Query 029341
Match_columns 195
No_of_seqs 266 out of 1121
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 1.2E-44 4.2E-49 327.9 11.3 158 2-174 141-327 (371)
2 1rq0_A RF-1, peptide chain rel 100.0 2.4E-44 8.1E-49 323.2 12.0 158 2-174 104-290 (342)
3 2b3t_B RF-1, peptide chain rel 100.0 2.1E-44 7.3E-49 325.4 11.0 158 2-174 127-314 (360)
4 3d5a_X RF1, peptide chain rele 100.0 1.2E-44 4.1E-49 326.4 6.5 158 2-174 123-309 (354)
5 1gqe_A Release factor 2, RF2; 100.0 2.1E-43 7.2E-48 319.5 12.3 161 2-174 144-330 (365)
6 2ihr_1 Peptide chain release f 100.0 4.3E-43 1.5E-47 317.4 12.2 159 2-174 132-318 (365)
7 2rsm_A Probable peptide chain 100.0 1.1E-29 3.7E-34 197.7 9.6 76 55-134 36-111 (115)
8 2jva_A Peptidyl-tRNA hydrolase 99.9 6.5E-27 2.2E-31 180.4 9.2 70 59-132 7-100 (108)
9 1j26_A Immature colon carcinom 99.9 1.4E-26 4.8E-31 179.6 10.6 70 59-132 14-108 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 3.9E-25 1.3E-29 177.2 6.3 73 58-134 6-102 (140)
11 1vig_A Vigilin; RNA-binding pr 42.4 11 0.00038 25.4 1.7 45 79-126 20-69 (71)
12 2cte_A Vigilin; K homology typ 41.8 12 0.00042 26.5 1.9 46 80-130 33-85 (94)
13 2ctl_A Vigilin; K homology typ 40.3 27 0.00092 25.0 3.6 48 79-129 32-87 (97)
14 2axy_A Poly(RC)-binding protei 37.9 18 0.0006 24.4 2.1 46 80-128 21-71 (73)
15 1we8_A Tudor and KH domain con 37.2 21 0.00073 25.6 2.6 45 80-129 31-86 (104)
16 2a9s_A Competence/damage-induc 37.2 59 0.002 25.9 5.5 123 6-131 13-166 (171)
17 2ctm_A Vigilin; K homology typ 37.0 30 0.001 24.7 3.3 50 80-132 33-88 (95)
18 2ctf_A Vigilin; K homology typ 35.2 40 0.0014 24.4 3.9 46 80-129 43-92 (102)
19 2ccq_A P97, peptide N-glycanas 32.8 29 0.00098 25.4 2.7 55 113-190 15-72 (99)
20 2ctj_A Vigilin; K homology typ 31.6 18 0.00061 26.1 1.4 46 80-128 33-84 (95)
21 2ctk_A Vigilin; K homology typ 29.6 47 0.0016 24.0 3.4 50 80-132 33-87 (104)
22 2d5u_A N-glycanase 1; pngase, 28.6 29 0.001 26.5 2.2 54 114-190 31-87 (124)
23 2yqr_A KIAA0907 protein; struc 24.3 51 0.0017 24.8 2.9 24 102-129 76-99 (119)
24 3lcm_A SMU.1420, putative oxid 23.9 29 0.00099 27.2 1.4 24 167-190 83-106 (196)
25 2hh3_A KH-type splicing regula 23.2 51 0.0018 24.0 2.6 47 80-129 27-80 (106)
26 1ec6_A RNA-binding protein NOV 22.5 64 0.0022 22.1 2.9 49 80-131 19-77 (87)
27 2amj_A Modulator of drug activ 22.4 34 0.0012 27.0 1.6 23 167-189 80-102 (204)
28 1dtj_A RNA-binding neurooncolo 22.1 34 0.0012 22.7 1.3 45 80-127 19-73 (76)
29 1k1g_A SF1-BO isoform; splicin 21.6 53 0.0018 25.0 2.5 23 102-128 76-98 (131)
30 3krm_A Insulin-like growth fac 21.1 33 0.0011 25.9 1.2 48 80-130 101-157 (163)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-44 Score=327.91 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=121.3
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCc------
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNY------ 59 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~------ 59 (195)
.+++||+||.+||+++||++++++..+++.+|||||++.|+|+++|. +|.| +++.+.|
T Consensus 141 fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~ 220 (371)
T 1zbt_A 141 FAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVM 220 (371)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEe
Confidence 36899999999999999999999999999999999999999998765 4544 1222222
Q ss_pred -------cccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341 60 -------LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVR 132 (195)
Q Consensus 60 -------~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~ 132 (195)
+.|++ +||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|.....
T Consensus 221 Pe~~ev~i~I~~----~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~ 296 (371)
T 1zbt_A 221 PEVEEVEYEIDP----KDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFA 296 (371)
T ss_dssp ECCCGGGSCCCG----GGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCc----CcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 4569999999999999999999999999999999999999999999999999999999876655
Q ss_pred hhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341 133 SSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~ 174 (195)
++.+.+ ....|++++++|+||++||||| ||+
T Consensus 297 ~~~~~~---------~~~~r~~~ig~g~Rse~IRtYn--f~q 327 (371)
T 1zbt_A 297 QIAQDE---------QDAERKSTVGTGDRSERIRTYN--FPQ 327 (371)
T ss_dssp HHHHHH---------TCC----CCSCSCTTSEEEEEE--TTT
T ss_pred HHHHHH---------HHHHHHhhccccccCCCeeeEE--CCC
Confidence 554432 1346899999999999999999 566
No 2
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=2.4e-44 Score=323.23 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=120.4
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCc------
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNY------ 59 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~------ 59 (195)
.+++||+||.+||+++||++++++..+++.+||+||++.|+|+++|. +|.| +++.+.|
T Consensus 104 fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~ 183 (342)
T 1rq0_A 104 FARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVL 183 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEe
Confidence 36899999999999999999999999999999999999999998765 4544 1222222
Q ss_pred -------cccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341 60 -------LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVR 132 (195)
Q Consensus 60 -------~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~ 132 (195)
+.|++ +||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++|+++|.....
T Consensus 184 Pe~~~~~i~i~~----~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 259 (342)
T 1rq0_A 184 PEIEEKDIEIRP----EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQK 259 (342)
T ss_dssp ECCCGGGSCCCG----GGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCh----hHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 3569999999999999999999999999999999999999999999999999999999876665
Q ss_pred hhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341 133 SSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~ 174 (195)
++...+ ....|++++++++||++||||| ||+
T Consensus 260 ~~~~~~---------~~~~r~~~i~~g~Rse~IRtYn--f~~ 290 (342)
T 1rq0_A 260 EQKERE---------ISQKRKSQIGTGERSEKIRTYN--FPQ 290 (342)
T ss_dssp HHHHTT---------TCC----------CCCEEEEEE--TTT
T ss_pred HHHHHH---------HHHHHHhhcccccccCCeEEEE--CCC
Confidence 554433 1346899999999999999999 566
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=2.1e-44 Score=325.40 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=124.4
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCc------
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNY------ 59 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~------ 59 (195)
.+++||+||.+||+++||++++++..+++.+||+||++.|+|+++|. +|.| +++.+.|
T Consensus 127 fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~ 206 (360)
T 2b3t_B 127 FAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVM 206 (360)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEe
Confidence 36899999999999999999999999999999999999999998865 4544 1122211
Q ss_pred --------cccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHH
Q 029341 60 --------LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKV 131 (195)
Q Consensus 60 --------~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~ 131 (195)
+.|++ +||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|....
T Consensus 207 Pe~~~~e~i~i~~----~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~ 282 (360)
T 2b3t_B 207 PELPDAELPDVNP----ADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAE 282 (360)
T ss_dssp BCCCTTTCCCCCS----SSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTT
T ss_pred cCcccccccccCh----hheEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23333 356999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341 132 RSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~ 174 (195)
.++.+.+ ....|++++++|+||++||||| ||+
T Consensus 283 ~~~~~~~---------~~~~r~~~i~~g~rse~IRtYn--f~~ 314 (360)
T 2b3t_B 283 MAKRQQA---------EASTRRNLLGSGDRSDRNRTYN--FPQ 314 (360)
T ss_dssp TTSCC---------------CCC-------CCEEEEEE--TTT
T ss_pred HHHHHHH---------HHHHHHHhcccccccCCeeeEE--CCC
Confidence 5554432 1446899999999999999999 566
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=1.2e-44 Score=326.44 Aligned_cols=158 Identities=24% Similarity=0.274 Sum_probs=132.8
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCc------
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNY------ 59 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~------ 59 (195)
.+++||+||.+||+++||++++++..+++.+||+||++.|+|+++|. +|.| +++.+.|
T Consensus 123 fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~ 202 (354)
T 3d5a_X 123 FARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVL 202 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEe
Confidence 36899999999999999999999999999999999999999998765 4544 1222222
Q ss_pred -------cccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341 60 -------LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVR 132 (195)
Q Consensus 60 -------~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~ 132 (195)
+.|++. ||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.||++|+++|.....
T Consensus 203 P~~~~~~i~i~~~----dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 278 (354)
T 3d5a_X 203 PKAEEEDFALNMD----EIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKR 278 (354)
T ss_dssp ECCCCCCCCCCGG----GEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccCcc----ceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 459999999999999999999999999999999999999999999999999999998876555
Q ss_pred hhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341 133 SSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~ 174 (195)
++...+ ....|++++++|+||++||||| ||+
T Consensus 279 ~~~~~~---------~~~~r~~~i~~g~rse~IRtYn--f~q 309 (354)
T 3d5a_X 279 AEEAER---------LRKTRLAQIGTGERSEKIRTYN--FPQ 309 (354)
T ss_dssp HHHHHH---------HHHHHHHHSCGGGGSCSSEEEE--TTT
T ss_pred HHHHHH---------HHHHHHhhcccccccCCeeeEE--CCC
Confidence 543332 1345789999999999999999 566
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=2.1e-43 Score=319.46 Aligned_cols=161 Identities=21% Similarity=0.274 Sum_probs=130.8
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCccccCh-
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNYLELTD- 64 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~~~i~~- 64 (195)
.+++||+||.+||+++||++++++..+++.+|||||++.|+|+++|. +|.| +++.+||..+..
T Consensus 144 fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~ 223 (365)
T 1gqe_A 144 WASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVY 223 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEe
Confidence 36899999999999999999999999999999999999999998765 4544 667777643211
Q ss_pred ----h----hh-hccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 029341 65 ----D----EL-FRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSV 135 (195)
Q Consensus 65 ----~----dL-~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~~~~ 135 (195)
+ ++ ++||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|.....++.
T Consensus 224 Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~ 303 (365)
T 1gqe_A 224 PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKK 303 (365)
T ss_dssp ECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12 34679999999999999999999999999999999999999999999999999999998876555444
Q ss_pred ccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341 136 NLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~ 174 (195)
+.+. ...|+.+. ...||+|||||| ||+
T Consensus 304 ~~~~---------~~~r~~~~-~i~~G~~IRtY~--f~~ 330 (365)
T 1gqe_A 304 NAEK---------QAMEDNKS-DIGWGSQIRSYV--LDD 330 (365)
T ss_dssp HHHT---------TCCSTTCC-CCCSCSEEEEEE--GGG
T ss_pred HHHH---------HHHhhhhc-ccCccCCeEeEE--CCC
Confidence 4331 23444322 234777999999 776
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=4.3e-43 Score=317.38 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=130.0
Q ss_pred hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCccccCh-
Q 029341 2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNYLELTD- 64 (195)
Q Consensus 2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~~~i~~- 64 (195)
.+++||+||.+||+++||++++++..+++.+|||||++.|+|+++|. +|.| +++.+||+.+..
T Consensus 132 fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~ 211 (365)
T 2ihr_1 132 WAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVI 211 (365)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEe
Confidence 36799999999999999999999999999999999999999998765 4544 566777644311
Q ss_pred ----h----hh-hccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 029341 65 ----D----EL-FRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSV 135 (195)
Q Consensus 65 ----~----dL-~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~~~~ 135 (195)
+ ++ +.||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|.....++.
T Consensus 212 P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~ 291 (365)
T 2ihr_1 212 PEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKR 291 (365)
T ss_dssp EECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12 34679999999999999999999999999999999999999999999999999999998876555444
Q ss_pred ccCCCCCCccccccCCC--CCccccCcccCccCCCCCChhH
Q 029341 136 NLDAYSPPPKLLQILPP--KSTIRSSEVGAQIGPNNPKFAL 174 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~r--ksq~r~~~r~ekIrtyn~~fp~ 174 (195)
+.+. ...| +++++ ||+|||||| ||+
T Consensus 292 ~~~~---------~~~r~~~~~i~---~G~~IRtYn--f~~ 318 (365)
T 2ihr_1 292 EEEL---------KALRGEVRPIE---WGSQIRSYV--LDK 318 (365)
T ss_dssp HHHT---------TTTTCCSCCSC---CCSCSEEEE--GGG
T ss_pred HHHH---------HHHHhhhhccC---ccCCeeeEE--CCC
Confidence 4331 2334 44544 556899999 776
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.96 E-value=1.1e-29 Score=197.68 Aligned_cols=76 Identities=36% Similarity=0.506 Sum_probs=69.2
Q ss_pred CCCCccccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 029341 55 SSRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSS 134 (195)
Q Consensus 55 ~~~~~~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~~~ 134 (195)
.....+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++|+++|...+..+
T Consensus 36 d~~~~l~I~~~dl----~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 36 DYPALLPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp CCCCSCCCCGGGC----EEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCccCCcCHHHe----EEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445678888887 999999999999999999999999999999999999999999999999999999998766543
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.94 E-value=6.5e-27 Score=180.44 Aligned_cols=70 Identities=39% Similarity=0.633 Sum_probs=64.5
Q ss_pred ccccChhhhhccceeeeeecCCCCCCCCCccCceEEEEE------cc-----------------cc-cEEEEcccCCHHH
Q 029341 59 YLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKH------VP-----------------TG-VIAQAAEDRSQHK 114 (195)
Q Consensus 59 ~~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h------~P-----------------tG-i~v~~~~~RSq~~ 114 (195)
-+.|+++|| +|+|+|||||||||||||+|+|+|+| +| || |+|+|+++|||++
T Consensus 7 ~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 82 (108)
T 2jva_A 7 NVHLPDAEI----ELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQ 82 (108)
T ss_dssp SCEECGGGE----EEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHH
T ss_pred ccccChHHE----EEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHH
Confidence 456777666 99999999999999999999999999 99 88 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029341 115 NRASALSRLRTLLALKVR 132 (195)
Q Consensus 115 Nk~~Al~rL~~~l~~~~~ 132 (195)
||+.|+++|+++|..+..
T Consensus 83 Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 83 NRADALLRLSELIVNAAK 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 999999999999987664
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.94 E-value=1.4e-26 Score=179.57 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=64.3
Q ss_pred ccccChhhhhccceeeeeecCCCCCCCCCccCceEEEE-Ecccc------------------------cEEEEcccCCHH
Q 029341 59 YLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLK-HVPTG------------------------VIAQAAEDRSQH 113 (195)
Q Consensus 59 ~~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~-h~PtG------------------------i~v~~~~~RSq~ 113 (195)
-+.|++.|| +++|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|||+
T Consensus 14 ~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~ 89 (112)
T 1j26_A 14 SSYIPLDRL----SISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQF 89 (112)
T ss_dssp CCCCCTTTS----EEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHH
T ss_pred EEecChHHe----EEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHH
Confidence 356777776 9999999999999999999999998 99997 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029341 114 KNRASALSRLRTLLALKVR 132 (195)
Q Consensus 114 ~Nk~~Al~rL~~~l~~~~~ 132 (195)
+||++||++|+++|..+..
T Consensus 90 ~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 90 RNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999987653
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.91 E-value=3.9e-25 Score=177.24 Aligned_cols=73 Identities=37% Similarity=0.608 Sum_probs=65.9
Q ss_pred CccccChhhhhccceeeeeecCCCCCCCCCccCceEEEE------Eccc-----------------c-cEEEEcccCCHH
Q 029341 58 NYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLK------HVPT-----------------G-VIAQAAEDRSQH 113 (195)
Q Consensus 58 ~~~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~------h~Pt-----------------G-i~v~~~~~RSq~ 113 (195)
.-+.|++.|| +|+|+|||||||||||||+|+|+|+ |+|+ | |+|+|+++|||+
T Consensus 6 ~~i~I~~~el----~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~ 81 (140)
T 4dh9_Y 6 RHVAIPDGEL----EITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE 81 (140)
T ss_dssp SSSCCCTTCS----EEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred CCCccChHHe----EEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence 3467777776 9999999999999999999999999 6997 5 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 029341 114 KNRASALSRLRTLLALKVRSS 134 (195)
Q Consensus 114 ~Nk~~Al~rL~~~l~~~~~~~ 134 (195)
+||+.|+++|.++|..+...+
T Consensus 82 ~Nr~~A~~rL~~~l~~a~~~p 102 (140)
T 4dh9_Y 82 LNREAALARLVAMIKELTTEK 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 999999999999998877643
No 11
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=42.39 E-value=11 Score=25.38 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCCCCCCc--cCceEEEEEccccc---EEEEcccCCHHHHHHHHHHHHHHH
Q 029341 79 PGPGGQHRNK--RESAVRLKHVPTGV---IAQAAEDRSQHKNRASALSRLRTL 126 (195)
Q Consensus 79 sGpGGQ~VNk--~~taVrl~h~PtGi---~v~~~~~RSq~~Nk~~Al~rL~~~ 126 (195)
=||||.++|+ -+|.|+|..-+.|- .|+.... . .+-+.|.+.+..+
T Consensus 20 IG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~--~~v~~A~~~I~~i 69 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-P--QGVQQAKRELLEL 69 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-S--HHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-H--HHHHHHHHHHHHH
Confidence 3899999994 57888887766661 2333333 2 4567777776653
No 12
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.83 E-value=12 Score=26.54 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCCCCCCCcc--CceEEEEEcc----cc-cEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNKR--ESAVRLKHVP----TG-VIAQAAEDRSQHKNRASALSRLRTLLALK 130 (195)
Q Consensus 80 GpGGQ~VNk~--~taVrl~h~P----tG-i~v~~~~~RSq~~Nk~~Al~rL~~~l~~~ 130 (195)
||||.++++- +|.|+|..-+ +| ++|.. . ..+-+.|.+++..++...
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G--~---~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG--T---KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE--C---HHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE--C---HHHHHHHHHHHHHHhhcc
Confidence 8999999953 5666665433 45 44433 2 467778888888776553
No 13
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.27 E-value=27 Score=24.97 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCCCCCCCCc--cCceEEEEEcccc------cEEEEcccCCHHHHHHHHHHHHHHHHHH
Q 029341 79 PGPGGQHRNK--RESAVRLKHVPTG------VIAQAAEDRSQHKNRASALSRLRTLLAL 129 (195)
Q Consensus 79 sGpGGQ~VNk--~~taVrl~h~PtG------i~v~~~~~RSq~~Nk~~Al~rL~~~l~~ 129 (195)
=||||.++|+ -+|.|+|..-+.| -.|..... ..|-+.|..++..++..
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGE 87 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHH
Confidence 3899999995 4678887765555 13444442 34777888888877654
No 14
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=37.89 E-value=18 Score=24.41 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=30.1
Q ss_pred CCCCCCCCc--cCceEEEEEccccc---EEEEcccCCHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVPTGV---IAQAAEDRSQHKNRASALSRLRTLLA 128 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~PtGi---~v~~~~~RSq~~Nk~~Al~rL~~~l~ 128 (195)
|+||.++++ .+|.++|.-.+.|- +|+.... ..+-..|.+.+..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 899999984 46778877666651 3444443 3566778777776654
No 15
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=37.25 E-value=21 Score=25.63 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCCCCCCc--cCceEEEEEcc--------cc-cEEEEcccCCHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVP--------TG-VIAQAAEDRSQHKNRASALSRLRTLLAL 129 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~P--------tG-i~v~~~~~RSq~~Nk~~Al~rL~~~l~~ 129 (195)
|+||.++++ -+|.|+|.--+ ++ ++|....+ +-+.|.+.+.+++..
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSE 86 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhh
Confidence 788988883 45556655332 45 55555443 468888888888754
No 16
>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1
Probab=37.19 E-value=59 Score=25.90 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=71.4
Q ss_pred HHHHhHHHHHHcCCeeeeeeccCCCCCC-eeEEEEeecCCCCcccc---CC-CCCCCCccccChhhh-------------
Q 029341 6 QFLLRIPQLRRKNINFPSYKHRGNYQPL-FLSCNYSTNDNCSSSSS---SS-SSSSRNYLELTDDEL------------- 67 (195)
Q Consensus 6 ~f~~~~~~a~r~~~~~~~v~~~~~~~~g-~~S~~~~~~g~~~~~~g---~~-~~~~~~~~~i~~~dL------------- 67 (195)
|-..-.+.++++|+.+-+.|++.| | +-+.+.++.|...+..| ++ ...|...+.++++.|
T Consensus 13 l~~~v~~~L~~~~~tla~AEScTG---Glla~~lt~vpGaS~~f~gG~VtYsn~~K~~lLgV~~~~L~~~GaVS~evA~~ 89 (171)
T 2a9s_A 13 LARRIITDFTPLGLMVSTAESCTG---GLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQ 89 (171)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTT---THHHHHHTTSTTGGGTEEEEEEECSHHHHHHHHCCCHHHHHHHCSSSHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeHHhhH---HHHHHHHHhCCCchhhcCCeEEecCHHHHHHHcCCCHHHHHhcCCCCHHHHHH
Confidence 334455678888999999999974 5 44455555554433333 22 123334455554433
Q ss_pred ---------hccceeeeeecCCCCCCCCCccCceEEEE-Ecccc-cEEE-Ecc-cCCHHHHHHHHHHHHHHHHHHHH
Q 029341 68 ---------FRECEMDAYKSPGPGGQHRNKRESAVRLK-HVPTG-VIAQ-AAE-DRSQHKNRASALSRLRTLLALKV 131 (195)
Q Consensus 68 ---------~~~~~i~~~RssGpGGQ~VNk~~taVrl~-h~PtG-i~v~-~~~-~RSq~~Nk~~Al~rL~~~l~~~~ 131 (195)
..|+-+.+.=--||||..-.|.--.|.+- ..|.| ..+. +.- .-++..||..+...--.+|...+
T Consensus 90 MA~ga~~~~~ad~avavTGiAGP~g~~~~kpvGtV~ia~a~~~~~~~~~~~~f~~g~R~~ir~~a~~~AL~~L~~~L 166 (171)
T 2a9s_A 90 MAHGALYRSRANFAVAVTGIAGPGGGSAEKPVGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEMLIALN 166 (171)
T ss_dssp HHHHHHHTSSCSEEEEEEECCSSSCCCSSSCTTEEEEEEEETTSCEEEEEEECCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhCCCEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12555667766889876666666666665 45777 3333 322 34677788777655555554444
No 17
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.00 E-value=30 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCCCCCCCc--cCceEEEEEccccc----EEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341 80 GPGGQHRNK--RESAVRLKHVPTGV----IAQAAEDRSQHKNRASALSRLRTLLALKVR 132 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~PtGi----~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~ 132 (195)
||||.++++ -+|.|+|..-+.|= .|+.... ..|-+.|.+.|..++.....
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHHHH
Confidence 789998884 46777777655551 3333332 26788898888887655443
No 18
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=35.19 E-value=40 Score=24.37 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=30.1
Q ss_pred CCCCCCCCccC---ceEEEEEcccc-cEEEEcccCCHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNKRE---SAVRLKHVPTG-VIAQAAEDRSQHKNRASALSRLRTLLAL 129 (195)
Q Consensus 80 GpGGQ~VNk~~---taVrl~h~PtG-i~v~~~~~RSq~~Nk~~Al~rL~~~l~~ 129 (195)
|+||+++++.. +.|+| ++|.+ =.|+.... ...-+.|...|..++..
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHH
Confidence 78999999643 46777 46732 34455554 45667788888776654
No 19
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=32.82 E-value=29 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH---HHHHHHHHHHhcCCC
Q 029341 113 HKNRASALSRLRTLLALKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL---GMQALLDLIFAVEGS 189 (195)
Q Consensus 113 ~~Nk~~Al~rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~---~l~~~ld~~~~~~~~ 189 (195)
......|++.|...+...+..+.+.+ | | +||.-|+.|-. -+...+|.|.++|+.
T Consensus 15 ~~~~~~a~~tL~k~l~Nil~~P~e~K-y--------------------R--~Ir~~N~~f~~~v~~~~G~~e~L~a~GF~ 71 (99)
T 2ccq_A 15 PETFLEASKLLLTYADNILRNPNDEK-Y--------------------R--SIRIGNTAFSTRLLPVRGAVECLFEMGFE 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCGG-G--------------------G--EEETTCHHHHHHTTTSTTHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcc-c--------------------c--eeecCCHHHHHHhcCCccHHHHHHHccce
Confidence 34568899999888888887655433 1 2 68888877765 233568889999886
Q ss_pred c
Q 029341 190 V 190 (195)
Q Consensus 190 ~ 190 (195)
.
T Consensus 72 ~ 72 (99)
T 2ccq_A 72 E 72 (99)
T ss_dssp E
T ss_pred e
Confidence 4
No 20
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.58 E-value=18 Score=26.05 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=28.2
Q ss_pred CCCCCCCCc--cCc-eEEEEEcccc---cEEEEcccCCHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RES-AVRLKHVPTG---VIAQAAEDRSQHKNRASALSRLRTLLA 128 (195)
Q Consensus 80 GpGGQ~VNk--~~t-aVrl~h~PtG---i~v~~~~~RSq~~Nk~~Al~rL~~~l~ 128 (195)
||||..+|+ -+| .|.|..-.+| -.|+.... ..+-+.|.+++..++.
T Consensus 33 G~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~---~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 33 GTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGP---SSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESC---HHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcC---HHHHHHHHHHHHHHHh
Confidence 799999995 345 6777554456 12333331 1266778777777654
No 21
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.58 E-value=47 Score=23.99 Aligned_cols=50 Identities=18% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCCCCCCCc--cCceEEEEEcccc---cEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341 80 GPGGQHRNK--RESAVRLKHVPTG---VIAQAAEDRSQHKNRASALSRLRTLLALKVR 132 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~PtG---i~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~ 132 (195)
||||-++++ -+|.|+|..-+.| =.|+.... . .|-+.|.+.+..++.....
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~--~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL--A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC--H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC--H-HHHHHHHHHHHHHHhhHHH
Confidence 899999995 5678887765554 12333332 2 6788898888887765443
No 22
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=28.57 E-value=29 Score=26.45 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH---HHHHHHHHHHhcCCCc
Q 029341 114 KNRASALSRLRTLLALKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL---GMQALLDLIFAVEGSV 190 (195)
Q Consensus 114 ~Nk~~Al~rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~---~l~~~ld~~~~~~~~~ 190 (195)
.....|++.|...+...+..+.+.+ | | +||..|+.|-. -+...+|.|.++|+..
T Consensus 31 ~~~~~a~~tL~kil~NIl~~P~e~K-y--------------------R--kIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~ 87 (124)
T 2d5u_A 31 ETFLEASKLLLTYADNILRNPSDEK-Y--------------------R--SIRIGNTAFSTRLLPVRGAVECLFEMGFEE 87 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGG-G--------------------S--EEECCCHHHHHTTSSSTTHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccc-c--------------------e--eeecCCHHHHHHhcCCccHHHHHHHccccc
Confidence 4578899999988888887655443 1 2 68888877765 3335688888888864
No 23
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.30 E-value=51 Score=24.80 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=14.9
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHHHHHH
Q 029341 102 VIAQAAEDRSQHKNRASALSRLRTLLAL 129 (195)
Q Consensus 102 i~v~~~~~RSq~~Nk~~Al~rL~~~l~~ 129 (195)
+.|.+.+. .+-+.|.+++..+|..
T Consensus 76 V~I~a~~~----e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 76 IYISHPKP----EGLAAAKKLCENLLQT 99 (119)
T ss_dssp EEEEESSH----HHHHHHHHHHHHHHHH
T ss_pred EEEEeCCH----HHHHHHHHHHHHHhhc
Confidence 56666542 3556777777777653
No 24
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=23.85 E-value=29 Score=27.16 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q 029341 167 PNNPKFALGMQALLDLIFAVEGSV 190 (195)
Q Consensus 167 tyn~~fp~~l~~~ld~~~~~~~~~ 190 (195)
.||..+|..|...+|.++..||.+
T Consensus 83 ~y~~~~pa~LK~~iD~v~~~g~~~ 106 (196)
T 3lcm_A 83 IWWSGMPAILKGFIDRVFVADFAY 106 (196)
T ss_dssp CBTTBCCHHHHHHHHHHSCBTTTE
T ss_pred hhhccccHHHHHHHHHHccCCcce
Confidence 799999999999999999887644
No 25
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.20 E-value=51 Score=23.96 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCCCCCc--cCceEEEEEcccc-----cEEEEcccCCHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVPTG-----VIAQAAEDRSQHKNRASALSRLRTLLAL 129 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~PtG-----i~v~~~~~RSq~~Nk~~Al~rL~~~l~~ 129 (195)
|+||.++++ .+|.|+|.-.+.+ -+|+.... ..+-+.|.+.+.+++..
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~---~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQS 80 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS---HHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHhc
Confidence 688888884 3556666654322 13344443 45667787777776643
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=22.48 E-value=64 Score=22.08 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCCCCCCc--cCceEEEEEccc-----c---cEEEEcccCCHHHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVPT-----G---VIAQAAEDRSQHKNRASALSRLRTLLALKV 131 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~Pt-----G---i~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~ 131 (195)
|+||.+++. -.|.++|.-.+. | -.|+.... ..+-..|...+.+++....
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccc
Confidence 788888873 445566654331 2 24444443 4577889998888876543
No 27
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.43 E-value=34 Score=27.00 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=20.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q 029341 167 PNNPKFALGMQALLDLIFAVEGS 189 (195)
Q Consensus 167 tyn~~fp~~l~~~ld~~~~~~~~ 189 (195)
.||..+|..|...+|.++..+|-
T Consensus 80 ~y~~s~pa~LK~~iDrv~~~g~~ 102 (204)
T 2amj_A 80 GWWMGAPWTVKKYIDDVFTEGHG 102 (204)
T ss_dssp CBTTBCCHHHHHHHHHHHHHTBT
T ss_pred ccccCCCHHHHHHHHHHhhcCcc
Confidence 69999999999999999887764
No 28
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=22.07 E-value=34 Score=22.72 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCCCCCCCc--cCceEEEEEccc-----c---cEEEEcccCCHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVPT-----G---VIAQAAEDRSQHKNRASALSRLRTLL 127 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~Pt-----G---i~v~~~~~RSq~~Nk~~Al~rL~~~l 127 (195)
|+||.+++. -.|.++|.-.+. | -.|+.... ..+-..|...+.+++
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRV 73 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHH
Confidence 788988883 445666654332 1 23334443 346677777776654
No 29
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.60 E-value=53 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=13.7
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHHHHH
Q 029341 102 VIAQAAEDRSQHKNRASALSRLRTLLA 128 (195)
Q Consensus 102 i~v~~~~~RSq~~Nk~~Al~rL~~~l~ 128 (195)
+.|++.+ ..+-+.|++.+..+|.
T Consensus 76 V~I~a~~----~e~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 76 ALVTANT----MENVKKAVEQIRNILK 98 (131)
T ss_dssp EEEEESS----HHHHHHHHHHHHHHHT
T ss_pred EEEEECC----HHHHHHHHHHHHHHHh
Confidence 5666654 2455677776666653
No 30
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=21.11 E-value=33 Score=25.89 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCCCCCCCc--cCceEEEEEccccc-------EEEEcccCCHHHHHHHHHHHHHHHHHHH
Q 029341 80 GPGGQHRNK--RESAVRLKHVPTGV-------IAQAAEDRSQHKNRASALSRLRTLLALK 130 (195)
Q Consensus 80 GpGGQ~VNk--~~taVrl~h~PtGi-------~v~~~~~RSq~~Nk~~Al~rL~~~l~~~ 130 (195)
|+||.+++. ..|.++|...+.+. .|+...+ ..+-+.|...+..+|...
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 799999985 45778876543331 4555553 345677888777777653
Done!