BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029343
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3A825|NUBCD_PELCD NADH-quinone oxidoreductase subunit B/C/D OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoBCD PE=3
           SV=1
          Length = 794

 Score = 33.9 bits (76), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 69  SKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREA 124
           S+ P    T +  L S  R  YL+ +AP    R  +PS++G+W A    N   REA
Sbjct: 288 SQRPAHDLTMVYHLLSFERAGYLRVKAPLRNDRAEVPSITGLWPA---ANWYEREA 340


>sp|Q28G25|BBS4_XENTR Bardet-Biedl syndrome 4 protein homolog OS=Xenopus tropicalis
           GN=bbs4 PE=2 SV=1
          Length = 516

 Score = 32.0 bits (71), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 47  TQHVLKPTINPPLYSFHRSL-LTSKAPLSVQTHINSL-FSTPRGHYLQNRAPTFTRRLFI 104
           T  VL PT +  L    RSL L  K   +V+ +  +   +        N    +   LF+
Sbjct: 89  TCAVLNPTSSDNLKQVARSLFLLGKHKAAVEVYNEAARLNQKDWEICHNLGVCY---LFL 145

Query: 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
             +S   + LT      R+ + AI  G +  ++GD+ G++  F +A++L P 
Sbjct: 146 KDLSKSKEQLTLALQLHRQDLSAITLGKIQLQEGDIDGAIQTFTQALQLSPE 197


>sp|Q86UG4|SO6A1_HUMAN Solute carrier organic anion transporter family member 6A1 OS=Homo
           sapiens GN=SLCO6A1 PE=2 SV=2
          Length = 719

 Score = 30.8 bits (68), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 132 MLLFRQGDVVG----SVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKGLK 187
           +LL  QG V G    S+ +F K  +L   +K++ + +Y  +  +   F  FY   KK + 
Sbjct: 114 ILLICQGVVFGLIDVSIGDFQKEYQLKTIEKLALEKSYDISSGLVAIFIAFYGDRKKVIW 173

Query: 188 KVQSSF 193
            V SSF
Sbjct: 174 FVASSF 179


>sp|P49602|CP51_USTMA Lanosterol 14-alpha demethylase OS=Ustilago maydis (strain 521 /
           FGSC 9021) GN=ERG11 PE=3 SV=1
          Length = 561

 Score = 30.4 bits (67), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 40  QFTSMALTQHVLKPTI--NPPLYSFHRSLLTSKA-------PLSVQTHINSLFSTPRGHY 90
           Q TS+ L   V+K T+  +PPL+S  R + +  A       P S ++  ++ +  P+GHY
Sbjct: 374 QKTSVPLLDAVVKETLRLHPPLHSIMRYVKSDLAVPPTLSSPTSTKSEPDAHYVIPKGHY 433

Query: 91  L 91
           +
Sbjct: 434 I 434


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,111,636
Number of Sequences: 539616
Number of extensions: 2719048
Number of successful extensions: 6792
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6787
Number of HSP's gapped (non-prelim): 8
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)