RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029341
         (195 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score = 58.0 bits (140), Expect = 5e-12
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 52  SSSSSRNYLELTDDEL-FRECEMDAYKSPGPGGQHRNKRESAVRLKH------------- 97
           SS SS  + +     +      +   +S GPGGQ+ NK  S   ++              
Sbjct: 2   SSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVR 61

Query: 98  ------------VPTGVIAQAAEDRSQHKNRASALSRLRTLLA 128
                           ++  +   R Q +N A  L ++R ++A
Sbjct: 62  QKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIA 104


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 35  LSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELF----RECEMDAYKSPGPGGQHRNKRE 90
                 +  +      +S SS+  Y E+ DD        +  +D Y++ G GGQH N+ E
Sbjct: 196 HRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTE 255

Query: 91  SAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
           SAVR+ H+PTG++ Q   DRSQHKN+  A+ +++  L
Sbjct: 256 SAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKL 292


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 69  RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLA 128
            + +++ +++ G GGQ+ NK ESAVR+ H+PTG++     +RSQ++N+ +AL  LR  L 
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLY 255

Query: 129 LKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQI 165
              +     +              KS I + E   +I
Sbjct: 256 QLQKEQKEREISQ---------KRKSQIGTGERSEKI 283


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 26/58 (44%), Positives = 41/58 (70%)

Query: 70  ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
           +  +D ++S G GGQH N  +SA+R+ H+PTG++ +  ++RSQHKN+A ALS L   +
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARI 268


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
           1 (Tip47), C-terminal domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 226

 Score = 29.8 bits (67), Expect = 0.16
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 58  NYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAE---DRSQH- 113
           N L LT+ EL                Q R ++   VRL  +   +   A E    + Q+ 
Sbjct: 1   NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYEHSLGKLQNA 60

Query: 114 KNRAS-ALSRLRTLLAL--KVRSSVNLDAYSPPPKLLQI 149
           + +A   L +L ++L L   V+  V+        KL Q+
Sbjct: 61  RQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM 99


>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human
           herpesvirus 1 [TaxId: 10298]}
          Length = 177

 Score = 28.3 bits (63), Expect = 0.51
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 30  YQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRECEMDAYKSPGPG 82
           Y P    C    +  C++S+ +S  + R+Y   +       C  +A+  P PG
Sbjct: 65  YHPQLPECLSPADAPCAASTWTSRLAVRSYAGCSRTNPPPRCSAEAHMEPVPG 117


>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 117

 Score = 23.9 bits (51), Expect = 9.8
 Identities = 3/42 (7%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 24 YKHRGNYQPLFLSCNYSTNDNCS--SSSSSSSSSSRNYLELT 63
           +   +      +  ++  +          S + + + + LT
Sbjct: 37 LRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLT 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,487
Number of extensions: 26326
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)