Query 029340
Match_columns 195
No_of_seqs 236 out of 1116
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 64.9 13 0.00044 29.4 5.8 28 129-156 50-77 (189)
2 4ezc_A UREA transporter 1; mem 56.0 41 0.0014 29.9 8.0 66 95-165 39-106 (384)
3 3arc_J Photosystem II reaction 33.9 60 0.0021 19.7 3.8 23 42-66 6-28 (40)
4 4dve_A Biotin transporter BIOY 28.2 2.3E+02 0.0078 22.6 10.0 101 56-161 20-147 (198)
5 3iyz_A Aquaporin-4; water tran 21.6 4E+02 0.014 23.1 9.1 22 146-167 250-271 (340)
6 3o7q_A L-fucose-proton symport 19.1 3.7E+02 0.013 21.8 10.8 20 149-168 307-326 (438)
7 4av3_A K(+)-stimulated pyropho 18.9 2E+02 0.0069 27.7 6.3 13 86-98 41-53 (735)
8 4gc0_A D-xylose-proton symport 18.1 78 0.0027 26.7 3.1 28 61-94 452-479 (491)
9 2l60_A Peptide YY; GPCR ligand 15.6 1.5E+02 0.0051 18.1 3.0 18 84-101 16-33 (41)
10 2bf9_A Pancreatic hormone; tur 15.3 1.9E+02 0.0064 17.1 3.3 18 84-101 12-29 (36)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=64.90 E-value=13 Score=29.36 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 029340 129 MSLLAGALFGVIRGLILVVFNATAGASS 156 (195)
Q Consensus 129 L~llaG~lFG~~~G~ll~~~g~tlGA~i 156 (195)
..+++|++|||+.|.+...+...++..+
T Consensus 50 ~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 50 PSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999888877776654
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=56.00 E-value=41 Score=29.89 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhhcccc--hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029340 95 NLATYAQDYPVPFIIGYCSTYIFMQTFMIP--GTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIG 165 (195)
Q Consensus 95 ~L~~~~~~~~~~~~l~fv~~yi~~~~~~IP--gsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~Fll~R~~g 165 (195)
.+++|.++++...-.+=..+==+.|+++.+ .+-+ -++.|..++-++-.+ .+.+|+.++.+.++.+|
T Consensus 39 ~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGl-liLigl~i~sp~~al----~allG~~vstltA~llg 106 (384)
T 4ezc_A 39 EFANWLKDKPQALQFVDWVLRGISQVVFVSNPISGI-LILVGLLVQNPWCAL----NGCVGTVVSTLTALLLS 106 (384)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHH-HHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcHHHHHHHHhcCceEEEecCCcHHHH-HHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhC
Confidence 456777777753333333444466777775 3332 445666555444444 45555555555666655
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=33.90 E-value=60 Score=19.72 Aligned_cols=23 Identities=39% Similarity=0.865 Sum_probs=12.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHH
Q 029340 42 ERFPLTHWEFAAFVGVFLLFVTGLF 66 (195)
Q Consensus 42 ~~~~l~~~~~~~~~~if~~~~~~L~ 66 (195)
+|-|| |.+..+..+.++.+++++
T Consensus 6 GRiPL--Wlvgtv~G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPL--WIVATVAGMGVIVIVGLF 28 (40)
T ss_dssp TSSCH--HHHHHHHHHHHHHHHHHH
T ss_pred CcccE--EeeeeehhhhhhheeeEE
Confidence 58898 655555544444444443
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.25 E-value=2.3e+02 Score=22.60 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCccccccCccCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHhhcccc--------hHH
Q 029340 56 GVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIP--------GTI 127 (195)
Q Consensus 56 ~if~~~~~~L~~~~~~~P~~e~~~l~lP~sle~L~~~~~~L~~~~~~~~~~~~l~fv~~yi~~~~~~IP--------gsv 127 (195)
.+..+...++.++--+.|...-..-..|-|++++--....+--=. .--.+=+++|++.....+| ...
T Consensus 20 l~~~alfaAliavla~i~~Ipip~~pVPiTlQtl~V~LaG~~LG~-----r~G~lsv~lYlllG~~GlPVFagg~gG~~~ 94 (198)
T 4dve_A 20 LTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGP-----KYGTISVGAFLALALIGLPVLTGGNGGAAS 94 (198)
T ss_dssp HHHHHHHHHHHHHHTTSCCBCCSSSSCCBCSTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCCCBTTTBCCSGG
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHHHHHHHHCh-----hHHHHHHHHHHHHHHHcCccccCCCCchhH
Q ss_pred HHHHHHHhhhhhHHHHHHH-------------------HHHHHHHHHHHHHHH
Q 029340 128 FMSLLAGALFGVIRGLILV-------------------VFNATAGASSCFFLS 161 (195)
Q Consensus 128 ~L~llaG~lFG~~~G~ll~-------------------~~g~tlGA~i~Fll~ 161 (195)
++.=.+|++.|+..+..++ .++..+|..++|.++
T Consensus 95 l~gPTgGYLiGF~~aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G~~~iy~~G 147 (198)
T 4dve_A 95 FLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVG 147 (198)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHTHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHHHHH
No 5
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=21.61 E-value=4e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcHH
Q 029340 146 VVFNATAGASSCFFLSKLIGRP 167 (195)
Q Consensus 146 ~~~g~tlGA~i~Fll~R~~gr~ 167 (195)
-++|-.+|+.++-++.|++..+
T Consensus 250 ywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 250 YWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC
Confidence 3578888999888888887643
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=19.10 E-value=3.7e+02 Score=21.77 Aligned_cols=20 Identities=10% Similarity=-0.089 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhcHHH
Q 029340 149 NATAGASSCFFLSKLIGRPL 168 (195)
Q Consensus 149 g~tlGA~i~Fll~R~~gr~~ 168 (195)
+..+|..++-.+++++++..
T Consensus 307 ~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 307 CFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHhcchH
Confidence 34444444444455555443
No 7
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=18.92 E-value=2e+02 Score=27.73 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 029340 86 IADLRLLKDNLAT 98 (195)
Q Consensus 86 le~L~~~~~~L~~ 98 (195)
-|++|+..+.+++
T Consensus 41 ~~~M~eIa~~I~e 53 (735)
T 4av3_A 41 TERMKEISSYIRS 53 (735)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3566666666655
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=18.13 E-value=78 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCccccccCccCCCHHHHHHHHH
Q 029340 61 FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKD 94 (195)
Q Consensus 61 ~~~~L~~~~~~~P~~e~~~l~lP~sle~L~~~~~ 94 (195)
.+++....|...|+..- +++||+.++.+
T Consensus 452 ~~~~~i~~~~~~PETkg------~tLeei~~~f~ 479 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKG------KTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHCCCCTT------CCHHHHGGGTC
T ss_pred HHHHHHHHHheecCCCC------CCHHHHHHHhC
Confidence 34455667788999876 88999866543
No 9
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=15.58 E-value=1.5e+02 Score=18.07 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 029340 84 RTIADLRLLKDNLATYAQ 101 (195)
Q Consensus 84 ~sle~L~~~~~~L~~~~~ 101 (195)
.++|++++....|++|++
T Consensus 16 aspEela~Y~~~Lr~Yin 33 (41)
T 2l60_A 16 LSPEELNRYYASLRHYLN 33 (41)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999999974
No 10
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=15.33 E-value=1.9e+02 Score=17.13 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 029340 84 RTIADLRLLKDNLATYAQ 101 (195)
Q Consensus 84 ~sle~L~~~~~~L~~~~~ 101 (195)
.++|++......|+.|++
T Consensus 12 A~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 12 APVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 679999999999999975
Done!