BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029339
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
GN=At3g50808 PE=4 SV=1
Length = 110
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 68 MDISGVQTYVINSARVVFLNER---PQPRSGKGVAHICEICGRSL--LDPFRFCSLGCKL 122
MDISG+ Y IN +V++N+R RS V H C+IC + FCS+ CK
Sbjct: 5 MDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKF 64
Query: 123 AGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSAR 182
+ L + + ME ++ E+ E +I P K
Sbjct: 65 RSV---------LGSQLDELMENSSEVT---------EISE----EIDEPVMKK----RH 98
Query: 183 RRKGVPHRAPF 193
RRKG PHRAPF
Sbjct: 99 RRKGSPHRAPF 109
>sp|Q9Z0S8|B3A2_CAVPO Anion exchange protein 2 OS=Cavia porcellus GN=SLC4A2 PE=2 SV=1
Length = 1238
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Query: 143 MERKEGISRQVSSRKQEEL------------REDSQHDIYPPTTHKPPSSARRRK 185
+ER E I ++ SR EEL R+ S H +P +TH PP ARRRK
Sbjct: 44 VERFEEILQEAGSRGGEELGRSYGEEDFEYHRQSSHHIHHPLSTHLPPD-ARRRK 97
>sp|Q2SQL8|THIC_HAHCH Phosphomethylpyrimidine synthase OS=Hahella chejuensis (strain KCTC
2396) GN=thiC PE=3 SV=1
Length = 638
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 92 PRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISR 151
P+ G +AH C +CG +FCS+ K+ RD +A K EA + EG S+
Sbjct: 568 PKEGHKLAHFCSMCGP------KFCSM--KITQDVRDYSA------KLEAEKAQAEGASQ 613
Query: 152 QVSSRKQEELRE 163
Q + + +E+ +
Sbjct: 614 QEAEQGMQEMSQ 625
>sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=imp1 PE=1 SV=1
Length = 539
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 37 CRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVI 78
C D+++IQ+ + ++++VGE+ MD+ + Y +
Sbjct: 425 CDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAV 466
>sp|Q03096|EST3_YEAST Telomere replication protein EST3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EST3 PE=1 SV=2
Length = 181
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 LREDSQHDIYPPTTHKPPSSARRRKGVPHRAP 192
+ ++S+HD Y P+ H PS ++ +PH +P
Sbjct: 26 IEDNSEHDQYHPSGHVIPSLTKQDLALPHMSP 57
>sp|A8AKS9|THIC_CITK8 Phosphomethylpyrimidine synthase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRAKGGEIYLRKEE 630
>sp|B7NFT5|THIC_ECOLU Phosphomethylpyrimidine synthase OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|Q32AG7|THIC_SHIDS Phosphomethylpyrimidine synthase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARTYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|Q0TA71|THIC_ECOL5 Phosphomethylpyrimidine synthase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|Q8FB77|THIC_ECOL6 Phosphomethylpyrimidine synthase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=thiC PE=3 SV=2
Length = 631
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|A1AIG5|THIC_ECOK1 Phosphomethylpyrimidine synthase OS=Escherichia coli O1:K1 / APEC
GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|B7MIY0|THIC_ECO45 Phosphomethylpyrimidine synthase OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|B7UPE9|THIC_ECO27 Phosphomethylpyrimidine synthase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|B1LNU6|THIC_ECOSM Phosphomethylpyrimidine synthase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|B7LUK8|THIC_ESCF3 Phosphomethylpyrimidine synthase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
>sp|Q3YUZ0|THIC_SHISS Phosphomethylpyrimidine synthase OS=Shigella sonnei (strain Ss046)
GN=thiC PE=3 SV=1
Length = 631
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 80 SARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKN 139
+AR PQ SGK VAH C +CG +FCS+ K++ RD A+ T+E+
Sbjct: 561 TARAYHDETLPQ-ESGK-VAHFCSMCGP------KFCSM--KISQEVRDYAAAQTIEVGM 610
Query: 140 EAFMERKEGISRQVSSRKQE 159
E ++ RK+E
Sbjct: 611 ADMSENFRARGGEIYLRKEE 630
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,483,309
Number of Sequences: 539616
Number of extensions: 2798529
Number of successful extensions: 10347
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 10341
Number of HSP's gapped (non-prelim): 22
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)