Query 029338
Match_columns 195
No_of_seqs 237 out of 1333
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 8.6E-20 2.9E-24 130.0 8.7 65 17-82 12-76 (80)
2 3a01_A Homeodomain-containing 99.8 1.2E-19 4.3E-24 132.9 8.5 78 14-92 9-86 (93)
3 2vi6_A Homeobox protein nanog; 99.8 8.8E-20 3E-24 123.8 6.6 61 21-82 2-62 (62)
4 2kt0_A Nanog, homeobox protein 99.8 1.8E-19 6.2E-24 129.1 7.8 64 18-82 18-81 (84)
5 2da3_A Alpha-fetoprotein enhan 99.8 1.4E-19 4.9E-24 128.3 7.2 63 19-82 14-76 (80)
6 2cue_A Paired box protein PAX6 99.8 5.2E-19 1.8E-23 125.9 9.5 64 21-85 6-69 (80)
7 2h1k_A IPF-1, pancreatic and d 99.8 3.4E-19 1.2E-23 121.4 8.0 59 22-81 3-61 (63)
8 1nk2_P Homeobox protein VND; h 99.8 5.4E-19 1.9E-23 125.0 9.4 65 20-85 7-71 (77)
9 2dmu_A Homeobox protein goosec 99.8 5E-19 1.7E-23 122.8 8.5 61 21-82 6-66 (70)
10 1puf_A HOX-1.7, homeobox prote 99.8 8.6E-19 2.9E-23 123.9 9.9 63 20-83 11-73 (77)
11 2hdd_A Protein (engrailed home 99.8 3.8E-19 1.3E-23 120.3 7.6 58 22-80 3-60 (61)
12 2da2_A Alpha-fetoprotein enhan 99.8 3E-19 1E-23 123.8 7.2 62 20-82 5-66 (70)
13 1fjl_A Paired protein; DNA-bin 99.8 6.3E-19 2.1E-23 125.7 9.0 65 18-83 14-78 (81)
14 2cra_A Homeobox protein HOX-B1 99.8 3.3E-19 1.1E-23 123.8 7.3 62 20-82 5-66 (70)
15 2dmq_A LIM/homeobox protein LH 99.8 7.2E-19 2.4E-23 124.9 9.1 63 20-83 5-67 (80)
16 2dms_A Homeobox protein OTX2; 99.8 5E-19 1.7E-23 125.9 8.2 63 20-83 5-67 (80)
17 1ig7_A Homeotic protein MSX-1; 99.8 6.7E-19 2.3E-23 117.7 8.3 57 23-80 1-57 (58)
18 2da1_A Alpha-fetoprotein enhan 99.8 4.5E-19 1.5E-23 122.9 6.9 62 20-82 5-66 (70)
19 1bw5_A ISL-1HD, insulin gene e 99.8 3.9E-19 1.3E-23 122.0 6.5 60 22-82 3-62 (66)
20 1akh_A Protein (mating-type pr 99.8 4.4E-19 1.5E-23 119.8 6.6 60 19-79 2-61 (61)
21 2e1o_A Homeobox protein PRH; D 99.8 1E-18 3.5E-23 121.3 8.6 61 21-82 6-66 (70)
22 1zq3_P PRD-4, homeotic bicoid 99.8 1E-18 3.6E-23 120.7 8.5 61 22-83 2-62 (68)
23 1wh5_A ZF-HD homeobox family p 99.8 5.2E-19 1.8E-23 126.5 6.6 60 20-80 15-78 (80)
24 1jgg_A Segmentation protein EV 99.8 1.3E-18 4.4E-23 117.3 7.9 58 23-81 2-59 (60)
25 2djn_A Homeobox protein DLX-5; 99.8 6.2E-19 2.1E-23 122.4 6.5 62 20-82 5-66 (70)
26 1ftt_A TTF-1 HD, thyroid trans 99.8 1.4E-18 4.8E-23 120.1 8.2 60 22-82 2-61 (68)
27 1ahd_P Antennapedia protein mu 99.8 9.1E-19 3.1E-23 121.1 7.2 60 22-82 2-61 (68)
28 1yz8_P Pituitary homeobox 2; D 99.8 5.2E-19 1.8E-23 122.2 5.6 62 21-83 2-63 (68)
29 2l7z_A Homeobox protein HOX-A1 99.8 1.7E-18 5.9E-23 121.3 8.2 61 21-82 6-66 (73)
30 2m0c_A Homeobox protein arista 99.8 1.3E-18 4.6E-23 121.7 7.5 62 20-82 7-68 (75)
31 3rkq_A Homeobox protein NKX-2. 99.8 1.9E-18 6.4E-23 115.1 7.7 57 22-79 2-58 (58)
32 1b8i_A Ultrabithorax, protein 99.8 1.5E-18 5.2E-23 123.9 7.3 61 21-82 19-79 (81)
33 1uhs_A HOP, homeodomain only p 99.8 2.7E-18 9.4E-23 119.8 8.4 59 23-82 2-61 (72)
34 2r5y_A Homeotic protein sex co 99.8 1.6E-18 5.6E-23 125.4 7.3 63 19-82 25-87 (88)
35 2k40_A Homeobox expressed in E 99.8 1.7E-18 5.7E-23 119.2 6.9 61 23-84 2-62 (67)
36 2hi3_A Homeodomain-only protei 99.7 3.7E-18 1.3E-22 119.5 8.7 59 23-82 3-62 (73)
37 3a02_A Homeobox protein arista 99.7 2E-18 6.8E-23 116.4 7.0 57 25-82 2-58 (60)
38 3nar_A ZHX1, zinc fingers and 99.7 3.2E-18 1.1E-22 125.9 8.5 65 20-85 23-87 (96)
39 3a03_A T-cell leukemia homeobo 99.7 3.2E-18 1.1E-22 114.0 7.6 54 27-81 2-55 (56)
40 1wh7_A ZF-HD homeobox family p 99.7 1.1E-18 3.9E-23 124.8 5.6 60 19-80 14-78 (80)
41 1b72_A Protein (homeobox prote 99.7 2.8E-18 9.7E-23 126.3 7.6 64 20-84 32-95 (97)
42 1x2n_A Homeobox protein pknox1 99.7 6.3E-18 2.1E-22 118.1 8.1 63 20-83 5-70 (73)
43 2ecc_A Homeobox and leucine zi 99.7 5E-18 1.7E-22 120.5 7.6 58 25-83 6-63 (76)
44 2ly9_A Zinc fingers and homeob 99.7 8.9E-18 3E-22 117.5 7.7 60 22-82 6-65 (74)
45 2da5_A Zinc fingers and homeob 99.7 7.8E-18 2.7E-22 118.6 7.2 57 25-82 10-66 (75)
46 2cuf_A FLJ21616 protein; homeo 99.7 1.3E-17 4.4E-22 122.4 8.4 63 20-83 5-82 (95)
47 2da4_A Hypothetical protein DK 99.7 5.5E-18 1.9E-22 120.5 6.0 63 20-82 6-71 (80)
48 1puf_B PRE-B-cell leukemia tra 99.7 1E-17 3.4E-22 117.1 7.0 61 23-84 2-65 (73)
49 2dn0_A Zinc fingers and homeob 99.7 6.9E-18 2.4E-22 119.0 6.2 59 23-82 9-67 (76)
50 1k61_A Mating-type protein alp 99.7 2E-17 6.8E-22 111.3 7.7 54 26-80 2-58 (60)
51 1b72_B Protein (PBX1); homeodo 99.7 2.8E-17 9.5E-22 118.4 8.3 62 23-85 2-66 (87)
52 1du6_A PBX1, homeobox protein 99.7 9.5E-18 3.2E-22 114.3 5.3 58 22-80 3-63 (64)
53 2dmn_A Homeobox protein TGIF2L 99.7 4.8E-17 1.7E-21 116.7 8.4 63 21-83 6-70 (83)
54 2ecb_A Zinc fingers and homeob 99.7 3.4E-17 1.2E-21 119.5 7.6 55 27-82 16-70 (89)
55 1le8_B Mating-type protein alp 99.7 2.4E-17 8.2E-22 118.2 6.6 62 24-86 4-68 (83)
56 1mnm_C Protein (MAT alpha-2 tr 99.7 4.5E-17 1.5E-21 117.5 8.0 59 21-80 26-87 (87)
57 2cqx_A LAG1 longevity assuranc 99.7 1.1E-17 3.7E-22 117.3 4.5 58 23-81 9-67 (72)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 1.5E-17 5E-22 131.2 5.7 62 19-81 84-145 (146)
59 2xsd_C POU domain, class 3, tr 99.7 2.4E-17 8.1E-22 132.4 6.3 65 19-84 96-160 (164)
60 2dmp_A Zinc fingers and homeob 99.7 8E-17 2.8E-21 117.1 8.2 56 26-82 17-72 (89)
61 2da6_A Hepatocyte nuclear fact 99.7 1.5E-16 5E-21 118.7 9.3 63 20-83 4-87 (102)
62 1e3o_C Octamer-binding transcr 99.7 5.7E-17 2E-21 129.4 7.2 61 20-81 99-159 (160)
63 1lfb_A Liver transcription fac 99.7 3.6E-17 1.2E-21 121.5 5.3 66 18-84 5-91 (99)
64 3d1n_I POU domain, class 6, tr 99.7 1E-16 3.5E-21 126.6 8.2 61 19-80 90-150 (151)
65 2l9r_A Homeobox protein NKX-3. 99.7 5.8E-17 2E-21 113.0 5.8 57 26-83 8-64 (69)
66 3nau_A Zinc fingers and homeob 99.7 1.9E-16 6.5E-21 109.4 7.4 52 29-81 11-62 (66)
67 1wi3_A DNA-binding protein SAT 99.7 2E-16 7E-21 109.7 7.4 58 20-78 5-63 (71)
68 1x2m_A LAG1 longevity assuranc 99.7 8.4E-17 2.9E-21 110.7 4.9 49 31-80 9-58 (64)
69 2e19_A Transcription factor 8; 99.6 2E-16 6.8E-21 108.5 5.6 54 26-80 7-60 (64)
70 3l1p_A POU domain, class 5, tr 99.6 2.8E-16 9.7E-21 124.8 6.7 61 20-81 94-154 (155)
71 3k2a_A Homeobox protein MEIS2; 99.6 6.6E-16 2.2E-20 106.7 6.4 60 27-87 3-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 5.1E-16 1.8E-20 123.9 6.5 64 19-83 94-157 (164)
73 1ic8_A Hepatocyte nuclear fact 99.5 2.8E-14 9.7E-19 117.4 4.3 62 18-80 111-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.4 2.9E-13 9.8E-18 98.6 7.8 57 27-84 10-69 (89)
75 2da7_A Zinc finger homeobox pr 99.4 5.9E-13 2E-17 92.7 6.4 46 31-77 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.4 9.1E-13 3.1E-17 110.2 6.7 61 17-78 137-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 2E-12 6.7E-17 113.6 4.9 55 24-79 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 1.5E-10 5.1E-15 71.1 -4.2 23 65-87 1-23 (37)
79 2ys9_A Homeobox and leucine zi 95.2 0.028 9.5E-07 38.7 4.6 43 30-73 14-56 (70)
80 1hjb_A Ccaat/enhancer binding 93.2 0.31 1E-05 34.8 6.8 51 74-127 28-78 (87)
81 1gu4_A CAAT/enhancer binding p 91.7 0.43 1.5E-05 33.3 5.8 48 74-124 28-75 (78)
82 1t2k_D Cyclic-AMP-dependent tr 90.7 1.7 5.8E-05 28.4 7.7 39 85-123 22-60 (61)
83 1ci6_A Transcription factor AT 89.2 1.9 6.6E-05 28.5 7.1 40 84-123 22-61 (63)
84 2jn6_A Protein CGL2762, transp 89.2 0.45 1.6E-05 33.1 4.2 42 26-73 3-46 (97)
85 2wt7_A Proto-oncogene protein 88.4 2.3 8E-05 28.0 7.1 40 84-123 22-61 (63)
86 1gd2_E Transcription factor PA 87.6 2.1 7.2E-05 29.1 6.6 40 84-123 28-67 (70)
87 2dgc_A Protein (GCN4); basic d 85.9 1.4 4.8E-05 29.2 4.9 31 93-123 31-61 (63)
88 2yy0_A C-MYC-binding protein; 85.7 1.6 5.6E-05 28.1 4.9 34 91-124 18-51 (53)
89 2elh_A CG11849-PA, LD40883P; s 85.3 2.1 7.2E-05 29.3 5.8 44 23-72 17-60 (87)
90 1jnm_A Proto-oncogene C-JUN; B 84.2 1.9 6.4E-05 28.3 4.9 38 86-123 23-60 (62)
91 2glo_A Brinker CG9653-PA; prot 84.0 2.1 7.2E-05 27.1 5.0 45 26-72 3-47 (59)
92 2oxj_A Hybrid alpha/beta pepti 83.7 2.3 7.8E-05 25.0 4.4 29 96-124 5-33 (34)
93 2wt7_B Transcription factor MA 83.1 10 0.00035 26.9 9.0 64 61-124 17-87 (90)
94 3c3g_A Alpha/beta peptide with 81.2 3.1 0.00011 24.2 4.3 29 96-124 4-32 (33)
95 3m48_A General control protein 80.8 2.6 8.7E-05 24.6 3.9 29 96-124 4-32 (33)
96 3c3f_A Alpha/beta peptide with 79.7 3.7 0.00013 24.0 4.3 29 96-124 5-33 (34)
97 1hlv_A CENP-B, major centromer 78.9 7.5 0.00026 27.9 7.1 49 25-77 4-52 (131)
98 1gd2_E Transcription factor PA 78.2 4.5 0.00016 27.4 5.2 51 68-119 20-70 (70)
99 1s7o_A Hypothetical UPF0122 pr 77.8 14 0.00049 26.6 8.3 47 28-80 22-68 (113)
100 1dh3_A Transcription factor CR 76.5 11 0.00036 24.2 6.4 32 92-123 22-53 (55)
101 1xsv_A Hypothetical UPF0122 pr 76.5 12 0.0004 26.9 7.5 48 28-81 25-72 (113)
102 3hug_A RNA polymerase sigma fa 75.8 5.5 0.00019 27.2 5.3 47 28-80 37-83 (92)
103 1kd8_B GABH BLL, GCN4 acid bas 75.8 5.2 0.00018 23.7 4.2 29 96-124 5-33 (36)
104 1tc3_C Protein (TC3 transposas 75.1 5.9 0.0002 22.7 4.7 40 28-73 5-44 (51)
105 2bni_A General control protein 74.5 5.2 0.00018 23.4 4.0 28 96-123 5-32 (34)
106 1kd8_A GABH AIV, GCN4 acid bas 72.0 7.4 0.00025 23.0 4.2 29 96-124 5-33 (36)
107 2o8x_A Probable RNA polymerase 71.8 6.2 0.00021 24.9 4.5 47 28-80 15-61 (70)
108 1uo4_A General control protein 71.8 7.8 0.00027 22.7 4.3 29 96-124 5-33 (34)
109 2yy0_A C-MYC-binding protein; 70.5 5.9 0.0002 25.4 4.0 33 84-116 18-50 (53)
110 2hy6_A General control protein 68.2 10 0.00035 22.1 4.2 28 96-123 5-32 (34)
111 1hjb_A Ccaat/enhancer binding 68.0 13 0.00044 26.2 5.7 47 77-123 35-81 (87)
112 2rn7_A IS629 ORFA; helix, all 65.0 18 0.00061 25.1 6.1 47 26-72 4-52 (108)
113 2jee_A YIIU; FTSZ, septum, coi 63.2 27 0.00092 24.3 6.5 11 111-121 53-63 (81)
114 3mzy_A RNA polymerase sigma-H 63.1 12 0.00043 26.9 5.1 46 28-80 109-154 (164)
115 1tty_A Sigma-A, RNA polymerase 62.4 13 0.00043 25.1 4.7 47 28-80 18-68 (87)
116 2wq1_A General control protein 62.2 16 0.00054 21.2 4.2 28 96-123 4-31 (33)
117 1jko_C HIN recombinase, DNA-in 59.7 4.8 0.00017 23.5 1.9 41 28-74 5-45 (52)
118 3vmx_A Voltage-gated hydrogen 59.4 30 0.001 21.7 6.0 40 85-124 4-43 (48)
119 1ku3_A Sigma factor SIGA; heli 59.2 17 0.00059 23.4 4.8 46 28-79 10-59 (73)
120 3c57_A Two component transcrip 58.2 21 0.00073 24.5 5.4 47 27-80 26-72 (95)
121 2r2v_A GCN4 leucine zipper; co 57.7 21 0.00071 20.8 4.2 28 96-123 5-32 (34)
122 1ci6_A Transcription factor AT 57.6 32 0.0011 22.4 5.9 35 81-115 26-60 (63)
123 1fse_A GERE; helix-turn-helix 56.2 28 0.00096 21.9 5.4 48 26-80 9-56 (74)
124 1deb_A APC protein, adenomatou 56.0 17 0.00058 23.2 4.0 31 93-123 4-34 (54)
125 1je8_A Nitrate/nitrite respons 55.4 27 0.00091 23.2 5.4 48 26-80 19-66 (82)
126 2oqq_A Transcription factor HY 55.2 33 0.0011 20.9 5.4 34 90-123 8-41 (42)
127 1p4w_A RCSB; solution structur 55.1 37 0.0013 23.7 6.3 47 26-79 32-78 (99)
128 2p7v_B Sigma-70, RNA polymeras 55.0 19 0.00065 22.8 4.4 51 28-80 5-55 (68)
129 1uii_A Geminin; human, DNA rep 52.5 47 0.0016 23.2 6.2 32 92-123 46-77 (83)
130 2wuj_A Septum site-determining 52.2 17 0.00059 23.3 3.7 31 91-121 26-56 (57)
131 1x3u_A Transcriptional regulat 52.0 14 0.00049 23.8 3.4 45 29-80 17-61 (79)
132 3a2a_A Voltage-gated hydrogen 51.7 33 0.0011 22.2 4.9 42 84-125 10-51 (58)
133 1t2k_D Cyclic-AMP-dependent tr 51.2 45 0.0015 21.3 7.3 32 91-122 21-52 (61)
134 1or7_A Sigma-24, RNA polymeras 49.4 25 0.00086 26.2 5.0 46 29-80 141-186 (194)
135 3hnw_A Uncharacterized protein 48.3 84 0.0029 23.6 8.3 42 82-123 86-127 (138)
136 3ulq_B Transcriptional regulat 48.0 38 0.0013 23.1 5.3 47 24-77 25-71 (90)
137 1go4_E MAD1 (mitotic arrest de 47.2 41 0.0014 24.3 5.4 35 91-125 11-45 (100)
138 1rp3_A RNA polymerase sigma fa 47.1 28 0.00094 26.7 5.0 47 28-80 187-233 (239)
139 1u78_A TC3 transposase, transp 46.9 26 0.0009 24.8 4.5 42 27-74 5-46 (141)
140 1nkp_B MAX protein, MYC proto- 46.6 35 0.0012 23.0 4.9 34 92-125 47-80 (83)
141 1uii_A Geminin; human, DNA rep 46.1 54 0.0019 22.9 5.7 39 83-121 44-82 (83)
142 1jnm_A Proto-oncogene C-JUN; B 45.3 58 0.002 20.8 7.3 37 90-126 20-56 (62)
143 2rnj_A Response regulator prot 44.7 20 0.0007 24.1 3.4 48 26-80 27-74 (91)
144 3lph_A Protein REV; helix-loop 44.3 23 0.00078 24.1 3.4 37 34-85 18-54 (72)
145 3m91_A Proteasome-associated A 44.1 58 0.002 20.5 5.6 34 90-123 14-47 (51)
146 3m9b_A Proteasome-associated A 43.6 39 0.0013 28.3 5.5 35 90-124 59-93 (251)
147 1gu4_A CAAT/enhancer binding p 42.4 64 0.0022 22.0 5.6 36 91-126 35-70 (78)
148 3w03_C DNA repair protein XRCC 42.2 65 0.0022 25.6 6.4 32 91-122 151-182 (184)
149 2hxi_A Putative transcriptiona 41.9 18 0.00061 28.8 3.2 53 24-78 24-77 (241)
150 2j5u_A MREC protein; bacterial 41.9 20 0.00067 29.7 3.5 37 90-126 24-63 (255)
151 2x7l_M HIV REV; nuclear export 41.6 22 0.00074 26.3 3.2 38 34-86 15-52 (115)
152 3m91_A Proteasome-associated A 41.3 65 0.0022 20.3 6.0 37 82-118 13-49 (51)
153 2x48_A CAG38821; archeal virus 40.6 26 0.00087 21.0 3.1 36 31-72 18-53 (55)
154 3s9g_A Protein hexim1; cyclin 40.3 86 0.0029 22.6 6.1 19 101-119 67-85 (104)
155 2jee_A YIIU; FTSZ, septum, coi 39.5 93 0.0032 21.5 6.6 40 83-122 32-71 (81)
156 3fmy_A HTH-type transcriptiona 39.2 36 0.0012 21.8 3.8 41 27-75 9-49 (73)
157 2pmy_A RAS and EF-hand domain- 38.9 27 0.00093 23.0 3.3 46 27-72 19-68 (91)
158 1t6f_A Geminin; coiled-coil, c 37.9 51 0.0017 19.4 3.8 28 93-120 8-35 (37)
159 1go4_E MAD1 (mitotic arrest de 37.6 67 0.0023 23.1 5.3 33 86-118 13-45 (100)
160 3bd1_A CRO protein; transcript 37.6 23 0.00077 23.0 2.6 23 53-75 14-36 (79)
161 1q06_A Transcriptional regulat 37.2 1.2E+02 0.0041 22.1 8.4 36 25-74 35-70 (135)
162 1pdn_C Protein (PRD paired); p 37.0 59 0.002 22.2 5.0 41 27-73 16-56 (128)
163 3m9b_A Proteasome-associated A 36.7 40 0.0014 28.2 4.6 41 80-120 56-96 (251)
164 2xi8_A Putative transcription 36.5 20 0.00068 21.8 2.1 23 53-75 17-39 (66)
165 2r1j_L Repressor protein C2; p 36.5 20 0.0007 21.9 2.2 23 53-75 21-43 (68)
166 3o9x_A Uncharacterized HTH-typ 36.3 41 0.0014 24.0 4.1 41 28-76 70-110 (133)
167 1iuf_A Centromere ABP1 protein 36.3 55 0.0019 24.1 5.0 51 23-74 6-60 (144)
168 3v86_A De novo design helix; c 35.9 40 0.0014 18.2 2.9 22 97-118 5-26 (27)
169 1wt6_A Myotonin-protein kinase 35.7 1.1E+02 0.0037 21.2 6.5 42 83-124 29-70 (81)
170 1no4_A Late, head morphogenesi 34.8 1.1E+02 0.0039 21.2 6.4 43 82-124 30-72 (97)
171 1k78_A Paired box protein PAX5 34.8 52 0.0018 23.8 4.6 41 27-73 31-71 (149)
172 2jpc_A SSRB; DNA binding prote 34.6 40 0.0014 20.4 3.4 27 54-80 17-43 (61)
173 1nlw_A MAD protein, MAX dimeri 34.5 89 0.0031 21.1 5.4 32 92-123 47-78 (80)
174 2wt7_A Proto-oncogene protein 33.9 94 0.0032 19.9 7.6 33 91-123 22-54 (63)
175 1nkp_A C-MYC, MYC proto-oncoge 33.1 57 0.002 22.5 4.2 28 96-123 56-83 (88)
176 3bs3_A Putative DNA-binding pr 33.0 25 0.00086 22.1 2.2 23 53-75 26-48 (76)
177 3a5t_A Transcription factor MA 33.0 14 0.00048 27.0 1.0 60 61-120 27-93 (107)
178 2q0o_A Probable transcriptiona 32.8 69 0.0023 25.2 5.3 48 26-80 173-220 (236)
179 4dzn_A Coiled-coil peptide CC- 32.7 68 0.0023 18.0 4.2 21 99-119 9-29 (33)
180 1zug_A Phage 434 CRO protein; 32.5 24 0.00083 21.7 2.1 24 53-76 19-42 (71)
181 1fi6_A EH domain protein REPS1 31.4 80 0.0027 20.8 4.8 45 28-72 2-50 (92)
182 2k27_A Paired box protein PAX- 31.2 66 0.0022 23.6 4.7 41 27-73 24-64 (159)
183 3gpv_A Transcriptional regulat 31.0 1.6E+02 0.0055 21.8 8.6 36 25-74 51-86 (148)
184 1wlq_A Geminin; coiled-coil; 2 30.8 1.3E+02 0.0044 20.9 5.6 24 88-111 41-64 (83)
185 3lay_A Zinc resistance-associa 30.8 1.6E+02 0.0055 22.9 7.0 18 102-119 116-133 (175)
186 1adr_A P22 C2 repressor; trans 30.5 29 0.00098 21.7 2.2 23 53-75 21-43 (76)
187 1dh3_A Transcription factor CR 30.5 1E+02 0.0035 19.4 4.9 30 86-115 23-52 (55)
188 1l3l_A Transcriptional activat 30.2 85 0.0029 24.6 5.4 47 26-79 171-217 (234)
189 2lv7_A Calcium-binding protein 30.2 1.2E+02 0.0041 20.6 5.6 47 26-72 27-79 (100)
190 2hin_A GP39, repressor protein 30.1 41 0.0014 22.4 3.0 21 53-73 13-33 (71)
191 2b5a_A C.BCLI; helix-turn-heli 29.9 30 0.001 21.8 2.2 23 53-75 26-48 (77)
192 1nkp_B MAX protein, MYC proto- 29.8 53 0.0018 22.1 3.6 31 88-118 50-80 (83)
193 1r69_A Repressor protein CI; g 29.0 31 0.0011 21.1 2.1 24 53-76 17-40 (69)
194 3clo_A Transcriptional regulat 28.9 68 0.0023 25.7 4.7 47 27-80 196-242 (258)
195 3omt_A Uncharacterized protein 28.7 32 0.0011 21.7 2.2 23 53-75 24-46 (73)
196 3i5g_B Myosin regulatory light 28.3 1.3E+02 0.0044 21.8 5.8 40 26-65 7-50 (153)
197 2wiu_B HTH-type transcriptiona 28.2 46 0.0016 21.5 3.0 23 53-75 28-50 (88)
198 2wvr_A Geminin; DNA replicatio 28.0 1.4E+02 0.0048 24.1 6.2 36 84-119 114-149 (209)
199 1nlw_A MAD protein, MAX dimeri 27.8 1E+02 0.0036 20.8 4.8 31 88-118 50-80 (80)
200 2q1z_A RPOE, ECF SIGE; ECF sig 27.6 16 0.00055 27.1 0.6 26 55-80 156-181 (184)
201 1y7y_A C.AHDI; helix-turn-heli 27.2 36 0.0012 21.1 2.2 23 53-75 29-51 (74)
202 3s9g_A Protein hexim1; cyclin 27.2 1.3E+02 0.0045 21.7 5.3 30 91-120 64-93 (104)
203 2zxx_A Geminin; coiled-coil, c 27.0 1.1E+02 0.0039 21.0 4.8 30 86-115 35-64 (79)
204 2wvr_A Geminin; DNA replicatio 26.9 1.3E+02 0.0044 24.4 5.8 36 91-126 114-149 (209)
205 3w03_C DNA repair protein XRCC 26.8 1E+02 0.0035 24.5 5.2 38 87-124 140-177 (184)
206 3jsv_C NF-kappa-B essential mo 26.6 1.5E+02 0.005 21.1 5.5 41 86-126 48-88 (94)
207 3b7h_A Prophage LP1 protein 11 26.3 36 0.0012 21.4 2.1 23 53-75 23-45 (78)
208 3kz3_A Repressor protein CI; f 25.8 37 0.0013 21.9 2.1 24 53-76 28-51 (80)
209 3fiw_A Putative TETR-family tr 25.7 24 0.00082 27.3 1.3 54 23-78 19-73 (211)
210 1a93_B MAX protein, coiled coi 25.6 96 0.0033 18.0 3.6 14 102-115 17-30 (34)
211 1wlq_A Geminin; coiled-coil; 2 25.5 1.5E+02 0.0051 20.6 5.2 33 91-123 37-69 (83)
212 2a6c_A Helix-turn-helix motif; 25.2 45 0.0015 21.8 2.4 23 53-75 34-56 (83)
213 2kpj_A SOS-response transcript 25.1 39 0.0013 22.5 2.2 23 53-75 25-47 (94)
214 3oja_A Leucine-rich immune mol 25.0 2.2E+02 0.0074 24.8 7.6 42 83-124 426-467 (487)
215 3oa7_A Head morphogenesis prot 24.2 1.6E+02 0.0056 23.7 5.9 39 82-120 34-72 (206)
216 2ict_A Antitoxin HIGA; helix-t 24.0 49 0.0017 21.9 2.5 23 53-75 24-46 (94)
217 2ef8_A C.ECOT38IS, putative tr 23.1 47 0.0016 21.1 2.2 23 53-75 26-48 (84)
218 3q4f_C DNA repair protein XRCC 22.8 1.4E+02 0.0047 23.8 5.2 24 97-120 159-182 (186)
219 1nkp_A C-MYC, MYC proto-oncoge 22.8 1.2E+02 0.0042 20.8 4.4 32 88-119 55-86 (88)
220 3s4r_A Vimentin; alpha-helix, 22.7 2E+02 0.0067 20.0 8.3 30 92-121 56-85 (93)
221 2v4h_A NF-kappa-B essential mo 22.6 2.3E+02 0.0078 20.7 7.6 36 89-124 73-108 (110)
222 1irz_A ARR10-B; helix-turn-hel 22.6 1.7E+02 0.0058 19.2 6.2 58 23-80 4-62 (64)
223 1c07_A Protein (epidermal grow 22.4 1.2E+02 0.0041 20.1 4.3 45 28-72 3-51 (95)
224 3oja_B Anopheles plasmodium-re 22.3 2.2E+02 0.0076 25.2 7.2 26 93-118 545-570 (597)
225 2k27_A Paired box protein PAX- 22.2 2.3E+02 0.0078 20.5 6.7 47 26-73 81-134 (159)
226 3f6w_A XRE-family like protein 21.7 51 0.0017 21.1 2.2 23 53-75 30-52 (83)
227 1p9i_A Cortexillin I/GCN4 hybr 21.6 1.1E+02 0.0039 16.8 3.8 20 102-121 9-28 (31)
228 2ve7_C Kinetochore protein NUF 21.2 60 0.002 26.8 2.9 42 83-124 139-180 (250)
229 2k9q_A Uncharacterized protein 21.1 50 0.0017 21.0 2.0 23 53-75 18-40 (77)
230 1etf_B REV peptide; complex (R 20.7 57 0.002 17.9 1.8 13 72-84 7-19 (26)
231 2jml_A DNA binding domain/tran 20.4 52 0.0018 21.7 2.0 20 53-72 8-27 (81)
232 3mq7_A Bone marrow stromal ant 20.3 2.7E+02 0.0091 20.6 7.0 49 77-125 63-111 (121)
233 1lmb_3 Protein (lambda repress 20.0 57 0.002 21.3 2.2 23 53-75 33-55 (92)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=129.98 Aligned_cols=65 Identities=32% Similarity=0.587 Sum_probs=60.1
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 17 RKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 17 ~~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
...++.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||+|||||||+|+|+..
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3455667889999999999999999999 9999999999999999999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=1.2e-19 Score=132.91 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=63.4
Q ss_pred hhhhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 029338 14 EAKRKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDYAQLRA 92 (195)
Q Consensus 14 ~~~~~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~e~~~l~~ 92 (195)
......++.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||+|||||||+|+|+...+.......+
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~ 86 (93)
T 3a01_A 9 YQNRTPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQA 86 (93)
T ss_dssp STTSCCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred cCCCCCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHH
Confidence 3334445567889999999999999999999 99999999999999999999999999999999999766655444433
No 3
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.79 E-value=8.8e-20 Score=123.82 Aligned_cols=61 Identities=31% Similarity=0.468 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 346779999999999999999999 9999999999999999999999999999999999864
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=129.08 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=59.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 18 ~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
..++.++.|+.|+..|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345567889999999999999999999 9999999999999999999999999999999999864
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=128.26 Aligned_cols=63 Identities=25% Similarity=0.442 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.++.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34567889999999999999999999 9999999999999999999999999999999999864
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=5.2e-19 Score=125.90 Aligned_cols=64 Identities=28% Similarity=0.574 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~ 85 (195)
+.++.|++|+.+|+.+||..|..+ +||+..++..||..|||++.||+|||||||+|+|+.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 456789999999999999999999 9999999999999999999999999999999999965443
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=3.4e-19 Score=121.38 Aligned_cols=59 Identities=27% Similarity=0.594 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
.++.|+.||..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46778999999999999999999 999999999999999999999999999999999985
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=5.4e-19 Score=124.96 Aligned_cols=65 Identities=34% Similarity=0.473 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~ 85 (195)
+++++.|++||..|+.+||..|..+ +||+..++..||..|||+++||++||||||+|+|+.+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3457779999999999999999999 9999999999999999999999999999999999866543
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=122.82 Aligned_cols=61 Identities=30% Similarity=0.645 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 456789999999999999999999 9999999999999999999999999999999999864
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=8.6e-19 Score=123.93 Aligned_cols=63 Identities=33% Similarity=0.460 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
++.++.|+.||..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 4457789999999999999999999 99999999999999999999999999999999998654
No 11
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=3.8e-19 Score=120.29 Aligned_cols=58 Identities=38% Similarity=0.669 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.++.|+.||.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46779999999999999999999 99999999999999999999999999999999987
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=123.81 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
++.++.|++||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3557789999999999999999999 9999999999999999999999999999999999854
No 13
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=6.3e-19 Score=125.67 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=58.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 18 ~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
.+++.++.|+.|+..|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|++..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 345567889999999999999999999 99999999999999999999999999999999998643
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=3.3e-19 Score=123.79 Aligned_cols=62 Identities=29% Similarity=0.496 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
++.++.|++||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3457789999999999999999999 9999999999999999999999999999999999854
No 15
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=124.88 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
++.++.|++||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3457789999999999999999999 99999999999999999999999999999999998643
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=5e-19 Score=125.88 Aligned_cols=63 Identities=25% Similarity=0.506 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
++.++.|++|+.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567889999999999999999999 99999999999999999999999999999999998643
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=6.7e-19 Score=117.72 Aligned_cols=57 Identities=33% Similarity=0.531 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
++.|+.||.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678999999999999999999 99999999999999999999999999999999987
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=122.92 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
++.++.|++||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3457789999999999999999999 9999999999999999999999999999999999854
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=3.9e-19 Score=122.03 Aligned_cols=60 Identities=25% Similarity=0.519 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.++.|+.||.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+++|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 56789999999999999999999 9999999999999999999999999999999999854
No 20
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=4.4e-19 Score=119.77 Aligned_cols=60 Identities=37% Similarity=0.595 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
+++.++.|++|+.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34567889999999999999999999 9999999999999999999999999999999975
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1e-18 Score=121.30 Aligned_cols=61 Identities=39% Similarity=0.663 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+.++.|++||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 345678999999999999999999 9999999999999999999999999999999999854
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1e-18 Score=120.73 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
+++.|+.||..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 46789999999999999999999 99999999999999999999999999999999998543
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=5.2e-19 Score=126.46 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFES----ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~----~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
++++|.|+.||.+|+..||..|+. + +||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 456788999999999999999999 8 99999999999999999999999999999999875
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1.3e-18 Score=117.32 Aligned_cols=58 Identities=26% Similarity=0.511 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999 999999999999999999999999999999999974
No 25
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.2e-19 Score=122.43 Aligned_cols=62 Identities=34% Similarity=0.505 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.+.++.|+.||.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3457789999999999999999999 9999999999999999999999999999999999853
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=1.4e-18 Score=120.10 Aligned_cols=60 Identities=33% Similarity=0.540 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+++.|++||..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 46778999999999999999999 9999999999999999999999999999999999864
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=9.1e-19 Score=121.13 Aligned_cols=60 Identities=32% Similarity=0.658 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+++.|+.||.+|+..||..|..+ +||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 36778999999999999999999 9999999999999999999999999999999999864
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.76 E-value=5.2e-19 Score=122.18 Aligned_cols=62 Identities=24% Similarity=0.583 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
+.++.|+.||..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 356789999999999999999999 99999999999999999999999999999999998654
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=1.7e-18 Score=121.26 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+.++.|++||..|+.+||..|..+ +||+..++..||..+||++.||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 457789999999999999999999 9999999999999999999999999999999999853
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=121.70 Aligned_cols=62 Identities=29% Similarity=0.596 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+++++.|++|+..|+.+||..|..+ +||+..++..||..|||++.||++||||||+++|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4557789999999999999999999 9999999999999999999999999999999999854
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=115.08 Aligned_cols=57 Identities=37% Similarity=0.522 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
+++.|+.|+.+|+.+||..|..+ +||+..++..||..|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 35678999999999999999999 9999999999999999999999999999999975
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=1.5e-18 Score=123.93 Aligned_cols=61 Identities=30% Similarity=0.553 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+.++.|+.||.+|+.+||..|..+ +||+..++..||..|||+++||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 456789999999999999999999 9999999999999999999999999999999999854
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.7e-18 Score=119.77 Aligned_cols=59 Identities=24% Similarity=0.548 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~-~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.++|++|+.+|+.+||..|.. + +||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356889999999999999996 8 9999999999999999999999999999999999854
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=1.6e-18 Score=125.40 Aligned_cols=63 Identities=30% Similarity=0.607 Sum_probs=55.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.++.++.|+.||..|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34457789999999999999999999 9999999999999999999999999999999999853
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=119.16 Aligned_cols=61 Identities=30% Similarity=0.506 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhH
Q 029338 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~ 84 (195)
++.|+.||.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5678999999999999999999 999999999999999999999999999999999986543
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=3.7e-18 Score=119.50 Aligned_cols=59 Identities=24% Similarity=0.514 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~-~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.+.|++||.+|+.+||..|.. + +||+..++..||..|||+++||++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999995 8 9999999999999999999999999999999999854
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=2e-18 Score=116.36 Aligned_cols=57 Identities=26% Similarity=0.598 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.|++||.+|+.+||..|..+ +||+..++..||..+||++.||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 47899999999999999999 9999999999999999999999999999999999854
No 38
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=125.87 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~ 85 (195)
...+++|++||.+|+.+||..|..+ +||+..++..||..|||+++||++||||||+|+|+.++..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3445778999999999999999999 9999999999999999999999999999999999976554
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=114.03 Aligned_cols=54 Identities=31% Similarity=0.590 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
+.||.+|+..||..|..+ +||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999 999999999999999999999999999999999984
No 40
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=124.82 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFES-----ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~-----~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.++++|.|+.||.+|+..|| .|.. + +||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34567889999999999999 7999 8 99999999999999999999999999999999875
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.8e-18 Score=126.33 Aligned_cols=64 Identities=31% Similarity=0.497 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~ 84 (195)
.+.++.|+.||.+|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|+...+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 3456779999999999999999999 999999999999999999999999999999999987643
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=6.3e-18 Score=118.12 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~---~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
++.++.|+.|+..|+.+|+..|.. + +||+..++..||..+||++.||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345677899999999999999987 7 99999999999999999999999999999999998654
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5e-18 Score=120.53 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
.|..||.+|+.+|+..|..+ +||+..++.+||..+||++.||+|||||||+|+|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45679999999999999999 99999999999999999999999999999999998543
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=117.54 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.++.|+.||.+|+.+||..|..+ +||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 35678999999999999999999 9999999999999999999999999999999999854
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=118.59 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+|++||.+|+.+||..|..+ +||+..++..||..|||+++||++||||||+++|++.
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQN-PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45679999999999999999 9999999999999999999999999999999999864
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.3e-17 Score=122.37 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------CChhHHHHHHHhhHHHHHHHHh
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------LQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~Lg---------------Lt~rQVkvWFQNRRak~Krkq~ 83 (195)
+++++.|+.|+++|+.+||..|..+ +||+..++..||..|| |++.+|++||||||+++|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999 9999999999999999 9999999999999999998654
No 47
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=120.48 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESE---STKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~---~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
++.++.|+.||.+|+.+||..|..+ ++||+..++.+||..|||++.||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567789999999999999999876 28999999999999999999999999999999999853
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=1e-17 Score=117.08 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhH
Q 029338 23 MKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F---~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~ 84 (195)
++.|++|+..|+.+|+..| ..+ +||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678999999999999999 788 999999999999999999999999999999999986543
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=118.96 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.+.|++||.+|+.+||..|..+ +||+..++..||..|||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 4458899999999999999999 9999999999999999999999999999999999854
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=2e-17 Score=111.32 Aligned_cols=54 Identities=28% Similarity=0.495 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~---~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+++|+.+|+.+|+..|.. + +||+..++..||..+||++.||++||||||+|+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 679999999999999999 8 99999999999999999999999999999999987
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=2.8e-17 Score=118.36 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHH
Q 029338 23 MKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F---~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~ 85 (195)
++.|++|+.+|+.+|+..| ..+ +||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5678999999999999999 788 9999999999999999999999999999999999865443
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=9.5e-18 Score=114.29 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 22 KMKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 22 ~rr~R~~ft~eQ~~~Le~~F---~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.++.|+.|+.+|+.+|+..| ..+ +||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999 788 99999999999999999999999999999999986
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=116.74 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 21 SKMKNKRRFSDEQIRLLESIFESE--STKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~~--~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
++++.|++|+.+|+.+|+..|..+ ++||+..++..||..+||++.||++||||||+|+|+..+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 456778999999999999999873 399999999999999999999999999999999997543
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=3.4e-17 Score=119.49 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
.+||.+|+.+||..|..+ +||+..++.+||..|||+++||+|||||||+||+++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNS-SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 389999999999999999 9999999999999999999999999999999999853
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=2.4e-17 Score=118.18 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHHH
Q 029338 24 KNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHD 86 (195)
Q Consensus 24 r~R~~ft~eQ~~~Le~~F~~---~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~e 86 (195)
+.+++|+.+|+.+|+..|.. + +||+..++..||..+||++.||++||||||+|+|+.....+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 44667999999999999999 8 99999999999999999999999999999999998655443
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=4.5e-17 Score=117.54 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 21 SKMKNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 21 k~rr~R~~ft~eQ~~~Le~~F~~---~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
++++.|++|+.+|+.+|+..|.. + +||+..++..||..+||++.||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34566899999999999999999 8 99999999999999999999999999999999873
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.1e-17 Score=117.34 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIF-ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F-~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
.+.+++++.+|+.+||..| ..+ +||+..++.+||..|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4556788999999999999 888 999999999999999999999999999999999974
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=1.5e-17 Score=131.17 Aligned_cols=62 Identities=31% Similarity=0.428 Sum_probs=55.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
.+++++.|+.|+..|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34557789999999999999999999 999999999999999999999999999999999985
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=2.4e-17 Score=132.37 Aligned_cols=65 Identities=25% Similarity=0.272 Sum_probs=52.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~ 84 (195)
.+++++.|++|+..|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45567889999999999999999999 999999999999999999999999999999999986543
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=117.06 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq 82 (195)
+..||.+|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKS-SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3459999999999999999 9999999999999999999999999999999999753
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=118.75 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh---------------------CCChhHHHHHHHhhHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATEL---------------------GLQPRQVAIWFQNKRARW 78 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~L---------------------gLt~rQVkvWFQNRRak~ 78 (195)
++++|.|+.|++.|+.+||..|..+ +||+..++.+||..| +|++.+|++||||||+++
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4567889999999999999999999 999999999999999 799999999999999999
Q ss_pred HHHHh
Q 029338 79 KSKQI 83 (195)
Q Consensus 79 Krkq~ 83 (195)
|+++.
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98644
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=5.7e-17 Score=129.40 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
.+++|.|+.|+..|+.+||..|..+ +||+..++..||..|||+++||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3567889999999999999999999 999999999999999999999999999999999984
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.67 E-value=3.6e-17 Score=121.46 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=54.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------------hC---CChhHHHHHHHhhHH
Q 029338 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATE------------------LG---LQPRQVAIWFQNKRA 76 (195)
Q Consensus 18 ~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~------------------Lg---Lt~rQVkvWFQNRRa 76 (195)
.+++.++.|+.|++.|+.+||..|..+ +||+..++.+||.. || |++.+|++||||||+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 445677889999999999999999999 99999999999999 88 999999999999999
Q ss_pred HHHHHHhH
Q 029338 77 RWKSKQIE 84 (195)
Q Consensus 77 k~Krkq~~ 84 (195)
++|+++..
T Consensus 84 k~k~k~~~ 91 (99)
T 1lfb_A 84 EEAFRHKL 91 (99)
T ss_dssp TTSCCC--
T ss_pred HHHHhchh
Confidence 99887643
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=126.64 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.++++|.|++|+..|+.+||..|..+ +||+..++..||..|||+++||++||||||+|+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 45567889999999999999999999 99999999999999999999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=112.95 Aligned_cols=57 Identities=35% Similarity=0.531 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
-..+|..|+..||..|..+ +||+..++..||..|||+++||+|||||||+|+|+++.
T Consensus 8 ~~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 3578999999999999999 99999999999999999999999999999999998654
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=109.36 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 29 FSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 29 ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
-|.+|+..||..|..+ +||+..++.+||..+||+++||++||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3689999999999999 999999999999999999999999999999999974
No 67
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2e-16 Score=109.73 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~-~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~ 78 (195)
+.++|.|+.|+.+|+.+|+.+|.. + +||+.+.+..||.+|||++++|+|||||||--.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 356788999999999999999999 8 999999999999999999999999999999643
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=8.4e-17 Score=110.68 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 31 DEQIRLLESIFE-SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 31 ~eQ~~~Le~~F~-~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+.|+.+||..|. .+ +||+..++.+||.+|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 568999999995 56 99999999999999999999999999999999986
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=108.53 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+..++.+|+..||..|..+ +||+..++..||..|||+++||+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3456789999999999999 99999999999999999999999999999998876
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.63 E-value=2.8e-16 Score=124.82 Aligned_cols=61 Identities=23% Similarity=0.461 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 20 kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
++++|+|++|+..|+..||..|..+ +||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3456789999999999999999999 999999999999999999999999999999999973
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=6.6e-16 Score=106.66 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHHHH
Q 029338 27 RRFSDEQIRLLESIFE---SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDY 87 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~---~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~e~ 87 (195)
.+|+.+|+.+|+..|. .+ +||+..++..||..+||+..||++||||||+|+|+...+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 3799999999999999 88 999999999999999999999999999999999987665543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.61 E-value=5.1e-16 Score=123.90 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=54.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHh
Q 029338 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (195)
Q Consensus 19 ~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~ 83 (195)
..+.+|.|+.||..|+.+|+..|..+ +||+..++..||..|||++.||++||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 34557789999999999999999999 99999999999999999999999999999999998543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=2.8e-14 Score=117.42 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=53.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CChhHHHHHHHhhHH
Q 029338 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------------LQPRQVAIWFQNKRA 76 (195)
Q Consensus 18 ~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~Lg---------------------Lt~rQVkvWFQNRRa 76 (195)
..++.+|.|+.|++.|+.+|+..|..+ +||+..+|.+||..|+ |++.+|++||||||+
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 345668889999999999999999999 9999999999999999 999999999999999
Q ss_pred HHHH
Q 029338 77 RWKS 80 (195)
Q Consensus 77 k~Kr 80 (195)
+.|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=98.62 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhH
Q 029338 27 RRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~---~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~ 84 (195)
..|+.+++.+|+..|.. + +||+..++.+||.++||++.||.+||+|+|.|.++...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46899999999999988 6 999999999999999999999999999999999985443
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.9e-13 Score=92.71 Aligned_cols=46 Identities=13% Similarity=0.453 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHH
Q 029338 31 DEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (195)
Q Consensus 31 ~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak 77 (195)
.+|+.+|+.+|..+ ++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 57899999999999 99999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=9.1e-13 Score=110.23 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=53.2
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CChhHHHHHHHhhH
Q 029338 17 RKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------------LQPRQVAIWFQNKR 75 (195)
Q Consensus 17 ~~~kk~rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~Lg---------------------Lt~rQVkvWFQNRR 75 (195)
..+++.+|.|+.|++.|+.+|+..|..+ +||+..+|.+||..|| |++.||++||||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3456678899999999999999999999 9999999999999988 89999999999999
Q ss_pred HHH
Q 029338 76 ARW 78 (195)
Q Consensus 76 ak~ 78 (195)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.28 E-value=2e-12 Score=113.57 Aligned_cols=55 Identities=35% Similarity=0.583 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 24 KNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 24 r~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
+-++.++..|+..|+..|..+ +||+..+|.+||.++||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345689999999999999999 9999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=1.5e-10 Score=71.12 Aligned_cols=23 Identities=43% Similarity=1.015 Sum_probs=19.6
Q ss_pred hHHHHHHHhhHHHHHHHHhHHHH
Q 029338 65 RQVAIWFQNKRARWKSKQIEHDY 87 (195)
Q Consensus 65 rQVkvWFQNRRak~Krkq~~~e~ 87 (195)
+||+|||||||+|||+++.+..+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998776443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.028 Score=38.67 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 30 SDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 30 t~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
++.-..+|+.+|... +.+.......|+.+..|+..||+-||-.
T Consensus 14 ~p~~~e~L~~Yy~~h-k~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAH-QQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHT-CCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHh-cccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 344468999999999 9999999999999999999999999954
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.20 E-value=0.31 Score=34.76 Aligned_cols=51 Identities=24% Similarity=0.187 Sum_probs=35.9
Q ss_pred hHHHHHHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhccccc
Q 029338 74 KRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGKSDY 127 (195)
Q Consensus 74 RRak~Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~~~ 127 (195)
+|+|.++++...+ +......|..+|..|+.+...|..|+..|+.+|...+.
T Consensus 28 rrSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3566666555443 34566778888888889999999999999988876544
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.65 E-value=0.43 Score=33.29 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=33.0
Q ss_pred hHHHHHHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 74 KRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 74 RRak~Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
+|++.|+++...+. ......|..++..|+.+...|..|+..|+.+|..
T Consensus 28 krSR~krk~r~~e~---~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 28 RKSRDKAKMRNLET---QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665555443 4556677778888888888888888888877654
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=90.67 E-value=1.7 Score=28.38 Aligned_cols=39 Identities=23% Similarity=0.055 Sum_probs=31.4
Q ss_pred HHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 85 HDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 85 ~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.....+....+.|...+..|..+...|..|+..|+.+|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567777888888888888889999999999888774
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.17 E-value=1.9 Score=28.48 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
......+......|..++..|..+...|..|++.|+.+|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777788888888888899999999999988764
No 84
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.16 E-value=0.45 Score=33.10 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHh-h-cCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 26 KRRFSDEQIRLLESIFE-S-ESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~-~-~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
|..|++++....-..+. . . .....+|..+|+++..|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g------~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG------ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG------SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC------ChHHHHHHHHCcCHHHHHHHHHH
Confidence 35788887765554442 2 2 13568899999999999999753
No 85
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.39 E-value=2.3 Score=27.96 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
......|....+.|...+..|..+...|..++..|..+|.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888888888888888888888888888764
No 86
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.57 E-value=2.1 Score=29.14 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
+.....|......|...+..+..|+..|..++..|...+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666666666777777777777766553
No 87
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.93 E-value=1.4 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 93 NYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 93 ~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
..+.|......|..+|..|..++..|+.+|.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677888888888888887764
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.65 E-value=1.6 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
...+++|+.++..|+.....|..+++.|+..|..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777777777888888888888877764
No 89
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.29 E-value=2.1 Score=29.33 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
++.+..|+.++....-..+... . ...++|+.+|+++..|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--C----CHHHHHHHHCcCHHHHHHHHH
Confidence 3456689998865555556433 2 255789999999999999973
No 90
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.20 E-value=1.9 Score=28.29 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=21.1
Q ss_pred HHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 86 DYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 86 e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
....|....+.|..++..|..+...|..++..|+.+|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666666665553
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.00 E-value=2.1 Score=27.07 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
+..|+++....+...+... ........++|..+|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578998877665555443 22112256899999999999999964
No 92
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.66 E-value=2.3 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..+|..|..|+.+|+++|..
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45566778889999999999999998853
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=83.09 E-value=10 Score=26.93 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHhhHHHH-------HHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 61 GLQPRQVAIWFQNKRARW-------KSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 61 gLt~rQVkvWFQNRRak~-------Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
||+..+|..+=|-||.-. -+.....+...|..+...|..+.+.|..|+..+..+...++..+..
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888887776665321 2233345556677777777777788888888888888777776654
No 94
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.20 E-value=3.1 Score=24.21 Aligned_cols=29 Identities=7% Similarity=0.097 Sum_probs=23.3
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..+|..|..|+.+|+++|..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 35556778889999999999999998853
No 95
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=80.83 E-value=2.6 Score=24.62 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..+|..|..|+.+|++.|..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 35566778889999999999999998753
No 96
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.73 E-value=3.7 Score=24.03 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=23.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..+|..|..|+.+|+.+|..
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 35556778888999999999999998853
No 97
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.88 E-value=7.5 Score=27.88 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHH
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak 77 (195)
+|..||.++...+-..+... ..+.. .+||+.+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 46789999987777776555 44432 368999999999999999876654
No 98
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.19 E-value=4.5 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 029338 68 AIWFQNKRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLN 119 (195)
Q Consensus 68 kvWFQNRRak~Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~ 119 (195)
+.=|..|+... -+.++.....+...+..|..++..|+.++..|..++..|+
T Consensus 20 QRafReRK~~~-i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 20 QRAFRKRKEDH-LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34454433332 3456666777788888888888889999999988887653
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=77.78 E-value=14 Score=26.58 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..++.-.|... . ...++|..+|+++..|+.+...-|.+-++
T Consensus 22 ~L~~~~r~vl~l~y~~g-~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-Y-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-C-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888888876555 1 34678999999999999999877666655
No 100
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=76.55 E-value=11 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=23.9
Q ss_pred HhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 92 ANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 92 ~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.+.+.|......|..||..|..++..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666777788888888888888876653
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=76.50 E-value=12 Score=26.94 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krk 81 (195)
.+++.+..+|.-.|... . .-.++|..+|+++..|+.+...-|.+-+..
T Consensus 25 ~L~~~~r~vl~l~~~~g---~---s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED---Y---SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC---C---CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888888776544 1 346789999999999999988777666653
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=75.82 E-value=5.5 Score=27.16 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|.-.|-.. . ...++|..||++...|+.....-|.+.++
T Consensus 37 ~L~~~~r~vl~l~~~~g-~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-W-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-C-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777788887766444 1 35678999999999999988766665554
No 103
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=75.78 E-value=5.2 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..++..|..++.+|+.++..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 45667788888999999999999988754
No 104
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.07 E-value=5.9 Score=22.68 Aligned_cols=40 Identities=8% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
.++.++...+...+... . ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g---~---s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN---V---SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555433 2 2557899999999999999854
No 105
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.50 E-value=5.2 Score=23.41 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=22.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|....+.|..++..|..|+.+|+.+|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3455667888899999999999999875
No 106
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=72.03 E-value=7.4 Score=23.04 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..++..|..|+.+|+.++..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45566778888999999999999988754
No 107
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.81 E-value=6.2 Score=24.88 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|...|... . ...++|..+|+++..|..+...-+.+-++
T Consensus 15 ~L~~~~r~il~l~~~~g---~---s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG---L---SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC---C---CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57888888888876444 1 34578999999999999988765555554
No 108
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=71.76 E-value=7.8 Score=22.66 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.|....+.|..+|..|..|+.+|+..|..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 34556677888999999999999998753
No 109
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.54 E-value=5.9 Score=25.35 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHH
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQ 116 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~ 116 (195)
..++..|+.+++.|+.++..|.++++.|...+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888888888887777654
No 110
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=68.18 E-value=10 Score=22.13 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|....+.|..+|..|..++.+|+..+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3555667788899999999999998874
No 111
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.95 E-value=13 Score=26.17 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 77 RWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 77 k~Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
+.+-..+......|..++..|..+...|+.|...|..-+.++-+.+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 33444555555666666666666666666666666666665555544
No 112
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=65.00 E-value=18 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCCH-HHHHHHHHHhCCChhHHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESE-STKLEP-RKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~-~~~ps~-~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
+..|++++....-..+... ..+++. .....+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3578888876544444322 012221 3567899999999999999964
No 113
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.25 E-value=27 Score=24.30 Aligned_cols=11 Identities=45% Similarity=0.307 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 029338 111 LLLELQMLNEQ 121 (195)
Q Consensus 111 L~~e~~~l~~~ 121 (195)
|..++++|+..
T Consensus 53 L~~en~qLk~E 63 (81)
T 2jee_A 53 LERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 114
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.09 E-value=12 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|. .|-.. ....++|..+|++...|+.....-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~~g------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG------YSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46667777777 44333 135678999999999999888765555554
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=62.44 E-value=13 Score=25.11 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFE----SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~----~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|...|- .. ....++|..+|++...|+.+...-+.+-+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~------~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP------KTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 478888888888875 22 135678999999999999988766655554
No 116
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.24 E-value=16 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=22.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|....+.+..++..|..|+.+|+.++.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3455667788889999999999998875
No 117
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=59.69 E-value=4.8 Score=23.53 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhh
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNR 74 (195)
.++.++...+...+... . ...+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g---~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG---H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT---C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC---C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 35566655555555433 2 35678999999999999998643
No 118
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=59.41 E-value=30 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.8
Q ss_pred HHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 85 HDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 85 ~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.....++..|+.|......|+.-...+..|+.+|+..|..
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4456788889999888888888888888899999888753
No 119
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.18 E-value=17 Score=23.37 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 28 RFSDEQIRLLESIFE----SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~----~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
.+++.+..+|...|. .. ..-.++|..+|++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~------~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE------HTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578899999988885 22 13457899999999999998765555544
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=58.25 E-value=21 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
..+++.+..+|.-.+.-. ...++|..+|++...|+....+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL-------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 468999999998864333 24678999999999999988766665554
No 121
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=57.71 E-value=21 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=22.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|....+.+..++..|..|+.+|+.+|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3455667788899999999999998875
No 122
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.65 E-value=32 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHH
Q 029338 81 KQIEHDYAQLRANYDSLASGFESLIKEKESLLLEL 115 (195)
Q Consensus 81 kq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~ 115 (195)
...+.....|...+..|......|..|+..|..-+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666665443
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.18 E-value=28 Score=21.87 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
...+++.+..+|..++ .. + ...++|..+|+++..|..++.+-+.+.+.
T Consensus 9 ~~~L~~~e~~il~~~~-~g--~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD--K----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH-cC--C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4568999999998843 22 2 34578999999999999888765555443
No 124
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.04 E-value=17 Score=23.16 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=20.8
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 93 NYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 93 ~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|+.|....+.|+.||..|+.|++.=...|.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~ls 34 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLT 34 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 4677777777777777777777665444443
No 125
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=55.38 E-value=27 Score=23.22 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
-..+++.+..+|.-++.-. ...++|..+|++...|+....+-+.+.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGL-------PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTC-------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3468999999998853222 35678999999999999888765555554
No 126
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.17 E-value=33 Score=20.91 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 90 LRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 90 l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
|.+....|...+..|..-..-|..|+++|+..+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4444455666667777777888888888888764
No 127
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=55.12 E-value=37 Score=23.73 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
...+++.+..+|.-.+.-. .-.++|..||+++..|+....+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~-------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF-------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC-------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 5679999999998765333 2367899999999999988875554444
No 128
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.01 E-value=19 Score=22.82 Aligned_cols=51 Identities=6% Similarity=0.122 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|...|... .+ ....-.++|..+|+++..|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888889998888321 00 01134678999999999999887655555443
No 129
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.47 E-value=47 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=20.1
Q ss_pred HhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 92 ANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 92 ~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.++..|....+.++.|+..|+.++..|+++..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777666543
No 130
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=52.24 E-value=17 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQ 121 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~ 121 (195)
....+.+....+.+..|+..|..++..|+..
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556666677777777777777777654
No 131
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=51.99 E-value=14 Score=23.81 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 29 FSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 29 ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+++.+..+|.-++. . + ...++|..+|++...|+....+-+.+.+.
T Consensus 17 L~~~e~~vl~l~~~-g--~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA-G--L----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT-T--C----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc-C--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 67778888877432 2 1 23578999999999999888766655554
No 132
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=51.67 E-value=33 Score=22.21 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhccc
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGKS 125 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~ 125 (195)
+.....|++.+..|.+....|+...-....|+.+|+.+|..-
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445667888888888888888888888888899999888653
No 133
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.23 E-value=45 Score=21.28 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHh
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQL 122 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l 122 (195)
+...+.|......+..+|..|..++..|+..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444
No 134
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=49.42 E-value=25 Score=26.19 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 29 FSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 29 ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+++.+..+|.-.|-.. . .-.++|..+|+++..|+.+...-|.+-|+
T Consensus 141 L~~~~r~vl~l~~~~g---~---s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG---L---SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC---C---CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC---C---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4555556665554333 1 24578999999999999988766655554
No 135
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.31 E-value=84 Score=23.58 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 82 QIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 82 q~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
....+...++.+...+....+.+.+++..|+.++..|+..+.
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555443
No 136
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.96 E-value=38 Score=23.10 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHH
Q 029338 24 KNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (195)
Q Consensus 24 r~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak 77 (195)
.....+|+.+..+|.-.+.-. ...++|..||++...|+....+=+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~-------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF-------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345679999999998877322 35678999999999999877654433
No 137
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.24 E-value=41 Score=24.27 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=26.3
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhccc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLGKS 125 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~ 125 (195)
...|..|+.+.++|..|+..|..++..|...|...
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777888888888888888888777653
No 138
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=47.15 E-value=28 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.+++.+..+|.-.|-.. ....++|..+|++...|+.....-|.+-|+
T Consensus 187 ~L~~~~r~vl~l~~~~g------~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE------LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC------CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46677777777766443 134578999999999999888766655554
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=46.93 E-value=26 Score=24.77 Aligned_cols=42 Identities=7% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhh
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNR 74 (195)
..++.++...+...+... . ...++|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 467888877776667544 1 24678999999999999999753
No 140
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.60 E-value=35 Score=23.03 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=24.1
Q ss_pred HhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhccc
Q 029338 92 ANYDSLASGFESLIKEKESLLLELQMLNEQLGKS 125 (195)
Q Consensus 92 ~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~ 125 (195)
.+...|......+..++..|..++..|+..|...
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666777778888888888888877654
No 141
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.13 E-value=54 Score=22.86 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 029338 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQ 121 (195)
Q Consensus 83 ~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~ 121 (195)
.-.++..|....+.|..++..++++++.|+.-+..++.+
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667788888888888888888888888777776654
No 142
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.26 E-value=58 Score=20.83 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcccc
Q 029338 90 LRANYDSLASGFESLIKEKESLLLELQMLNEQLGKSD 126 (195)
Q Consensus 90 l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~~ 126 (195)
-+.....|......|..+|..|..++..|+..+..-.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888888887776543
No 143
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.66 E-value=20 Score=24.13 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
-..+++.+..+|.-++.-. ...++|..+|++...|+....+-+.+.+.
T Consensus 27 l~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGY-------SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTC-------CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3468899999988754322 23468999999999999988766665554
No 144
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=44.31 E-value=23 Score=24.11 Aligned_cols=37 Identities=30% Similarity=0.645 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHH
Q 029338 34 IRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (195)
Q Consensus 34 ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~ 85 (195)
+.++.-.|+.+ +||+++-- +|- -.|||.+|+..|...
T Consensus 18 vRiIkiLyQSN-P~P~p~GT-----------rqa---RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSN-PPPNPEGT-----------RQA---RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTC-CCCCCCSC-----------HHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCCCc-----------hHH---HHHHHHHHHHHHHHH
Confidence 45566678888 99976421 111 158999999866544
No 145
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=44.06 E-value=58 Score=20.52 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 90 LRANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 90 l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
++.....|...|..|......-..++..|++.|.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555543
No 146
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.63 E-value=39 Score=28.27 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=16.3
Q ss_pred HHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 90 LRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 90 l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
+..+.+.|...++.|..+...++.|+.+|+..+.+
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555544433
No 147
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.37 E-value=64 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcccc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLGKSD 126 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~~ 126 (195)
+.....+......|..||..|..++..|...+....
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777888888888888888887776543
No 148
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.20 E-value=65 Score=25.62 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHh
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQL 122 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l 122 (195)
-..+..|.+++..+.++|++|+.|-.+...++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666666666655555544
No 149
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=41.93 E-value=18 Score=28.75 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCCCCCCHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHH
Q 029338 24 KNKRRFSDEQI-RLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (195)
Q Consensus 24 r~R~~ft~eQ~-~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~ 78 (195)
..+...+.+++ ..-...|... . +.......||..+|++..-|-..|.||-.-.
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~-G-~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAG-D-AETFSVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSS-S-CCCCCHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhc-C-cccCCHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 34455666553 3344445554 3 3344567789999999999999999975443
No 150
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.87 E-value=20 Score=29.70 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=23.1
Q ss_pred HHHhhHHHhhhhHhHHH---HHHHHHHHHHHHHHHhcccc
Q 029338 90 LRANYDSLASGFESLIK---EKESLLLELQMLNEQLGKSD 126 (195)
Q Consensus 90 l~~~~~~L~~~~~~l~~---e~~~L~~e~~~l~~~l~~~~ 126 (195)
+..+++.|+.++..|+. +...|..|+++|+.+|.-..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 44555555555554443 55677788999999887654
No 151
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=41.55 E-value=22 Score=26.33 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHHHHhHHH
Q 029338 34 IRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHD 86 (195)
Q Consensus 34 ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Krkq~~~e 86 (195)
+.++.-.|+.+ +||.++-- +|- -.|||.||+.+|..-.
T Consensus 15 vRiIkiLyQSN-PyP~peGT-----------Rqa---RRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 15 VRLIKFLYQSN-PPPNPEGT-----------RQA---RRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHHSS-CCCCCCCC-----------TTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCCCc-----------hhh---hHhHHHHHHHHHHHHH
Confidence 44556668888 99976411 111 1699999998765543
No 152
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.35 E-value=65 Score=20.29 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHH
Q 029338 82 QIEHDYAQLRANYDSLASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 82 q~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l 118 (195)
........+...+..|.........+-..|..++.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777777777777777777777777766
No 153
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.57 E-value=26 Score=21.04 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 31 DEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 31 ~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
+++...+...+... + ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g--~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG--Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT--C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHH
Confidence 56666555555433 2 355789999999999999874
No 154
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.28 E-value=86 Score=22.62 Aligned_cols=19 Identities=26% Similarity=0.064 Sum_probs=8.4
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 029338 101 FESLIKEKESLLLELQMLN 119 (195)
Q Consensus 101 ~~~l~~e~~~L~~e~~~l~ 119 (195)
...|..+.++|..||+.|.
T Consensus 67 v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 155
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.48 E-value=93 Score=21.52 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHh
Q 029338 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQL 122 (195)
Q Consensus 83 ~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l 122 (195)
.+..+..+.++...+....+.+..++..|..+-..-+..+
T Consensus 32 LKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 32 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444446666666666665544444
No 156
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=39.17 E-value=36 Score=21.83 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhH
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..++++.+..+....... ..+||..+|++...|..|=..++
T Consensus 9 ~~~~g~~lr~~R~~~glt--------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT--------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC--------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC--------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 468888888887655444 56789999999999999988765
No 157
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=38.88 E-value=27 Score=22.98 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 27 RRFSDEQIRLLESIFESE----STKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~----~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
..++.+++..|...|..- ..+.+..+...+...+|++..+|...|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 457888899999988653 2467888888888899988888877774
No 158
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.95 E-value=51 Score=19.42 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=15.2
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 93 NYDSLASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 93 ~~~~L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
+++.|..+.+.-..|-.+|+.++..|.+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3444544444444566666666666653
No 159
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.65 E-value=67 Score=23.10 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=22.6
Q ss_pred HHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHH
Q 029338 86 DYAQLRANYDSLASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 86 e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l 118 (195)
++..++...+.|..+++.|.+++..|..++.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777777776553
No 160
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.56 E-value=23 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998765
No 161
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=37.24 E-value=1.2e+02 Score=22.11 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhh
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNR 74 (195)
..+.|+.+++..|.. ....+.+|++...|+.++...
T Consensus 35 g~R~Y~~~dl~~l~~--------------I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 35 GYRTYTQQHLNELTL--------------LRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp SCEECCHHHHHHHHH--------------HHHHHHTTCCHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH--------------HHHHHHCCCCHHHHHHHHHhh
Confidence 355788888887732 223477888888888888643
No 162
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.04 E-value=59 Score=22.17 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
..++.++...+-..+... + + ..++|..+|++...|..|+..
T Consensus 16 ~~~s~~~r~~i~~~~~~g--~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG--I-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT--C-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC--C-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 357887776666666533 2 2 456899999999999999864
No 163
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.74 E-value=40 Score=28.18 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 80 SKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 80 rkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
-+....+...+...+..|......++.|...|+.|+++|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777889999999999999999999999999999875
No 164
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.52 E-value=20 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999997654
No 165
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=36.48 E-value=20 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46799999999999999997754
No 166
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=36.32 E-value=41 Score=24.00 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHH
Q 029338 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRA 76 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRa 76 (195)
.++++.+..|....... ..+||..+|++...|..|-..++.
T Consensus 70 ~~~~~~l~~~R~~~gls--------q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT--------QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHHHTTCC--------HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 45666666665544333 457899999999999999887653
No 167
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=36.26 E-value=55 Score=24.10 Aligned_cols=51 Identities=12% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHH-HHh--CCChhHHHHHHHhh
Q 029338 23 MKNKRRFSDEQIRLLESIF-ESESTKLEPRKKMQVA-TEL--GLQPRQVAIWFQNK 74 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F-~~~~~~ps~~~r~~LA-~~L--gLt~rQVkvWFQNR 74 (195)
++.|.++|.+|...+-..+ ..+ +..+..+....| ..+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4568899999999999998 566 656554443322 277 77888898888664
No 168
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=35.89 E-value=40 Score=18.16 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=11.7
Q ss_pred HhhhhHhHHHHHHHHHHHHHHH
Q 029338 97 LASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 97 L~~~~~~l~~e~~~L~~e~~~l 118 (195)
|+.+...|+-|...|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444555555555665555543
No 169
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.72 E-value=1.1e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 83 ~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
+..+....+..+-.+..........|..|..++.+|+..|..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555556667778888888888777655
No 170
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=34.79 E-value=1.1e+02 Score=21.17 Aligned_cols=43 Identities=28% Similarity=0.501 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 82 QIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 82 q~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
|.+.+|-..-.+|..|....+.|..|+..|...+.+|=.++.-
T Consensus 30 qlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~ 72 (97)
T 1no4_A 30 QLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhcc
Confidence 4566777788888888888888888888888888887666543
No 171
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.78 E-value=52 Score=23.76 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
..++.++...+-..+... . ...++|..+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--V----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777666666433 2 2456899999999999999864
No 172
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.60 E-value=40 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=21.5
Q ss_pred HHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 54 MQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 54 ~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
.++|..+|+++..|+....+=+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 478999999999999988765555544
No 173
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.53 E-value=89 Score=21.14 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=21.1
Q ss_pred HhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 92 ANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 92 ~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.+...|......+..+++.|..++..|+..|.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666667777777777777776664
No 174
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.87 E-value=94 Score=19.93 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
+.....|......|..+|..|..++..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666655543
No 175
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.07 E-value=57 Score=22.51 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 96 SLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 96 ~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
.|......+..++..|..+++.|...|.
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555444
No 176
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.03 E-value=25 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997754
No 177
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=32.99 E-value=14 Score=27.02 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCChhHHHHHHHhhHHHH-------HHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 61 GLQPRQVAIWFQNKRARW-------KSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 61 gLt~rQVkvWFQNRRak~-------Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
||++.+|...=+-||.-. -++....+...|..+...|..+.+.|..|+..|..|+..++.
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777666554443211 122233344445555555555555555555555555544443
No 178
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=32.81 E-value=69 Score=25.16 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
...+|+.+..+|.-.++-. .-.++|..||++++.|+....|-+.|-.-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~-------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK-------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC-------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3468999999987754322 24678999999999999988766655543
No 179
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.72 E-value=68 Score=17.99 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=9.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHH
Q 029338 99 SGFESLIKEKESLLLELQMLN 119 (195)
Q Consensus 99 ~~~~~l~~e~~~L~~e~~~l~ 119 (195)
.+...|++|...|+-|+.-|+
T Consensus 9 qeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554444
No 180
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=32.50 E-value=24 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhhHH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKRA 76 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRRa 76 (195)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987654
No 181
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.38 E-value=80 Score=20.84 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 28 RFSDEQIRLLESIFESE----STKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~----~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
.++.++...+...|..- ..+.+..+...+...+|++...|...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46888999999998753 2467788888888888988877766654
No 182
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.22 E-value=66 Score=23.59 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHh
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQN 73 (195)
..++.++...+-..+... . ...++|..+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~-----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V-----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C-----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777666666544 1 2456899999999999999864
No 183
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.05 E-value=1.6e+02 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhh
Q 029338 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (195)
Q Consensus 25 ~R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNR 74 (195)
..+.|+.+++..|.. ....+.+|++-..|+..+...
T Consensus 51 g~R~Y~~~dl~~l~~--------------I~~lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 51 GDRIFNEEALKYLEM--------------ILCLKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp CCEEBCHHHHHHHHH--------------HHHHHTTTCCHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHH--------------HHHHHHcCCCHHHHHHHHHhh
Confidence 456788888777732 223467888888888888754
No 184
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.76 E-value=1.3e+02 Score=20.94 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=10.0
Q ss_pred HHHHHhhHHHhhhhHhHHHHHHHH
Q 029338 88 AQLRANYDSLASGFESLIKEKESL 111 (195)
Q Consensus 88 ~~l~~~~~~L~~~~~~l~~e~~~L 111 (195)
..|....+.+..+...+++++..|
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 185
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.76 E-value=1.6e+02 Score=22.93 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=9.3
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 029338 102 ESLIKEKESLLLELQMLN 119 (195)
Q Consensus 102 ~~l~~e~~~L~~e~~~l~ 119 (195)
..+.+|...|+.++...+
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555444
No 186
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.53 E-value=29 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.354 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 187
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.52 E-value=1e+02 Score=19.36 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHhhhhHhHHHHHHHHHHHH
Q 029338 86 DYAQLRANYDSLASGFESLIKEKESLLLEL 115 (195)
Q Consensus 86 e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~ 115 (195)
....|......|..++..|..+...|..++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777777777777776543
No 188
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=30.20 E-value=85 Score=24.57 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~K 79 (195)
...+|+.+..+|.-.+.-. .-.++|..||+++..|+.-..|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~-------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK-------TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC-------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4568999999987654222 3467899999999999988876555544
No 189
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=30.18 E-value=1.2e+02 Score=20.60 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCC--ChhHHHHHHH
Q 029338 26 KRRFSDEQIRLLESIFESE----STKLEPRKKMQVATELGL--QPRQVAIWFQ 72 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~----~~~ps~~~r~~LA~~LgL--t~rQVkvWFQ 72 (195)
...++.+++..|...|..- +.+.+..+...+...+|. +..+|...|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4568999999999998654 457899999998888884 6677777764
No 190
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=30.05 E-value=41 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhHHHHHHHh
Q 029338 53 KMQVATELGLQPRQVAIWFQN 73 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQN 73 (195)
..+||+.||+++.-|-.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 567999999999999999865
No 191
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.92 E-value=30 Score=21.75 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999997654
No 192
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.78 E-value=53 Score=22.11 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=18.9
Q ss_pred HHHHHhhHHHhhhhHhHHHHHHHHHHHHHHH
Q 029338 88 AQLRANYDSLASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 88 ~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l 118 (195)
..|......|..+.+.|+.++..|..++..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666667777776666544
No 193
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.03 E-value=31 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhHHHHHHHhhHH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKRA 76 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRRa 76 (195)
..+||..+|+++..|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999877654
No 194
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.89 E-value=68 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 27 ~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
..+++.+..+|.-.++-- .-.++|..||+++..|++...+-|.+-+.
T Consensus 196 ~~L~~~erevl~L~~~G~-------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL-------SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 468999999988865322 35678999999999999988776666654
No 195
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.74 E-value=32 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997753
No 196
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.30 E-value=1.3e+02 Score=21.76 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCChh
Q 029338 26 KRRFSDEQIRLLESIFESE----STKLEPRKKMQVATELGLQPR 65 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~----~~~ps~~~r~~LA~~LgLt~r 65 (195)
+..+|.+|+..|...|..- +.+.+..+...+.+.||..+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4679999999999999752 357899999998999997653
No 197
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.16 E-value=46 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|...++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45789999999999999987643
No 198
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.05 E-value=1.4e+02 Score=24.15 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 029338 84 EHDYAQLRANYDSLASGFESLIKEKESLLLELQMLN 119 (195)
Q Consensus 84 ~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~ 119 (195)
-.++..|....+.|..+...|++++..|+.-+..++
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665555444443
No 199
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.82 E-value=1e+02 Score=20.78 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHHhhHHHhhhhHhHHHHHHHHHHHHHHH
Q 029338 88 AQLRANYDSLASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 88 ~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l 118 (195)
..|......+..+.+.|+.++..|..++.+|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445555556666666666777776666543
No 200
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.57 E-value=16 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=19.4
Q ss_pred HHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 55 QVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 55 ~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
++|..+|+++..|+.+...-|.+.|+
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45677789999999888766665554
No 201
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=27.19 E-value=36 Score=21.10 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 202
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.17 E-value=1.3e+02 Score=21.65 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
......|..+.+.|..||+.|+.+++.-+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566777788888888888888876654
No 203
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.01 E-value=1.1e+02 Score=20.99 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=13.6
Q ss_pred HHHHHHHhhHHHhhhhHhHHHHHHHHHHHH
Q 029338 86 DYAQLRANYDSLASGFESLIKEKESLLLEL 115 (195)
Q Consensus 86 e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~ 115 (195)
++..|....+.+..+...|+.||..|..-+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555544444333
No 204
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.86 E-value=1.3e+02 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcccc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLGKSD 126 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~~ 126 (195)
-.++..|....+.+..|...|+.++..|+.......
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888888888776654
No 205
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.80 E-value=1e+02 Score=24.47 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 87 YAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 87 ~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.+..+..++-+...+..|+.++.+|..++++|+.....
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888899999999999998876543
No 206
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.64 E-value=1.5e+02 Score=21.09 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcccc
Q 029338 86 DYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGKSD 126 (195)
Q Consensus 86 e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~~ 126 (195)
.....+..|.+=++..+.+..+++.|..++..|+..+.+..
T Consensus 48 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 48 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555666777777777777776665543
No 207
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=26.27 E-value=36 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 208
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.83 E-value=37 Score=21.86 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhhHH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKRA 76 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRRa 76 (195)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999977653
No 209
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=25.67 E-value=24 Score=27.26 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHH
Q 029338 23 MKNKRRFSDEQI-RLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (195)
Q Consensus 23 rr~R~~ft~eQ~-~~Le~~F~~~~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~ 78 (195)
.+.|...+.+++ ......|... .| .......||..+|++..-|-..|.||-.-.
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~-G~-~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEV-GL-DGVSTRRLAKRLGVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHH-CG-GGCCHHHHHHHHTSCTHHHHTTCSSHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhc-Cc-ccCCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 344555666553 3444556555 43 333567889999999999999998865544
No 210
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=25.62 E-value=96 Score=17.99 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=5.6
Q ss_pred HhHHHHHHHHHHHH
Q 029338 102 ESLIKEKESLLLEL 115 (195)
Q Consensus 102 ~~l~~e~~~L~~e~ 115 (195)
+.++.+|..|..++
T Consensus 17 ddlkrQN~~Le~Qi 30 (34)
T 1a93_B 17 DDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 211
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.52 E-value=1.5e+02 Score=20.59 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=22.3
Q ss_pred HHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhc
Q 029338 91 RANYDSLASGFESLIKEKESLLLELQMLNEQLG 123 (195)
Q Consensus 91 ~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~ 123 (195)
-.++..|....+.+..|...|+.++..|+....
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777776543
No 212
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.19 E-value=45 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 213
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.07 E-value=39 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.639 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|...++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999987653
No 214
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.95 E-value=2.2e+02 Score=24.77 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 83 ~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
.+.+....++..+....+.+.+++|+.+|+.++..+...+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 334444455555666666666666777777666666555543
No 215
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.20 E-value=1.6e+02 Score=23.71 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 82 QIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 82 q~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
|.+.++-..-.+|..|....+.+..|+..|..-+.+|.+
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 456666666777777777666666666666655555543
No 216
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=24.02 E-value=49 Score=21.88 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|+++..|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 217
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=23.10 E-value=47 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999997754
No 218
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.84 E-value=1.4e+02 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=13.6
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHH
Q 029338 97 LASGFESLIKEKESLLLELQMLNE 120 (195)
Q Consensus 97 L~~~~~~l~~e~~~L~~e~~~l~~ 120 (195)
.......++.+|.+|+.||++|..
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666666654
No 219
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.82 E-value=1.2e+02 Score=20.76 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 029338 88 AQLRANYDSLASGFESLIKEKESLLLELQMLN 119 (195)
Q Consensus 88 ~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~ 119 (195)
..|......+..+.+.++.++..|..+++.|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666667778888888888888775
No 220
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.72 E-value=2e+02 Score=19.97 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=13.6
Q ss_pred HhhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 029338 92 ANYDSLASGFESLIKEKESLLLELQMLNEQ 121 (195)
Q Consensus 92 ~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~ 121 (195)
.+...|+.....+..++..|..++..|.+.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 221
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.59 E-value=2.3e+02 Score=20.66 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=22.8
Q ss_pred HHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 89 QLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 89 ~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
..+..|.+=.+..+.+..+++.|..++..|+..+..
T Consensus 73 IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 73 IYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334444444444556777888888888888776653
No 222
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=22.58 E-value=1.7e+02 Score=19.16 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCChhHHHHHHHhhHHHHHH
Q 029338 23 MKNKRRFSDEQIRLLESIFESE-STKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (195)
Q Consensus 23 rr~R~~ft~eQ~~~Le~~F~~~-~~~ps~~~r~~LA~~LgLt~rQVkvWFQNRRak~Kr 80 (195)
+++|-+.|++--...-.....- -....+..+.++...-||+..+|+.=.|.-|..-+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4567788887655444443333 134557777777777799999999999988877665
No 223
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.42 E-value=1.2e+02 Score=20.11 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCChhHHHHHHH
Q 029338 28 RFSDEQIRLLESIFESE----STKLEPRKKMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 28 ~ft~eQ~~~Le~~F~~~----~~~ps~~~r~~LA~~LgLt~rQVkvWFQ 72 (195)
.++.++...+...|..- ..+.+..+...+...+|++...|...|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36778888888888653 2467888888888888988877776664
No 224
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.26 E-value=2.2e+02 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=10.0
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHH
Q 029338 93 NYDSLASGFESLIKEKESLLLELQML 118 (195)
Q Consensus 93 ~~~~L~~~~~~l~~e~~~L~~e~~~l 118 (195)
+.+.+....+..++....|..|++.+
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33334333333333333344443333
No 225
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.16 E-value=2.3e+02 Score=20.49 Aligned_cols=47 Identities=0% Similarity=-0.118 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh-------CCChhHHHHHHHh
Q 029338 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATEL-------GLQPRQVAIWFQN 73 (195)
Q Consensus 26 R~~ft~eQ~~~Le~~F~~~~~~ps~~~r~~LA~~L-------gLt~rQVkvWFQN 73 (195)
+..++.++...+...+..+ +..+..+........ .++...|..|+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~-~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN-PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC-SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC-ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 3457777778887777777 666665544322222 3678889888864
No 226
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=21.72 E-value=51 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999997764
No 227
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.61 E-value=1.1e+02 Score=16.83 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 029338 102 ESLIKEKESLLLELQMLNEQ 121 (195)
Q Consensus 102 ~~l~~e~~~L~~e~~~l~~~ 121 (195)
.++..|+..|++.+..|-..
T Consensus 9 asleaenkqlkakveellak 28 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665443
No 228
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.19 E-value=60 Score=26.76 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 029338 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGK 124 (195)
Q Consensus 83 ~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~ 124 (195)
....+..+-..++.+..+...+..|+..+..++++|+..+..
T Consensus 139 ~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556666667777777777777777777777777666544
No 229
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.11 E-value=50 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999987654
No 230
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=20.68 E-value=57 Score=17.86 Aligned_cols=13 Identities=38% Similarity=0.946 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHhH
Q 029338 72 QNKRARWKSKQIE 84 (195)
Q Consensus 72 QNRRak~Krkq~~ 84 (195)
.|||.+|+..+..
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5889999876544
No 231
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.41 E-value=52 Score=21.72 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 029338 53 KMQVATELGLQPRQVAIWFQ 72 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQ 72 (195)
..++|+.+|++++.|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999965
No 232
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.25 E-value=2.7e+02 Score=20.58 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHhhHHHhhhhHhHHHHHHHHHHHHHHHHHHhccc
Q 029338 77 RWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQMLNEQLGKS 125 (195)
Q Consensus 77 k~Krkq~~~e~~~l~~~~~~L~~~~~~l~~e~~~L~~e~~~l~~~l~~~ 125 (195)
...+.+.......|..++..|.......-.|.++|+.+++.|...+...
T Consensus 63 ~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 63 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
No 233
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=20.02 E-value=57 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhHHHHHHHhhH
Q 029338 53 KMQVATELGLQPRQVAIWFQNKR 75 (195)
Q Consensus 53 r~~LA~~LgLt~rQVkvWFQNRR 75 (195)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
Done!