BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029340
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana
GN=At4g09580 PE=1 SV=1
Length = 287
Score = 279 bits (714), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 154/188 (81%), Gaps = 4/188 (2%)
Query: 1 MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
MAA RN+ G+R + +DEE +G D+SPT KR KSERFPL+ WEFA F
Sbjct: 1 MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60
Query: 57 VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y FI+GYCSTYI
Sbjct: 61 VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120
Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180
Query: 177 LRFFQAEV 184
LRFFQAE+
Sbjct: 181 LRFFQAEI 188
>sp|Q5U4K5|TM41B_XENLA Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1
Length = 278
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 19 EEESVNG----KVKEGDE--SPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTM 72
E S G + G+E +P A + SE V +FL + +F +Y
Sbjct: 4 HERSHTGGHTFQCNHGNEKKAPAAGKVHSEGGS-ARMSLLILVSIFLCAASVMFLVYKYF 62
Query: 73 PA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFM 129
P + K+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+
Sbjct: 63 PQLSEEELEKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFL 122
Query: 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
S+L+G L+ L LV + GAS C+ LS L+GRP+V + +K
Sbjct: 123 SILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDK 169
>sp|Q8MXN7|TM41_DICDI Transmembrane protein 41 homolog OS=Dictyostelium discoideum
GN=DDB_G0275543 PE=3 SV=2
Length = 334
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 45 PLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYP 104
PL W GV + + LF + ++ ++LP+ D++LL D L+ Y D
Sbjct: 96 PLPLWLLVIVFGVSISVIVFLFLNFPSLSPQHKQLIRLPKNFKDVKLLSDILSQYTDDNY 155
Query: 105 VPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLI 164
I + Y F+Q F IPG++F+S L+G LFG+ G LV F AT GA+ + +S I
Sbjct: 156 FIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYI 215
Query: 165 GRPLVSWFWPEKLRFFQ 181
GR LV +P+KL+ F
Sbjct: 216 GRNLVRKLFPDKLKLFS 232
>sp|Q08D99|TM41A_BOVIN Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1
Length = 264
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 53 AFVGVFLLFVTGLFCIYLT----------MPAADYGKLKL--PRTIADLRLLKDNLATYA 100
+ +G+ L+F F +YL + A + G L P +A+LR L + L Y
Sbjct: 3 SLLGLLLVFAGSTFALYLLSTRLPRASTLVSAEESGDRSLWFPSDLAELRELSEVLREYR 62
Query: 101 QDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFL 160
+++ V + +CS Y++ Q+F IPG+ F+++LAGALFG GL+L + GA+ C+ L
Sbjct: 63 KEHQVYVFLLFCSAYLYKQSFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLL 122
Query: 161 SKLIGRPLVSWFWPEKLRFFQAEV 184
S + G+ LV +++P+K+ Q +V
Sbjct: 123 SSVFGKQLVVFYFPDKVALLQKKV 146
>sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1
Length = 291
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 12 GSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71
G R R + + G +E P A+ S R L V +F +F +Y
Sbjct: 21 GDRAVRTQGSAAPGSKDHLNEKPCAEA-GSARTSLL-----ILVSIFSCAAFVMFLVYKN 74
Query: 72 MPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIF 128
P + +K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF
Sbjct: 75 FPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIF 134
Query: 129 MSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 135 LSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182
>sp|Q9VX39|TM41_DROME Transmembrane protein 41 homolog OS=Drosophila melanogaster
GN=CG8408 PE=2 SV=2
Length = 320
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 56 GVFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYC 112
G+F+ + + +Y P A++ LK+PR I D ++L L Y Y + G
Sbjct: 87 GIFVASLVTMCYVYAIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVV 146
Query: 113 STYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172
Y+F+QTF IPG++F+S+L G L+ L L+ F + GA+ C+ LS L+GR L+ F
Sbjct: 147 VAYVFLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHF 206
Query: 173 WPEK 176
WP+K
Sbjct: 207 WPKK 210
>sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1
Length = 291
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 1 MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAA------- 53
M A GDG+ R G +P ++ ++ E+ W A
Sbjct: 12 MGADHTTPVGDGAAGTR------------GPAAPGSRDYQKEK----SWAEAGSARMSLL 55
Query: 54 -FVGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
V +FL +F +Y P + +K+PR + D + L L+ Y + V ++
Sbjct: 56 ILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLV 115
Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 116 AYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVV 175
Query: 170 SWFWPEK 176
+ EK
Sbjct: 176 YKYLTEK 182
>sp|A1A5V7|TM41B_DANRE Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1
Length = 282
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 17 RDEEES--VNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPA 74
R+ E S V + + E+P K +S V +F ++ ++ P
Sbjct: 9 RETESSPLVEQEPRPSKETPVPKGAQSPGGASARMSILLLVVIFACSACVMYLVFRNFPQ 68
Query: 75 ---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSL 131
+ K+K+P+ + D + L L+ Y Y ++ Y +TYIF+QTF IPG+IF+S+
Sbjct: 69 LSEDEREKIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSI 128
Query: 132 LAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
L+G L+ L LV + GAS C+ LS L+GRP+V + E+ + + +V
Sbjct: 129 LSGYLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQV 181
>sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1
Length = 269
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 55 VGVFLLFVTGLFCIYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +F + +F +Y P + + GK +K+PR + D + L L+ Y + V ++ Y
Sbjct: 36 VSIFTIAAFLMFLVYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAY 95
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TY+F+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 96 FATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 155
Query: 172 FWPEK 176
+ EK
Sbjct: 156 YLTEK 160
>sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1
Length = 291
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 55 VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +FL +F +Y P + +K+PR + D + L L+ Y + V ++ Y
Sbjct: 58 VSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAY 117
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 118 FATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 177
Query: 172 FWPEK 176
+ EK
Sbjct: 178 YLTEK 182
>sp|A4II98|TM41B_XENTR Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2
SV=1
Length = 278
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 55 VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +FL + +F +Y P + K+K+PR + D + L L+ Y + V ++ Y
Sbjct: 45 VSIFLCAASIMFLVYKHFPQLSEEEREKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAY 104
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS + LS L+GRP+V
Sbjct: 105 FTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFSYLLSYLVGRPVVYK 164
Query: 172 FWPEK 176
+ +K
Sbjct: 165 YLSDK 169
>sp|Q5FVN2|TM41B_RAT Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1
Length = 291
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 65 LFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTF 121
+F +Y P + +K+PR + D + L L+ Y + V ++ Y +TYIF+QTF
Sbjct: 68 MFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTF 127
Query: 122 MIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 128 AIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182
>sp|Q9D8U2|TM41A_MOUSE Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1
Length = 264
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%)
Query: 83 PRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRG 142
P +A+LR L + L Y +++ + +CS Y++ Q F IPG+ F+++LAGALFG G
Sbjct: 45 PSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLG 104
Query: 143 LILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
L+L + GA+ C+ LS L G+ LV ++P+K+ Q +V
Sbjct: 105 LLLCCVLTSVGATGCYLLSSLFGKQLVISYFPDKVALLQKKV 146
>sp|Q96HV5|TM41A_HUMAN Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=2 SV=1
Length = 264
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 54 FVGVFLLFVTGLFCIYLTMPAADYGK------------LKLPRTIADLRLLKDNLATYAQ 101
+G+ L+F F +YL G+ L P +A+LR L + L Y +
Sbjct: 4 LLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRK 63
Query: 102 DYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLS 161
++ + +C Y++ Q F IPG+ F+++LAGALFG GL+L + GA+ C+ LS
Sbjct: 64 EHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLS 123
Query: 162 KLIGRPLVSWFWPEKLRFFQAEV 184
+ G+ LV ++P+K+ Q +V
Sbjct: 124 SIFGKQLVVSYFPDKVALLQRKV 146
>sp|O62126|TM41_CAEEL Transmembrane protein 41 homolog OS=Caenorhabditis elegans
GN=tag-175 PE=3 SV=1
Length = 246
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 57 VFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCS 113
+F F +F +Y P A + LK PR + D + L L+ Y ++ + G
Sbjct: 17 IFATFAVSIFAVYSNFPEVSADEKVHLKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIV 76
Query: 114 TYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW 173
Y+F+Q+F IPG+IF+++L+G LF ++LV + GA+ C+ +SKL GR V +
Sbjct: 77 VYVFLQSFAIPGSIFLTILSGYLFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKF 136
Query: 174 PEKLRFFQAEV 184
PE++ +Q ++
Sbjct: 137 PERIAKWQDDL 147
>sp|Q502G2|T41AA_DANRE Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1
Length = 281
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 78 GKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALF 137
+LK P + +L+ + + L Y ++ ++ +CS Y++ Q F IPG+ F+++LAGALF
Sbjct: 57 SRLKFPSDLDELKEMAELLQFYKTEHTGYVLLLFCSAYLYKQAFAIPGSSFLNILAGALF 116
Query: 138 GVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
G GL+L T GA+ CF LS+ G+ + +P+K+ Q +V
Sbjct: 117 GTWFGLLLTCVLTTVGATLCFLLSQAFGKHHIVKLFPDKVAMLQKKV 163
>sp|Q6NV38|T41AB_DANRE Transmembrane protein 41A-B OS=Danio rerio GN=tmem41ab PE=2 SV=1
Length = 278
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%)
Query: 73 PAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLL 132
P +LK P + +LR L + L Y ++ I +CS Y++ Q+F IPG+ F+++L
Sbjct: 46 PEEKVLRLKFPSDLEELRELAELLKFYKTEHTGYVFILFCSAYLYKQSFAIPGSSFLNML 105
Query: 133 AGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
+GALFG + GLI+ T G+++C+ LS+ G+ + +PEK+ Q V
Sbjct: 106 SGALFGPLHGLIIACTLTTVGSTNCYLLSRTFGKRHIVRLFPEKVAMLQRMV 157
>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
Length = 209
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 94 DNLATYAQDYPVPFIIGY-CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATA 152
D L T+A + F++ Y +T +F+ PG+I ++L AG +FGVI G I V AT
Sbjct: 13 DGLGTWA---AIAFMLLYTVATVVFL-----PGSI-LTLGAGVVFGVILGSIYVFIGATL 63
Query: 153 GASSCFFLSKLIGRPLVS 170
GA++ F + + + R V+
Sbjct: 64 GATAAFLVGRYLARGWVA 81
>sp|P76219|YDJX_ECOLI TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli
(strain K12) GN=ydjX PE=3 SV=2
Length = 236
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 111 YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
Y +I ++PG+I + + G +FG + G +L + AT +S F L++ +GR L+
Sbjct: 51 YILLFIIATLLLLPGSILV-IAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLL 108
>sp|P76221|YDJZ_ECOLI TVP38/TMEM64 family inner membrane protein YdjZ OS=Escherichia coli
(strain K12) GN=ydjZ PE=1 SV=1
Length = 235
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 116 IFMQTFMIPGTIFMSLLAGA-LFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
+ +Q P F+ A A LFG G +L ++ AGA+ CFF+++++GR +V
Sbjct: 71 MILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVV 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,639,814
Number of Sequences: 539616
Number of extensions: 2650056
Number of successful extensions: 7616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 7594
Number of HSP's gapped (non-prelim): 52
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)