No 7
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.83 E-value=2.9e-20 Score=139.18 Aligned_cols=97 Identities=26% Similarity=0.500 Sum_probs=77.0
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCc-ccCCCCCH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLGSRTD 140 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~~~t~ 140 (195)
|+|+| +.++|.. .++ ++.+|+|||++|+++||+ + ++.|+|.|.||+|+|+|.+|+ ..++++++
T Consensus 1 ~~V~~------~~~~g~~-~~~-~~~~g~tlLeaa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~ 65 (106)
T 1xlq_A 1 SKVVY------VSHDGTR-REL-DVADGVSLMQAAVSNGIYDI-------VGDCGGSASCATCHVYVNEAFTDKVPAANE 65 (106)
T ss_dssp CEEEE------ECTTSCE-EEE-ECCTTCBHHHHHHHTTCTTS-------CCTTCSSSSSCTTEEEECTTTGGGSCCCCH
T ss_pred CEEEE------EeCCCCE-EEE-EECCCCcHHHHHHHcCCCCC-------CcCCCCCcccCcCEEEECCcccccCCCCCH
Confidence 46666 2467854 334 899999999999999999 9 588998999999999999995 45778888
Q ss_pred HHHhhcCC---C-CCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 141 KEKEKLKR---K-PKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 141 ~E~~~L~~---~-~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.|.++|+. . .+++||+||+++. .|++ +++|+ +|+
T Consensus 66 ~e~~~L~~~~~~~~~g~rLaCq~~~~-~d~~-~l~v~-~p~ 103 (106)
T 1xlq_A 66 REIGMLESVTAELKPNSRLCCQIIMT-PELD-GIVVD-VPD 103 (106)
T ss_dssp HHHHHHTTCSSCCCTTEEEGGGCBCC-GGGT-TEEEE-CCS
T ss_pred HHHHHhhcccccCCCCcEeeeeeEee-cCCC-CEEEE-ecC
Confidence 89999975 4 7899999999995 3332 46664 554
No 8
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.82 E-value=2.7e-20 Score=139.32 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=76.8
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCc-ccCCCCCH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLGSRTD 140 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~~~t~ 140 (195)
|+|+| +.++|.. .++ ++.+|+|||++|+++||+ + ++.|+|.|.||+|+|+|.+|+ ..++++++
T Consensus 1 ~~v~~------~~~~g~~-~~~-~~~~g~tlL~aa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~ 65 (106)
T 1uwm_A 1 AKIIF------IEHNGTR-HEV-EAKPGLTVMEAARDNGVPGI-------DADCGGACACSTCHAYVDPAWVDKLPKALP 65 (106)
T ss_dssp CEEEE------ECTTCCE-EEE-ECCTTSBHHHHHHTTTCTTC-------CCTTSSSSSSCTTEEEECHHHHTTSCCCCH
T ss_pred CEEEE------EeCCCCE-EEE-EECCCCcHHHHHHHcCCCCc-------ccCCCCCCCcCcCEEEECCcccccCCCCCH
Confidence 45666 2467854 334 899999999999999999 9 578998999999999999996 45778889
Q ss_pred HHHhhcCC---CC-CCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 141 KEKEKLKR---KP-KNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 141 ~E~~~L~~---~~-~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.|.++|+. +. ++|||+||+++. .|++ +++|+ +|+
T Consensus 66 ~e~~~L~~~~~~~~~g~rLaCq~~~~-~d~~-~l~v~-~p~ 103 (106)
T 1uwm_A 66 TETDMIDFAYEPNPATSRLTCQIKVT-SLLD-GLVVH-LPE 103 (106)
T ss_dssp HHHHHHTTSSSCCTTTEEEGGGCBCC-GGGT-TEEEE-CCS
T ss_pred HHHHHhcCccccCCCCcEecccCEEc-cCCC-CEEEE-ecC
Confidence 99999975 45 899999999995 3332 46664 554
No 9
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.81 E-value=6.5e-20 Score=138.63 Aligned_cols=99 Identities=28% Similarity=0.495 Sum_probs=77.9
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
||+|+|.. ..-+.++|.. + ++.+|+|||++|+++||.+ ++.|+|.|.||+|+|+|.+|.+.+.++++.
T Consensus 1 M~~i~~~~-~~g~~~~~~~---~-~~~~g~tlL~a~~~~gi~i-------~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~ 68 (111)
T 1i7h_A 1 MPKIVILP-HQDLCPDGAV---L-EANSGETILDAALRNGIEI-------EHACEKSCACTTCHCIVREGFDSLPESSEQ 68 (111)
T ss_dssp -CEEEECC-BTTTBTTCEE---E-ECCTTCBHHHHHHHTTCCC-------CCTTSSSSCCSTTEEEEEECGGGSCCCCHH
T ss_pred CCEEEEEe-CCCcCCCCeE---E-EeCCCCcHHHHHHHcCCCC-------cccCCCCCcCCCCEEEEccCcccCCCCCHH
Confidence 78999932 1112234443 3 7899999999999999999 577988999999999999999888888898
Q ss_pred HHhhcCC---CCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 142 EKEKLKR---KPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 142 E~~~L~~---~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
|..+|+. ..+++||+||+++.+ ++++|+ +|+
T Consensus 69 e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~-~~~ 102 (111)
T 1i7h_A 69 EDDMLDKAWGLEPESRLSCQARVTD----EDLVVE-IPR 102 (111)
T ss_dssp HHHHHTTCTTCCTTEEETTTCBCCS----SCEEEE-CCS
T ss_pred HHHHhhhccccCCCcEEEEEEEEeC----CCEEEE-ECh
Confidence 9998874 568999999999942 578885 444
No 10
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.80 E-value=2.2e-20 Score=139.57 Aligned_cols=91 Identities=22% Similarity=0.482 Sum_probs=73.1
Q ss_pred cCCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCc-ccCCCCCHHHHhhcC--C--
Q 029333 75 LPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGK-ELLGSRTDKEKEKLK--R-- 148 (195)
Q Consensus 75 ~pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~-~~l~~~t~~E~~~L~--~-- 148 (195)
.++|.. .++ ++.+|+|||++|+++||+ + ++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+ .
T Consensus 7 ~~~g~~-~~~-~~~~g~tlL~aa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~ 77 (105)
T 1b9r_A 7 DEQSGE-YAV-DAQDGQSLMEVATQNGVPGI-------VAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEP 77 (105)
T ss_dssp CTTTSC-EEE-ECCTTCCTTHHHHHHTCCCC-------CCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCC
T ss_pred eCCCCE-EEE-EECCCChHHHHHHHcCCCCc-------CcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhccccc
Confidence 367854 334 899999999999999999 9 578999999999999999996 446777888888987 2
Q ss_pred CCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 149 KPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 149 ~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
+.++|||+||+++. .+++ +++|+ +|+
T Consensus 78 ~~~g~rLaCq~~~~-~~~~-~l~v~-~p~ 103 (105)
T 1b9r_A 78 MTAGTRLSCQVFID-PSMD-GLIVR-VPL 103 (105)
T ss_dssp CCTTBSCGGGCCCC-TTST-TEEEE-CCS
T ss_pred CCCCcEeeeeCEec-CCCC-cEEEE-ecC
Confidence 67899999999995 3333 46664 443
No 11
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.5e-19 Score=134.55 Aligned_cols=87 Identities=30% Similarity=0.517 Sum_probs=71.3
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcc-cCCCCCHHHHhhcCC---CCC
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKE-LLGSRTDKEKEKLKR---KPK 151 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~-~l~~~t~~E~~~L~~---~~~ 151 (195)
++|.. .++ ++.+|+|||++|+++||.+ ++.|+|.|.||+|+|+|.+|+. .++++++.|.++|+. ..+
T Consensus 11 ~~g~~-~~~-~~~~g~tlL~a~~~~gi~i-------~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 11 PEGRE-IMI-EGNEGDSILDLAHANNIDL-------EGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp TTCCE-EEE-EECTTCBHHHHHHHTTCCC-------CCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred CCCCE-EEE-EECCCCHHHHHHHHcCCCc-------CcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 57754 333 7899999999999999999 5779999999999999999974 467788999999975 578
Q ss_pred CEEEeeeeEeeCCCCCccEEEe
Q 029333 152 NWRLACQTTVGTPDSTGLVVIQ 173 (195)
Q Consensus 152 g~RLACQ~~v~s~d~~G~vvI~ 173 (195)
++||+||+++. .|++| ++|+
T Consensus 82 g~rLaCq~~~~-~d~~~-l~v~ 101 (103)
T 2wlb_A 82 TSRLGCQVLLR-KDLDG-IRVR 101 (103)
T ss_dssp TEEEGGGCBCC-GGGTT-EEEE
T ss_pred CcEeeEeeEeC-CCCCc-EEEE
Confidence 99999999995 33333 6664
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.79 E-value=3.4e-19 Score=130.96 Aligned_cols=84 Identities=29% Similarity=0.546 Sum_probs=71.5
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCc-ccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWR 154 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~-l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~R 154 (195)
++|.. .++ ++.+|+|||++|+++|+. + ++.|+|.|.||+|+|+|.+|. ++++++.|.++|+.+.++||
T Consensus 7 ~~g~~-~~~-~~~~g~tll~a~~~~gi~gi-------~~~C~G~G~Cg~C~v~v~~g~--~~~~~~~e~~~L~~~~~g~r 75 (93)
T 1l5p_A 7 KGGVK-KQL-KFEDDQTLFTVLTEAGLMSA-------DDTCQGNKACGKCICKHVSGK--VAAAEDDEKEFLEDQPANAR 75 (93)
T ss_dssp ETTEE-EEE-ECCTTEEHHHHHHTTTSSCC-------TTSCSSSSSSCCCEEEEEESC--CCCCCHHHHHHHTTSCTTEE
T ss_pred eCCcE-EEE-EECCCChHHHHHHHcCCCcC-------CcCCCCcCCcCCCEEEECCCc--CCCCCHHHHHHhcCCCCCcE
Confidence 35664 334 889999999999999999 8 578999999999999999985 56677888889987789999
Q ss_pred EeeeeEeeCCCCCccEE
Q 029333 155 LACQTTVGTPDSTGLVV 171 (195)
Q Consensus 155 LACQ~~v~s~d~~G~vv 171 (195)
|+||+++ ..|++|+++
T Consensus 76 LaCq~~~-~~d~~g~~v 91 (93)
T 1l5p_A 76 LACAITL-SGENDGAVF 91 (93)
T ss_dssp EGGGCEE-CGGGTTCEE
T ss_pred EeeECEE-CCCCCceEE
Confidence 9999999 567888765
No 13
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.67 E-value=5.7e-17 Score=118.45 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=62.3
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
++|. .++ ++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+|.+|..... |...|.. +++++
T Consensus 9 ~~g~--~~~-~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----~~~~L~~~~~~~g~ 72 (95)
T 1frr_A 9 PSGE--FTL-DVPEGTTILDAAEEAGYDL-------PFSCR-AGACSSCLGKVVSGSVDES-----EGSFLDDGQMEEGF 72 (95)
T ss_dssp TTEE--EEE-EECTTCCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECT-----TCCSCCHHHHHTTE
T ss_pred CCCc--EEE-EeCCCCcHHHHHHHcCCCC-------CCCCC-CcCCCCCEEEEEeCCcccc-----ccccCCHHHHhCCc
Confidence 5672 233 7899999999999999999 57798 8999999999999975432 2233332 35789
Q ss_pred EEeeeeEeeCCCCCccEEEeccCC
Q 029333 154 RLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
||+||+++. ++++|+..++
T Consensus 73 ~LaC~~~~~-----~~~~v~~~~~ 91 (95)
T 1frr_A 73 VLTCIAIPE-----SDLVIETHKE 91 (95)
T ss_dssp EETTTCEES-----SCEEEECCCT
T ss_pred EEeeECEEC-----CCEEEEEcch
Confidence 999999996 6788865443
No 14
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.67 E-value=4.1e-17 Score=120.46 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=59.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+|++|..... |...|+. +++|+||+||+++.
T Consensus 17 ~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~e~~~g~~LaCq~~~~- 82 (97)
T 1a70_A 17 QCPDDVYILDAAEEEGIDL-------PYSCR-AGSCSSCAGKLKTGSLNQD-----DQSFLDDDQIDEGWVLTCAAYPV- 82 (97)
T ss_dssp EEETTSCHHHHHHHTTCCC-------CCSSS-SSCSSTTEEEEEESCEECT-----TCCSSCHHHHHHTEEEGGGCEES-
T ss_pred EeCCCCcHHHHHHHcCCCc-------ccCCC-CcCCCCCeEEEccCCcCcc-----ccccCCHHHhhCCeEEEeECEEC-
Confidence 7899999999999999999 57798 9999999999999975432 2334432 35789999999996
Q ss_pred CCCCccEEEeccCC
Q 029333 164 PDSTGLVVIQQLPE 177 (195)
Q Consensus 164 ~d~~G~vvI~~lP~ 177 (195)
++++|+..++
T Consensus 83 ----~d~~v~~~~~ 92 (97)
T 1a70_A 83 ----SDVTIETHKK 92 (97)
T ss_dssp ----SCEEEECCCG
T ss_pred ----CCEEEEeCch
Confidence 6788875443
No 15
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.66 E-value=8.4e-17 Score=118.02 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=62.6
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
++|. .++ ++.+|+|||++|+++|+.+ ++.|+ .|.||+|+|+|++|..... |...|+. +++|+
T Consensus 8 ~~g~--~~~-~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~e~~~g~ 71 (94)
T 1awd_A 8 PSGE--ETI-ECPEDTYILDAAEEAGLDL-------PYSCR-AGACSSCAGKVESGEVDQS-----DQSFLDDAQMGKGF 71 (94)
T ss_dssp TTEE--EEE-ECCTTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECT-----TCCSSCHHHHHTTE
T ss_pred CCCc--EEE-EECCCCcHHHHHHHcCCCC-------CcCCC-CCcCCCCEEEEEeCCcCcc-----ccccCCHHHHhCCc
Confidence 5662 233 7899999999999999998 57798 9999999999999975432 2334432 35789
Q ss_pred EEeeeeEeeCCCCCccEEEeccCC
Q 029333 154 RLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
||+||+++. ++++|+..++
T Consensus 72 ~LaCq~~~~-----~d~~i~~~~~ 90 (94)
T 1awd_A 72 VLTCVAYPT-----SDVTILTHQE 90 (94)
T ss_dssp EEGGGCEES-----SCEEEECCCG
T ss_pred EEeeECEEC-----CCEEEEecch
Confidence 999999996 6888865443
No 16
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.65 E-value=1.4e-16 Score=117.34 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=58.8
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+|++|..... |...|+. +++|+||+||+++.
T Consensus 19 ~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~e~~~g~~LaC~~~~~- 84 (98)
T 1frd_A 19 EIDEETTILDGAEENGIEL-------PFSCH-SGSCSSCVGKVVEGEVDQS-----DQIFLDDEQMGKGFALLCVTYPR- 84 (98)
T ss_dssp EEETTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECT-----TCCSCCHHHHHTTEEEGGGCEES-
T ss_pred EeCCCCcHHHHHHHcCCCc-------ccCCC-CCCCCCCEEEEEeCCcccc-----ccccCCHHHhhCCcEEEeECEEC-
Confidence 7899999999999999999 57798 8999999999999975432 2234432 35789999999996
Q ss_pred CCCCccEEEeccC
Q 029333 164 PDSTGLVVIQQLP 176 (195)
Q Consensus 164 ~d~~G~vvI~~lP 176 (195)
++++|+..+
T Consensus 85 ----~d~~v~~~~ 93 (98)
T 1frd_A 85 ----SNCTIKTHQ 93 (98)
T ss_dssp ----SSEEEECCC
T ss_pred ----CCEEEEecc
Confidence 678886543
No 17
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.65 E-value=1.6e-16 Score=117.29 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=59.3
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+|++|+.... |...|+. +++|+||+||+++.
T Consensus 19 ~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~e~~~g~~LaCq~~~~- 84 (98)
T 1czp_A 19 EVPDDEYILDAAEEQGYDL-------PFSCR-AGACSTCAGKLVSGTVDQS-----DQSFLDDDQIEAGYVLTCVAYPT- 84 (98)
T ss_dssp EEETTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECT-----TCCSSCHHHHHTTEEEGGGCEES-
T ss_pred EeCCCCCHHHHHHHcCCCc-------cCCCC-CCCCCCCeEEEccCCcCcc-----ccccCCHHHhhCCeEEeeeCEEC-
Confidence 7899999999999999999 57798 9999999999999975432 2233432 35789999999996
Q ss_pred CCCCccEEEeccCC
Q 029333 164 PDSTGLVVIQQLPE 177 (195)
Q Consensus 164 ~d~~G~vvI~~lP~ 177 (195)
++++|+..++
T Consensus 85 ----~d~~v~~~~~ 94 (98)
T 1czp_A 85 ----SDVVIQTHKE 94 (98)
T ss_dssp ----SCEEEECCCT
T ss_pred ----CCEEEEeccc
Confidence 6788865443
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.65 E-value=7.6e-17 Score=118.20 Aligned_cols=72 Identities=26% Similarity=0.426 Sum_probs=57.9
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++| .+ ++.|+ .|.||+|+|+|++|..... |...|+. +++||||+||+++.
T Consensus 16 ~~~~g~tlL~a~~~~g-~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~~~~~g~~LaCq~~~~- 80 (93)
T 1wri_A 16 DVEPGERLIDIGSEKA-DL-------PLSCQ-AGACSTCLGKIVSGTVDQS-----EGSFLDDEQIEQGYVLTCIAIPE- 80 (93)
T ss_dssp EECTTSCHHHHHHHHS-CC-------CCSSS-SSSSSTTEEEEEESCEECT-----TCCSCCHHHHHTTEEETTTCEES-
T ss_pred EECCCCcHHHHHHHCc-CC-------CCCCC-CCCCCCCEEEEecCccCcc-----ccccCCHHHHhCCcEEeeeCEEC-
Confidence 7899999999999999 88 57798 8999999999999975432 2334432 35799999999996
Q ss_pred CCCCccEEEeccC
Q 029333 164 PDSTGLVVIQQLP 176 (195)
Q Consensus 164 ~d~~G~vvI~~lP 176 (195)
++++|+..+
T Consensus 81 ----~d~~v~~~~ 89 (93)
T 1wri_A 81 ----SDVVIETHK 89 (93)
T ss_dssp ----SCEEEECCC
T ss_pred ----CCEEEEecc
Confidence 678886443
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.64 E-value=8.2e-17 Score=119.06 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=59.4
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCEEEeeeeEeeC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~v~s 163 (195)
++.+|+|||++|+++|+.+ ++.|+ .|.||+|+|+|++|..... |...|+. +++|+||+||+++.
T Consensus 17 ~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~~~e~~~g~~LaCq~~~~- 82 (98)
T 1iue_A 17 ECNEDEYILDASERQNVEL-------PYSCR-GGSCSTCAAKLVEGEVDND-----DQSYLDEEQIKKKYILLCTCYPK- 82 (98)
T ss_dssp EEETTSCHHHHHHHTTCCC-------CCSSC-SSSSSTTEEEEEESCEECT-----TCCSSCHHHHHTTEEEGGGCEES-
T ss_pred EeCCCCcHHHHHHHcCCCC-------CCCCC-CCcCCCCEEEEeeCCcccc-----ccccCCHHHHhCCeEEEeECEEC-
Confidence 7899999999999999998 57798 9999999999999975432 2333432 35789999999996
Q ss_pred CCCCccEEEeccCC
Q 029333 164 PDSTGLVVIQQLPE 177 (195)
Q Consensus 164 ~d~~G~vvI~~lP~ 177 (195)
++++|+..++
T Consensus 83 ----~d~~i~~~~~ 92 (98)
T 1iue_A 83 ----SDCVIETHKE 92 (98)
T ss_dssp ----SCEEEECCCH
T ss_pred ----CCeEEEeCCh
Confidence 6888875443
No 20
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.63 E-value=2.4e-17 Score=121.58 Aligned_cols=89 Identities=24% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
|++|+|. .++|.. .++ ++.+|+|||++|+++|+.+ ++.|+ .|.||+|+|+|++|...+. +.
T Consensus 4 ~~~v~~~------~~~~~~-~~~-~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~---~~ 64 (98)
T 1jq4_A 4 VHTITAV------TEDGES-LRF-ECRSDEDVITAALRQNIFL-------MSSCR-EGGCATCKALCSEGDYDLK---GC 64 (98)
T ss_dssp EEEEEEE------ETTTEE-EEE-EEESCCTHHHHHHHHTCCC-------CCSCC-SSCCCCCCBCEEECCCCCC---CS
T ss_pred cEEEEEE------ecCCCc-EEE-EeCCCChHHHHHHHcCCCC-------cCCCC-CCCCCCCEEEEEcCccccC---cc
Confidence 5566662 134433 334 7899999999999999999 57795 9999999999999986542 12
Q ss_pred HHhhcCC--CCCCEEEeeeeEeeCCCCCccEEEec
Q 029333 142 EKEKLKR--KPKNWRLACQTTVGTPDSTGLVVIQQ 174 (195)
Q Consensus 142 E~~~L~~--~~~g~RLACQ~~v~s~d~~G~vvI~~ 174 (195)
|...|.. +++++||+||+++. ++++|+.
T Consensus 65 e~~~L~~~~~~~g~~LaCq~~~~-----~d~~v~~ 94 (98)
T 1jq4_A 65 SVQALPPEEEEEGLVLLCRTYPK-----TDLEIEL 94 (98)
T ss_dssp CTTTSCHHHHHHHCBCTTTCCSS-----CCSEEEC
T ss_pred cccccCHHHhcCCcEEEeeCEEC-----CCEEEEe
Confidence 4445543 35689999999996 5677753
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.58 E-value=1.2e-15 Score=132.48 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=70.2
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
|++|+|.+ ++|.. .++ ++.+|+||||+|+++||.+ ++.|+ .|.||+|+|+|++|+..+.+ .+.
T Consensus 3 ~~~v~~~~------~~~~~-~~~-~~~~g~tll~a~~~~gi~i-------~~~C~-~g~Cg~C~v~v~~G~~~~~~-~~~ 65 (338)
T 1krh_A 3 NHQVALQF------EDGVT-RFI-CIAQGETLSDAAYRQQINI-------PMDCR-EGECGTCRAFCESGNYDMPE-DNY 65 (338)
T ss_dssp CEEEEEEC------TTSCE-EEE-EECTTCCHHHHHHHTTCCC-------SCSCS-SSSSCTTEEEEEECCEECCG-GGS
T ss_pred ceEEEEEE------cCCCc-EEE-EeCCCCcHHHHHHHcCCCc-------ccCCC-CcCCCCCEEEEecCcEeccc-Ccc
Confidence 67777732 34443 333 7899999999999999999 57798 89999999999999865531 234
Q ss_pred HHhhcCC--CCCCEEEeeeeEeeCCCCCccEEEeccC
Q 029333 142 EKEKLKR--KPKNWRLACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 142 E~~~L~~--~~~g~RLACQ~~v~s~d~~G~vvI~~lP 176 (195)
|...|+. +.+|+||+||+.+. ++++|+..+
T Consensus 66 ~~~~l~~~~~~~g~~LaCq~~~~-----~~~~v~~~~ 97 (338)
T 1krh_A 66 IEDALTPEEAQQGYVLACQCRPT-----SDAVFQIQA 97 (338)
T ss_dssp CTTTCCHHHHHHTEEETTTCEES-----SSEEEEESS
T ss_pred ccccCCHHHHhCCeEEEEeCEEC-----CCeEEEEec
Confidence 5556653 46799999999996 568886543
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.54 E-value=3.2e-15 Score=142.80 Aligned_cols=90 Identities=28% Similarity=0.504 Sum_probs=70.2
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
|++|+| .++|.. + ++.+|+|||++++++|+++ ++.|+|.|.||+|+|+|++|++...
T Consensus 3 m~~V~~-------~~sg~~-v---~v~~G~tLLeAa~~aGi~i-------p~~C~G~G~CGtC~v~V~~G~v~~~----- 59 (631)
T 3zyy_X 3 EYKVLF-------KPDQKE-V---AISENTNLMEALNLAGINI-------KTVCGGAGTCGKCLVRVVDGQKRVE----- 59 (631)
T ss_dssp CEEEEE-------ETTTEE-E---EECTTSCHHHHHHHHTCCC-------CCSCCCSSCCSTTEEEEEESCEEES-----
T ss_pred ceEEEE-------ecCCeE-E---EECCCCcHHHHHHHcCCCC-------CcCCCCCCcCCCCEEEEeeCccccc-----
Confidence 667777 256754 3 7899999999999999999 5779999999999999999986433
Q ss_pred HHhhcCC--CCCCEEEeeeeEeeCCCCCccEEEeccCCcc
Q 029333 142 EKEKLKR--KPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 179 (195)
Q Consensus 142 E~~~L~~--~~~g~RLACQ~~v~s~d~~G~vvI~~lP~~~ 179 (195)
|...|+. +++|+||+||+++. ++++|+..++.+
T Consensus 60 e~~~Ls~~e~~~G~rLaCqa~~~-----sDl~Ielp~~~~ 94 (631)
T 3zyy_X 60 SYGKLKQEEIAQGYVLACQTYPE-----SDLIIEIPFDSR 94 (631)
T ss_dssp CCTTCCHHHHHTTEEETTTEEEC-----SSEEEECCTTSS
T ss_pred ccccCCHHHhcCCcEEeeeCEEC-----CCEEEEecchhh
Confidence 2233332 35799999999997 789997555444
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.53 E-value=5.9e-15 Score=115.10 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCC
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRT 139 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t 139 (195)
..|+.|+| .++|.. ++ ++.+|+|||++|+++|+.+ ++.|+ .|.||+|+|+|++|.....
T Consensus 25 ~~m~~i~i-------~~~g~~--~v-~v~~g~tlL~aa~~~Gi~i-------~~~C~-~G~CgtC~v~v~~G~v~~~--- 83 (128)
T 1doi_A 25 GEASDMDL-------DDEDYG--SL-EVNEGEYILEAAEAQGYDW-------PFSCR-AGACANCAAIVLEGDIDMD--- 83 (128)
T ss_dssp HHHHHSCC-------CTTTEE--EE-ECCTTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEEEC---
T ss_pred ccccEEEE-------EeCCcE--EE-EECCCCcHHHHHHHcCCCC-------ccCCC-ccCCCCCEeEEecCCcCch---
Confidence 45777766 356652 23 7899999999999999999 57796 8999999999999975432
Q ss_pred HHHHhhcCC---CCCCEEEeeeeEeeCCCCCcc-EEEe
Q 029333 140 DKEKEKLKR---KPKNWRLACQTTVGTPDSTGL-VVIQ 173 (195)
Q Consensus 140 ~~E~~~L~~---~~~g~RLACQ~~v~s~d~~G~-vvI~ 173 (195)
|...|.. .++++||+||+++. ++ ++|+
T Consensus 84 --e~~~L~~~e~~~~g~rLaCq~~~~-----~d~i~i~ 114 (128)
T 1doi_A 84 --MQQILSDEEVEDKNVRLTCIGSPD-----ADEVKIV 114 (128)
T ss_dssp --CCSSSCHHHHHTSCEEEGGGEEEC-----SSEEEEE
T ss_pred --hhccCCHhHhccCCEEEEEEeEEc-----CCeEEEE
Confidence 2233432 36899999999997 45 6664
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.42 E-value=3.1e-13 Score=117.28 Aligned_cols=74 Identities=20% Similarity=0.463 Sum_probs=59.2
Q ss_pred CCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCC--CCCCE
Q 029333 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKR--KPKNW 153 (195)
Q Consensus 76 pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~--~~~g~ 153 (195)
++|.. + ++.+|+||||+|+++||.+ ++.|+ .|.||+|+|+|++|.+.+.. ..|+. + +|+
T Consensus 244 ~~~~~-~---~~~~~~~ll~a~~~~g~~~-------~~~C~-~G~Cg~C~~~v~~G~~~~~~------~~l~~~e~-~g~ 304 (321)
T 2pia_A 244 RSGTS-F---EIPANRSILEVLRDANVRV-------PSSCE-SGTCGSCKTALCSGEADHRD------MVLRDDEK-GTQ 304 (321)
T ss_dssp TTCCE-E---EECTTSCHHHHHHHTTCCC-------CCSCS-SSSSCTTEEEEEESCEECCC------SSCCTTTT-TTE
T ss_pred CCCeE-E---EECCCCcHHHHHHHcCCCC-------CCCCC-CCCCCCCEEEEecCcccccc------CCCChHHH-CCe
Confidence 45554 3 7899999999999999999 57796 89999999999999865431 34443 4 799
Q ss_pred EEeeeeEeeCCCCCcc-EEEe
Q 029333 154 RLACQTTVGTPDSTGL-VVIQ 173 (195)
Q Consensus 154 RLACQ~~v~s~d~~G~-vvI~ 173 (195)
||+||+++. ++ ++|+
T Consensus 305 ~L~C~~~~~-----~d~~~i~ 320 (321)
T 2pia_A 305 IMVCVSRAK-----SAELVLD 320 (321)
T ss_dssp EETTTCEES-----SSEEEEC
T ss_pred EEEeEeEEC-----CCcEEEe
Confidence 999999997 55 7763
No 25
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.22 E-value=1.6e-06 Score=69.97 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=44.8
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|.. +++ ++.+|++||++|+++ |+... .+.|+ .|.||+|.|.| +|. .++
T Consensus 17 ng~~-~~~-~v~~~~tlL~~Lr~~~gl~g~------~~~C~-~G~CGaC~V~v-dG~--------------------~v~ 66 (168)
T 1t3q_A 17 NGKP-RVF-YVEPRMHLADALREVVGLTGT------KIGCE-QGVCGSCTILI-DGA--------------------PMR 66 (168)
T ss_dssp TTEE-EEE-EECTTSBHHHHHHHTTCCTTS------CCSCS-SSSSCTTEEEE-TTE--------------------EEE
T ss_pred CCEE-EEE-ecCCCCcHHHHHHhcCCCCcc------ccCCC-CCCCCCcEEEE-CCC--------------------Eee
Confidence 3554 444 689999999999997 88731 47798 89999999998 653 378
Q ss_pred eeeeEeeC
Q 029333 156 ACQTTVGT 163 (195)
Q Consensus 156 ACQ~~v~s 163 (195)
||.+.+..
T Consensus 67 sC~~~~~~ 74 (168)
T 1t3q_A 67 SCLTLAVQ 74 (168)
T ss_dssp GGGSBGGG
T ss_pred chhhHHHH
Confidence 99998853
No 26
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.17 E-value=3.2e-06 Score=70.64 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=47.2
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.+|+||||+|++.|+.+..+.. -.++|+ .|.||+|.|.| +|. .+|||++.+..-+
T Consensus 29 ~~~~~~tlL~~l~~~~~~~~~~l~-~~~~c~-~g~Cg~C~v~i-~G~--------------------~~~aC~~~~~~~~ 85 (241)
T 2bs2_B 29 EEAPSMTIFIVLNMIRETYDPDLN-FDFVCR-AGICGSCGMMI-NGR--------------------PSLACRTLTKDFE 85 (241)
T ss_dssp ECCTTCBHHHHHHHHHHHTCTTCC-CCCSSS-SSSSCTTEEEE-TTE--------------------EEEGGGCBGGGCT
T ss_pred eCCCCChHHHHHHHhchhcCCCCc-cCCCCC-CCCCCCCEeEE-CCC--------------------eecchhCcHhHcC
Confidence 678999999999987643210111 046898 89999999999 775 2699999986421
Q ss_pred CCccEEEeccC
Q 029333 166 STGLVVIQQLP 176 (195)
Q Consensus 166 ~~G~vvI~~lP 176 (195)
...++|+.++
T Consensus 86 -g~~~~ie~l~ 95 (241)
T 2bs2_B 86 -DGVITLLPLP 95 (241)
T ss_dssp -TSEEEEECCT
T ss_pred -CCeEEEecCC
Confidence 1347777665
No 27
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.09 E-value=6.2e-06 Score=68.83 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=46.6
Q ss_pred ecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCC
Q 029333 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPD 165 (195)
Q Consensus 86 ~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d 165 (195)
++.+|+|||++|++.|+.....+. -..+|+ .|.||+|.|.| +|. .+|||++.+...+
T Consensus 29 ~~~~~~tll~al~~~~~~~~p~l~-~~~~c~-~G~Cg~C~v~v-~G~--------------------~~~aC~~~~~~~~ 85 (243)
T 1kf6_B 29 PYDATTSLLDALGYIKDNLAPDLS-YRWSCR-MAICGSCGMMV-NNV--------------------PKLACKTFLRDYT 85 (243)
T ss_dssp EECTTCBHHHHHHHHHHHTCTTCC-CCCCCS-SSSSCCCEEEE-TTE--------------------EEEGGGCBGGGCT
T ss_pred ecCCCChHHHHHHHcCcccCCCcc-cccCCC-CCcCCCCEeEE-CCE--------------------EEeeeeeEHhhCC
Confidence 778999999999999954100111 147896 99999999996 664 3889999886321
Q ss_pred CCccEEEeccC
Q 029333 166 STGLVVIQQLP 176 (195)
Q Consensus 166 ~~G~vvI~~lP 176 (195)
+.++|+.++
T Consensus 86 --~~~~i~~l~ 94 (243)
T 1kf6_B 86 --DGMKVEALA 94 (243)
T ss_dssp --TCEEEECCT
T ss_pred --CcEEEEecC
Confidence 237776544
No 28
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.98 E-value=1.6e-05 Score=66.19 Aligned_cols=67 Identities=27% Similarity=0.408 Sum_probs=47.1
Q ss_pred ecCC--CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeC
Q 029333 86 TACG--GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGT 163 (195)
Q Consensus 86 ~a~~--GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s 163 (195)
++.+ |+|||++|++.|+.. |.--..++|+ .|.||.|.|.| +|. .+|||++.+..
T Consensus 26 ~~~~~~~~tll~~l~~~~~~~--~~l~~~~~C~-~g~Cg~C~v~v-~G~--------------------~~laC~~~~~~ 81 (238)
T 2wdq_B 26 EADEGRDMMLLDALIQLKEKD--PSLSFRRSCR-EGVCGSDGLNM-NGK--------------------NGLACITPISA 81 (238)
T ss_dssp ECCTTCCCBHHHHHHHHHHHC--TTCCCCCSSS-SSSSCTTEEEE-TTE--------------------EEEGGGCBGGG
T ss_pred ecCCCCCChHHHHHHHhcccC--CCccccccCC-CCCCCCCEEEE-CCE--------------------EEcccccchhh
Confidence 6778 999999999998431 1111147898 89999999997 554 26899998853
Q ss_pred -CCCCccEEEeccC
Q 029333 164 -PDSTGLVVIQQLP 176 (195)
Q Consensus 164 -~d~~G~vvI~~lP 176 (195)
...++.++|+.++
T Consensus 82 ~g~~~~~~~ie~l~ 95 (238)
T 2wdq_B 82 LNQPGKKIVIRPLP 95 (238)
T ss_dssp TCCTTSCEEEECCT
T ss_pred hccCCCCEEEeeCC
Confidence 1222347787665
No 29
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=97.94 E-value=1e-05 Score=78.45 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=47.2
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCC-----CCCceecCcEEEEecCcccCCCCCHHHHh-hcCC--
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNC-----AGGGTCGTCMVEVIEGKELLGSRTDKEKE-KLKR-- 148 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~C-----gG~G~CGTC~V~V~eG~~~l~~~t~~E~~-~L~~-- 148 (195)
||+. + ++++|+|||+|++++||.+ ++.| ++.|.|+.|.|+|..+... .+.. .+++
T Consensus 7 dg~~-~---~v~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~V~v~~~~~~------~~g~~~~~~~G 69 (783)
T 3i9v_3 7 NDRI-V---EVPPGTSVMDAVFHAGYDV-------PLFCSEKHLSPIGACRMCLVRIGLPKKG------PDGKPLLNEKG 69 (783)
T ss_dssp SSCE-E---EECTTCBHHHHHHHTTCCC-------CCSSCCTTSCCCCCSCCSEEEEECC--------------------
T ss_pred CCEE-E---EeCCCChHHHHHHHhCCCc-------cccCCCCCCCCCcccCCcEEEecccccc------ccccccccccc
Confidence 6764 3 7899999999999999999 4668 4589999999999532210 0111 1110
Q ss_pred -----CCCCEEEeeeeEee
Q 029333 149 -----KPKNWRLACQTTVG 162 (195)
Q Consensus 149 -----~~~g~RLACQ~~v~ 162 (195)
...+..+||++.+.
T Consensus 70 ~~~~~~~~~~~~aC~t~v~ 88 (783)
T 3i9v_3 70 EPEIQWQPKLAASCVTAVA 88 (783)
T ss_dssp ---CCBCSSCEETTTCBCC
T ss_pred ccccccCCCcccccCCCCC
Confidence 01357899999996
No 30
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.90 E-value=3.7e-05 Score=66.92 Aligned_cols=91 Identities=19% Similarity=0.432 Sum_probs=56.9
Q ss_pred CCCCEEEEEeeeeeEcCCC---Cc---eEEeEecCC-CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCc
Q 029333 60 EEPPVVNFAFVHSVLLPDG---TP---DIHFRTACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGK 132 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG---~~---~v~~~~a~~-GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~ 132 (195)
..+-.++|.+.+ +.|++ .. ..++ ++.+ |++||++|++.+..+....+- ..+|+ .|.||.|.|.| +|.
T Consensus 31 ~~~~~~~~~I~R--~~p~~~~~~p~~~~~~v-~v~~~~~tlLdaL~~i~~~~~ptl~~-~~~C~-~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 31 TGKRIKTFEIYR--FNPEEPGAKPKLQKFDV-DLDKCGTMVLDALIKIKNEVDPTLTF-RRSCR-EGICGSCAMNI-AGE 104 (282)
T ss_pred CCCeeEEEEEEE--eCCCCCCCCCCcEEEEE-EeCCCCCcHHHHHHhcCcccCCceee-cCCCC-CCCCCCCEEEE-CCE
Confidence 444556665443 55542 12 2222 5677 999999999977643111111 36799 79999999986 554
Q ss_pred ccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCCCCCccEEEeccCC
Q 029333 133 ELLGSRTDKEKEKLKRKPKNWRLACQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 133 ~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~d~~G~vvI~~lP~ 177 (195)
.+|||.+.+.. +....++|+.++.
T Consensus 105 --------------------~~laC~t~v~~-~~~~~~tIepL~~ 128 (282)
T 3vr8_B 105 --------------------NTLACICNIDQ-NTSKTTKIYPLPH 128 (282)
T ss_pred --------------------EecchhhhHhH-hcCCcEEeccCCC
Confidence 37788888842 2335677877664
No 31
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.75 E-value=2.8e-05 Score=62.41 Aligned_cols=68 Identities=26% Similarity=0.463 Sum_probs=49.1
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++ ++.+|++||++|++. |+.- . ...|+ .|.||.|.|.| +|. .++
T Consensus 10 NG~~-~~v-~~~~~~tLL~~Lr~~~gl~g--~----k~gC~-~G~CGaCtV~v-dG~--------------------~v~ 59 (161)
T 1rm6_C 10 NGRA-RED-LVPDNMLLLDYLRETVGLTG--T----KQGCD-GGECGACTVLV-DDR--------------------PRL 59 (161)
T ss_dssp TTEE-EEE-EEETTCBHHHHHHHTTCCTT--S----CCCSS-SSSSCTTEEEE-TTE--------------------EEE
T ss_pred CCEE-EEE-ecCCcCcHHHHHHHcCCCcc--c----ccCCC-CCCCCCCEEEE-CCc--------------------EEe
Confidence 5665 444 678999999999997 6543 1 57899 89999999998 553 488
Q ss_pred eeeeEeeCCCCCcc--EEEeccC
Q 029333 156 ACQTTVGTPDSTGL--VVIQQLP 176 (195)
Q Consensus 156 ACQ~~v~s~d~~G~--vvI~~lP 176 (195)
||++.+.. .+|. ++|+.++
T Consensus 60 sC~~~~~~--~~G~~v~TiEgL~ 80 (161)
T 1rm6_C 60 ACSTLAHQ--VAGKKVETVESLA 80 (161)
T ss_dssp GGGSBGGG--GTTSEEECGGGSS
T ss_pred chHHHHHH--hCCceEEEECCCC
Confidence 99998853 2344 4455554
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.72 E-value=5e-05 Score=61.47 Aligned_cols=70 Identities=17% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++ ++.++++||++|++. |+.- + ...|+ .|.||.|.|.| +|. .++
T Consensus 11 NG~~-~~~-~v~~~~tLLd~LR~~lgl~g--~----k~gC~-~G~CGaCtV~v-dG~--------------------~v~ 60 (166)
T 1n62_A 11 NGHP-VEA-LVEPRTLLIHFIREQQNLTG--A----HIGCD-TSHCGACTVDL-DGM--------------------SVK 60 (166)
T ss_dssp TTEE-EEE-EECTTCBHHHHHHHTSCCTT--S----CCCCS-SSCSCTTEEEE-TTE--------------------EEE
T ss_pred CCEE-EEE-ecCCCCcHHHHHHHcCCCCc--c----ccCCC-CCCCCCCEEEE-CCc--------------------EEe
Confidence 4655 544 789999999999985 5432 2 57798 89999999998 443 488
Q ss_pred eeeeEeeCCCCCccEEEeccC
Q 029333 156 ACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 156 ACQ~~v~s~d~~G~vvI~~lP 176 (195)
||.+.+..-+....++|+.+.
T Consensus 61 SC~~~~~~~~G~~V~TiEgL~ 81 (166)
T 1n62_A 61 SCTMFAVQANGASITTIEGMA 81 (166)
T ss_dssp GGGSBGGGGTTCEEECGGGSS
T ss_pred chhhhHHHhCCceEEEeCCCC
Confidence 999988533322234555554
No 33
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.72 E-value=5.7e-05 Score=63.73 Aligned_cols=67 Identities=22% Similarity=0.459 Sum_probs=47.5
Q ss_pred ecCC-CchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCC
Q 029333 86 TACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTP 164 (195)
Q Consensus 86 ~a~~-GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~ 164 (195)
++.+ |+||||+|.+.|+....+.+- ..+|+ .|.||+|.|.| +|. .+|||++.+..-
T Consensus 36 ~~~~~~~tlLd~l~~~~~~~~p~l~~-~~~c~-~g~Cg~C~v~i-~G~--------------------~~~aC~~~~~~~ 92 (252)
T 2h88_B 36 DLNKCGPMVLDALIKIKNELDSTLTF-RRSCR-EGICGSCAMNI-AGG--------------------NTLACTKKIDPD 92 (252)
T ss_dssp EGGGSCSBHHHHHHHHHHHTCTTCCC-CCSCS-SSSSCTTEEEE-TTE--------------------EEEGGGSBCCCC
T ss_pred ecCCCCChHHHHHHHhCcccCCCccc-cCCCC-CCCCCCCEEEE-CCc--------------------EEccccCCHhHc
Confidence 5667 999999999987421101111 35797 89999999995 554 489999998642
Q ss_pred CCCc-cEEEeccCC
Q 029333 165 DSTG-LVVIQQLPE 177 (195)
Q Consensus 165 d~~G-~vvI~~lP~ 177 (195)
.| .++|+.++.
T Consensus 93 --~g~~~~iepl~~ 104 (252)
T 2h88_B 93 --LSKTTKIYPLPH 104 (252)
T ss_dssp --TTSCEEEECSTT
T ss_pred --CCCceEEecccC
Confidence 23 688887763
No 34
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.69 E-value=5.6e-05 Score=61.01 Aligned_cols=70 Identities=17% Similarity=0.370 Sum_probs=48.5
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++ ++.++++||++|++. |+.- + ...|+ .|.||.|.|.| +|. .++
T Consensus 11 NG~~-~~~-~v~~~~tLLd~LR~~lgltg--~----k~gC~-~G~CGaCtV~v-dG~--------------------~v~ 60 (163)
T 1ffv_A 11 NGKA-QEK-AVEPRTLLIHFLREELNLTG--A----HIGCE-TSHCGACTVDI-DGR--------------------SVK 60 (163)
T ss_dssp TTEE-EEE-EECTTCBHHHHHHHTSCCTT--S----CCCCS-SSCSCTTEEEE-TTE--------------------EEE
T ss_pred CCEE-EEE-ecCCCCcHHHHHHhcCCCcc--c----ccCCC-CCCCCCCEEEE-CCc--------------------Eec
Confidence 4655 544 789999999999984 5432 2 57799 89999999998 443 488
Q ss_pred eeeeEeeCCCCCccEEEeccC
Q 029333 156 ACQTTVGTPDSTGLVVIQQLP 176 (195)
Q Consensus 156 ACQ~~v~s~d~~G~vvI~~lP 176 (195)
||.+.+..-+....++|+-+.
T Consensus 61 sC~~~~~~~~G~~I~TiEgL~ 81 (163)
T 1ffv_A 61 SCTHLAVQCDGSEVLTVEGLA 81 (163)
T ss_dssp GGGSBGGGGTTCEEECGGGTS
T ss_pred chHhhHHHhCCceEEEECCCC
Confidence 999988642222234555554
No 35
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.66 E-value=5.1e-05 Score=71.33 Aligned_cols=55 Identities=27% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCC-----C-CceecCcEEEEecCcccCCCCCHHHHhhcCCCC
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----G-GGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKP 150 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~Cg-----G-~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~ 150 (195)
+|.. + ++.+|+|||++|+++|+.+ | +.|. + .|.||.|.|.| +|.
T Consensus 7 ng~~-v---~v~~g~tiL~a~~~~gi~i--p-----~lC~~~~~~~~~G~Cg~C~V~v-~g~------------------ 56 (574)
T 3c8y_A 7 NGVQ-F---NTDEDTTILKFARDNNIDI--S-----ALCFLNNCNNDINKCEICTVEV-EGT------------------ 56 (574)
T ss_dssp TTEE-E---EECCCCBHHHHHHHTTCCC--C-----CSSCBTTBCCSSSCCCTTEEEE-TTT------------------
T ss_pred CCEE-E---EeCCCCHHHHHHHHcCCCC--C-----cccCCCCCCCCcccCCCCEEEe-CCC------------------
Confidence 5654 3 6899999999999999988 3 4455 7 89999999997 332
Q ss_pred CCEEEeeeeEee
Q 029333 151 KNWRLACQTTVG 162 (195)
Q Consensus 151 ~g~RLACQ~~v~ 162 (195)
. .++||++.+.
T Consensus 57 ~-~~~aC~t~v~ 67 (574)
T 3c8y_A 57 G-LVTACDTLIE 67 (574)
T ss_dssp E-EEEGGGCBCC
T ss_pred c-ccccCCCCcc
Confidence 2 6899999986
No 36
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.11 E-value=0.00082 Score=54.10 Aligned_cols=69 Identities=19% Similarity=0.469 Sum_probs=47.3
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEE
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRL 155 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RL 155 (195)
+|+. +++ ++.++++||++|++. |+.- . ...|+ .|.||.|.|.| +|. .++
T Consensus 11 NG~~-~~v-~v~p~~tLLd~LR~~lgltg--t----k~gC~-~G~CGACtV~v-dG~--------------------~v~ 60 (160)
T 3hrd_D 11 NGEA-RSI-VTEPNKRLLDLLREDFGLTS--V----KEGCS-EGECGACTVIF-NGD--------------------PVT 60 (160)
T ss_dssp TTEE-EEE-EECSSSBHHHHHHTTSCCTT--S----CCSSS-SSSSCTTEEEE-TTE--------------------EEE
T ss_pred CCEE-EEE-ecCCCCCHHHHHHHhcCCCc--c----ccccC-CCCCCCCEEEE-CCE--------------------EEE
Confidence 4654 444 789999999999986 6532 2 47798 89999999997 442 488
Q ss_pred eeeeEeeCCCCCccEEEecc
Q 029333 156 ACQTTVGTPDSTGLVVIQQL 175 (195)
Q Consensus 156 ACQ~~v~s~d~~G~vvI~~l 175 (195)
||.+.+..-+....++|+-+
T Consensus 61 sC~~~~~~~~G~~I~TiEgl 80 (160)
T 3hrd_D 61 TCCMLAGQADESTIITLEGV 80 (160)
T ss_dssp GGGSBGGGGTTEEEECGGGT
T ss_pred chhhhhhhhCCCceEEeCCC
Confidence 88888753232223444444
No 37
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.35 E-value=0.0031 Score=62.41 Aligned_cols=71 Identities=20% Similarity=0.453 Sum_probs=49.7
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEe
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLA 156 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLA 156 (195)
+|+. +++ ++.++++||++|++. +.+.+. ...|+ .|.||.|-|.| +|. .++|
T Consensus 9 ng~~-~~~-~~~~~~~ll~~Lr~~-~~l~g~----k~gC~-~G~CGaCtv~v-dg~--------------------~v~s 59 (907)
T 1dgj_A 9 NGMA-RRL-LVSPNDLLVDVLRSQ-LQLTSV----KVGCG-KGQCGACTVIL-DGK--------------------VVRA 59 (907)
T ss_dssp TTBC-CEE-EECTTCBHHHHHHHT-TCCTTS----CCSSS-SSSSCTTEEEE-TTE--------------------EEEG
T ss_pred CCEE-EEE-ecCCCCcHHHHHHHh-cCCCcc----CCCCC-CCCcCceEEEE-CCe--------------------Eeeh
Confidence 4555 444 789999999999985 233222 57899 89999999998 443 4889
Q ss_pred eeeEeeCC-CCCccEEEeccC
Q 029333 157 CQTTVGTP-DSTGLVVIQQLP 176 (195)
Q Consensus 157 CQ~~v~s~-d~~G~vvI~~lP 176 (195)
|.+.+..- +....++|+-+.
T Consensus 60 C~~~~~~~~~g~~i~TiEgl~ 80 (907)
T 1dgj_A 60 CIIKMSRVAENASVTTLEGIG 80 (907)
T ss_dssp GGCBGGGSCTTCEEECGGGTC
T ss_pred hHhHHHHHcCCCcEEEECCCC
Confidence 99988543 323345666665
No 38
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.33 E-value=0.0033 Score=62.25 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=53.1
Q ss_pred CEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHH
Q 029333 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDK 141 (195)
Q Consensus 63 p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~ 141 (195)
.+|+|.+ +|+. +++ ++.++++||++|++. |+-- . ...|+ .|.||.|-|.| +|.
T Consensus 2 ~~~~~~~-------ng~~-~~~-~~~~~~~ll~~Lr~~~~l~g--~----k~gC~-~g~CGaCtv~v-dg~--------- 55 (907)
T 1vlb_A 2 IQKVITV-------NGIE-QNL-FVDAEALLSDVLRQQLGLTG--V----KVGCE-QGQCGACSVIL-DGK--------- 55 (907)
T ss_dssp EEEEEEE-------TTEE-EEE-EECTTSBHHHHHHHTTCCTT--S----CCSSS-SSSSCTTEEEE-TTE---------
T ss_pred ceEEEEE-------CCEE-EEE-ecCCCChHHHHHHHhcCCCe--e----cCCCC-CCCcCccEEEE-CCe---------
Confidence 3566643 4554 444 789999999999985 4321 2 57899 89999999997 443
Q ss_pred HHhhcCCCCCCEEEeeeeEeeCC-CCCccEEEeccC
Q 029333 142 EKEKLKRKPKNWRLACQTTVGTP-DSTGLVVIQQLP 176 (195)
Q Consensus 142 E~~~L~~~~~g~RLACQ~~v~s~-d~~G~vvI~~lP 176 (195)
.++||.+.+..- +....++|+-++
T Consensus 56 -----------~~~sC~~~~~~~~~g~~i~Tiegl~ 80 (907)
T 1vlb_A 56 -----------VVRACVTKMKRVADGAQITTIEGVG 80 (907)
T ss_dssp -----------EEEGGGCBGGGSCTTCEEECHHHHC
T ss_pred -----------EeechHhHHHHHcCCCcEEEECCCC
Confidence 488999987543 322346666665
No 39
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=94.89 E-value=0.042 Score=44.31 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=45.9
Q ss_pred ecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEeeeeEeeCC
Q 029333 86 TACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLACQTTVGTP 164 (195)
Q Consensus 86 ~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~s~ 164 (195)
++.++++||+.|++. |+-- . ...|+ .|.||.|-|.|-.-+ +. ...+ .-....||...+..-
T Consensus 18 ~~~p~~~Ll~~LR~~lgltG--t----K~GC~-~G~CGACTVlvd~~~----~~----~~~~---~g~~v~SCl~~a~~~ 79 (164)
T 3nvw_A 18 NADPETTLLAYLRRKLGLRG--T----KLGCG-EGGCGACTVMLSKYD----RL----QDKI---IHFSANACLAPICTL 79 (164)
T ss_dssp TCCTTCBHHHHHHHTSCCTT--S----CCSCS-SSSSCTTEEEEEEEE----TT----TTEE---EEEEEETTTCBGGGC
T ss_pred cCCCCCCHHHHHHHHcCCCC--c----CCCcC-CCCCCCCEEEEcccc----cc----cccc---CCcEEehhhhhHHHh
Confidence 688999999999985 5432 2 57898 899999999985311 00 0000 012478888877543
Q ss_pred CCCccEEEeccC
Q 029333 165 DSTGLVVIQQLP 176 (195)
Q Consensus 165 d~~G~vvI~~lP 176 (195)
+....++|+-+.
T Consensus 80 ~G~~I~TiEGL~ 91 (164)
T 3nvw_A 80 HHVAVTTVEGIG 91 (164)
T ss_dssp TTCEEECGGGTC
T ss_pred CCcceEEecccC
Confidence 333345555553
No 40
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=94.55 E-value=0.041 Score=50.62 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=50.7
Q ss_pred CCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEecCcccCCCCCHHHHhhcCCCCCCEEEe
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIEGKELLGSRTDKEKEKLKRKPKNWRLA 156 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~eG~~~l~~~t~~E~~~L~~~~~g~RLA 156 (195)
+|+. +++.++.++++||+.|++.|+. +. ...|+ .|.||.|-|.|.+-.. ...++|
T Consensus 8 Ng~~-~~~~~~~~~~~Ll~~Lr~~~l~--g~----k~gC~-~G~CGaCtV~v~~~~~-----------------g~~v~s 62 (462)
T 2w3s_A 8 NGET-RRVRIEDPTQSLLEWLRAEGLT--GT----KEGCN-EGDCGACTVMIRDAAG-----------------SRAVNA 62 (462)
T ss_dssp TTEE-EEEECSCTTCBHHHHHHHTTCT--TS----CCSCS-SSSSCTTEEEEEETTE-----------------EEEEET
T ss_pred CCEE-EEEecCCCCCcHHHHHHHcCCC--cc----CCCCC-CCCcCCcEEEEEecCC-----------------CeEEEc
Confidence 4554 4332568999999999955654 22 58899 8999999999844221 125889
Q ss_pred eeeEeeCCCCCccEEEeccCC
Q 029333 157 CQTTVGTPDSTGLVVIQQLPE 177 (195)
Q Consensus 157 CQ~~v~s~d~~G~vvI~~lP~ 177 (195)
|.+.+..-+....++|+-++.
T Consensus 63 Cl~~~~~~~g~~i~TiEgl~~ 83 (462)
T 2w3s_A 63 CLMMLPQIAGKALRTIEGIAA 83 (462)
T ss_dssp TTCBGGGGTTCEEECGGGTSC
T ss_pred hhhhHHHhCCCcEEEECCCCC
Confidence 998886433223456666653
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=89.30 E-value=0.28 Score=44.26 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEE
Q 029333 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEV 128 (195)
Q Consensus 62 ~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V 128 (195)
+..|+|+| ||+. + ++.+|+||++||+++|+++-. ++. .+.-+|.-.|+.|.|.|
T Consensus 13 ~~~v~~~~-------dg~~-~---~~~~g~ti~~a~~~~g~~~~~-~~~-~~~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 13 GKKVTIYF-------EGKE-L---EAYEGEKLPVALLANEIYWLT-TSN-EGRKRGAFTFGPVPMTV 66 (493)
T ss_dssp SCEEEEEE-------TTEE-E---EEETTCBHHHHHHHTTCCCCE-ECT-TSCEECSSSSSCCEEBS
T ss_pred CCeEEEEE-------CCEE-E---EecCCCHHHHHHHHCCCceec-CCC-CCCCCccccceEEEEEE
Confidence 34577754 5665 3 679999999999999997521 110 01111122267899976
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=85.49 E-value=0.82 Score=47.13 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 77 dG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
+|+. +++..+.++.+||+.|++. |+-= . -..|+ .|.||.|-|.|-
T Consensus 11 Ng~~-~~~~~~~p~~~ll~~LR~~~~ltg--t----k~gC~-~g~CGaCtV~~~ 56 (1332)
T 3unc_A 11 NGKK-VVEKNADPETTLLAYLRRKLGLRG--T----KLGCG-EGGCGACTVMLS 56 (1332)
T ss_dssp TTEE-EEETTCCTTCBHHHHHHHTSCCTT--S----CCSCS-SSSSCTTEEEEE
T ss_pred CCEE-EEeecCCCCCCHHHHHhhhcCCCC--c----CCCcC-CCCCCCcEEEEe
Confidence 3554 3322588999999999984 5543 2 57898 899999999984
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=85.39 E-value=1.2 Score=43.87 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=41.1
Q ss_pred CCCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcccCC---CCCCC-CCCCCCceecCcEEEEe
Q 029333 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGP---YARPL-SNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 60 ~~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p---~s~~~-~~CgG~G~CGTC~V~V~ 129 (195)
..+..|+|.| ||.. + ++.+|+||..||+.+|+.+-+. |.+.. .-|. .|.|..|.|.|.
T Consensus 18 ~~~~~~~~~~-------dG~~-~---~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~ 79 (965)
T 2gag_A 18 NREEALSLTV-------DGAK-L---SAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEEEEE-------TTEE-E---EEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred CCCCeEEEEE-------CCEE-E---EecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence 3455677754 5665 3 6789999999999999986322 22211 3576 688999999997
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=82.38 E-value=1.6 Score=44.89 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=38.5
Q ss_pred EEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHC-CCcccCCCCCCCCCCCCCceecCcEEEEec
Q 029333 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEVIE 130 (195)
Q Consensus 64 ~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~-GI~l~~p~s~~~~~CgG~G~CGTC~V~V~e 130 (195)
.+.|.+. |+. +++..+.+..|||+-|+++ |+-= . -..|+ .|-||.|-|.|.+
T Consensus 9 ~l~F~vN-------G~~-v~~~~~~p~~tLl~~LR~~~~ltG--T----K~gC~-EG~CGACtV~v~~ 61 (1335)
T 3zyv_A 9 ELIFFVN-------GKK-VTERNADPEVNLLFYLRKVIRLTG--T----KYGCG-GGDCGACTVMISR 61 (1335)
T ss_dssp CEEEEET-------TEE-EEESSCCTTCBHHHHHHHTTCCTT--S----CCSCS-SSSSCTTEEEEEE
T ss_pred eEEEEEC-------CEE-EEeCCCCcCccHHHHHhccCCCcc--c----ccccC-CCCCcceEEEEee
Confidence 4777443 543 5444688999999999984 5443 3 47899 8999999999864
No 45
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=69.65 E-value=2.3 Score=34.74 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=22.9
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEe
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVI 129 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~ 129 (195)
.+.+ +.+.|++.+-.+. ....|| .|.||.|.|.+.
T Consensus 205 ~v~~-l~~~gv~~~vs~e-~~m~CG-~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISME-SRMACG-IGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECC-CCCSSS-SSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEec-ccccCc-ccccccCCcccc
Confidence 3455 6677876432222 146677 999999999864
No 46
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=57.29 E-value=8 Score=27.36 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.5
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHC
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNS 100 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~ 100 (195)
.+|+++..+ .++.+|+||.||+.++
T Consensus 7 hLPn~QrT~--V~VrpG~tlrdaL~Ka 31 (77)
T 1c1y_B 7 FLPNKQRTV--VNVRNGMSLHDCLMKA 31 (77)
T ss_dssp EETTTEEEE--EECCTTCBHHHHHHHH
T ss_pred ECCCCceEE--EEecCCcCHHHHHHHH
Confidence 468887744 4899999999988653
No 47
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=56.32 E-value=15 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.3
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHC
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNS 100 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~ 100 (195)
.+|+++..+ .++.+|+||.||+.++
T Consensus 13 hLPn~QrT~--V~VrpG~tlrdaL~Ka 37 (86)
T 1wxm_A 13 YLPNKQRTV--VTVRDGMSVYDSLDKA 37 (86)
T ss_dssp ECSSSCEEE--EECCSSCBSHHHHHHH
T ss_pred ECCCCCeEE--EEecCCcCHHHHHHHH
Confidence 468887744 4899999998887653
No 48
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=54.67 E-value=9.1 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=19.2
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHC
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNS 100 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~ 100 (195)
.+|+++..+ .++.+|+||.||+.++
T Consensus 23 hLPNqQrT~--V~VrpG~tlrdAL~Ka 47 (95)
T 2l05_A 23 FLPNKQRTV--VPARCGVTVRDSLKKA 47 (95)
T ss_dssp EETTTEEEE--EECCTTCBHHHHHHHH
T ss_pred ECCCCCeEE--EEecCCcCHHHHHHHH
Confidence 468887744 4899999999887653
No 49
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=52.45 E-value=8 Score=28.47 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=27.6
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHCCCcccCCCCCCCCCCCCCceecCcEEEEec
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEVIE 130 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC~V~V~e 130 (195)
.+|+++..+ .++.+|.||.++|.++ +.. + +-.+-.|.|....
T Consensus 19 hLPNqQrT~--V~VrpG~tlrdaL~Ka-Lk~-----------R-~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 19 FLPNKQRTV--VPARCGVTVRDSLKKA-LMM-----------R-GLIPECCAVYRIQ 60 (96)
T ss_dssp EETTTEEEE--EECCTTCBHHHHHHHH-HHT-----------T-TCCGGGEEEEECC
T ss_pred ECCCCceEE--EEecCCcCHHHHHHHH-HHH-----------c-CCChHHeEEEEcc
Confidence 468887744 4899999999888663 111 2 2345577777654
No 50
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=44.56 E-value=15 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.6
Q ss_pred EcCCCCceEEeEecCCCchHHHHHHHC
Q 029333 74 LLPDGTPDIHFRTACGGQKLRDIMLNS 100 (195)
Q Consensus 74 ~~pdG~~~v~~~~a~~GetLLdal~~~ 100 (195)
.+|..+..+ .+|.+|+||.|++.++
T Consensus 24 hLPNqQrT~--V~VrpG~tlrdaL~Ka 48 (107)
T 1rrb_A 24 FLPNKQRTV--VNVRNGMSLHDCLMKA 48 (107)
T ss_dssp ECTTTCCEE--EECCTTCBHHHHHHHH
T ss_pred ECCCCCeEE--EEecCCcCHHHHHHHH
Confidence 578887744 4899999999887654
No 51
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=33.80 E-value=65 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcc
Q 029333 61 EPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (195)
Q Consensus 61 ~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l 104 (195)
..-.|+|.+.. ++|.....-+. ..|++|+++|.++. .+
T Consensus 5 g~k~i~i~v~~----~~~~~~~~~v~-t~g~tL~dvLk~~~-~v 42 (101)
T 3u7z_A 5 GEKHITVTVIH----GDQTENVFEFD-TDAKYLGEVLESEN-LV 42 (101)
T ss_dssp CCEEEEEEEEC----TTSCEEEEEEE-ECCSBHHHHHHHTT-CE
T ss_pred ceeEEEEEEEc----CCCceeEEEEc-CCccHHHHHHHHcC-cc
Confidence 34456664443 55665332224 89999999999998 44
No 52
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.19 E-value=27 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=19.7
Q ss_pred hHHHHHHHCCCcccCC-CCCCCCCCCCCceecCcE
Q 029333 92 KLRDIMLNSNIDLYGP-YARPLSNCAGGGTCGTCM 125 (195)
Q Consensus 92 tLLdal~~~GI~l~~p-~s~~~~~CgG~G~CGTC~ 125 (195)
.-|+.|.+.|.-..-. + .+.|. .|.|+.|.
T Consensus 35 rdL~~Le~~G~l~R~~~~---GgaC~-~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEE---PDGCL-SGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCC---CCCCC-CSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCc---CCCCC-CCCCCCCC
Confidence 3578888888764210 1 37787 47899994
No 53
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=24.91 E-value=37 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCEEEEEeeeeeEcCCCCceEEeEecCCCchHHHHHHHCCCcc
Q 029333 61 EPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (195)
Q Consensus 61 ~~p~V~~~~~~~~~~pdG~~~v~~~~a~~GetLLdal~~~GI~l 104 (195)
+|-.|.+.+. .|+....+.+ ++++|.|+.+++...|+.-
T Consensus 11 ~~~~v~v~ya----~p~rq~~~~~-~v~~g~TV~daI~~~gi~~ 49 (97)
T 2hj1_A 11 NQINIEIAYA----FPERYYLKSF-QVDEGITVQTAITQSGILS 49 (97)
T ss_dssp CEEEEEEEEE----ETTEEEEEEE-EEETTCBHHHHHHHHTHHH
T ss_pred ceEEEEEEEe----CCCCCEEEEE-EcCCCCcHHHHHHHcCCCc
Confidence 4445555333 2454443433 7899999999999999954
No 54
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.43 E-value=38 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=19.4
Q ss_pred hHHHHHHHCCCcccCCCCCCCCCCCCCceecCc
Q 029333 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTC 124 (195)
Q Consensus 92 tLLdal~~~GI~l~~p~s~~~~~CgG~G~CGTC 124 (195)
..|+.|.+.|+-..-. .....|. .|.|+.|
T Consensus 35 rDL~~Le~~G~l~R~~--~~~~~C~-sgsC~sC 64 (87)
T 2k02_A 35 AMLERMEAMGKVVRIS--ETSEGCL-SGSCKSC 64 (87)
T ss_dssp HHHHHHHTTCCSEEEE--EECCSSC-SSSSSSC
T ss_pred HHHHHHHHCCCEEEEe--cCCCCCC-CCCCCCC
Confidence 3578888999765210 0036787 4779988
Done!