Query 029336
Match_columns 195
No_of_seqs 187 out of 1341
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 98.4 1.5E-08 5.3E-13 70.1 -2.3 71 93-194 1-80 (90)
2 3rko_K NADH-quinone oxidoreduc 60.3 37 0.0013 23.0 8.2 74 16-94 8-81 (100)
3 1rh5_B Preprotein translocase 13.8 1.3E+02 0.0044 19.5 2.6 16 45-60 38-53 (74)
4 2klu_A T-cell surface glycopro 13.0 1.5E+02 0.0051 18.9 2.6 13 46-58 12-24 (70)
5 2ww9_B Protein transport prote 12.4 1.5E+02 0.0051 19.5 2.6 17 45-61 51-67 (80)
6 3mp7_B Preprotein translocase 10.7 1.9E+02 0.0066 17.8 2.6 16 45-60 34-49 (61)
7 1oed_C Acetylcholine receptor 9.8 6.6E+02 0.023 19.8 7.6 83 7-92 2-85 (260)
8 1vf5_F Protein PET M; photosyn 9.4 2.8E+02 0.0096 15.2 2.9 18 10-27 5-22 (35)
9 4aq5_C Acetylcholine receptor 8.2 9.1E+02 0.031 21.0 7.0 87 5-93 245-331 (522)
10 1gib_A MU-conotoxin GIIIB; neu 8.1 1.9E+02 0.0066 14.5 1.5 16 167-182 3-19 (26)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=98.37 E-value=1.5e-08 Score=70.13 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=42.7
Q ss_pred eeeecCCCc--cccccccccccc---cc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCC
Q 029336 93 FVVTRPDGS--YYVPGRAYKEYR---LD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHIS 163 (195)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~Y~---~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~ 163 (195)
|++++++.+ ++.+.+++++|. .+ +.+ |.+|++|+ |||+ ++|+||... ..
T Consensus 1 fv~~~~v~~~l~~~l~~~~~~y~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--------~v 58 (90)
T 1g8q_A 1 FVNKDQIAKDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLD---------CCGS-----STLTALTTS--------VL 58 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---------CCSC-----TTCGGGHHH--------HH
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHhhc---------CCCC-----CChhhhccC--------CC
Confidence 345555543 344556677753 22 222 89999999 9999 999999531 13
Q ss_pred CCCCCCCCCCCCCcCCChhhHhhhhcccccc
Q 029336 164 PLQGTRTASCGATTRVNSATIAALAKLVCWE 194 (195)
Q Consensus 164 p~~~g~p~~C~~~~~~~t~~~~~~~~~~c~~ 194 (195)
|.+||++. .+ ....+++.||.+
T Consensus 59 P~ScC~~~------~~---~~~~~~~~GC~~ 80 (90)
T 1g8q_A 59 KNNLCPSG------SN---IISNLFKEDCHQ 80 (90)
T ss_dssp HTTCSCTT------CC---HHHHHTSCCHHH
T ss_pred CCCCCCCC------CC---CcccCccCCcHH
Confidence 33344211 11 234689999975
No 2
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=60.30 E-value=37 Score=23.03 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHhhhee
Q 029336 16 LLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (195)
Q Consensus 16 ~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~i~~~~ 94 (195)
.+.+..++.+|+|....+++-.......-++..++.+.++.+....+.. .=..+..+.+++-+.|.++|....+
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE~m~l~v~l~l~~~~~~~~~~-----~~~~~~l~~l~~aa~E~alGLallv 81 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQT-----DGQVMYILAISLAAAEASIGLALLL 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888554432222222233366777777666654443311 1112445556666777777655544
No 3
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.77 E-value=1.3e+02 Score=19.46 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 029336 45 VVLLGVLVLLVSLCGF 60 (195)
Q Consensus 45 li~~G~~~~~vs~lG~ 60 (195)
.-++|+.++++|++|+
T Consensus 38 ak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 38 AKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666777777888876
No 4
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=12.99 E-value=1.5e+02 Score=18.91 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 029336 46 VLLGVLVLLVSLC 58 (195)
Q Consensus 46 i~~G~~~~~vs~l 58 (195)
|++|.+.-++.+.
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 4555544433333
No 5
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=12.36 E-value=1.5e+02 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 029336 45 VVLLGVLVLLVSLCGFI 61 (195)
Q Consensus 45 li~~G~~~~~vs~lG~~ 61 (195)
..++|+-++++|++|+.
T Consensus 51 ak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888888873
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.73 E-value=1.9e+02 Score=17.85 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 029336 45 VVLLGVLVLLVSLCGF 60 (195)
Q Consensus 45 li~~G~~~~~vs~lG~ 60 (195)
.-++|+.++++|++|+
T Consensus 34 ak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 34 AKITGLGIILIGLIGM 49 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666677777775
No 7
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=9.77 E-value=6.6e+02 Score=19.81 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-HhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHH
Q 029336 7 ITAVLNFIALLCSIPIIAS-GIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLL 85 (195)
Q Consensus 7 ~l~~~N~~f~l~Gi~ll~~-Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~e 85 (195)
+.+++|++.=.+.+.++.+ |.|+=.+.. ++......+.++..+++.-+---.=...++..++..|+.+-++++.+-
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~~g---ekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s 78 (260)
T 1oed_C 2 LFYVINFITPCVLISFLASLAFYLPAESG---EKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 78 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCCCC---CeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3567787765555554443 445433321 222212223333333333333333344455677888877666665554
Q ss_pred HHHHhhh
Q 029336 86 LVVLVFA 92 (195)
Q Consensus 86 l~~~i~~ 92 (195)
+...++.
T Consensus 79 ~~~tv~v 85 (260)
T 1oed_C 79 IVNCGIV 85 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHhe
Confidence 4444433
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=9.40 E-value=2.8e+02 Score=15.23 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 029336 10 VLNFIALLCSIPIIASGI 27 (195)
Q Consensus 10 ~~N~~f~l~Gi~ll~~Gi 27 (195)
+||......+++++++++
T Consensus 5 If~~A~i~~~LvLvGla~ 22 (35)
T 1vf5_F 5 MLYAALLSFGLIFVGWGL 22 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555554443
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=8.24 E-value=9.1e+02 Score=20.97 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHH
Q 029336 5 NNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL 84 (195)
Q Consensus 5 k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~ 84 (195)
|...+++|+++=.+-+.++.+-.+.+-.. .-++......+.++..++...+-.-.=..-.+..++..|+.+.++++.+
T Consensus 245 ~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d--~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~l 322 (522)
T 4aq5_C 245 KPLFYVINFITPCVLISFLAALAFYLPAE--SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTG 322 (522)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTTHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHH
T ss_pred ccceeeeehhhHHHHHHHHHHheeecCCC--cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhe
Q 029336 85 LLVVLVFAF 93 (195)
Q Consensus 85 el~~~i~~~ 93 (195)
-++..++..
T Consensus 323 Sll~tviVl 331 (522)
T 4aq5_C 323 VVVNCGIVL 331 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHheEE
No 10
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=8.15 E-value=1.9e+02 Score=14.51 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CC-CCCCCCCCcCCChh
Q 029336 167 GT-RTASCGATTRVNSA 182 (195)
Q Consensus 167 ~g-~p~~C~~~~~~~t~ 182 (195)
|| ||-+|....-.+.+
T Consensus 3 cc~~p~~ck~r~ckp~~ 19 (26)
T 1gib_A 3 CCTPPRKCKDRRCKPMK 19 (26)
T ss_dssp SSSSSCCCCSGGGTSST
T ss_pred ccCCCccccccccCccc
Done!