BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029341
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
++ ++D Y++ G GGQH NK ESA+R+ H+PTG++ Q DRSQHKNRA+A+ L++ L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
R+ +D Y+S G GGQH NK ESA+R+ H+ TGV+ Q DRSQHKNRA+A+ L++ L
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 63 TDDELFRECE-----MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRA 117
DD++ E E +D Y++ G GGQH NK ESAVR+ H+PTG++ Q DRSQHKN+A
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 118 SALSRLRTLL 127
+A+ L++ L
Sbjct: 285 TAMKMLKSRL 294
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
R+ ++D Y++ G GGQH NK ESAVR++H+PTG++ Q DRSQHKN+ A+ +L+ L
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKNKDQAMKQLKAKL 296
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
++ +D Y++ G GGQH NK +SA+R+ H+PTG++ Q DRSQHKNRA+A+ L++ L
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y+S G GGQH NK +SA+R+ H+PTGV+ + ++RSQHKNRA A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y+S G GGQH NK +SA+R+ H+PTGV+ + ++RSQHKNRA A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y+S G GGQH NK +SA+R+ H+PTGV+ + ++RSQHKNRA A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y+S G GGQH NK +SA+R+ H+PTGV+ + ++RSQHKNRA A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y+S G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 64 DDELFRECE-----MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRAS 118
DD++ E E +D Y++ G GGQH NK ESA+R+ H PTG++ Q DRSQHKN+A+
Sbjct: 226 DDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKAT 285
Query: 119 ALSRLRTLL 127
A+ L++ L
Sbjct: 286 AMKMLKSKL 294
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
++ +D Y++ G GGQH NK ESA+R+ H+PTG++ Q DRSQHKN+ SA L++ L
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRL 294
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
++ +D Y++ G GGQH NK ESA+R+ H+PTG++ Q DRSQHKN+A+A L++ L
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3
SV=1
Length = 365
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 128
+D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 129 LKVRSSVN 136
+K + S N
Sbjct: 300 MKQQDSAN 307
>sp|Q5HSX6|RF2_CAMJR Peptide chain release factor 2 OS=Campylobacter jejuni (strain
RM1221) GN=prfB PE=3 SV=1
Length = 365
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 128
+D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 129 LKVRSSVN 136
+K + S N
Sbjct: 300 MKQQDSAN 307
>sp|A7H5G4|RF2_CAMJD Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=prfB
PE=3 SV=1
Length = 365
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 128
+D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 129 LKVRSSVN 136
+K + S N
Sbjct: 300 MKQQDSAN 307
>sp|Q9PMK5|RF2_CAMJE Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=prfB PE=3
SV=1
Length = 365
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 128
+D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 129 LKVRSSVN 136
+K + S N
Sbjct: 300 MKQQDSAN 307
>sp|A8FNC2|RF2_CAMJ8 Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=prfB
PE=3 SV=1
Length = 365
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 128
+D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 129 LKVRSSVN 136
+K + S N
Sbjct: 300 MKQQDSAN 307
>sp|Q9ZMR1|RF2_HELPJ Peptide chain release factor 2 OS=Helicobacter pylori (strain J99)
GN=prfB PE=3 SV=1
Length = 363
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B2US00|RF2_HELPS Peptide chain release factor 2 OS=Helicobacter pylori (strain
Shi470) GN=prfB PE=3 SV=1
Length = 363
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B5Z9U4|RF2_HELPG Peptide chain release factor 2 OS=Helicobacter pylori (strain G27)
GN=prfB PE=3 SV=1
Length = 363
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B6JPR7|RF2_HELP2 Peptide chain release factor 2 OS=Helicobacter pylori (strain P12)
GN=prfB PE=3 SV=1
Length = 363
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q1CUY8|RF2_HELPH Peptide chain release factor 2 OS=Helicobacter pylori (strain
HPAG1) GN=prfB PE=3 SV=1
Length = 363
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q17YT5|RF2_HELAH Peptide chain release factor 2 OS=Helicobacter acinonychis (strain
Sheeba) GN=prfB PE=3 SV=1
Length = 363
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 74 DAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
D Y++ G GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 61 ELTDDELF----RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNR 116
EL DD ++ +D Y+S G GGQH NK ESAVR+ H+PT ++ Q DR QHKN+
Sbjct: 224 ELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITHIPTNIVVQCQNDRDQHKNK 283
Query: 117 ASAL----SRLRTLLALKVRSSVN 136
ASA+ SRL L LK + N
Sbjct: 284 ASAMKVLKSRLYELEKLKKQEESN 307
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SAVR+ H+PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 VDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRL 297
>sp|Q63SP0|RF2_BURPS Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
K96243) GN=prfB PE=3 SV=1
Length = 367
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SAVR+ H+PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|A3NX26|RF2_BURP0 Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
1106a) GN=prfB PE=3 SV=3
Length = 367
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SAVR+ H+PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q62J00|RF2_BURMA Peptide chain release factor 2 OS=Burkholderia mallei (strain ATCC
23344) GN=prfB PE=3 SV=1
Length = 367
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SAVR+ H+PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=prfB PE=3 SV=1
Length = 367
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SAVR+ H+PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLAL 129
+ +D Y++ G GGQH NK +SAVR+ H+PTG++A+ +DRSQH+N+A AL L +
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIVE 290
Query: 130 KVRS 133
K RS
Sbjct: 291 KDRS 294
>sp|A6W1C2|RF1_MARMS Peptide chain release factor 1 OS=Marinomonas sp. (strain MWYL1)
GN=prfA PE=3 SV=1
Length = 362
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D +++ G GGQH NK +SA+RL H+PTGV+ + E+RSQHKNRA A+S L + L
Sbjct: 226 IDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSLLASRL 280
>sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain
Marseille) GN=prfA PE=3 SV=1
Length = 360
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRL 123
+ +D Y++ G GGQH NK +SAVR+ H+PTG++ + +DRSQHKN+ASAL L
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVL 274
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRL 123
E +D Y+S G GGQH NK +SA+R+ H+PTG++ + E+RSQHKNRA A++ L
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWL 276
>sp|B9KEY7|RF2_CAMLR Peptide chain release factor 2 OS=Campylobacter lari (strain RM2100
/ D67 / ATCC BAA-1060) GN=prfB PE=3 SV=1
Length = 366
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK ESAVR+ H+P+G++ Q DRSQHKN+A+A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain
EbN1) GN=prfB PE=3 SV=1
Length = 367
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRT-LLALKV 131
+D Y++ G GGQH NK +SAVR+ H PTGV+ Q DRSQHKN+A A+S L+ L L++
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHEPTGVVVQCQNDRSQHKNKAEAMSMLKARLYELEL 302
Query: 132 R 132
R
Sbjct: 303 R 303
>sp|B2SFF6|RF1_FRATM Peptide chain release factor 1 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|A4IWC1|RF1_FRATW Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q0BKE8|RF1_FRATO Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q2A1Q0|RF1_FRATH Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|A7NE96|RF1_FRATF Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q5NIA8|RF1_FRATT Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q14JR1|RF1_FRAT1 Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRL 123
+ MD ++S G GGQH N +SAVRL H+PTGV+A+ ++RSQHKNRA A+ L
Sbjct: 224 DIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQML 277
>sp|B0TX37|RF1_FRAP2 Peptide chain release factor 1 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 70 ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+ ++D +++ G GGQH NK +SA+R+ H+PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|P07012|RF2_ECOLI Peptide chain release factor 2 OS=Escherichia coli (strain K12)
GN=prfB PE=1 SV=3
Length = 365
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 51 SSSSSSRNYLELTDDELFR----ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQA 106
+S SS+ Y E+ DD + +D Y++ G GGQH N+ ESAVR+ H+PTG++ Q
Sbjct: 215 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQC 274
Query: 107 AEDRSQHKNRASALSRLRTLL 127
DRSQHKN+ A+ +++ L
Sbjct: 275 QNDRSQHKNKDQAMKQMKAKL 295
>sp|B1XEH8|RF2_ECODH Peptide chain release factor 2 OS=Escherichia coli (strain K12 /
DH10B) GN=prfB PE=3 SV=1
Length = 365
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 51 SSSSSSRNYLELTDDELFR----ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQA 106
+S SS+ Y E+ DD + +D Y++ G GGQH N+ ESAVR+ H+PTG++ Q
Sbjct: 215 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQC 274
Query: 107 AEDRSQHKNRASALSRLRTLL 127
DRSQHKN+ A+ +++ L
Sbjct: 275 QNDRSQHKNKDQAMKQMKAKL 295
>sp|C5A0G3|RF2_ECOBW Peptide chain release factor 2 OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=prfB PE=3 SV=1
Length = 365
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 51 SSSSSSRNYLELTDDELFR----ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQA 106
+S SS+ Y E+ DD + +D Y++ G GGQH N+ ESAVR+ H+PTG++ Q
Sbjct: 215 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQC 274
Query: 107 AEDRSQHKNRASALSRLRTLL 127
DRSQHKN+ A+ +++ L
Sbjct: 275 QNDRSQHKNKDQAMKQMKAKL 295
>sp|B3PJP4|RF1_CELJU Peptide chain release factor 1 OS=Cellvibrio japonicus (strain
Ueda107) GN=prfA PE=3 SV=1
Length = 360
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 73 MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
+D Y++ G GGQH NK +SA+R+ H+PTG++ + ++RSQHKNRA A+S L T L
Sbjct: 226 IDTYRASGAGGQHVNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSLLATKL 280
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 69 RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
++ +D Y++ G GGQH NK ESA+R+ H PTG++ Q DRSQHKN+++A+ L++ L
Sbjct: 236 KDLRIDTYRASGAGGQHVNKTESAIRITHEPTGIVVQCQNDRSQHKNKSAAMKMLKSRL 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,298,997
Number of Sequences: 539616
Number of extensions: 2525071
Number of successful extensions: 14845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 13254
Number of HSP's gapped (non-prelim): 1372
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)