Query 029340
Match_columns 195
No_of_seqs 236 out of 1116
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 18:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 34.5 28 0.002 19.0 3.7 23 43-67 1-23 (34)
2 d1o82a_ a.64.2.1 (A:) Bacterio 34.2 38 0.0028 20.8 4.8 57 121-179 5-61 (70)
3 d1q90m_ f.23.25.1 (M:) PetM su 23.5 53 0.0039 17.5 4.1 25 138-162 3-28 (34)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 19.9 33 0.0024 22.5 2.8 54 48-105 3-56 (158)
5 d1kqfc_ f.21.1.1 (C:) Formate 18.4 1.1E+02 0.0077 21.8 5.7 17 165-181 188-204 (216)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 16.0 1.2E+02 0.0087 18.5 6.5 35 108-144 50-84 (86)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 14.9 84 0.0062 16.3 3.0 12 134-145 13-24 (32)
8 d2vkva2 a.121.1.1 (A:68-205) T 8.2 1.9E+02 0.014 18.7 4.0 22 86-107 9-30 (138)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 8.2 4.6E+02 0.033 20.6 12.3 17 151-167 410-426 (444)
10 d2p5zx2 b.106.1.1 (X:15-201) H 8.1 93 0.0068 22.1 2.3 18 176-193 155-172 (187)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.54 E-value=28 Score=18.96 Aligned_cols=23 Identities=39% Similarity=0.865 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 029340 43 RFPLTHWEFAAFVGVFLLFVTGLFC 67 (195)
Q Consensus 43 ~~~l~~~~~~~~~~if~~~~~~L~~ 67 (195)
|.|| |.+..+..+.++.+++++.
T Consensus 1 riPL--Wlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 1 RIPL--WIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp CCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCcE--EEeeehhhhhhHhheeeee
Confidence 4566 6555555555555555444
No 2
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=34.19 E-value=38 Score=20.84 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=29.7
Q ss_pred cccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhhhHHHHH
Q 029340 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRF 179 (195)
Q Consensus 121 ~~IPgsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~~~rl~~ 179 (195)
|.||.++--+++.-.==|-|.-++.+.+.+.-+.-++.+ --.||+.++.++.+++++
T Consensus 5 fgipa~ia~~vlniv~agg~vttivsil~avgsgglsll--aaag~e~i~~~lkk~i~~ 61 (70)
T d1o82a_ 5 FGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLL--AAAGRESIKAYLKKEIKK 61 (70)
T ss_dssp HCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHCHHHHHHH--HHTTTSCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhccCcchhhHHHHHHHHccccHHHH--HHhcHHHHHHHHHHHHHH
Confidence 556755422222222335555566555544433333333 245888888888766543
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.49 E-value=53 Score=17.51 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHH
Q 029340 138 GVIRGLILVVFNATA-GASSCFFLSK 162 (195)
Q Consensus 138 G~~~G~ll~~~g~tl-GA~i~Fll~R 162 (195)
|+..|+.+.++|.++ |-.+.|.+-|
T Consensus 3 ~fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 3 EFIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchhHHHHHHHHHHHHHHHhhee
Confidence 344566666666543 4455555544
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=19.85 E-value=33 Score=22.48 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCccccccCccCCCHHHHHHHHHHHHHHHHhCCc
Q 029340 48 HWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPV 105 (195)
Q Consensus 48 ~~~~~~~~~if~~~~~~L~~~~~~~P~~e~~~l~lP~sle~L~~~~~~L~~~~~~~~~ 105 (195)
..|++++++|..+++...+=.|...-.... .-....++++.....+.|..+++.
T Consensus 3 LIELlVViaIIgILaaia~P~~~~~~~~a~----~~~~~~~l~~i~~~~~~~~~~~~~ 56 (158)
T d2pila_ 3 LIELMIVIAIVGILAAVALPAYQDYTARAQ----VSEAILLAEGQKSAVTEYYLNHGK 56 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 478887777666555433333332111100 112345666777777777777653
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=18.35 E-value=1.1e+02 Score=21.85 Aligned_cols=17 Identities=18% Similarity=0.146 Sum_probs=9.0
Q ss_pred cHHHHhhhhhHHHHHHH
Q 029340 165 GRPLVSWFWPEKLRFFQ 181 (195)
Q Consensus 165 gr~~v~~~~~~rl~~~~ 181 (195)
-+++.++.-+.-+++++
T Consensus 188 ~~~~~~~~h~~w~~~~~ 204 (216)
T d1kqfc_ 188 SRRWAKKHHPRWYREIE 204 (216)
T ss_dssp EHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34666665555455443
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=15.99 E-value=1.2e+02 Score=18.52 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHhhcccchHHHHHHHHHhhhhhHHHHH
Q 029340 108 IIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLI 144 (195)
Q Consensus 108 ~l~fv~~yi~~~~~~IPgsv~L~llaG~lFG~~~G~l 144 (195)
.+..+.+.+..+.+.+|.+.+ ...+| ..|.-.|+.
T Consensus 50 ~i~~i~~~~~L~~~Gi~~t~l-~a~~G-~~gvaiGfa 84 (86)
T d2vv5a3 50 GIIAFTLIAALGRVGVQTASV-IAVLG-AAGLVVGLA 84 (86)
T ss_dssp HHHHHHHHHHHHTTTCCSTTH-HHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHH-HHHHH-HHHHHHHHh
Confidence 556666667778899998885 33333 345555543
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.87 E-value=84 Score=16.32 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=5.6
Q ss_pred HhhhhhHHHHHH
Q 029340 134 GALFGVIRGLIL 145 (195)
Q Consensus 134 G~lFG~~~G~ll 145 (195)
...||.-.|.+.
T Consensus 13 alffgiavgiif 24 (32)
T d2e74e1 13 ALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhee
Confidence 344455455444
No 8
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=8.25 E-value=1.9e+02 Score=18.71 Aligned_cols=22 Identities=14% Similarity=-0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhCCchH
Q 029340 86 IADLRLLKDNLATYAQDYPVPF 107 (195)
Q Consensus 86 le~L~~~~~~L~~~~~~~~~~~ 107 (195)
-++++++...++.-..+||+.+
T Consensus 9 r~~lr~~a~~~r~~~~~hP~~a 30 (138)
T d2vkva2 9 QSFLRNNAMSFRRALLRYRDGA 30 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHHHHCccHH
Confidence 6889999999999999999754
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=8.16 E-value=4.6e+02 Score=20.56 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhcHH
Q 029340 151 TAGASSCFFLSKLIGRP 167 (195)
Q Consensus 151 tlGA~i~Fll~R~~gr~ 167 (195)
.+.+.++|+++|.++++
T Consensus 410 ~ia~~~a~~v~~~~~~~ 426 (444)
T d1otsa_ 410 IITGLGATLLAQFTGGK 426 (444)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 45566777777776643
No 10
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=8.06 E-value=93 Score=22.08 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCceEEE
Q 029340 176 KLRFFQAEVLLISLWLYF 193 (195)
Q Consensus 176 rl~~~~~~l~~~g~~~~f 193 (195)
-++-+++.++++|++|+|
T Consensus 155 D~~Fl~RL~ee~Gi~y~F 172 (187)
T d2p5zx2 155 DLTFVSRLLSEVGIWFRF 172 (187)
T ss_dssp HHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 467777777888877776
Done!