Query 029336
Match_columns 195
No_of_seqs 187 out of 1341
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 1.5E-30 3.2E-35 215.1 9.8 170 2-194 7-190 (237)
2 PF00335 Tetraspannin: Tetrasp 99.8 4.5E-21 9.7E-26 153.0 -2.6 137 3-153 1-150 (221)
3 cd03163 TM4SF8_like_LEL Tetras 99.0 2.9E-11 6.3E-16 87.6 -0.0 83 92-194 1-94 (105)
4 cd03161 TM4SF2_6_like_LEL Tetr 99.0 2.8E-11 6E-16 87.4 -0.5 86 93-194 1-94 (104)
5 cd03166 CD63_LEL Tetraspanin, 99.0 8.6E-11 1.9E-15 84.3 -0.1 81 93-194 1-89 (99)
6 cd03158 penumbra_like_LEL Tetr 98.9 1.2E-10 2.5E-15 86.6 -0.1 86 93-194 1-109 (119)
7 cd03167 oculospanin_like_LEL T 98.9 1.7E-10 3.6E-15 86.1 -0.1 84 95-194 3-110 (120)
8 cd03159 TM4SF9_like_LEL Tetras 98.9 1.4E-10 3.1E-15 86.3 -0.7 86 93-194 1-111 (121)
9 cd03154 TM4SF3_like_LEL Tetras 98.8 4.8E-10 1E-14 80.5 -0.4 81 89-194 1-90 (100)
10 cd03156 uroplakin_I_like_LEL T 98.8 3.4E-10 7.3E-15 82.7 -1.9 83 92-194 2-104 (114)
11 cd03162 peripherin_like_LEL Te 98.8 6.7E-10 1.5E-14 85.4 -1.1 46 94-153 2-58 (143)
12 cd03160 CD37_CD82_like_LEL Tet 98.8 1E-09 2.2E-14 81.1 -0.6 83 92-194 1-106 (117)
13 cd03165 NET-5_like_LEL Tetrasp 98.7 9.3E-10 2E-14 78.6 -1.4 77 94-194 2-88 (98)
14 cd03155 CD151_like_LEL Tetrasp 98.7 2.3E-09 4.9E-14 78.2 -0.2 82 93-194 1-100 (110)
15 cd03157 TM4SF12_like_LEL Tetra 98.7 8.1E-09 1.8E-13 75.2 1.3 71 104-194 15-93 (103)
16 cd03164 CD53_like_LEL Tetraspa 98.6 4.2E-09 9.1E-14 73.7 -1.1 45 93-151 1-51 (86)
17 cd03127 tetraspanin_LEL Tetras 98.4 2.4E-08 5.3E-13 69.4 -1.2 63 104-194 14-80 (90)
18 cd03152 CD9_LEL Tetraspanin, e 98.2 1.8E-07 4E-12 65.2 -0.5 44 93-150 1-52 (84)
19 cd03151 CD81_like_LEL Tetraspa 96.6 0.00026 5.7E-09 49.3 -1.7 45 94-152 2-54 (84)
20 PRK12585 putative monovalent c 88.1 2.3 4.9E-05 34.3 6.7 54 8-61 5-59 (197)
21 PF04156 IncA: IncA protein; 86.8 1.2 2.7E-05 35.2 4.7 19 10-28 6-24 (191)
22 PF11297 DUF3098: Protein of u 85.7 1.1 2.3E-05 30.2 3.1 23 11-33 6-28 (69)
23 COG4993 Gcd Glucose dehydrogen 80.4 6.9 0.00015 37.1 7.1 63 8-81 3-65 (773)
24 KOG4433 Tweety transmembrane/c 80.1 4.2 9.1E-05 37.2 5.5 43 42-84 209-252 (526)
25 PF05915 DUF872: Eukaryotic pr 79.5 3.3 7.1E-05 30.7 3.9 48 9-57 44-91 (115)
26 PF04103 CD20: CD20-like famil 75.3 0.91 2E-05 34.0 0.0 70 13-84 4-73 (150)
27 cd07912 Tweety_N N-terminal do 74.9 7.7 0.00017 35.1 5.8 39 42-80 208-247 (418)
28 PF09323 DUF1980: Domain of un 69.3 11 0.00024 29.7 5.0 40 45-84 35-87 (182)
29 PRK12660 putative monovalent c 63.0 35 0.00077 25.0 6.2 49 12-62 2-51 (114)
30 PF11127 DUF2892: Protein of u 62.3 26 0.00057 22.7 5.0 43 15-64 13-55 (66)
31 PF06168 DUF981: Protein of un 61.3 86 0.0019 25.3 8.8 48 13-60 43-92 (191)
32 COG0713 NuoK NADH:ubiquinone o 61.2 40 0.00086 24.3 5.9 78 15-97 7-86 (100)
33 PF07086 DUF1352: Protein of u 60.6 87 0.0019 25.2 8.7 83 7-93 39-122 (186)
34 PF15125 TMEM238: TMEM238 prot 60.4 42 0.00092 22.2 5.5 46 8-61 6-51 (65)
35 PRK07946 putative monovalent c 60.0 21 0.00045 28.1 4.7 48 11-60 3-51 (163)
36 PF03729 DUF308: Short repeat 59.4 43 0.00094 21.3 6.8 47 18-68 2-48 (72)
37 PF11384 DUF3188: Protein of u 57.2 15 0.00032 23.0 2.8 21 40-60 23-43 (49)
38 PF11381 DUF3185: Protein of u 54.9 8.4 0.00018 25.1 1.5 47 13-59 5-58 (59)
39 PF06341 DUF1056: Protein of u 54.8 49 0.0011 21.8 5.1 47 3-58 6-52 (63)
40 PRK05715 NADH:ubiquinone oxido 52.9 46 0.00099 23.5 5.3 74 15-94 7-81 (100)
41 PF04906 Tweety: Tweety; Inte 52.1 11 0.00023 33.9 2.3 31 50-80 194-224 (406)
42 COG3247 HdeD Uncharacterized c 50.8 57 0.0012 26.2 6.0 51 14-68 21-71 (185)
43 CHL00015 ndhE NADH dehydrogena 48.9 67 0.0015 22.8 5.6 75 16-94 7-82 (101)
44 PRK08389 putative monovalent c 48.6 1E+02 0.0023 22.5 7.8 49 14-62 4-52 (114)
45 TIGR00941 2a6301s03 Multicompo 44.9 56 0.0012 23.7 4.7 47 12-59 2-48 (104)
46 PF06772 LtrA: Bacterial low t 44.5 1.6E+02 0.0035 25.4 8.5 59 9-67 252-310 (354)
47 PF04156 IncA: IncA protein; 43.6 68 0.0015 25.1 5.5 15 45-59 11-25 (191)
48 PRK07375 putative monovalent c 42.1 1.3E+02 0.0029 21.8 6.6 48 15-62 5-52 (112)
49 PF00420 Oxidored_q2: NADH-ubi 41.6 1.1E+02 0.0025 20.9 7.6 73 16-94 3-76 (95)
50 PF09925 DUF2157: Predicted me 41.3 1.5E+02 0.0033 22.2 7.7 23 10-32 31-53 (145)
51 PF06770 Arif-1: Actin-rearran 41.1 1.9E+02 0.0042 23.4 7.6 54 13-66 3-65 (196)
52 PF15048 OSTbeta: Organic solu 40.0 39 0.00085 25.3 3.3 24 5-28 36-59 (125)
53 PRK08600 putative monovalent c 38.6 71 0.0015 23.5 4.5 48 12-60 2-49 (113)
54 PF13903 Claudin_2: PMP-22/EMP 38.6 98 0.0021 23.1 5.5 29 45-73 74-103 (172)
55 KOG4753 Predicted membrane pro 38.3 20 0.00043 26.7 1.4 11 45-55 87-97 (124)
56 PRK12659 putative monovalent c 37.0 79 0.0017 23.3 4.5 48 12-60 2-49 (117)
57 PF09971 DUF2206: Predicted me 36.9 2E+02 0.0042 25.6 7.8 8 119-126 270-277 (367)
58 PF04854 DUF624: Protein of un 36.5 35 0.00075 22.6 2.4 20 8-27 1-23 (77)
59 PF10724 DUF2516: Protein of u 36.4 1.6E+02 0.0034 21.2 5.9 27 6-32 3-29 (100)
60 PF14387 DUF4418: Domain of un 35.9 1.8E+02 0.0039 21.7 6.4 12 45-56 71-82 (124)
61 PRK12586 putative monovalent c 33.5 2.2E+02 0.0048 21.9 8.5 28 5-32 5-32 (145)
62 PRK12658 putative monovalent c 33.2 76 0.0016 23.8 3.9 48 12-60 2-49 (125)
63 PF06195 DUF996: Protein of un 33.2 2.2E+02 0.0047 21.6 7.6 18 15-32 2-19 (139)
64 PRK09094 putative monovalent c 33.1 96 0.0021 22.9 4.4 47 12-59 2-48 (114)
65 PF13706 PepSY_TM_3: PepSY-ass 32.9 52 0.0011 19.0 2.4 22 45-66 12-33 (37)
66 PF11460 DUF3007: Protein of u 32.3 48 0.001 24.1 2.6 25 102-126 61-88 (104)
67 COG3374 Predicted membrane pro 32.2 76 0.0017 25.7 4.0 44 15-58 47-92 (197)
68 PRK10209 acid-resistance membr 32.2 2.5E+02 0.0054 22.2 7.1 48 14-65 23-70 (190)
69 KOG4054 Uncharacterized conser 32.0 2.6E+02 0.0057 22.2 8.1 80 8-90 40-119 (183)
70 PF15345 TMEM51: Transmembrane 31.8 74 0.0016 26.5 3.9 22 45-66 64-85 (233)
71 MTH00192 ND4L NADH dehydrogena 31.4 1.9E+02 0.0041 20.4 5.9 75 15-94 5-80 (99)
72 PF05640 NKAIN: Na,K-Atpase In 31.0 1.6E+02 0.0035 24.0 5.6 45 45-89 36-80 (200)
73 PF03142 Chitin_synth_2: Chiti 30.1 3.1E+02 0.0067 25.7 8.1 17 83-99 471-487 (527)
74 MTH00001 ND4L NADH dehydrogena 29.0 2.1E+02 0.0046 20.2 5.7 75 15-94 5-80 (99)
75 PF02932 Neur_chan_memb: Neuro 28.9 1.9E+02 0.0042 21.4 5.8 31 65-95 52-82 (237)
76 PF06724 DUF1206: Domain of Un 28.7 38 0.00083 22.4 1.5 21 12-32 47-67 (73)
77 KOG4556 Predicted membrane pro 28.2 2.3E+02 0.005 22.7 5.9 44 44-87 32-75 (205)
78 MTH00180 ND4L NADH dehydrogena 27.8 2.2E+02 0.0048 20.1 5.9 75 15-94 5-80 (99)
79 KOG3950 Gamma/delta sarcoglyca 27.8 65 0.0014 27.2 3.0 26 70-95 36-61 (292)
80 PF15471 TMEM171: Transmembran 27.4 65 0.0014 27.6 2.9 49 6-54 22-76 (319)
81 KOG3646 Acetylcholine receptor 27.1 1.9E+02 0.004 26.7 6.0 89 5-97 234-324 (486)
82 PF15471 TMEM171: Transmembran 27.1 74 0.0016 27.3 3.2 23 8-30 111-133 (319)
83 COG2245 Predicted membrane pro 26.7 3.3E+02 0.0072 21.7 8.0 21 13-33 28-48 (182)
84 KOG3955 Heparan sulfate 6-O-su 26.2 53 0.0011 28.4 2.2 54 128-194 182-243 (361)
85 PRK08388 putative monovalent c 25.5 1.5E+02 0.0032 21.9 4.3 45 14-58 4-48 (119)
86 PF11014 DUF2852: Protein of u 24.0 72 0.0016 23.6 2.4 22 8-29 14-36 (115)
87 PRK12661 putative monovalent c 24.0 1.5E+02 0.0033 22.6 4.2 49 12-62 3-52 (140)
88 COG4298 Uncharacterized protei 23.1 1.1E+02 0.0025 21.4 3.0 23 9-31 17-39 (95)
89 PF06645 SPC12: Microsomal sig 22.4 1.2E+02 0.0026 20.5 3.1 13 72-84 37-49 (76)
90 PF08507 COPI_assoc: COPI asso 21.9 2.6E+02 0.0056 20.8 5.2 44 11-55 6-50 (136)
91 COG4682 Predicted membrane pro 21.9 2.4E+02 0.0051 21.2 4.7 20 48-67 85-104 (128)
92 PF12304 BCLP: Beta-casein lik 21.9 2.6E+02 0.0057 22.5 5.3 10 49-58 51-60 (188)
93 PF09680 Tiny_TM_bacill: Prote 21.9 80 0.0017 16.7 1.6 11 79-89 10-20 (24)
94 PF07423 DUF1510: Protein of u 21.4 1.1E+02 0.0025 25.1 3.3 29 5-33 10-38 (217)
95 PRK01741 cell division protein 21.3 52 0.0011 28.9 1.3 18 12-29 4-25 (332)
96 TIGR01732 tiny_TM_bacill conse 21.0 1.1E+02 0.0024 16.5 2.1 12 78-89 11-22 (26)
97 PF15202 Adipogenin: Adipogeni 20.3 67 0.0014 21.6 1.4 18 140-157 48-65 (81)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=215.08 Aligned_cols=170 Identities=18% Similarity=0.296 Sum_probs=131.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhHhheeecCCc--chhh--hhh--hHHHHHHHHHHHHHHhhhhhhhccCchhhHHHH
Q 029336 2 GVSNNITAVLNFIALLCSIPIIASGIWLASKPDN--ECIH--LFR--WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYL 75 (195)
Q Consensus 2 ~~~k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~--~~~~--~~~--~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~ 75 (195)
++.||+++++|+++|++|++++++|+|++.++.. .... +.. ..++++|.+++++|++||+||.|||+|+|.+|+
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~ 86 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF 86 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence 6899999999999999999999999999998631 1110 122 228999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeecCCCc--c-ccccccccccccc-ch---hhhHHHhcccccCcccccceeccCCcCCCcc
Q 029336 76 CVMAILIVLLLVVLVFAFVVTRPDGS--Y-YVPGRAYKEYRLD-KF---SSWLRDHVVDSKNWNKIRACLADTDTCSKLS 148 (195)
Q Consensus 76 ~~l~vl~i~el~~~i~~~~~~~~~~~--~-~~~~~~~~~Y~~~-d~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~ 148 (195)
+++++++++|++++++++++++++++ + +..++.++.|+++ |. .|.+|++++ |||+ ++|+
T Consensus 87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~---------CCG~-----~~~~ 152 (237)
T KOG3882|consen 87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELK---------CCGV-----NGYS 152 (237)
T ss_pred HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhcc---------CCcC-----CCch
Confidence 99999999999999999999988776 3 3455667778776 32 399999999 9999 9998
Q ss_pred ccccchhhhhhcCC-CCCCCCCCCCCCCCcCCChhhHhhhhcccccc
Q 029336 149 QQYVTADQFFSAHI-SPLQGTRTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 149 Dw~~~~~~~~~~~~-~p~~~g~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
||.+. ... .|.+||.+ ..+.....-....+++.||.+
T Consensus 153 ~~~~~------~~~~vP~SCC~~---~~~~~~~~~~~~~~~~~GC~~ 190 (237)
T KOG3882|consen 153 DYFNC------SSNNVPPSCCKR---TRRQKFPQDVPDNIYTEGCLE 190 (237)
T ss_pred HHhcC------CCCCCCcccCCC---cccccccccchhhhhccccHH
Confidence 87542 111 56566522 001111123456689999976
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.79 E-value=4.5e-21 Score=152.97 Aligned_cols=137 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHhheee-cCC-cch----hhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHH
Q 029336 3 VSNNITAVLNFIALLCSIPIIASGIWLAS-KPD-NEC----IHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (195)
Q Consensus 3 ~~k~~l~~~N~~f~l~Gi~ll~~Gi~~~~-~~~-~~~----~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~ 76 (195)
|+|++++++|++++++|++++++|+|+.. ... ... .......++++|.++++++++|++|+.+|||+++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 68999999999999999999999999942 211 111 111222367789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhheeeecCCCccc--cc-cccccccccc----chhhhHHHhcccccCcccccceeccCCcCCCccc
Q 029336 77 VMAILIVLLLVVLVFAFVVTRPDGSYY--VP-GRAYKEYRLD----KFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQ 149 (195)
Q Consensus 77 ~l~vl~i~el~~~i~~~~~~~~~~~~~--~~-~~~~~~Y~~~----d~~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~D 149 (195)
++++++++|++++++++.++++..+.. .. ....+.+..+ +..|.+|++++ |||. ++++|
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~---------CCG~-----~~~~d 146 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFE---------CCGV-----NSPDD 146 (221)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT-----------SS-----TTCHH
T ss_pred chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheeccccccc---------ccCC-----CCCcc
Confidence 999999999999999999887654411 11 0111222222 12288999999 9999 99999
Q ss_pred cccc
Q 029336 150 QYVT 153 (195)
Q Consensus 150 w~~~ 153 (195)
|...
T Consensus 147 ~~~~ 150 (221)
T PF00335_consen 147 WFTS 150 (221)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9654
No 3
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=99.05 E-value=2.9e-11 Score=87.63 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=53.7
Q ss_pred heeeecCCCc--ccccccccccccccc-h---hhhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh---cCC
Q 029336 92 AFVVTRPDGS--YYVPGRAYKEYRLDK-F---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS---AHI 162 (195)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~Y~~~d-~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~---~~~ 162 (195)
+|++++++.+ ++.+.+.+++|..++ . -|.+|++|+ |||+ ++|+||..+ .|++ ...
T Consensus 1 ~~v~~~~v~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~ 64 (105)
T cd03163 1 GYVYRAKVEDELNPSIDKVFNKYNGTNAESRAVDYLQRQLQ---------CCGI-----HNYTDWENT--PWFKESKNNS 64 (105)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCc---------ccCC-----CCHHHHhhc--hhhhcCCCCc
Confidence 3567776655 344556677776432 2 299999999 9999 999999765 4443 234
Q ss_pred CCCCCC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336 163 SPLQGT--RTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 163 ~p~~~g--~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
.|.+|| +...|+..... ...+++.||.+
T Consensus 65 vP~SCC~~~~~~C~~~~~~----~~~i~~~GC~~ 94 (105)
T cd03163 65 VPLSCCKETFTSCTGSLTQ----PKDLYQEGCEA 94 (105)
T ss_pred cCcCccCCCCCCcccCCCC----CCchhhhccHH
Confidence 688888 23357643221 12478999975
No 4
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=99.04 E-value=2.8e-11 Score=87.35 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=54.9
Q ss_pred eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCC
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~ 166 (195)
|++++++.+ ++.+.+++++|..+ +.+ |.+|++|+ |||+ ++|+||..+ .+++....|.+
T Consensus 1 ~v~r~~i~~~l~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~vP~S 64 (104)
T cd03161 1 FVFRHEIKGTFLRTYNEAVSNYNGDDERSDAVDTVQRTLH---------CCGV-----ENYTDWLNS--PYFLEKGIPLS 64 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcCc---------CcCC-----CChhhhhcc--ccccCCCcCcc
Confidence 356666554 34555667777643 222 89999999 9999 999999765 44433457888
Q ss_pred CCC-CCCCCCCcCC-ChhhHhhhhcccccc
Q 029336 167 GTR-TASCGATTRV-NSATIAALAKLVCWE 194 (195)
Q Consensus 167 ~g~-p~~C~~~~~~-~t~~~~~~~~~~c~~ 194 (195)
||. +..|+....+ .+.-...+|+.||.+
T Consensus 65 CC~~~~~C~~~~~~~~~~~~~~i~~~GC~~ 94 (104)
T cd03161 65 CCKNRSDCSPQDLKNLTKAATKVYQQGCFT 94 (104)
T ss_pred cccCCCCCCccccccccccccccchhccHH
Confidence 883 3357643221 112234588999975
No 5
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=98.97 E-value=8.6e-11 Score=84.28 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=51.8
Q ss_pred eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCC
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~ 166 (195)
|++++++.+ ++.+.+++++|+.+ +.+ |.+|++|+ |||+ ++|+||..+ .+......|.+
T Consensus 1 ~v~r~~v~~~i~~~l~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~vP~S 64 (99)
T cd03166 1 YVFRDKVMSEFNDSFNQMISNYNKTNDFRKILDRMQKDLK---------CCGA-----NNYTDWENI--PSLDTDSVPDS 64 (99)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------ccCC-----CChhhhhcc--cCCCCCCCCcC
Confidence 355665554 34455667777644 222 89999999 9999 999999754 22223456888
Q ss_pred CC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336 167 GT--RTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 167 ~g--~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
|| +...|+.... ...+|+.||++
T Consensus 65 CC~~~~~~C~~~~~-----~~~~y~~GC~~ 89 (99)
T cd03166 65 CCINVTKGCGINFD-----EKVIHLEGCVT 89 (99)
T ss_pred ccCcCCCCcccCCC-----ccchHHhcCHH
Confidence 87 3345764321 23578999975
No 6
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=98.95 E-value=1.2e-10 Score=86.60 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=54.3
Q ss_pred eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-------
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS------- 159 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~------- 159 (195)
|++++++++ ++.+.+++++|..+ +++ |.+|++|+ |||+ ++|+||..+ .++.
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~lQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~~ 64 (119)
T cd03158 1 FIFSNQTIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFK---------CCGG-----DDYRDWSKN--MYFNCSSPNPE 64 (119)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHcc---------CCCC-----CChhhcccc--cccccCCCCCc
Confidence 356666554 34556667776543 322 99999999 9999 999999754 4432
Q ss_pred cCCCCCCCC-CC-------CCCCCCcCCC--hhhHhhhhcccccc
Q 029336 160 AHISPLQGT-RT-------ASCGATTRVN--SATIAALAKLVCWE 194 (195)
Q Consensus 160 ~~~~p~~~g-~p-------~~C~~~~~~~--t~~~~~~~~~~c~~ 194 (195)
....|.+|| .+ ..|+...... +.-...+|+.||.+
T Consensus 65 ~~~vP~SCC~~~~~~~~~~~~C~~~~~~~~~~~~~~~i~~~GC~~ 109 (119)
T cd03158 65 ACGVPYSCCIRAKDQEVINTMCGYGVQNLERLEASKLIYTRGCID 109 (119)
T ss_pred CCCcCcCcccCCCCccccccCcCCCcccccchhhcCcccccchHH
Confidence 124688888 22 2476532111 22345689999985
No 7
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=98.92 E-value=1.7e-10 Score=86.06 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=51.4
Q ss_pred eecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhc-------C
Q 029336 95 VTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-------H 161 (195)
Q Consensus 95 ~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~-------~ 161 (195)
+++++++ .+.+.+++++|..+ +.+ |.+|++|+ |||+ ++|+||..+ .|+.. .
T Consensus 3 ~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~~~~ 66 (120)
T cd03167 3 LWGPLQDGLEHTLRLAIAHYQDDPDLRFLIDQVQLGLQ---------CCGA-----SSYQDWQQN--LYFNCSSPGVQAC 66 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc---------CCCC-----CChHHhccc--ccccCCCCCCCCC
Confidence 4444433 23445566666543 222 99999999 9999 999999754 44431 2
Q ss_pred CCCCCCC--C-------CCCCCCCcCCC--hhhHhhhhcccccc
Q 029336 162 ISPLQGT--R-------TASCGATTRVN--SATIAALAKLVCWE 194 (195)
Q Consensus 162 ~~p~~~g--~-------p~~C~~~~~~~--t~~~~~~~~~~c~~ 194 (195)
..|.+|| + +..|+...... +.....+|+.||.+
T Consensus 67 ~vP~SCC~~~~~~~~~~~~~C~~~~~~~~~~~~~~~iy~~GC~~ 110 (120)
T cd03167 67 SLPASCCIDPREDGAVVNDQCGFGALGLDEDAAQRVVHLGGCGP 110 (120)
T ss_pred CCCcCccCCCccccccccCCCCCCccccccchhcccchhccCHH
Confidence 4677777 2 23576432211 23445689999975
No 8
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=98.92 E-value=1.4e-10 Score=86.32 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-------
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS------- 159 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~------- 159 (195)
|++++++++ ++.+.++++.|..+ +.+ |.+|++|+ |||+ ++|+||..+ .++.
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~D~iQ~~l~---------CCG~-----~~~~DW~~~--~~~~~~~~~~~ 64 (121)
T cd03159 1 FVFKDWIKDQLTEFLNNNIRAYRDDIDLQNLIDFLQEYWQ---------CCGA-----RGPDDWNLN--IYFNCTDSNPS 64 (121)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcc---------CCCC-----CChHHhccc--ccccccCCCCC
Confidence 456666654 34556677777643 332 99999999 9999 999999755 4432
Q ss_pred --cCCCCCCCCC--------CCCCCCCcCCC--hhhHhhhhcccccc
Q 029336 160 --AHISPLQGTR--------TASCGATTRVN--SATIAALAKLVCWE 194 (195)
Q Consensus 160 --~~~~p~~~g~--------p~~C~~~~~~~--t~~~~~~~~~~c~~ 194 (195)
....|.+||. ...|+...... ......+|+.||.+
T Consensus 65 ~~~~~vP~SCC~~~~~~~~~~~~C~~~~~~~~~~~~~~~i~~~GC~~ 111 (121)
T cd03159 65 RERCGVPFSCCVKDPAEDVVNTQCGYDVRKKPELELQHHIHTKGCVQ 111 (121)
T ss_pred CCCCCCCcccccCCcccccccCccCccccccccccccCCchHhhCHH
Confidence 1246777773 33576422100 12234579999975
No 9
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=98.83 E-value=4.8e-10 Score=80.50 Aligned_cols=81 Identities=9% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HhhheeeecCCCc--cccccccccccccc--chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcC
Q 029336 89 LVFAFVVTRPDGS--YYVPGRAYKEYRLD--KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH 161 (195)
Q Consensus 89 ~i~~~~~~~~~~~--~~~~~~~~~~Y~~~--d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~ 161 (195)
||++|++++++.+ ++.+.+++++|..+ +.+ |.+|++|+ |||+ ++|.||.. +
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~---------CCG~-----~~~~d~~~--------~ 58 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELK---------CCGL-----VNGADDWG--------N 58 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC---------CCCC-----CCchhhcc--------C
Confidence 5788999988766 45566777777543 332 99999999 9999 99888853 2
Q ss_pred CCCCCC-C-CCCCCCCCcCCChhhHhhhhcccccc
Q 029336 162 ISPLQG-T-RTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 162 ~~p~~~-g-~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
..|.+| + ++..|+... ..-...+++.||++
T Consensus 59 ~vP~SCcc~~~~~c~~~~---~~~~~~~~~~GC~~ 90 (100)
T cd03154 59 DIPASCNCTTTQSDCVVA---YYGGSNVYKEPCIS 90 (100)
T ss_pred CCCCCCcCCCCCCCcccc---cCCCcCccccccHH
Confidence 467787 4 444454210 11123578889975
No 10
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=98.81 E-value=3.4e-10 Score=82.71 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred heeeecCCCc--cccccccccccccc--chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-----
Q 029336 92 AFVVTRPDGS--YYVPGRAYKEYRLD--KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS----- 159 (195)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~Y~~~--d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~----- 159 (195)
++++++++++ ++.+.+.+++|..+ +.+ |.+|++|+ |||+ ++|+||..+ .++.
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~ 65 (114)
T cd03156 2 ALFFKKDLEDSFKNLLKNNYGNYNSTGDAITSTWNRVMIELK---------CCGV-----NGPTDFVDS--TSFFRQKNE 65 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccc---------CcCC-----CCcHHHHhh--hHHhccCCC
Confidence 4566666554 34556667766532 333 99999999 9999 999999765 4432
Q ss_pred -cCCCCCCCCCCC-------CCCCCcCCChhhHhhhhcccccc
Q 029336 160 -AHISPLQGTRTA-------SCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 160 -~~~~p~~~g~p~-------~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
....|.+||.+. .|+. ...-...+++.||.+
T Consensus 66 ~~~~vP~SCC~~~~~~~~~~~~~~----~~~~~~~~~~~GC~~ 104 (114)
T cd03156 66 PNSPYPESCCKRNSNSQIVDLDCP----KLGSPNSYNKKGCYE 104 (114)
T ss_pred CCCcCCHHHcCcccccccccccCC----CCCcchhhhhcCchH
Confidence 345677777221 1221 112234589999975
No 11
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=98.78 E-value=6.7e-10 Score=85.44 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=32.7
Q ss_pred eeecCCCc--ccccccccccccccc------hh---hhHHHhcccccCcccccceeccCCcCCCccccccc
Q 029336 94 VVTRPDGS--YYVPGRAYKEYRLDK------FS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVT 153 (195)
Q Consensus 94 ~~~~~~~~--~~~~~~~~~~Y~~~d------~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~ 153 (195)
++++++.+ ++.+.++++.|+.++ .+ |.+|++|+ |||+ ++|+||..+
T Consensus 2 v~rd~l~~~L~~~L~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fk---------CCG~-----~~y~DW~~~ 58 (143)
T cd03162 2 IMRGSLEESLKTGLKNAMKFYKDTDTPGRCFLKKTIDMLQIEFQ---------CCGN-----NGYRDWFEI 58 (143)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhcc---------CCCC-----CChhhhhhh
Confidence 45555544 345566777776542 33 99999999 9999 999999653
No 12
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=98.76 E-value=1e-09 Score=81.08 Aligned_cols=83 Identities=8% Similarity=0.092 Sum_probs=52.1
Q ss_pred heeeecCCCc--cccccccccccccc----chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhc--
Q 029336 92 AFVVTRPDGS--YYVPGRAYKEYRLD----KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-- 160 (195)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~Y~~~----d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~-- 160 (195)
+|++++++++ ++.+.+++++|..+ +.+ |.+|++|+ |||+ ++|+||..+ .++..
T Consensus 1 ~~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~ 64 (117)
T cd03160 1 IYFQRDKLKQEMGDIVEKVIQNYGGNPENKTAEEAWDYVQFQLQ---------CCGW-----TGPQDWTDN--SLIKNSS 64 (117)
T ss_pred CceeHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhhCc---------ccCC-----CCchhHHhc--hhccCCC
Confidence 3677777665 34556667776542 222 89999999 9999 999999754 33321
Q ss_pred -CCCCCCCCC-C----------CCCCCCcCCChhhHhhhhcccccc
Q 029336 161 -HISPLQGTR-T----------ASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 161 -~~~p~~~g~-p----------~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
...|.+||. . ..|+....+ ...+|+.||.+
T Consensus 65 ~~~vP~SCC~~~~~~~~~~~~~~~C~~~~~~----~~~iy~~GC~~ 106 (117)
T cd03160 65 EPLYPCSCCNSSATADSPRPSKGFCEAPASL----DWPVYQEGCME 106 (117)
T ss_pred CCCCCHhhhcCCccccccCCCCcccCCCCcc----ccchHHHhhHH
Confidence 246778872 1 135432110 23478999975
No 13
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=98.74 E-value=9.3e-10 Score=78.57 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=48.6
Q ss_pred eeecCCCc--cccccccccccccc---chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCC
Q 029336 94 VVTRPDGS--YYVPGRAYKEYRLD---KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPL 165 (195)
Q Consensus 94 ~~~~~~~~--~~~~~~~~~~Y~~~---d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~ 165 (195)
++++++.+ .+.+.+++++|+.+ +.+ |.+|++|+ |||+ ++|+||..+ ......|.
T Consensus 2 v~r~~~~~~i~~~l~~~~~~y~~~~~~~~~~~~d~~Q~~l~---------CCG~-----~~~~Dw~~~----~~~~~vP~ 63 (98)
T cd03165 2 VFREKVDLTAKDDLKEGLELYGTRNNRGLTNAWDITQTEFR---------CCGV-----TNYTDWYEV----LGENRVPD 63 (98)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCc---------CcCC-----CChhHHHHh----cCCCCCCH
Confidence 45555543 34455667777643 222 89999999 9999 999999653 11234677
Q ss_pred CCC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336 166 QGT--RTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 166 ~~g--~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
+|| .+..|+.... ..+++.||.+
T Consensus 64 SCC~~~~~~C~~~~~------~~~~~~GC~~ 88 (98)
T cd03165 64 SCCQEDSQDCGRNPT------ELWWKTGCYE 88 (98)
T ss_pred hhcCCCccccccCCc------cchHHhhhHH
Confidence 777 3335753211 3478999975
No 14
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=98.71 E-value=2.3e-09 Score=78.22 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=48.9
Q ss_pred eeeecCCCc--cccccccccc-cccc---chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh----
Q 029336 93 FVVTRPDGS--YYVPGRAYKE-YRLD---KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS---- 159 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~-Y~~~---d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~---- 159 (195)
|++++++++ .+.+.+++++ |..+ +.+ |.+|++|+ |||+ ++|+||..+ .|++
T Consensus 1 ~v~~~~~~~~i~~~l~~~i~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~ 64 (110)
T cd03155 1 YTYYQQLEDELKESLKRTMQENYGQSGEEALTLTVDELQQEFK---------CCGS-----NNYTDWQDS--EWINSNEA 64 (110)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCc---------CcCC-----CChhhhhhc--cccccCCC
Confidence 345555554 3445566665 5432 222 99999999 9999 999999765 4542
Q ss_pred -cCCCCCCCC--CCCCCCCCcCCChhhHhhhhc--ccccc
Q 029336 160 -AHISPLQGT--RTASCGATTRVNSATIAALAK--LVCWE 194 (195)
Q Consensus 160 -~~~~p~~~g--~p~~C~~~~~~~t~~~~~~~~--~~c~~ 194 (195)
....|.+|| ....|+.... -...+++ .||.+
T Consensus 65 ~~~~vP~SCC~~~~~~c~~~~~----~~~~~~~~~~GC~~ 100 (110)
T cd03155 65 NGRLVPDSCCKTVVDRCGCLRD----HPSNIYKVEGGCIP 100 (110)
T ss_pred CCCCCCccccCCCCCCcccccC----ChhccccccCChHH
Confidence 123566666 2223542111 1234677 89975
No 15
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=98.65 E-value=8.1e-09 Score=75.25 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=46.9
Q ss_pred cccccccccccc--c-hh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCCCC--CCCCCCC
Q 029336 104 VPGRAYKEYRLD--K-FS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGT--RTASCGA 175 (195)
Q Consensus 104 ~~~~~~~~Y~~~--d-~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~~g--~p~~C~~ 175 (195)
.+.+++++|+.+ + .+ |.+|++|+ |||+ ++|+||..+ ...+..|.+|| +...|+.
T Consensus 15 ~l~~~~~~Y~~~~~~~~~~~~D~iQ~~l~---------CCG~-----~~~~DW~~~----~~~~~vP~SCC~~~~~~C~~ 76 (103)
T cd03157 15 SLKSRMSNFGLQRYQWLTHAWNSFQTEFK---------CCGV-----IYFTDWLEM----TEMEWPPDSCCSNQYPGCAR 76 (103)
T ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHhcc---------CccC-----CChhHHhcc----CCCCCCCccccCCCCCCcCc
Confidence 455667778753 2 22 99999999 9999 999999653 11133799999 3446874
Q ss_pred CcCCChhhHhhhhcccccc
Q 029336 176 TTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 176 ~~~~~t~~~~~~~~~~c~~ 194 (195)
...... ...+|+.||++
T Consensus 77 ~~~~~~--~~~iy~~GC~~ 93 (103)
T cd03157 77 QAHYND--LSDLYQEGCGP 93 (103)
T ss_pred CCCCcc--cccccccchHH
Confidence 321111 23489999975
No 16
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=98.61 E-value=4.2e-09 Score=73.65 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=31.3
Q ss_pred eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccc
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQY 151 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~ 151 (195)
|++++++.+ .+.+.+++++|..+ +.+ |.+|++|+ |||+ ++|+||.
T Consensus 1 ~v~~~~v~~~i~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~ 51 (86)
T cd03164 1 FVYEKKLNNYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQ---------CCGI-----NGTTDWG 51 (86)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhc---------CCCC-----CChhhhC
Confidence 345555543 34555667777543 222 89999999 9999 9999994
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=98.43 E-value=2.4e-08 Score=69.38 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=38.5
Q ss_pred cccccccccccc-ch---hhhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCCCCCCCCCCCCcCC
Q 029336 104 VPGRAYKEYRLD-KF---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRV 179 (195)
Q Consensus 104 ~~~~~~~~Y~~~-d~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~~g~p~~C~~~~~~ 179 (195)
.+.+++++|..+ +. -|.+|++|+ |||+ ++++||... ....|.+|+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~d~iq~~l~---------CCG~-----~~~~D~~~~------~~~vP~SCc~~~~~~----- 68 (90)
T cd03127 14 TLNDAWDEYYVDDDFQEAMDALQSTFE---------CCGV-----NGPTDYLDL------RLLVPSSCCKGTDGN----- 68 (90)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCc---------CcCC-----CChHHHccC------CCCCCHhhcCCCCCC-----
Confidence 344556665432 22 288999998 9999 999999642 244566665222211
Q ss_pred ChhhHhhhhcccccc
Q 029336 180 NSATIAALAKLVCWE 194 (195)
Q Consensus 180 ~t~~~~~~~~~~c~~ 194 (195)
.. ..+++.||.+
T Consensus 69 ~~---~~~~~~GC~~ 80 (90)
T cd03127 69 CG---LNLYTEGCLE 80 (90)
T ss_pred Cc---cchhhHccHH
Confidence 10 3478889975
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=98.23 E-value=1.8e-07 Score=65.18 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=30.4
Q ss_pred eeeecCCCc--cccccccccccccc-c--h---hhhHHHhcccccCcccccceeccCCcCCCcccc
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYRLD-K--F---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQ 150 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d--~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw 150 (195)
|++++++.+ ++.+.+++++|+.+ + . .|.+|++|+ |||+ ++|.||
T Consensus 1 ~v~r~~v~~~i~~~~~~~~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~D~ 52 (84)
T cd03152 1 FSNKDKVVKEVQTFYRQTYAKYKQSRDPPLKETLKAIHFALD---------CCGP-----TGGLEQ 52 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHc---------CCCC-----CCCccc
Confidence 355666544 34455667776653 2 2 288999999 9999 999999
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=96.57 E-value=0.00026 Score=49.28 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=29.5
Q ss_pred eeecCCCc--cccccccccccccc---c---hhhhHHHhcccccCcccccceeccCCcCCCcccccc
Q 029336 94 VVTRPDGS--YYVPGRAYKEYRLD---K---FSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYV 152 (195)
Q Consensus 94 ~~~~~~~~--~~~~~~~~~~Y~~~---d---~~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~ 152 (195)
++++++.. .+.+.+.+++|..+ + ..|.+|++|+ |||. ++|+|+..
T Consensus 2 v~r~~v~~~i~~~l~~~~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~d~~~ 54 (84)
T cd03151 2 INKDQIIKEVQNFYDSAYQDAVTDTRSKGTAVLKTFHSTLD---------CCGK-----GNLTALLS 54 (84)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHhcC---------CCCC-----CCCcchHH
Confidence 45555443 23445566666442 2 2289999999 9999 99999753
No 20
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=88.12 E-value=2.3 Score=34.30 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhh-hhHHHHHHHHHHHHHHhhhh
Q 029336 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLVSLCGFI 61 (195)
Q Consensus 8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~-~~pli~~G~~~~~vs~lG~~ 61 (195)
+-++-.+|+++|.+++.+|..-...-++.+.+.- ....-.+|+.++++|.++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 4455667788888888777765554222222221 11144556666666665543
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.83 E-value=1.2 Score=35.19 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 029336 10 VLNFIALLCSIPIIASGIW 28 (195)
Q Consensus 10 ~~N~~f~l~Gi~ll~~Gi~ 28 (195)
+.+++..++|+++++.|+-
T Consensus 6 i~~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 6 IISIILIILGILLIASGIA 24 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555543
No 22
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=85.69 E-value=1.1 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHhheeecC
Q 029336 11 LNFIALLCSIPIIASGIWLASKP 33 (195)
Q Consensus 11 ~N~~f~l~Gi~ll~~Gi~~~~~~ 33 (195)
-|.+++++|++++++|-++..-+
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 58999999999999999987753
No 23
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=80.38 E-value=6.9 Score=37.14 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHH
Q 029336 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAIL 81 (195)
Q Consensus 8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl 81 (195)
+-+.-+++.++|+++++-|+|+..-+.+ .-.++.|+.+++.+++ .+|++|.-|.+|..+++.-
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t 65 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGT 65 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHH
Confidence 3456678899999999999998776421 1134567777777766 5677777788887766544
No 24
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=80.13 E-value=4.2 Score=37.21 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=33.6
Q ss_pred hhH-HHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHH
Q 029336 42 RWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL 84 (195)
Q Consensus 42 ~~p-li~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~ 84 (195)
.|| .+++=.+.+++.++++.|-.|+|||+++.|.++=++++++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 455 4555677888999999999999999999988765555443
No 25
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=79.45 E-value=3.3 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHH
Q 029336 9 AVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSL 57 (195)
Q Consensus 9 ~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~ 57 (195)
+++-++++++|.+++.+|..+....- +-..--.++++++|+++++=|+
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i-~~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHI-DGDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcccchHHHHHHHHHhccH
Confidence 45566777888888888877665531 0011113457777777776554
No 26
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=75.32 E-value=0.91 Score=34.03 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHH
Q 029336 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL 84 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~ 84 (195)
.+-.++|+..+.+|+.+...... .......| +-.|+..++.|.+|.....|.+++++..+.++-++-++.
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~~~-~~~~~~~p-iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~ 73 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLSSS-VLVYIGYP-IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALL 73 (150)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHhccc-HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 34567788888888876654321 01111223 344888999999999999999999988877665554444
No 27
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=74.89 E-value=7.7 Score=35.06 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=27.9
Q ss_pred hhHH-HHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHH
Q 029336 42 RWPV-VLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAI 80 (195)
Q Consensus 42 ~~pl-i~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~v 80 (195)
.+|. +++=++.+++.+++++|..|.|||.+..+.++=++
T Consensus 208 Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l 247 (418)
T cd07912 208 RWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLF 247 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4553 33334577888889999999999999888554333
No 28
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=69.26 E-value=11 Score=29.75 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCch-------------hhHHHHHHHHHHHHH
Q 029336 45 VVLLGVLVLLVSLCGFIGAYWYKET-------------LLAFYLCVMAILIVL 84 (195)
Q Consensus 45 li~~G~~~~~vs~lG~~Ga~~es~~-------------lL~~y~~~l~vl~i~ 84 (195)
+++.++++++++++-.....|..+. -...|+++++-+++.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~g 87 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLIG 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 6677888888888888887775443 455666666554443
No 29
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=63.01 E-value=35 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhh-hhHHHHHHHHHHHHHHhhhhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLVSLCGFIG 62 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~-~~pli~~G~~~~~vs~lG~~G 62 (195)
|++..+++.+++++|+|...++ +....+ ..-++.-|+.++++++-++.|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~r--nli~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSI--NLIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5677788888999999987532 333322 233677777777777765544
No 30
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=62.30 E-value=26 Score=22.67 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAY 64 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~ 64 (195)
-.++|+++++.|+....... ...+.++|+.+++.++.|+|...
T Consensus 13 R~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 13 RIIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 45667777766665433220 23356778888888888888754
No 31
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=61.35 E-value=86 Score=25.31 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHhheeecCC--cchhhhhhhHHHHHHHHHHHHHHhhh
Q 029336 13 FIALLCSIPIIASGIWLASKPD--NECIHLFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~~--~~~~~~~~~pli~~G~~~~~vs~lG~ 60 (195)
-.|..+|+..+.-|.|+..+.. .+.+-.+..|....|++++..++.=.
T Consensus 43 ~~f~~lG~~~litGl~~~~TWPLPgsYNIlFgd~~~lfGv~lL~~~~~l~ 92 (191)
T PF06168_consen 43 PFFGALGLFALITGLWGTFTWPLPGSYNILFGDPWLLFGVLLLSAGLALY 92 (191)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCcccchHhhhHHHHHHHHHHHHHHHH
Confidence 3466888888888999988742 23333445666677777777776533
No 32
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=61.22 E-value=40 Score=24.34 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHH--hhh
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVL--VFA 92 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~--i~~ 92 (195)
..+++.++.++|++-...+.+-..-+.+.-++.-.+-+-++++--..|....+ .|.++.+.+-..|.++| ++.
T Consensus 7 ~l~laa~LF~IGl~Gv~~rrN~i~~LmSiElmlNAvnl~~Va~~~y~~~~~gQ-----vfaifvitvAAaE~aVGLailv 81 (100)
T COG0713 7 YLILAALLFTIGLYGLLTRRNLIVMLMSIELMLNAVNLNFVAFSSYLGDLDGQ-----VFAIFVITVAAAEAAVGLAILV 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887655432211122233366777778888887777776655 46666777788887665 444
Q ss_pred eeeec
Q 029336 93 FVVTR 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
..||+
T Consensus 82 ~~yR~ 86 (100)
T COG0713 82 ALYRR 86 (100)
T ss_pred HHHHc
Confidence 45554
No 33
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=60.63 E-value=87 Score=25.16 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhH-HHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHH
Q 029336 7 ITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLL 85 (195)
Q Consensus 7 ~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~p-li~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~e 85 (195)
-+++++++++++..+-++.++....+.+ +...-..+- .-.+ -++.+++|..|.-|++.-+|..|.+..++.-+.=
T Consensus 39 ~l~~~h~ll~l~~~a~v~~~~L~~i~~~-~~p~p~~Wey~~~l---S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~p 114 (186)
T PF07086_consen 39 KLILFHALLWLLMAAKVSVDILLEISEL-QIPSPYQWEYIWCL---SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLP 114 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCChhHHHHHHHH---HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887777766444421 111111111 1222 3445566666667777778888877666654554
Q ss_pred HHHHhhhe
Q 029336 86 LVVLVFAF 93 (195)
Q Consensus 86 l~~~i~~~ 93 (195)
++.|....
T Consensus 115 l~~g~~~~ 122 (186)
T PF07086_consen 115 LIYGAMYY 122 (186)
T ss_pred HHHHHHHH
Confidence 55555443
No 34
>PF15125 TMEM238: TMEM238 protein family
Probab=60.39 E-value=42 Score=22.21 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhh
Q 029336 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFI 61 (195)
Q Consensus 8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~ 61 (195)
.+.+-++|=++|++++-.|+..-.. +..-++-.|.++++.|+++..
T Consensus 6 ~f~laV~fD~vGl~~Ll~GiFa~l~--------f~D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 6 FFWLAVVFDVVGLVMLLTGIFAPLD--------FYDFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hhHHHHHHHHhhHHHHHHHHhcchh--------HHHHHHHHhHHHHHHHHHHHH
Confidence 3446677888888888888865432 123356778888888887754
No 35
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=59.97 E-value=21 Score=28.12 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHhheeecCCcchhh-hhhhHHHHHHHHHHHHHHhhh
Q 029336 11 LNFIALLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 11 ~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~-~~~~pli~~G~~~~~vs~lG~ 60 (195)
.|++..++..+++++|+|+..++ ++.+ .+...++.-|+.+++++.-+-
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~r--nLir~iiGl~il~~~vnLlii~~G~~ 51 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLER--SLTRMLLGLLLIGNGVNLLILTAGGP 51 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57788888889999999988753 3333 333336777777777766543
No 36
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=59.38 E-value=43 Score=21.27 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=33.0
Q ss_pred HHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCc
Q 029336 18 CSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (195)
Q Consensus 18 ~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~ 68 (195)
.|+..+.+|+++...++. ......+.+|..+++.|..-...+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~~----~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA----SLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578888888888776521 11222577888888888888888887543
No 37
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=57.18 E-value=15 Score=23.01 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 029336 40 LFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 40 ~~~~pli~~G~~~~~vs~lG~ 60 (195)
....|.+.+|..+++.+.++.
T Consensus 23 i~~lP~~~~Gi~Lii~g~v~r 43 (49)
T PF11384_consen 23 IQALPAILIGIGLIISGGVGR 43 (49)
T ss_pred hhccHHHHHhHHHHhhhhhhh
Confidence 445788899998888877653
No 38
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.87 E-value=8.4 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHhheeecCCcchhhhhh-------hHHHHHHHHHHHHHHhh
Q 029336 13 FIALLCSIPIIASGIWLASKPDNECIHLFR-------WPVVLLGVLVLLVSLCG 59 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~-------~pli~~G~~~~~vs~lG 59 (195)
+++.+.|++++..|.-...+..++..+.++ .-.++.|++..++++.+
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHhh
Confidence 445566666666664222211112222221 11677788888888764
No 39
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=54.84 E-value=49 Score=21.83 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHh
Q 029336 3 VSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLC 58 (195)
Q Consensus 3 ~~k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~l 58 (195)
+.|.+=-.+.++.+++|...+.++.+.... ....+.+|+.++++|.+
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i~it~F~~n~---------~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFINITAFLINQ---------IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 345555577788888888888888765432 13367777777777765
No 40
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=52.85 E-value=46 Score=23.49 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhh-hhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhe
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAF 93 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~ 93 (195)
..+++..++.+|+|....+ .+.... ...-++..|+.+.+++.....+ + ..=..+.+..+++-..|.++|....
T Consensus 7 ~~~~~~~lf~iGl~~~~~~-~~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~-~~~~~l~l~~ivi~~~E~algLsll 80 (100)
T PRK05715 7 YLILAAILFCIGLVGLLLR-RNAIVVLMSIELMLNAVNLNFVAFSSYLG----D-LDGQVFAFFVITVAAAEAAIGLAIL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888865542 222222 2223667777777766654432 1 1112344455566667777765444
Q ss_pred e
Q 029336 94 V 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 81 v 81 (100)
T PRK05715 81 L 81 (100)
T ss_pred H
Confidence 4
No 41
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=52.06 E-value=11 Score=33.91 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhhhccCchhhHHHHHHHHH
Q 029336 50 VLVLLVSLCGFIGAYWYKETLLAFYLCVMAI 80 (195)
Q Consensus 50 ~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~v 80 (195)
.+.+++.+++++|..|+|||++..+.++=++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll 224 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLL 224 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHH
Confidence 4667788889999999999998766554433
No 42
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=50.80 E-value=57 Score=26.17 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCc
Q 029336 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (195)
Q Consensus 14 ~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~ 68 (195)
.+.+.|++++.+|++....+-.+ .......+|..+++.|.+=..++..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~s----~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAIS----TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888888888877654100 0112456677777777777777666554
No 43
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=48.93 E-value=67 Score=22.81 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHhheeecCCcchhh-hhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhee
Q 029336 16 LLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (195)
Q Consensus 16 ~l~Gi~ll~~Gi~~~~~~~~~~~~-~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~~ 94 (195)
.+++..+..+|++....+++ .-. ....-++..|+.+++++.....+-..... ..+..+.+++-+.|.++|....+
T Consensus 7 ~~~~~~lf~iGl~g~l~~rn-ll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algLsllv 82 (101)
T CHL00015 7 LILSAYLFSIGIYGLITSRN-MVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGLAIVS 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677778876664322 222 22333777788888877776544221111 23444445566677766654444
No 44
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=48.61 E-value=1e+02 Score=22.46 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhh
Q 029336 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIG 62 (195)
Q Consensus 14 ~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~G 62 (195)
.+.+++..++++|+|....+.+-.......-++.-|+.++++++-...|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rrnli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKKNLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4667788889999997664322222233334777888888888865544
No 45
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=44.92 E-value=56 Score=23.72 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG 59 (195)
|+++.+...+++++|+|+..++ +-........++..|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~-nlir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSR-SVVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788888999999987753 2222233334677777777776654
No 46
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=44.53 E-value=1.6e+02 Score=25.42 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccC
Q 029336 9 AVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYK 67 (195)
Q Consensus 9 ~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es 67 (195)
...-=+....|+.++++|+-...+.+.+-........+..|..++.++....--..++.
T Consensus 252 ~~y~Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~~~ 310 (354)
T PF06772_consen 252 WIYLHLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNKRR 310 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444677889999999987666532111111112244778888888877666555543
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.55 E-value=68 Score=25.11 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 029336 45 VVLLGVLVLLVSLCG 59 (195)
Q Consensus 45 li~~G~~~~~vs~lG 59 (195)
.+++|+++++.|+.+
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555544444444
No 48
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=42.11 E-value=1.3e+02 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhh
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIG 62 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~G 62 (195)
.++++.+++.+|+|....+++-........++.-|+.++++++-...|
T Consensus 5 ~~~~~~~Lf~iG~~gll~~rnli~~ligleim~~avnL~lv~~g~~~~ 52 (112)
T PRK07375 5 IYALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIAIGYRSG 52 (112)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 456667788888886554322222223334777788888888765544
No 49
>PF00420 Oxidored_q2: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; InterPro: IPR001133 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents NADH:ubiquinone oxidoreductase, chain 4L, as well as NADH-quinone oxidoreductase (1.6.99.5 from EC). In eukaryotes, these enzymes are usually found in either mitochondria or chloroplasts as part of the respiratory-chain NADH dehydrogenase (also known as complex I or NADH-ubiquinone oxidoreductase), an oligomeric enzymatic complex []. However, they are also found in bacteria [] and archaea [] where they are annotated as NuoK subunit.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_G.
Probab=41.62 E-value=1.1e+02 Score=20.92 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHhheeecCCcchhh-hhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhee
Q 029336 16 LLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (195)
Q Consensus 16 ~l~Gi~ll~~Gi~~~~~~~~~~~~-~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~~ 94 (195)
.+.+..++..|++....+ .+... ....-++..|+.+..+...... +...-..+....+++-+.|.++|....+
T Consensus 3 ~~~~~~lf~~gl~~~~~~-~~ll~~Li~lE~m~~~v~l~~~~~~~~~-----~~~~~~~~~l~~l~~~v~e~algLsllv 76 (95)
T PF00420_consen 3 LFVAFFLFFIGLYGILTR-RHLLRILISLELMMLGVFLLLVFMGYFS-----NDPIPQALILTFLVISVCESALGLSLLV 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHH---BHHHHHHHHHHHHHHHHHHHHHHHHHT-----T-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777665542 22222 2222366667776666665443 2222223344444555577766655544
No 50
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=41.30 E-value=1.5e+02 Score=22.22 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHhheeec
Q 029336 10 VLNFIALLCSIPIIASGIWLASK 32 (195)
Q Consensus 10 ~~N~~f~l~Gi~ll~~Gi~~~~~ 32 (195)
.++-++..+|.++++.|+-....
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA 53 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVA 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888866554
No 51
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=41.09 E-value=1.9e+02 Score=23.41 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHhheeecCCc----chh---hhh--hhHHHHHHHHHHHHHHhhhhhhhcc
Q 029336 13 FIALLCSIPIIASGIWLASKPDN----ECI---HLF--RWPVVLLGVLVLLVSLCGFIGAYWY 66 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~~~----~~~---~~~--~~pli~~G~~~~~vs~lG~~Ga~~e 66 (195)
+++.++|++..++|+.-..+++. |++ +.+ +.++.+.|..+++.+..|......|
T Consensus 3 ~~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~ 65 (196)
T PF06770_consen 3 IILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITSK 65 (196)
T ss_pred chhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888999877666421 222 111 3347888999999999888776643
No 52
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=40.01 E-value=39 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhh
Q 029336 5 NNITAVLNFIALLCSIPIIASGIW 28 (195)
Q Consensus 5 k~~l~~~N~~f~l~Gi~ll~~Gi~ 28 (195)
+|.+..+.++.+++|+++++.+|-
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666666666667666666663
No 53
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=38.61 E-value=71 Score=23.50 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~ 60 (195)
+.+..+...+++++|+|+..++ +-........++..|+.+++++.-+.
T Consensus 2 ~~~~~~~~~~L~~~G~ylll~r-nlik~iigl~i~~~~v~L~~v~~g~~ 49 (113)
T PRK08600 2 EILMIIVIGILTAIAVYLILSK-SLLRIIIGTTLLSHGANLLLLTMGGL 49 (113)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456667777888999987754 22222333346777777777766543
No 54
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=38.55 E-value=98 Score=23.08 Aligned_cols=29 Identities=34% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHh-hhhhhhccCchhhHH
Q 029336 45 VVLLGVLVLLVSLC-GFIGAYWYKETLLAF 73 (195)
Q Consensus 45 li~~G~~~~~vs~l-G~~Ga~~es~~lL~~ 73 (195)
+..+|.++.+++++ +.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 45667776666654 777888877755444
No 55
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=38.28 E-value=20 Score=26.74 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 029336 45 VVLLGVLVLLV 55 (195)
Q Consensus 45 li~~G~~~~~v 55 (195)
++++|+++++=
T Consensus 87 f~V~G~L~FiP 97 (124)
T KOG4753|consen 87 FFVLGILLFIP 97 (124)
T ss_pred EehhhhHhccc
Confidence 34445554443
No 56
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=36.99 E-value=79 Score=23.29 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~ 60 (195)
|.+..+...+++++|+|+..++ +-........++.-|+.++++++-..
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~r-nli~~ligl~im~~avnL~~v~~g~~ 49 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRR-SIVKLVIGLILLGNAANLLIFTVGRL 49 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5567778888999999988643 22222233336667777777776543
No 57
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=36.93 E-value=2e+02 Score=25.59 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=6.2
Q ss_pred hhHHHhcc
Q 029336 119 SWLRDHVV 126 (195)
Q Consensus 119 d~lQ~~~~ 126 (195)
+|+++.-.
T Consensus 270 ~Wl~~~~~ 277 (367)
T PF09971_consen 270 KWLSKNRN 277 (367)
T ss_pred HHHHhcCC
Confidence 89988754
No 58
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=36.55 E-value=35 Score=22.65 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=16.6
Q ss_pred HHHHHHHHH---HHHHHHHHhHh
Q 029336 8 TAVLNFIAL---LCSIPIIASGI 27 (195)
Q Consensus 8 l~~~N~~f~---l~Gi~ll~~Gi 27 (195)
+..+|++++ +.|+.++++|-
T Consensus 1 l~~ln~lwl~~~l~~l~v~tigP 23 (77)
T PF04854_consen 1 LVVLNLLWLLFTLAGLPVFTIGP 23 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899988 99999888886
No 59
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=36.40 E-value=1.6e+02 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhheeec
Q 029336 6 NITAVLNFIALLCSIPIIASGIWLASK 32 (195)
Q Consensus 6 ~~l~~~N~~f~l~Gi~ll~~Gi~~~~~ 32 (195)
.+..+.+.+++++.++.+++++|.+.+
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~ 29 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVD 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999998887
No 60
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=35.91 E-value=1.8e+02 Score=21.65 Aligned_cols=12 Identities=42% Similarity=0.863 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 029336 45 VVLLGVLVLLVS 56 (195)
Q Consensus 45 li~~G~~~~~vs 56 (195)
.++.|+..+++.
T Consensus 71 ~i~~gil~~lip 82 (124)
T PF14387_consen 71 NIALGILVILIP 82 (124)
T ss_pred HHHHHHHHHHhh
Confidence 344444444433
No 61
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.50 E-value=2.2e+02 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhheeec
Q 029336 5 NNITAVLNFIALLCSIPIIASGIWLASK 32 (195)
Q Consensus 5 k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~ 32 (195)
+-++-++-.++.++|..+..+|..-...
T Consensus 5 ~~~~~il~~ill~lG~~f~ligaIGllR 32 (145)
T PRK12586 5 KEIFSLIAAIMILLGSIIALISAIGIVK 32 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566677888888877777765544
No 62
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=33.20 E-value=76 Score=23.81 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~ 60 (195)
++++.+...+++++|+|+..++ +-....+...++.-|+.+++++.-+.
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~r-nlir~iigl~il~~avnLlii~~g~~ 49 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSR-HIIRILFGLALLGNAVNLLIFTAGRL 49 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4567778888899999988754 22222333336666777776665543
No 63
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=33.19 E-value=2.2e+02 Score=21.60 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhHhheeec
Q 029336 15 ALLCSIPIIASGIWLASK 32 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~ 32 (195)
+.++|..++-+|+.-..+
T Consensus 2 l~ivG~IL~Lial~~is~ 19 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISD 19 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568899999999987766
No 64
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=33.14 E-value=96 Score=22.87 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG 59 (195)
+.+..+...+++++|+|+..++ +-........++..|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~r-nlir~iigl~il~~avnL~lv~~g~ 48 (114)
T PRK09094 2 ELVLALAIGVLTASGVWLLLRP-RTFQVILGLSLLSYAVNLFIFAMGR 48 (114)
T ss_pred chHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677789999988754 2222333334677777777776654
No 65
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=32.93 E-value=52 Score=18.98 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 029336 45 VVLLGVLVLLVSLCGFIGAYWY 66 (195)
Q Consensus 45 li~~G~~~~~vs~lG~~Ga~~e 66 (195)
-+++|.+++++++-|.....++
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5778889999999888777654
No 66
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=32.29 E-value=48 Score=24.10 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=13.0
Q ss_pred cccccccccccccc-c-h-hhhHHHhcc
Q 029336 102 YYVPGRAYKEYRLD-K-F-SSWLRDHVV 126 (195)
Q Consensus 102 ~~~~~~~~~~Y~~~-d-~-~d~lQ~~~~ 126 (195)
+....+..++|+.. | . .|-+|++++
T Consensus 61 ~MTy~~Q~k~Ye~a~~~~~~~~lqkRle 88 (104)
T PF11460_consen 61 KMTYMQQRKDYEEAVDQLTNEELQKRLE 88 (104)
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344445556543 1 1 266888875
No 67
>COG3374 Predicted membrane protein [Function unknown]
Probab=32.25 E-value=76 Score=25.66 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHhheeecCC--cchhhhhhhHHHHHHHHHHHHHHh
Q 029336 15 ALLCSIPIIASGIWLASKPD--NECIHLFRWPVVLLGVLVLLVSLC 58 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~--~~~~~~~~~pli~~G~~~~~vs~l 58 (195)
+..+|+..+..|+|+..... .+.+-.+..|....|++++.++..
T Consensus 47 ~~~lG~~~~itGl~g~~tWPLPgSyNIlF~Dp~lllGi~ll~~ais 92 (197)
T COG3374 47 AAGLGIFILITGLWGEFTWPLPGSYNILFYDPYLLLGIVLLSVAIS 92 (197)
T ss_pred HHHHHHHHHHHHHHhheeecCCCccceeecChHHHHHHHHHHHHHH
Confidence 44566666666666665531 122222334555556665555554
No 68
>PRK10209 acid-resistance membrane protein; Provisional
Probab=32.16 E-value=2.5e+02 Score=22.19 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 029336 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYW 65 (195)
Q Consensus 14 ~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~ 65 (195)
.+.+.|++.+.+|+.....+... . ....+.+|..+++-|+....++.+
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~---~-~~~~~~~g~~ll~~Gi~~l~~~~~ 70 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVS---G-DALSTVVGILLICSGIALIVGLFA 70 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999998887765211 0 112356788888888877776554
No 69
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.00 E-value=2.6e+02 Score=22.23 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHH
Q 029336 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLV 87 (195)
Q Consensus 8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~ 87 (195)
++.+.++.|+++++-+.+|---....+ +...-+.+. ..=+.-++-+++|..+.-|++.-.|..|.+.+++..+.-+.
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d-~v~~py~we--y~~~~SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHD-QVPMPYQWE--YVWALSLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcc-cCCCchhHH--HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888876642222111 111111111 11122355677788788888888888888888887765555
Q ss_pred HHh
Q 029336 88 VLV 90 (195)
Q Consensus 88 ~~i 90 (195)
.+.
T Consensus 117 ~~~ 119 (183)
T KOG4054|consen 117 YGV 119 (183)
T ss_pred Hhc
Confidence 443
No 70
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.81 E-value=74 Score=26.49 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 029336 45 VVLLGVLVLLVSLCGFIGAYWY 66 (195)
Q Consensus 45 li~~G~~~~~vs~lG~~Ga~~e 66 (195)
+++.|+++++++++=.+=--|+
T Consensus 64 LVG~Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 64 LVGSGVALLLLSICLSIRDKRR 85 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 7888999998888644333333
No 71
>MTH00192 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=31.39 E-value=1.9e+02 Score=20.43 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhh-hhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhe
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAF 93 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~ 93 (195)
+.+++..+...|++.....+++.-.. ...-.+..|+.+.++.+....+-.. =..+.++++.+.+.|.++|....
T Consensus 5 ~l~~~~~lf~~g~~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~~-----g~~~~l~~l~~a~cEaalGLsll 79 (99)
T MTH00192 5 YLLVSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLL-----GIIFSLMVLTVAAAESAIGLAIL 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777877665421222111 2222677777766666654442211 12355556667778877765544
Q ss_pred e
Q 029336 94 V 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 80 v 80 (99)
T MTH00192 80 V 80 (99)
T ss_pred H
Confidence 4
No 72
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=31.01 E-value=1.6e+02 Score=23.97 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHH
Q 029336 45 VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVL 89 (195)
Q Consensus 45 li~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~ 89 (195)
-|.+-.+-+++-++|..||..-++..+..|.+-..+-+.--+.+.
T Consensus 36 PIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfii 80 (200)
T PF05640_consen 36 PILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFII 80 (200)
T ss_pred HHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHH
Confidence 344556666666889999999999999999988887766655443
No 73
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=30.09 E-value=3.1e+02 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.7
Q ss_pred HHHHHHHhhheeeecCC
Q 029336 83 VLLLVVLVFAFVVTRPD 99 (195)
Q Consensus 83 i~el~~~i~~~~~~~~~ 99 (195)
+.-+.+-+.+|.+-|.+
T Consensus 471 ~~n~vLpiYSfwn~DDF 487 (527)
T PF03142_consen 471 FFNFVLPIYSFWNFDDF 487 (527)
T ss_pred HHHhHhhheeEEEeccc
Confidence 34455666666665544
No 74
>MTH00001 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=28.98 E-value=2.1e+02 Score=20.19 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhh-hhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhe
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAF 93 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~ 93 (195)
+.+++..+..+|++......++.-.. ...-.+..++.+.+.......+.... ..+..+.+.+.+.|.++|....
T Consensus 5 ~l~~~~~lf~~gl~g~~~~r~~ll~~LlslE~mll~v~~~~~~~~~~~~~~~g-----~~~~l~~l~~aacEaalGLsll 79 (99)
T MTH00001 5 YLILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIE-----QIFTIMGLTIAAAESAIGLAIM 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777877654421222222 12225666666555554444322211 2345555667778877766555
Q ss_pred e
Q 029336 94 V 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 80 v 80 (99)
T MTH00001 80 V 80 (99)
T ss_pred H
Confidence 4
No 75
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.86 E-value=1.9e+02 Score=21.40 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=22.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHhhheee
Q 029336 65 WYKETLLAFYLCVMAILIVLLLVVLVFAFVV 95 (195)
Q Consensus 65 ~es~~lL~~y~~~l~vl~i~el~~~i~~~~~ 95 (195)
.+.+.++..|+.++++++.+-+..+++.+..
T Consensus 52 s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 52 SYAKPLDGWYFICTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccccchhhhHHHHhhhhhhhh
Confidence 4567888888888888877777666666655
No 76
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=28.68 E-value=38 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHhheeec
Q 029336 12 NFIALLCSIPIIASGIWLASK 32 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~ 32 (195)
..+++++|+.++++|+|...+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999997765
No 77
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=28.21 E-value=2.3e+02 Score=22.74 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHH
Q 029336 44 PVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLV 87 (195)
Q Consensus 44 pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~ 87 (195)
.-|..-.+=+++-++|..|+...++..+.+|..-+.+-+-.-+.
T Consensus 32 apilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwNvf 75 (205)
T KOG4556|consen 32 APILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWNVF 75 (205)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHhHH
Confidence 34555666677778888999999999999999888776555443
No 78
>MTH00180 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=27.82 E-value=2.2e+02 Score=20.07 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHhheeecCCcchhhh-hhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhe
Q 029336 15 ALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAF 93 (195)
Q Consensus 15 f~l~Gi~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~ 93 (195)
++++|..+...|++.......+.-.. ...-++..++.+..+......+.... ..+..+.+.+.+.|.++|....
T Consensus 5 ~l~~~~~lf~~gl~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~~g-----~~~~l~~l~~aacEaalGLsll 79 (99)
T MTH00180 5 YLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIG-----QIFTIMILTVAAAESAIGLAIL 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788887664421122111 22225666666555554433322110 1345555666778877776555
Q ss_pred e
Q 029336 94 V 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 80 V 80 (99)
T MTH00180 80 V 80 (99)
T ss_pred H
Confidence 4
No 79
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=27.79 E-value=65 Score=27.19 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheee
Q 029336 70 LLAFYLCVMAILIVLLLVVLVFAFVV 95 (195)
Q Consensus 70 lL~~y~~~l~vl~i~el~~~i~~~~~ 95 (195)
+|++|..+|++++++-++..++.+-.
T Consensus 36 cLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 36 CLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66888889999999999999887653
No 80
>PF15471 TMEM171: Transmembrane protein family 171
Probab=27.36 E-value=65 Score=27.58 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhheeecCC-cchhhhh--hhH---HHHHHHHHHH
Q 029336 6 NITAVLNFIALLCSIPIIASGIWLASKPD-NECIHLF--RWP---VVLLGVLVLL 54 (195)
Q Consensus 6 ~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~-~~~~~~~--~~p---li~~G~~~~~ 54 (195)
++|++|-.+++..|+++-.+|.+.-.... .++.-.+ ..| .+++|++++.
T Consensus 22 FFLfvFGavllCvG~lLsIfgfqaC~ye~l~dCs~vLKi~GP~cAvvGLg~ViLA 76 (319)
T PF15471_consen 22 FFLFVFGAVLLCVGVLLSIFGFQACQYETLSDCSMVLKIAGPSCAVVGLGAVILA 76 (319)
T ss_pred ehhHHHhHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhccchhhhhcchhheeh
Confidence 46778888888888888888877654432 2333332 344 4445555544
No 81
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.14 E-value=1.9e+02 Score=26.72 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhheeecCCcchhhhh--hhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHH
Q 029336 5 NNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLF--RWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILI 82 (195)
Q Consensus 5 k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~--~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~ 82 (195)
|.+.+.||++.-.+-+.++++=.+.+-- + ..++.. ...++.+.+++.++|-. ..+..|+..+++.|+-..++++
T Consensus 234 RTLyYgfNlIiP~lLIs~m~lLgFtlpp-D-~gEKitL~iTilLsvc~FL~mvse~--~PpTSeaVPllg~fFsc~m~iv 309 (486)
T KOG3646|consen 234 RTLYYGFNLIIPSLLISLMSLLGFTLPP-D-AGEKITLQITILLSVCFFLTMVSEM--TPPTSEAVPLLGAFFSCCMFIV 309 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccccCc-c-ccceeeeeeehHHHHHHHHHHHHhh--cCCccccccHHHHHHHHHHHHH
Confidence 4577889988654444433222222221 1 111111 12244444555555543 5788999999999999999888
Q ss_pred HHHHHHHhhheeeec
Q 029336 83 VLLLVVLVFAFVVTR 97 (195)
Q Consensus 83 i~el~~~i~~~~~~~ 97 (195)
.+-+++.+.++-++.
T Consensus 310 ~~SvvfTv~vLn~h~ 324 (486)
T KOG3646|consen 310 AASVVFTVIVLNLHH 324 (486)
T ss_pred HhhheeEEEEEeeec
Confidence 887777766665544
No 82
>PF15471 TMEM171: Transmembrane protein family 171
Probab=27.13 E-value=74 Score=27.26 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhee
Q 029336 8 TAVLNFIALLCSIPIIASGIWLA 30 (195)
Q Consensus 8 l~~~N~~f~l~Gi~ll~~Gi~~~ 30 (195)
..+|-|+|+..|+++-.+|+|+=
T Consensus 111 ~LIFGFLFLTSGmLISvLGiWVP 133 (319)
T PF15471_consen 111 FLIFGFLFLTSGMLISVLGIWVP 133 (319)
T ss_pred HHHHHHHHHhhhhhhhhheeeec
Confidence 45788999999999999999974
No 83
>COG2245 Predicted membrane protein [Function unknown]
Probab=26.69 E-value=3.3e+02 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHhheeecC
Q 029336 13 FIALLCSIPIIASGIWLASKP 33 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~ 33 (195)
.++-++|.+++-+|+++.++.
T Consensus 28 ~ilSlVG~VLvlval~~iS~~ 48 (182)
T COG2245 28 WILSLVGLVLVLVALYMISKQ 48 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999988874
No 84
>KOG3955 consensus Heparan sulfate 6-O-sulfotransferase [Cell wall/membrane/envelope biogenesis; Carbohydrate transport and metabolism]
Probab=26.15 E-value=53 Score=28.36 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=33.3
Q ss_pred ccCcc--cccceec-----cCCcCCCccccccc-hhhhhhcCCCCCCCCCCCCCCCCcCCChhhHhhhhcccccc
Q 029336 128 SKNWN--KIRACLA-----DTDTCSKLSQQYVT-ADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 128 ~~~w~--~~~CCG~-----~~~~c~~~~Dw~~~-~~~~~~~~~~p~~~g~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
..+|- ..-|||. +-..|-..+||+.- ..+| -+|-++..|+-=-.+.+.-+||||
T Consensus 182 gatw~~s~h~c~g~~~~~~elp~c~~~~~WsGctLqEF-------------mdCPYNLAnNRQMLadLSLVGCYn 243 (361)
T KOG3955|consen 182 GATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEF-------------MDCPYNLANNRQMLADLSLVGCYN 243 (361)
T ss_pred cchhhhhhhhcCCCCCCccccCCCCCCCccCCccHHHH-------------hcCchhhhhhHHHhhhcceeeeec
Confidence 34453 3469997 34567777788653 2233 246666665433566677789987
No 85
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.48 E-value=1.5e+02 Score=21.88 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHh
Q 029336 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLC 58 (195)
Q Consensus 14 ~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~l 58 (195)
+..+++.+++++|+|....+++-........++.-|+.++++++-
T Consensus 4 ~~~~~~~~Lf~iGlygil~~rnlir~ligl~im~~av~L~lv~~g 48 (119)
T PRK08388 4 FQFITAFLMIALGIYAFLYKRNLIKLILALDLIDSGIHLLLISLG 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566888899999766432222223333367777777777764
No 86
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=24.03 E-value=72 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHH-HHHHHHHHHHHhHhhe
Q 029336 8 TAVLNF-IALLCSIPIIASGIWL 29 (195)
Q Consensus 8 l~~~N~-~f~l~Gi~ll~~Gi~~ 29 (195)
+.++-+ +||-+|+++++.-+|.
T Consensus 14 ~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 14 AMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 4788899988888886
No 87
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.96 E-value=1.5e+02 Score=22.62 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHhheeecCCcchhhh-hhhHHHHHHHHHHHHHHhhhhh
Q 029336 12 NFIALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIG 62 (195)
Q Consensus 12 N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~lG~~G 62 (195)
|++..+...+++++|+|+..++ +.... ...-++.-|+-++++++-..-|
T Consensus 3 ~~~~~~~~~iLf~iGiylllrr--Nlik~liglelm~~avnL~lv~~g~~~g 52 (140)
T PRK12661 3 NFFLSLTIALLFGIGTFLILRR--DMIKVIIGLSIISHAVNLLIVSSGVFEG 52 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3456666777788999966532 33322 2233666677777777665443
No 88
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.08 E-value=1.1e+02 Score=21.42 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHhheee
Q 029336 9 AVLNFIALLCSIPIIASGIWLAS 31 (195)
Q Consensus 9 ~~~N~~f~l~Gi~ll~~Gi~~~~ 31 (195)
+.||-.-+-+++.++++|+|.+-
T Consensus 17 i~f~waafg~s~~m~~~gi~~lP 39 (95)
T COG4298 17 IMFNWAAFGASYFMLGLGIWLLP 39 (95)
T ss_pred HhHHHHHHHHHHHHHHHHhheec
Confidence 46777888888999999999764
No 89
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.40 E-value=1.2e+02 Score=20.51 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 029336 72 AFYLCVMAILIVL 84 (195)
Q Consensus 72 ~~y~~~l~vl~i~ 84 (195)
.+|.....+++.+
T Consensus 37 ~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 37 TFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 90
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.94 E-value=2.6e+02 Score=20.78 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHhheeecCCcchhhhh-hhHHHHHHHHHHHH
Q 029336 11 LNFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLV 55 (195)
Q Consensus 11 ~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~-~~pli~~G~~~~~v 55 (195)
+-++-++.|+++++.|+...... .++...+ ..-.+..|++++..
T Consensus 6 ~r~~~~~~~~~~i~~gi~~l~~~-~~~~~~i~~~Y~i~fg~ll~~~ 50 (136)
T PF08507_consen 6 FRILNIIAGILLILAGILSLFNS-FSFSSFILGVYCILFGLLLILA 50 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777655542 1222222 11255556665544
No 91
>COG4682 Predicted membrane protein [Function unknown]
Probab=21.89 E-value=2.4e+02 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhhhhccC
Q 029336 48 LGVLVLLVSLCGFIGAYWYK 67 (195)
Q Consensus 48 ~G~~~~~vs~lG~~Ga~~es 67 (195)
+++.++.+|++---=+..|.
T Consensus 85 isigll~vGv~Na~la~sek 104 (128)
T COG4682 85 ISIGLLFVGVWNATLALSEK 104 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455554333333343
No 92
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=21.86 E-value=2.6e+02 Score=22.47 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 029336 49 GVLVLLVSLC 58 (195)
Q Consensus 49 G~~~~~vs~l 58 (195)
|.+-+..|+.
T Consensus 51 gll~I~~GI~ 60 (188)
T PF12304_consen 51 GLLSIICGIV 60 (188)
T ss_pred HHHHHHHhHH
Confidence 3333333333
No 93
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.86 E-value=80 Score=16.70 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 029336 79 AILIVLLLVVL 89 (195)
Q Consensus 79 ~vl~i~el~~~ 89 (195)
+++|++.+++|
T Consensus 10 vVLFILLiIvG 20 (24)
T PF09680_consen 10 VVLFILLIIVG 20 (24)
T ss_pred HHHHHHHHHhc
Confidence 34444444444
No 94
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.38 E-value=1.1e+02 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhheeecC
Q 029336 5 NNITAVLNFIALLCSIPIIASGIWLASKP 33 (195)
Q Consensus 5 k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~ 33 (195)
|..-.+||+++.++.++++.++..+++..
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheecC
Confidence 44567899999999988888888877743
No 95
>PRK01741 cell division protein ZipA; Provisional
Probab=21.31 E-value=52 Score=28.86 Aligned_cols=18 Identities=39% Similarity=0.767 Sum_probs=9.1
Q ss_pred HHHHHHHHHH----HHHhHhhe
Q 029336 12 NFIALLCSIP----IIASGIWL 29 (195)
Q Consensus 12 N~~f~l~Gi~----ll~~Gi~~ 29 (195)
|.+|.++|++ |++-|+|.
T Consensus 4 n~iliILg~lal~~Lv~hgiWs 25 (332)
T PRK01741 4 NTILIILGILALVALVAHGIWS 25 (332)
T ss_pred eehHHHHHHHHHHHHHHhhhhh
Confidence 4555555543 44456664
No 96
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.03 E-value=1.1e+02 Score=16.50 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 029336 78 MAILIVLLLVVL 89 (195)
Q Consensus 78 l~vl~i~el~~~ 89 (195)
++++|++.++++
T Consensus 11 ivVLFILLIIig 22 (26)
T TIGR01732 11 IVVLFILLVIVG 22 (26)
T ss_pred HHHHHHHHHHhh
Confidence 344444444443
No 97
>PF15202 Adipogenin: Adipogenin
Probab=20.31 E-value=67 Score=21.60 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=12.2
Q ss_pred cCCcCCCccccccchhhh
Q 029336 140 DTDTCSKLSQQYVTADQF 157 (195)
Q Consensus 140 ~~~~c~~~~Dw~~~~~~~ 157 (195)
|++.|-++..|++.+.+|
T Consensus 48 dsd~c~dwepwsk~pae~ 65 (81)
T PF15202_consen 48 DSDVCFDWEPWSKGPAEF 65 (81)
T ss_pred CcceeecccccccCchHh
Confidence 566778888887764343
Done!