Query 029336
Match_columns 195
No_of_seqs 187 out of 1341
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 18:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g8qa_ a.135.1.1 (A:) CD81 ex 49.3 0.49 3.6E-05 30.8 -2.7 12 119-139 36-47 (90)
2 d1oedc_ f.36.1.1 (C:) Acetylch 34.6 73 0.0053 22.7 7.8 82 8-92 3-85 (260)
3 d1y29a_ g.3.6.2 (A:) Huwentoxi 15.0 25 0.0018 16.7 0.7 7 133-139 15-21 (28)
4 d1rh5b_ f.23.28.1 (B:) Preprot 14.8 60 0.0043 18.5 2.6 16 45-60 27-42 (56)
5 d1q90l_ f.23.24.1 (L:) PetL su 13.4 81 0.0059 15.3 2.7 19 11-29 5-23 (32)
6 d1h6va3 d.87.1.1 (A:367-499) M 8.6 45 0.0033 21.9 0.6 11 128-138 123-133 (133)
7 d1v54m_ f.23.7.1 (M:) Mitochon 7.6 1.5E+02 0.011 15.7 2.5 17 46-62 15-31 (43)
8 d1uoya_ g.3.19.1 (A:) Bubble p 6.5 42 0.0031 19.3 -0.3 20 128-149 40-59 (64)
9 d2bs2c1 f.21.2.1 (C:1-254) Fum 6.0 3.4E+02 0.024 19.5 4.7 16 49-64 173-188 (254)
10 d2hi7b1 a.29.15.1 (B:14-162) D 5.9 3.6E+02 0.026 17.2 4.8 71 13-90 3-76 (149)
No 1
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.27 E-value=0.49 Score=30.84 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=9.2
Q ss_pred hhHHHhcccccCcccccceec
Q 029336 119 SWLRDHVVDSKNWNKIRACLA 139 (195)
Q Consensus 119 d~lQ~~~~~~~~w~~~~CCG~ 139 (195)
..+|+.|+ |||.
T Consensus 36 k~fH~~L~---------CCG~ 47 (90)
T d1g8qa_ 36 KTFHETLD---------CCGS 47 (90)
T ss_dssp HHHHHHHT---------CCSC
T ss_pred HHHHHHHc---------cCCC
Confidence 45677777 9998
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=34.64 E-value=73 Score=22.67 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHHHHH-HHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHH
Q 029336 8 TAVLNFIA-LLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLL 86 (195)
Q Consensus 8 l~~~N~~f-~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el 86 (195)
.+++|+++ .++=.++-.+|.|+-.+. -++......+.++..++...+-.-.=...+...++..|+.+.++++.+-+
T Consensus 3 ~y~~n~~~P~~~~~~l~~~~f~lp~~~---~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~ 79 (260)
T d1oedc_ 3 FYVINFITPCVLISFLASLAFYLPAES---GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred eEEEhHHHHHHHHHHHHHHHeeeCCCC---CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 46777776 233333344556664332 12222122233333444443333333344566778777777766666655
Q ss_pred HHHhhh
Q 029336 87 VVLVFA 92 (195)
Q Consensus 87 ~~~i~~ 92 (195)
+..++.
T Consensus 80 ~~t~~V 85 (260)
T d1oedc_ 80 VNCGIV 85 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555444
No 3
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=14.99 E-value=25 Score=16.73 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=5.3
Q ss_pred cccceec
Q 029336 133 KIRACLA 139 (195)
Q Consensus 133 ~~~CCG~ 139 (195)
++-|||+
T Consensus 15 kipccgv 21 (28)
T d1y29a_ 15 KIPCCGV 21 (28)
T ss_dssp SCCBSSC
T ss_pred cccceee
Confidence 4559998
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.78 E-value=60 Score=18.49 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 029336 45 VVLLGVLVLLVSLCGF 60 (195)
Q Consensus 45 li~~G~~~~~vs~lG~ 60 (195)
..+.|+-++++|++|+
T Consensus 27 a~v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGY 42 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777888888886
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.43 E-value=81 Score=15.30 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhHhhe
Q 029336 11 LNFIALLCSIPIIASGIWL 29 (195)
Q Consensus 11 ~N~~f~l~Gi~ll~~Gi~~ 29 (195)
.+.+=+++|...+.+|+|+
T Consensus 5 ~syvglligal~~tlgiyl 23 (32)
T d1q90l_ 5 TSYVGLLIGALVFTLGIYL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444456666667777764
No 6
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.65 E-value=45 Score=21.91 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=8.4
Q ss_pred ccCccccccee
Q 029336 128 SKNWNKIRACL 138 (195)
Q Consensus 128 ~~~w~~~~CCG 138 (195)
..+|.+.+|||
T Consensus 123 ~~~~~~~~cc~ 133 (133)
T d1h6va3 123 GGDILQSGCCG 133 (133)
T ss_dssp CCCCCCCSCCC
T ss_pred cCCccccCCCC
Confidence 35677888998
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.59 E-value=1.5e+02 Score=15.67 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhh
Q 029336 46 VLLGVLVLLVSLCGFIG 62 (195)
Q Consensus 46 i~~G~~~~~vs~lG~~G 62 (195)
.++|...++++++|=-|
T Consensus 15 ~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHH
Confidence 56788888888876554
No 8
>d1uoya_ g.3.19.1 (A:) Bubble protein {Penicillium brevicompactum [TaxId: 5074]}
Probab=6.55 E-value=42 Score=19.25 Aligned_cols=20 Identities=20% Similarity=0.710 Sum_probs=14.9
Q ss_pred ccCcccccceeccCCcCCCccc
Q 029336 128 SKNWNKIRACLADTDTCSKLSQ 149 (195)
Q Consensus 128 ~~~w~~~~CCG~~~~~c~~~~D 149 (195)
...|..|+-||. ++|++-+|
T Consensus 40 gGkWTEiqDC~~--stC~G~n~ 59 (64)
T d1uoya_ 40 GGKWTEVQDCGS--SSCKGTSN 59 (64)
T ss_dssp TTEEEEEEECSS--SCCEEETT
T ss_pred CCceEEeeecCc--cccccccC
Confidence 456888889988 66776665
No 9
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=6.04 E-value=3.4e+02 Score=19.47 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhhhh
Q 029336 49 GVLVLLVSLCGFIGAY 64 (195)
Q Consensus 49 G~~~~~vs~lG~~Ga~ 64 (195)
-+.++.+.+-|+.|.+
T Consensus 173 ~l~l~av~lH~~~Gl~ 188 (254)
T d2bs2c1 173 LVLLFAVELHGSVGLY 188 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 4455666677777765
No 10
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=5.86 E-value=3.6e+02 Score=17.19 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhheeecCCcchhhhhhhH---HHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHHHHHHH
Q 029336 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWP---VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVL 89 (195)
Q Consensus 13 ~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~p---li~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~el~~~ 89 (195)
++..+.++.+++...++..-.. ..| .+--=...+.+.+++..+...++|.....+..+.++..+.-+..+
T Consensus 3 l~~~~~s~~~l~~A~~~q~~~g-------l~PC~LCi~QR~~~~~i~~~~ll~~~~~~~~~~~~~~~~~~l~~~~G~~~a 75 (149)
T d2hi7b1 3 LLMAFTALALELTALWFQHVML-------LKPCVLCIYERVALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLT 75 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC-------CCCCSHHHHHHHHHHTTTHHHHTTTTSSSSSCTHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 029336 90 V 90 (195)
Q Consensus 90 i 90 (195)
.
T Consensus 76 ~ 76 (149)
T d2hi7b1 76 Y 76 (149)
T ss_dssp H
T ss_pred H
Done!