Query 029339
Match_columns 195
No_of_seqs 150 out of 194
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv3_A Hypothetical protein YA 96.1 0.00075 2.6E-08 48.4 -0.5 42 98-139 8-54 (68)
2 1fre_A Nuclear factor XNF7; zi 95.8 0.0056 1.9E-07 38.0 2.7 36 9-49 5-41 (42)
3 2yvr_A Transcription intermedi 95.8 0.0019 6.4E-08 41.6 0.4 38 9-50 8-45 (50)
4 2d8u_A Ubiquitin ligase TRIM63 95.6 0.0036 1.2E-07 41.9 1.2 38 8-49 9-47 (64)
5 3ddt_A E3 ubiquitin-protein li 95.5 0.0036 1.2E-07 40.1 0.9 40 7-50 6-46 (48)
6 2did_A Tripartite motif protei 95.2 0.0066 2.3E-07 39.5 1.5 37 9-50 10-47 (53)
7 2yrg_A Tripartite motif-contai 94.2 0.017 5.9E-07 38.8 1.5 37 9-50 16-53 (59)
8 2csv_A Tripartite motif protei 94.1 0.011 3.9E-07 40.7 0.6 37 9-50 20-56 (72)
9 2dja_A Midline-2; tripartite m 93.5 0.014 4.9E-07 40.9 0.1 39 9-51 20-59 (84)
10 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.027 9.4E-07 40.4 -0.0 37 9-49 61-98 (101)
11 2egm_A Tripartite motif-contai 91.9 0.011 3.6E-07 39.6 -2.2 36 9-49 20-56 (57)
12 2w0t_A Lethal(3)malignant brai 88.7 0.1 3.6E-06 34.3 0.5 25 97-121 4-34 (43)
13 2das_A Zinc finger MYM-type pr 85.1 0.56 1.9E-05 32.9 2.6 30 92-121 13-52 (62)
14 2l8e_A Polyhomeotic-like prote 72.7 0.56 1.9E-05 31.2 -0.6 24 99-122 18-46 (49)
15 3nis_A E3 ubiquitin-protein li 63.9 3.6 0.00012 29.8 2.2 32 17-48 16-51 (82)
16 2hiy_A Hypothetical protein; C 52.6 5.1 0.00017 32.4 1.5 32 57-89 20-54 (183)
17 2yqp_A Probable ATP-dependent 49.4 7.5 0.00026 27.0 1.7 27 99-125 19-50 (60)
18 3ny3_A E3 ubiquitin-protein li 47.7 9.9 0.00034 27.0 2.1 32 17-48 12-47 (75)
19 2jun_A Midline-1; B-BOX, TRIM, 41.5 6.2 0.00021 27.8 0.2 34 9-44 5-39 (101)
20 3iz6_X 40S ribosomal protein S 30.2 33 0.0011 25.3 2.6 50 40-112 19-68 (86)
21 3u5c_b RP61, YS20, 40S ribosom 27.7 23 0.00078 25.9 1.4 50 40-112 17-66 (82)
22 2yqq_A Zinc finger HIT domain- 25.4 37 0.0013 22.9 2.0 22 99-121 12-39 (56)
23 2dip_A Zinc finger SWIM domain 25.0 12 0.00042 27.6 -0.5 30 23-52 47-77 (98)
24 2fc7_A ZZZ3 protein; structure 22.2 42 0.0014 23.8 1.9 31 23-53 37-76 (82)
No 1
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=96.10 E-value=0.00075 Score=48.36 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=34.4
Q ss_pred CCccccccccccC----CCC-eeecccceecccccCCCcccccccch
Q 029339 98 VAHICEICGRSLL----DPF-RFCSLGCKLAGIKRDGNASFTLEIKN 139 (195)
Q Consensus 98 ~~~~C~~C~R~L~----d~~-rFCSl~CKv~~~~~~~~~~~~l~~~~ 139 (195)
....|.+|++... .+| .|||-+||..++.++.+-.+.|....
T Consensus 8 ~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~Wa~e~y~Ip~~~ 54 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSG 54 (68)
T ss_dssp CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSS
T ss_pred CcCcCCCCCCcccccccCCCCcccCHHHHhhhHHHHhcCCccccCCC
Confidence 3568999999985 355 59999999999999998888886543
No 2
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=95.82 E-value=0.0056 Score=37.97 Aligned_cols=36 Identities=31% Similarity=0.742 Sum_probs=28.8
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 49 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 49 (195)
.|+.|.. .-.+||.+|.. .+|..|.. ..|++|+++-
T Consensus 5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 5888852 47799999985 89999965 6899998763
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.80 E-value=0.0019 Score=41.63 Aligned_cols=38 Identities=29% Similarity=0.668 Sum_probs=30.1
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 50 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI 50 (195)
.|+.|.+ ..-++||.+|.. .+|..|....|++|+++-|
T Consensus 8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 5888854 247799999985 8999997678999987643
No 4
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.57 E-value=0.0036 Score=41.93 Aligned_cols=38 Identities=34% Similarity=0.832 Sum_probs=29.5
Q ss_pred ccccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339 8 TVCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 49 (195)
Q Consensus 8 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 49 (195)
..|+.|.+ ..-++||.+|.. .+|..|.. ..|++|+++-
T Consensus 9 ~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 9 PMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEEC
T ss_pred CcCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeC
Confidence 35888854 247799999985 89999953 5899997664
No 5
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.49 E-value=0.0036 Score=40.10 Aligned_cols=40 Identities=33% Similarity=0.798 Sum_probs=30.9
Q ss_pred cccccccCCCCCCCCceecccCCCCcCCcccC-CCCCCCCceeEE
Q 029339 7 FTVCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQI 50 (195)
Q Consensus 7 F~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI 50 (195)
...|+.|.+ .+-++||.+|.. .+|..|. ...|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence 356888873 236799999984 8999994 468999988754
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=95.24 E-value=0.0066 Score=39.54 Aligned_cols=37 Identities=24% Similarity=0.781 Sum_probs=29.8
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI 50 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 50 (195)
.|+.|. ....+||.+|.. .+|..|.. ..|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 588885 247799999985 89999964 78999987754
No 7
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.017 Score=38.77 Aligned_cols=37 Identities=22% Similarity=0.760 Sum_probs=30.1
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI 50 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 50 (195)
.|+.|.. ...+||.+|.. .+|..|.. ..|++|+++-|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5888863 47799999985 89999954 78999988765
No 8
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.13 E-value=0.011 Score=40.67 Aligned_cols=37 Identities=24% Similarity=0.784 Sum_probs=29.6
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 50 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI 50 (195)
.|+.|. ..-++||.+|.. .+|..|....|++|+++-|
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence 688884 247799999985 8999996688999977643
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.48 E-value=0.014 Score=40.95 Aligned_cols=39 Identities=33% Similarity=0.853 Sum_probs=30.4
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEEE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQIR 51 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQIR 51 (195)
.|+.|.. ..-++||.+|.. .+|..|.. ..|++|+++-|-
T Consensus 20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHH
Confidence 5888853 137799999985 89999965 789999877553
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.09 E-value=0.027 Score=40.40 Aligned_cols=37 Identities=38% Similarity=0.899 Sum_probs=29.1
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 49 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 49 (195)
.|+.|.+ ...++||.+|.. .+|..|.. ..|++|+++-
T Consensus 61 ~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 61 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred cCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence 5888854 237799999985 89999964 7899998764
No 11
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.93 E-value=0.011 Score=39.63 Aligned_cols=36 Identities=31% Similarity=0.789 Sum_probs=28.4
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 49 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 49 (195)
.|..|. ....+||.+|.. .+|..|.. ..|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 488884 247799999984 89999954 6899998764
No 12
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=88.74 E-value=0.1 Score=34.25 Aligned_cols=25 Identities=36% Similarity=0.935 Sum_probs=18.4
Q ss_pred CCCcccccccc-ccCCC-----Ceeecccce
Q 029339 97 GVAHICEICGR-SLLDP-----FRFCSLGCK 121 (195)
Q Consensus 97 ~~~~~C~~C~R-~L~d~-----~rFCSl~CK 121 (195)
+....||.|++ ..... -||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 34568999998 44444 479999994
No 13
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=85.09 E-value=0.56 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=24.1
Q ss_pred CCCCCCCCccccccccccCC----------CCeeecccce
Q 029339 92 PRSGKGVAHICEICGRSLLD----------PFRFCSLGCK 121 (195)
Q Consensus 92 ~~~~~~~~~~C~~C~R~L~d----------~~rFCSl~CK 121 (195)
.++.+.....|+.|.+.|+. +-.|||..|-
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence 45667788999999999973 3459999995
No 14
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=72.69 E-value=0.56 Score=31.24 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=19.1
Q ss_pred CccccccccccCC-----CCeeeccccee
Q 029339 99 AHICEICGRSLLD-----PFRFCSLGCKL 122 (195)
Q Consensus 99 ~~~C~~C~R~L~d-----~~rFCSl~CKv 122 (195)
...|+.|++.+.. +-+|||.+|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3579999999964 25799999963
No 15
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=63.94 E-value=3.6 Score=29.81 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=24.1
Q ss_pred CCCCCceecccCCCC---cCCcccC-CCCCCCCcee
Q 029339 17 ARSECNMYCLDCNDQ---AFCFYCR-SSKHKDHQVI 48 (195)
Q Consensus 17 ~knE~N~FCldC~~~---~~C~~C~-~~~H~~Hrvl 48 (195)
.++|--..|.||... +||..|. ...|.+|++.
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 467888999999766 5777773 4579999664
No 16
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=52.63 E-value=5.1 Score=32.39 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=24.9
Q ss_pred ceeeechhhhh---hcccceeEEEECCceEEEecCC
Q 029339 57 DVVRVGEIQNI---MDISGVQTYVINSARVVFLNER 89 (195)
Q Consensus 57 dVVrv~diqkl---lDiS~IQtYvINsakVVFLn~R 89 (195)
+-|...|+..+ +-..+|+|| |||.-|||--..
T Consensus 20 nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 20 NKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 44666777765 678899999 999999997543
No 17
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.39 E-value=7.5 Score=27.01 Aligned_cols=27 Identities=41% Similarity=0.764 Sum_probs=20.4
Q ss_pred Ccccccccccc---CC--CCeeecccceeccc
Q 029339 99 AHICEICGRSL---LD--PFRFCSLGCKLAGI 125 (195)
Q Consensus 99 ~~~C~~C~R~L---~d--~~rFCSl~CKv~~~ 125 (195)
.+.|-+|+|-= -| .-+-|||.||-..+
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHH
Confidence 55699999864 23 47899999996554
No 18
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=47.68 E-value=9.9 Score=26.96 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCCCCceecccCCCC---cCCccc-CCCCCCCCcee
Q 029339 17 ARSECNMYCLDCNDQ---AFCFYC-RSSKHKDHQVI 48 (195)
Q Consensus 17 ~knE~N~FCldC~~~---~~C~~C-~~~~H~~Hrvl 48 (195)
.++|--..|.+|... +||..| ....|.+|++.
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 568888999999765 466666 35679999754
No 19
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=41.50 E-value=6.2 Score=27.78 Aligned_cols=34 Identities=18% Similarity=0.585 Sum_probs=23.5
Q ss_pred cccccCCCCCCCCceecccCCCCcCCcccCCCC-CCC
Q 029339 9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSK-HKD 44 (195)
Q Consensus 9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~-H~~ 44 (195)
.|+.=.+..+.+.-.+|++|.. .||..| +.. |..
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~-~~C~~C-l~~~h~~ 39 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEV-SYCDEC-LKATHPN 39 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTE-EECHHH-HHHHSCS
T ss_pred CCcCCCCCCCCCceEECCcCCh-HHhHHH-CHHHhcc
Confidence 3554443335677899999985 899999 543 763
No 20
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.18 E-value=33 Score=25.28 Aligned_cols=50 Identities=30% Similarity=0.474 Sum_probs=26.6
Q ss_pred CCCCCCceeEEEeecccceeeechhhhhhcccceeEEEECCceEEEecCCCCCCCCCCCCccccccccccCCC
Q 029339 40 SKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP 112 (195)
Q Consensus 40 ~~H~~HrvlQIRRssYhdVVrv~diqkllDiS~IQtYvINsakVVFLn~RPq~~~~~~~~~~C~~C~R~L~d~ 112 (195)
.-|+..+++|--+|-+.|| |.-||..||+ ||=+ +| ....|..|+..|..|
T Consensus 19 ~khK~k~Lv~~PnS~Fm~V-------kCp~C~~~~~--------VFSh--A~------t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 19 LKHKKKRLVQSPNSFFMDV-------KCQGCFNITT--------VFSH--SQ------TVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------------CEEEE-------ECTTTCCEEE--------EETT--CS------SCCCCSSSCCCCSCC
T ss_pred hhhhheeeccCCCCcEeEE-------ECCCCCCeeE--------EEec--CC------cEEEccCCCCEeecC
Confidence 3577889999888888887 5668998886 6654 33 255899999999765
No 21
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=27.67 E-value=23 Score=25.94 Aligned_cols=50 Identities=36% Similarity=0.488 Sum_probs=37.9
Q ss_pred CCCCCCceeEEEeecccceeeechhhhhhcccceeEEEECCceEEEecCCCCCCCCCCCCccccccccccCCC
Q 029339 40 SKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP 112 (195)
Q Consensus 40 ~~H~~HrvlQIRRssYhdVVrv~diqkllDiS~IQtYvINsakVVFLn~RPq~~~~~~~~~~C~~C~R~L~d~ 112 (195)
.-|+..+++|--+|-+.|| |.-||..||+ ||=+ +| ....|..|+..|..|
T Consensus 17 ~khK~k~Lv~~PnS~Fm~V-------kCp~C~~~q~--------VFSh--a~------t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 17 RKHKLKTLVQGPRSYFLDV-------KCPGCLNITT--------VFSH--AQ------TAVTCESCSTILCTP 66 (82)
T ss_dssp SSCTTTSSSCCCCCCEEEE-------ECTTSCSCEE--------EESB--CS------SCCCCSSSCCCCEEC
T ss_pred hhhhheeeccCCCCcEEEE-------ECCCCCCeeE--------EEec--CC------eEEEccccCCEEecc
Confidence 3588889999888877777 6788888886 6754 33 255899999999654
No 22
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.42 E-value=37 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=15.7
Q ss_pred CccccccccccCC------CCeeecccce
Q 029339 99 AHICEICGRSLLD------PFRFCSLGCK 121 (195)
Q Consensus 99 ~~~C~~C~R~L~d------~~rFCSl~CK 121 (195)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 457899988 321 2579999995
No 23
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.04 E-value=12 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=21.1
Q ss_pred eecccCCCCcCCcccC-CCCCCCCceeEEEe
Q 029339 23 MYCLDCNDQAFCFYCR-SSKHKDHQVIQIRR 52 (195)
Q Consensus 23 ~FCldC~~~~~C~~C~-~~~H~~HrvlQIRR 52 (195)
+-|+.|..--||..|. ...|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 4688887667899993 44577887776644
No 24
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.20 E-value=42 Score=23.84 Aligned_cols=31 Identities=42% Similarity=0.756 Sum_probs=21.7
Q ss_pred eecccCCC---CcCCcccCC-----CCC-CCCceeEEEee
Q 029339 23 MYCLDCND---QAFCFYCRS-----SKH-KDHQVIQIRRS 53 (195)
Q Consensus 23 ~FCldC~~---~~~C~~C~~-----~~H-~~HrvlQIRRs 53 (195)
+-|++|.. --||..|.. ..| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 56899976 569999942 245 67888777543
Done!