Query 029343
Match_columns 194
No_of_seqs 32 out of 34
Neff 1.6
Searched_HMMs 46136
Date Fri Mar 29 11:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00515 TPR_1: Tetratricopept 97.8 2.8E-05 6.1E-10 44.7 3.0 33 124-156 1-33 (34)
2 PF13414 TPR_11: TPR repeat; P 97.6 6.6E-05 1.4E-09 47.7 3.0 36 120-155 33-69 (69)
3 PF13414 TPR_11: TPR repeat; P 97.2 0.00032 7E-09 44.5 2.8 36 123-158 2-37 (69)
4 PF07719 TPR_2: Tetratricopept 97.2 0.00048 1E-08 38.8 3.0 33 124-156 1-33 (34)
5 PF13432 TPR_16: Tetratricopep 97.2 0.00041 8.9E-09 43.9 2.9 47 108-156 17-63 (65)
6 PF13371 TPR_9: Tetratricopept 97.1 0.00055 1.2E-08 43.7 2.7 45 110-156 17-61 (73)
7 PF13181 TPR_8: Tetratricopept 96.8 0.0012 2.5E-08 37.6 2.3 33 124-156 1-33 (34)
8 smart00028 TPR Tetratricopepti 96.6 0.0025 5.5E-08 31.6 2.7 33 124-156 1-33 (34)
9 KOG0547 Translocase of outer m 96.1 0.003 6.5E-08 60.7 1.9 40 118-157 388-427 (606)
10 PRK15359 type III secretion sy 95.9 0.0081 1.8E-07 44.8 3.1 40 118-157 86-125 (144)
11 PRK11189 lipoprotein NlpI; Pro 95.7 0.011 2.4E-07 48.6 3.3 40 118-157 92-131 (296)
12 PRK15359 type III secretion sy 95.0 0.02 4.3E-07 42.7 2.7 46 110-157 46-91 (144)
13 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.029 6.2E-07 52.4 3.7 41 118-158 69-109 (453)
14 PLN03088 SGT1, suppressor of 93.9 0.057 1.2E-06 46.3 3.3 40 118-157 64-103 (356)
15 PF13428 TPR_14: Tetratricopep 93.7 0.078 1.7E-06 32.6 2.8 34 124-157 1-34 (44)
16 PRK11189 lipoprotein NlpI; Pro 93.6 0.07 1.5E-06 43.9 3.3 40 118-157 126-165 (296)
17 PF13174 TPR_6: Tetratricopept 93.2 0.099 2.1E-06 28.9 2.5 31 126-156 2-32 (33)
18 KOG0543 FKBP-type peptidyl-pro 93.2 0.066 1.4E-06 49.5 2.7 51 107-159 276-326 (397)
19 PLN03088 SGT1, suppressor of 93.1 0.09 2E-06 45.1 3.2 40 118-157 30-69 (356)
20 PF13432 TPR_16: Tetratricopep 92.9 0.076 1.6E-06 33.5 1.9 28 129-156 2-29 (65)
21 TIGR02521 type_IV_pilW type IV 92.3 0.18 3.9E-06 35.3 3.3 35 122-156 29-63 (234)
22 TIGR02552 LcrH_SycD type III s 92.1 0.11 2.3E-06 36.0 2.0 37 120-156 47-83 (135)
23 TIGR00990 3a0801s09 mitochondr 91.8 0.16 3.6E-06 45.2 3.3 40 118-157 393-432 (615)
24 PRK10370 formate-dependent nit 91.6 0.19 4E-06 39.8 3.0 38 119-156 139-176 (198)
25 cd00189 TPR Tetratricopeptide 91.5 0.27 5.8E-06 28.3 2.9 35 121-155 65-99 (100)
26 KOG0547 Translocase of outer m 91.3 0.15 3.3E-06 49.5 2.7 42 118-159 354-395 (606)
27 cd00189 TPR Tetratricopeptide 91.3 0.31 6.8E-06 28.0 3.1 41 118-158 28-68 (100)
28 TIGR02552 LcrH_SycD type III s 90.9 0.22 4.8E-06 34.5 2.6 48 108-157 71-118 (135)
29 PRK12370 invasion protein regu 90.9 0.24 5.2E-06 44.4 3.4 40 118-157 366-405 (553)
30 TIGR02795 tol_pal_ybgF tol-pal 90.2 0.33 7.1E-06 32.0 2.8 39 120-158 32-73 (119)
31 TIGR00990 3a0801s09 mitochondr 89.8 0.36 7.7E-06 43.1 3.5 38 120-157 327-364 (615)
32 TIGR02521 type_IV_pilW type IV 89.8 0.43 9.3E-06 33.3 3.2 38 120-157 61-98 (234)
33 PF14559 TPR_19: Tetratricopep 88.8 0.38 8.2E-06 30.1 2.2 39 119-157 20-58 (68)
34 PRK02603 photosystem I assembl 88.1 0.51 1.1E-05 35.4 2.8 38 118-155 29-66 (172)
35 PRK10370 formate-dependent nit 88.1 0.57 1.2E-05 37.1 3.3 38 119-156 68-105 (198)
36 PRK12370 invasion protein regu 87.9 0.52 1.1E-05 42.3 3.3 40 118-157 332-371 (553)
37 PRK11906 transcriptional regul 87.5 0.52 1.1E-05 44.3 3.1 40 119-158 367-406 (458)
38 KOG0553 TPR repeat-containing 86.0 0.55 1.2E-05 42.3 2.4 41 118-158 143-183 (304)
39 PRK09782 bacteriophage N4 rece 85.8 0.75 1.6E-05 45.8 3.4 40 118-157 671-710 (987)
40 TIGR02795 tol_pal_ybgF tol-pal 85.4 1.2 2.5E-05 29.3 3.2 35 123-157 75-109 (119)
41 TIGR03302 OM_YfiO outer membra 85.2 1 2.3E-05 34.2 3.2 48 109-158 54-104 (235)
42 PF13429 TPR_15: Tetratricopep 85.1 0.81 1.8E-05 36.2 2.7 38 120-157 142-179 (280)
43 PRK15363 pathogenicity island 84.6 0.9 2E-05 37.1 2.8 37 118-154 97-133 (157)
44 CHL00033 ycf3 photosystem I as 83.9 1.2 2.7E-05 32.9 3.1 32 123-154 34-65 (168)
45 COG3063 PilF Tfp pilus assembl 82.1 1.2 2.6E-05 39.5 2.7 36 122-157 33-68 (250)
46 PRK11906 transcriptional regul 81.6 1.6 3.4E-05 41.2 3.5 39 120-158 334-372 (458)
47 TIGR02917 PEP_TPR_lipo putativ 80.7 1.8 3.9E-05 36.6 3.2 38 120-157 189-226 (899)
48 TIGR03302 OM_YfiO outer membra 80.2 2 4.3E-05 32.7 3.0 36 121-156 30-65 (235)
49 KOG0624 dsRNA-activated protei 79.9 1.3 2.8E-05 42.3 2.4 37 121-157 103-139 (504)
50 PRK02603 photosystem I assembl 79.8 2.3 5.1E-05 31.8 3.3 35 123-157 71-105 (172)
51 PLN02789 farnesyltranstransfer 79.8 1.8 4E-05 37.4 3.1 46 110-157 130-175 (320)
52 PF13424 TPR_12: Tetratricopep 79.7 2.3 4.9E-05 27.5 2.8 30 124-153 5-34 (78)
53 TIGR02917 PEP_TPR_lipo putativ 78.1 2.5 5.5E-05 35.8 3.3 39 118-156 50-88 (899)
54 PRK15174 Vi polysaccharide exp 77.9 2.2 4.8E-05 39.5 3.2 41 118-158 104-144 (656)
55 PF13371 TPR_9: Tetratricopept 77.5 1.6 3.4E-05 27.7 1.5 24 133-156 4-27 (73)
56 CHL00033 ycf3 photosystem I as 77.0 3.2 6.9E-05 30.7 3.3 35 123-157 71-105 (168)
57 PF13431 TPR_17: Tetratricopep 75.4 2 4.3E-05 26.0 1.5 26 119-144 8-33 (34)
58 PRK11447 cellulose synthase su 75.0 2.9 6.3E-05 40.9 3.3 42 118-159 297-338 (1157)
59 PF13424 TPR_12: Tetratricopep 74.4 2.1 4.5E-05 27.7 1.5 34 121-154 43-76 (78)
60 PRK10049 pgaA outer membrane p 73.9 3.3 7.1E-05 38.8 3.2 39 119-157 388-426 (765)
61 PF14561 TPR_20: Tetratricopep 73.6 4.6 0.0001 29.2 3.3 39 119-157 17-55 (90)
62 PRK10866 outer membrane biogen 72.9 4 8.7E-05 33.6 3.2 35 124-158 69-103 (243)
63 KOG4555 TPR repeat-containing 72.6 2.8 6.1E-05 35.6 2.2 38 120-157 73-110 (175)
64 PRK10153 DNA-binding transcrip 72.0 4 8.6E-05 37.8 3.3 35 124-158 453-487 (517)
65 PF09976 TPR_21: Tetratricopep 70.7 4.6 0.0001 29.5 2.8 34 118-151 112-145 (145)
66 PRK15174 Vi polysaccharide exp 70.6 4.5 9.7E-05 37.6 3.3 38 119-156 279-316 (656)
67 PF13525 YfiO: Outer membrane 70.2 5.5 0.00012 31.2 3.3 40 119-158 37-76 (203)
68 PF14559 TPR_19: Tetratricopep 68.2 3.2 7E-05 25.9 1.3 24 134-157 1-24 (68)
69 COG4783 Putative Zn-dependent 68.2 4.3 9.3E-05 38.8 2.7 44 112-157 330-373 (484)
70 PRK10153 DNA-binding transcrip 68.1 4.1 8.8E-05 37.7 2.4 39 120-158 416-454 (517)
71 PRK11447 cellulose synthase su 67.1 5.6 0.00012 39.0 3.3 39 119-157 380-418 (1157)
72 cd05804 StaR_like StaR_like; a 64.9 6.8 0.00015 31.2 2.9 39 118-156 142-180 (355)
73 cd05804 StaR_like StaR_like; a 64.7 8.9 0.00019 30.6 3.5 39 119-157 109-147 (355)
74 PF13374 TPR_10: Tetratricopep 64.3 9.6 0.00021 21.4 2.7 32 125-156 3-34 (42)
75 KOG0545 Aryl-hydrocarbon recep 63.6 5.2 0.00011 36.8 2.2 51 107-159 249-299 (329)
76 PRK14574 hmsH outer membrane p 63.5 7.1 0.00015 38.4 3.2 41 118-158 28-68 (822)
77 KOG0376 Serine-threonine phosp 62.7 2.5 5.5E-05 40.2 0.1 37 121-157 35-71 (476)
78 PRK10803 tol-pal system protei 62.6 9.1 0.0002 32.4 3.4 34 124-157 180-213 (263)
79 KOG0553 TPR repeat-containing 62.5 5.8 0.00013 36.0 2.3 53 107-161 100-153 (304)
80 PRK09782 bacteriophage N4 rece 61.3 8.1 0.00018 38.7 3.3 33 124-156 609-641 (987)
81 PF13525 YfiO: Outer membrane 60.8 8.9 0.00019 30.0 2.8 34 123-156 4-37 (203)
82 PRK11788 tetratricopeptide rep 60.8 10 0.00022 30.6 3.2 34 120-153 65-98 (389)
83 PLN02789 farnesyltranstransfer 60.4 9.1 0.0002 33.2 3.0 39 118-156 65-104 (320)
84 KOG1126 DNA-binding cell divis 60.2 7.8 0.00017 38.3 2.9 39 118-156 517-555 (638)
85 PF07721 TPR_4: Tetratricopept 59.5 8.3 0.00018 21.8 1.8 25 124-148 1-25 (26)
86 KOG0624 dsRNA-activated protei 59.0 9.6 0.00021 36.6 3.2 39 119-157 67-105 (504)
87 PF12895 Apc3: Anaphase-promot 58.3 5.9 0.00013 26.3 1.2 34 123-157 24-57 (84)
88 COG4785 NlpI Lipoprotein NlpI, 58.2 10 0.00022 34.5 3.1 52 106-157 76-132 (297)
89 KOG4648 Uncharacterized conser 58.2 8.3 0.00018 37.1 2.6 48 107-156 150-197 (536)
90 PRK11788 tetratricopeptide rep 58.2 11 0.00024 30.4 3.0 37 121-157 211-247 (389)
91 PRK10049 pgaA outer membrane p 57.5 8 0.00017 36.3 2.4 39 118-157 111-149 (765)
92 PF12688 TPR_5: Tetratrico pep 54.9 16 0.00035 27.8 3.3 42 115-156 29-70 (120)
93 PLN03098 LPA1 LOW PSII ACCUMUL 54.7 10 0.00022 35.9 2.6 36 118-153 103-141 (453)
94 PRK10747 putative protoheme IX 54.6 11 0.00023 32.5 2.5 42 118-159 322-363 (398)
95 PF13176 TPR_7: Tetratricopept 52.9 11 0.00023 22.4 1.6 29 127-155 2-30 (36)
96 PRK15179 Vi polysaccharide bio 52.0 9.1 0.0002 37.0 1.8 50 105-156 103-152 (694)
97 TIGR00293 prefoldin, archaeal 51.8 14 0.00031 27.0 2.5 41 138-178 23-81 (126)
98 PF09976 TPR_21: Tetratricopep 51.5 22 0.00048 25.9 3.4 33 122-154 46-78 (145)
99 PRK10866 outer membrane biogen 51.1 16 0.00036 30.0 3.0 35 122-156 30-64 (243)
100 PF12108 SF3a60_bindingd: Spli 51.1 6.9 0.00015 24.5 0.6 17 168-184 2-18 (28)
101 PF13512 TPR_18: Tetratricopep 48.4 22 0.00047 28.7 3.2 38 121-158 44-81 (142)
102 PRK15363 pathogenicity island 47.5 21 0.00046 29.2 3.1 38 119-156 64-101 (157)
103 KOG4626 O-linked N-acetylgluco 46.1 13 0.00027 38.1 1.9 47 109-157 409-455 (966)
104 PF06552 TOM20_plant: Plant sp 45.3 19 0.00042 30.7 2.6 39 119-157 20-68 (186)
105 COG5010 TadD Flp pilus assembl 45.0 23 0.00049 31.5 3.1 40 119-158 129-168 (257)
106 PF13512 TPR_18: Tetratricopep 44.8 24 0.00053 28.4 3.0 36 121-156 81-131 (142)
107 KOG0548 Molecular co-chaperone 44.4 20 0.00044 34.9 2.9 35 121-155 389-423 (539)
108 COG4235 Cytochrome c biogenesi 43.3 26 0.00056 31.4 3.2 39 119-157 151-189 (287)
109 PRK10803 tol-pal system protei 42.4 30 0.00065 29.3 3.3 39 119-157 212-250 (263)
110 KOG4648 Uncharacterized conser 41.5 18 0.00039 34.9 2.0 30 126-155 99-128 (536)
111 KOG0550 Molecular chaperone (D 41.5 20 0.00043 34.6 2.3 38 119-156 316-353 (486)
112 PRK15179 Vi polysaccharide bio 40.3 30 0.00065 33.5 3.4 39 118-156 148-186 (694)
113 PF14863 Alkyl_sulf_dimr: Alky 35.8 24 0.00052 28.0 1.7 42 111-158 63-104 (141)
114 PF12895 Apc3: Anaphase-promot 35.7 30 0.00065 22.8 1.9 29 122-150 56-84 (84)
115 KOG4234 TPR repeat-containing 35.4 37 0.00081 30.7 2.9 49 119-167 163-211 (271)
116 COG0457 NrfG FOG: TPR repeat [ 33.4 61 0.0013 20.3 2.9 34 123-156 201-234 (291)
117 TIGR00540 hemY_coli hemY prote 33.3 47 0.001 28.6 3.1 41 119-159 328-372 (409)
118 KOG0548 Molecular co-chaperone 31.6 39 0.00084 33.0 2.6 40 120-159 66-105 (539)
119 KOG4162 Predicted calmodulin-b 29.9 52 0.0011 33.6 3.2 38 119-156 749-786 (799)
120 PRK15331 chaperone protein Sic 27.8 64 0.0014 26.8 2.9 53 107-159 13-72 (165)
121 PF13429 TPR_15: Tetratricopep 27.1 35 0.00075 27.1 1.2 36 121-156 211-246 (280)
122 cd00584 Prefoldin_alpha Prefol 25.7 66 0.0014 23.6 2.4 41 138-178 23-82 (129)
123 PF12862 Apc5: Anaphase-promot 25.4 84 0.0018 22.0 2.8 33 123-155 40-72 (94)
124 PF10516 SHNi-TPR: SHNi-TPR; 24.5 61 0.0013 20.8 1.8 31 127-157 4-34 (38)
125 KOG0422 Ubiquitin-protein liga 24.2 50 0.0011 27.8 1.7 20 153-172 39-58 (153)
126 TIGR00540 hemY_coli hemY prote 24.1 84 0.0018 27.0 3.1 49 104-156 68-116 (409)
127 KOG1125 TPR repeat-containing 23.9 52 0.0011 32.4 2.0 28 129-156 290-317 (579)
128 PF10300 DUF3808: Protein of u 22.3 63 0.0014 29.3 2.1 39 121-159 264-302 (468)
129 PRK03947 prefoldin subunit alp 22.0 86 0.0019 23.5 2.5 40 138-177 30-88 (140)
130 PF11808 DUF3329: Domain of un 21.7 34 0.00074 24.7 0.3 14 102-115 61-74 (90)
131 PF14853 Fis1_TPR_C: Fis1 C-te 20.9 81 0.0018 21.3 1.9 29 131-159 8-36 (53)
132 cd02758 MopB_Tetrathionate-Ra 20.7 1.6E+02 0.0034 28.6 4.5 64 99-167 81-150 (735)
133 KOG4056 Translocase of outer m 20.5 89 0.0019 26.1 2.4 28 128-155 85-112 (143)
134 PF13812 PPR_3: Pentatricopept 20.4 94 0.002 16.8 1.8 20 134-153 11-30 (34)
No 1
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.77 E-value=2.8e-05 Score=44.72 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++|+.++.+|+.+.+++.|.+|+++||.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 578899999999999999999999999999996
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=6.6e-05 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=24.8
Q ss_pred CchhhHHHHHHHHHhhhhc-cccccHHHHHHHhhcCc
Q 029343 120 NSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDP 155 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqg-DVeGSIaDFDkAIeLDP 155 (194)
+|.++.++..+|..++.+| +.++++++|++|+++||
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566667777777777776 57777777777777766
No 3
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.00032 Score=44.52 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+|..+...|+.++.+||.+.+++.|++|+++||..-
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 688899999999999999999999999999999753
No 4
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.17 E-value=0.00048 Score=38.78 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778899999999999999999999999995
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.16 E-value=0.00041 Score=43.92 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=41.1
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 108 sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...++.++ ...|.++.+....|..++++|+.+++++.|++|++++|.
T Consensus 17 ~~~~~~~l--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 17 IAAFEQAL--KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHH--CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34566677 677999999999999999999999999999999999995
No 6
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.00055 Score=43.74 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=39.7
Q ss_pred ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.++..+ .-+|.++.++..+|+.++.+|+.++++++|+++++++|+
T Consensus 17 ~~~~~l--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 17 VLERAL--ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHH--HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 445555 567889999999999999999999999999999999994
No 7
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.78 E-value=0.0012 Score=37.62 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++...|+.+..+||.+.|++.|.+|++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467889999999999999999999999999985
No 8
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.62 E-value=0.0025 Score=31.65 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++.+.|+.++.+++.+.++..|+++++++|.
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 356788999999999999999999999999985
No 9
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.003 Score=60.74 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=36.4
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.||..|-.||=.+|..+++++.++|||+|++|||..
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 4578999999999999999999999999999999999973
No 10
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.87 E-value=0.0081 Score=44.80 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++.+.|..++++|+.+++++.|++|++++|..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4568899999999999999999999999999999999875
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.66 E-value=0.011 Score=48.57 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++..+|..+..+||.++++++||+|+++||..
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 131 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4567777777777888888888888888888888877764
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.04 E-value=0.02 Score=42.73 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=40.2
Q ss_pred ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.++..+ ..+|.++.++...|+.+.++|+.+++++.|++|+++||.-
T Consensus 46 ~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 46 DFSWLV--MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHH--HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344455 6779999999999999999999999999999999999963
No 13
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.82 E-value=0.029 Score=52.41 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=38.4
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..+|++|.++...|+.+|.+|+++++|+.|++|+++||..-
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 46799999999999999999999999999999999999954
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.89 E-value=0.057 Score=46.27 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=36.0
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++.++|..++.+|+.+++++.|++|+++||.-
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 4567889999999999999999999999999999999874
No 15
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.72 E-value=0.078 Score=32.59 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.++...|-.+.++|+.+++++.|.++++++|.-
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567778899999999999999999999999974
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.64 E-value=0.07 Score=43.88 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++..+|..++.+|+.++++++|++|++++|.-
T Consensus 126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4578899999999999999999999999999999999975
No 17
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.25 E-value=0.099 Score=28.86 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 126 aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
++.+.|+.++++||.+.+++.|+++++..|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5678899999999999999999999998884
No 18
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.066 Score=49.49 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=43.8
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+-..+|.+. .-.++|..|+-|||+.+-..||.+.++.||-+|++++|.=|+
T Consensus 276 Ai~~c~kvL--e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 276 AIESCNKVL--ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHH--hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 344566666 567999999999999999999999999999999999997653
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.10 E-value=0.09 Score=45.06 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=37.0
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++..+|..+..+|+.+++++++++|+++||..
T Consensus 30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4678899999999999999999999999999999999953
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.95 E-value=0.076 Score=33.48 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=26.3
Q ss_pred HHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 129 RRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 129 RRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..|+.++.+||.+++++.|+++++.+|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 29 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD 29 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999986
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.34 E-value=0.18 Score=35.25 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+.++...|..++.+|+.+.+++.|+++++.+|.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 63 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD 63 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 33444555555555555555555555555555443
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.12 E-value=0.11 Score=36.03 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=20.3
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+|.++.++.+.|-.++.+|+.+.+++.|+++++++|.
T Consensus 47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455555555555555555555555555555555544
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.80 E-value=0.16 Score=45.24 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=34.1
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++..+|..++.+||.++++++|++|++++|..
T Consensus 393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 4567888888899999999999999999999999998853
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.58 E-value=0.19 Score=39.85 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-.|.|+.++-..|+.+|.+||.+++|+.++++++++|-
T Consensus 139 ~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 36888888888899999999999999999999999885
No 25
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.46 E-value=0.27 Score=28.27 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=24.0
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++..+...|..++.+|+.+.+++.|+++++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 44445666667777777777777777777777666
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=0.15 Score=49.48 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+.-+.++++||+|+..+-.++|-+.++.+||+|+.|||.-.+
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc
Confidence 455677888999999999999999999999999999987543
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.27 E-value=0.31 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
...+.++......|..+..+++.+.+++.|+++++.+|...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 34456667788899999999999999999999999988754
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.95 E-value=0.22 Score=34.48 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 108 sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...|+..+ ..+|.++..+...|..+..+||.+.+++.|++|+++||.-
T Consensus 71 ~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 71 IDAYALAA--ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHH--hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 33455555 4568899999999999999999999999999999999843
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=90.86 E-value=0.24 Score=44.38 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|+++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus 366 ~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 366 LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4678888899999999999999999999999999999984
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.24 E-value=0.33 Score=31.95 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=27.0
Q ss_pred Cchh---hHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 120 NSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 120 ~p~e---a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.|.+ +.++...|-.+++.|+.+++++.|+++++++|...
T Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 32 YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 4555 34566677777777777777777777777777543
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.80 E-value=0.36 Score=43.14 Aligned_cols=38 Identities=34% Similarity=0.557 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.++.++..+|..++.+||.++++++|++|+++||+.
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 57777888888999999999999999999999998864
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.78 E-value=0.43 Score=33.34 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=28.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+||.+.+++.|++|++++|..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45666777777888888888888888888888877653
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=88.83 E-value=0.38 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.+.+.-+-.++++|+.+.+.+-++++++.+|.-
T Consensus 20 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 20 RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 458889999999999999999999999999999999973
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.09 E-value=0.51 Score=35.36 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=22.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++.++.++.+.|..+.+.||.+++++.|.+|++++|
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 66 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE 66 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666666666666665544
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.08 E-value=0.57 Score=37.09 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.|+.++..-|..+...|+.+.+++.|++|++++|+
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~ 105 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE 105 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45666666666666666666666666666666666664
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=87.91 E-value=0.52 Score=42.26 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..+..+|+.+++++.|++|++++|.-
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4578899999999999999999999999999999999974
No 37
>PRK11906 transcriptional regulator; Provisional
Probab=87.50 E-value=0.52 Score=44.30 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=28.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
=+|+.|.++.-+|+.+|-.|+.++.++.+|+|++|+|+-.
T Consensus 367 L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 367 HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 3566677777777777777777777777777777777643
No 38
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.04 E-value=0.55 Score=42.34 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=30.0
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.-.|.-..+|.|-|+.+..+|+.++.|+.|-+|+++||.-.
T Consensus 143 ~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 143 SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 34455556667778888888888888888888888888765
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=85.77 E-value=0.75 Score=45.79 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=36.1
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.+....|+.++.+||.+++++.|++|++++|+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4568888999999999999999999999999999999965
No 40
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.42 E-value=1.2 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.+....|..+..+|+.+.++..++++++..|.-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 46677778888888888888888888888888763
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=85.19 E-value=1 Score=34.23 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.3
Q ss_pred cccccccCCCCCchhh---HHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 109 GIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 109 giWd~~~GG~n~p~ea---~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..++.++ ..+|.++ .++...|..++.+|+.+.+++.|+++++.+|.-.
T Consensus 54 ~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 54 KYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3445555 3444444 5778899999999999999999999999999644
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.07 E-value=0.81 Score=36.24 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=31.9
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
-+.++..+..+|+.+.++|+.+.+++.+.+|++++|.-
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 35788999999999999999999999999999999973
No 43
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.58 E-value=0.9 Score=37.06 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=33.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD 154 (194)
.-+++||..+--.|-.+|..||+++|.+.|+.||+.-
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999875
No 44
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=83.93 E-value=1.2 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD 154 (194)
.+..+...|+..+.+|+.+++++.|++|+++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 65 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE 65 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 34444555555555555555555555555553
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.07 E-value=1.2 Score=39.51 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+.+.|..||.++++||-+-.-+.+|+|++.||..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~ 68 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY 68 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 345677888999999999999999999999999963
No 46
>PRK11906 transcriptional regulator; Provisional
Probab=81.62 E-value=1.6 Score=41.22 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+.||.+....|....-.++.+.+++.||+|.+|+|..-
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence 456666666778888999999999999999999999863
No 47
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.73 E-value=1.8 Score=36.60 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=27.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+|.++.++...|..++.+||.+.+++.|.+|++++|.-
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 45666667777777777777777777777777777753
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=80.22 E-value=2 Score=32.71 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...+......|+.++.+|+.+..++.|+++++.+|.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~ 65 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF 65 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 567788999999999999999999999999999985
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=79.93 E-value=1.3 Score=42.27 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.=..|-++||-++.++|+.|.+++|||++++-+|..
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 3344567899999999999999999999999999943
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=79.81 E-value=2.3 Score=31.80 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.++...|..+++.|+.+.+++.+++|++++|..
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 46788899999999999999999999999999864
No 51
>PLN02789 farnesyltranstransferase
Probab=79.76 E-value=1.8 Score=37.42 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=40.5
Q ss_pred ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+..+ ..+|.|..+..-||..+...|+.++.|+.+|++|+.||+-
T Consensus 130 ~~~kal--~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 130 FTRKIL--SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHH--HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 344556 6779999999999999999999999999999999999985
No 52
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=79.65 E-value=2.3 Score=27.49 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
+..+-..|..++.+|+.+.+++.|.+|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556777899999999999999999999998
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=78.15 E-value=2.5 Score=35.76 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...|.+|.++...|..++++||.+.+++.|+++++.+|.
T Consensus 50 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 50 QKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 345778888888999999999999999999999988775
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=77.87 E-value=2.2 Score=39.51 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=35.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.-+|.++.++...|..+.++|+.+++++.+++|++++|...
T Consensus 104 ~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 104 AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45688888888889999999999999999999999998743
No 55
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=77.54 E-value=1.6 Score=27.68 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=22.3
Q ss_pred HhhhhccccccHHHHHHHhhcCcc
Q 029343 133 LLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 133 ~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+++++|.+.+++..|++++++|.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc
Confidence 368899999999999999999998
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.04 E-value=3.2 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.++...|+.+..+|+.+++++.|.+|++++|..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 45678889999999999999999999999998865
No 57
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.39 E-value=2 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCchhhHHHHHHHHHhhhhccccccH
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSV 144 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSI 144 (194)
.+|+|+.++...|..+..+||.++++
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57999999999999999999988765
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=75.04 E-value=2.9 Score=40.94 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=37.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
..+|.++.++...|..++++||.+++++.|.+|++++|....
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 457888889999999999999999999999999999997543
No 59
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=74.42 E-value=2.1 Score=27.66 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD 154 (194)
+.-+..+..-|..+-.+||.+.+++-|++|+++.
T Consensus 43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3347777888999999999999999999999864
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=73.95 E-value=3.3 Score=38.85 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.+....||.+-.+|+.+++++.+++|++++|.-
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 457778888888999999999999999999999999874
No 61
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.55 E-value=4.6 Score=29.18 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.|+.+...-+..+...|++|++++.+-.+++-|+..
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 578999999999999999999999999999999988654
No 62
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=72.91 E-value=4 Score=33.59 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+.+...-|..+|+++|.+.++..|+++++++|+-.
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 34446779999999999999999999999999864
No 63
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=72.61 E-value=2.8 Score=35.65 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=33.3
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
-|.+|++|--|.-.+=-|||+||.++|.++|++|.-.+
T Consensus 73 ~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 73 APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 37889999999888888999999999999999997543
No 64
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=72.00 E-value=4 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+.+|+..|..+..+|+.++.++.+.+|+.|||..-
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 45566667777777777777777777777777643
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=70.71 E-value=4.6 Score=29.50 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHh
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI 151 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAI 151 (194)
.+.+..|.+...+|..+.++||.++.++.|.+|+
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3456778888899999999999999999999986
No 66
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=70.63 E-value=4.5 Score=37.55 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-.|.++.++...|+.+..+|+.+++++.+++|++++|.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44666666666777777777777777777777777776
No 67
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.18 E-value=5.5 Score=31.19 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+++-.+.+....|...|++||.+.++..|++.++..|+-.
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4467778888999999999999999999999999999854
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=68.24 E-value=3.2 Score=25.87 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.5
Q ss_pred hhhhccccccHHHHHHHhhcCccc
Q 029343 134 LFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 134 lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
++.+||.+++++-|.+|++.+|.-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~ 24 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN 24 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999963
No 69
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=68.23 E-value=4.3 Score=38.84 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=40.5
Q ss_pred ccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 112 DALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 112 d~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
++++ .+.|+||-...-+|=.++.+|++.+.++-|++|+++||-.
T Consensus 330 ~~L~--~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 330 QPLI--AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 4466 6889999999999999999999999999999999999986
No 70
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=68.07 E-value=4.1 Score=37.70 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=33.9
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+.+|.++-..|+....+||.+++++.|++|++|+|.-.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~ 454 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWL 454 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 456677888889999999999999999999999998543
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=67.07 E-value=5.6 Score=39.04 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..+..+|+.+++++.|++|++++|..
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356778888888999999999999999999999999975
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=64.93 E-value=6.8 Score=31.24 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=31.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.-+|.++.++...|..+..+|+.+++++-++++++++|.
T Consensus 142 ~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 142 ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 345667777777888888999999999999999988875
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=64.73 E-value=8.9 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.+.++....-.|..+..+|+.+.+++.|+++++++|+.
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 446666666677889999999999999999999999997
No 74
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=64.27 E-value=9.6 Score=21.38 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 125 ~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+..-|+.+..+|+.+++++-+.+|++.--+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34556689999999999999999999886443
No 75
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=5.2 Score=36.80 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=44.3
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
|-.+++++. +--++|-.||-||+=..-.-=+-+++-+||-++++|||.+++
T Consensus 249 vleh~seiL--~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 249 VLEHCSEIL--RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHH--hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 455677777 778999999999998888888889999999999999998764
No 76
>PRK14574 hmsH outer membrane protein; Provisional
Probab=63.50 E-value=7.1 Score=38.43 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=35.7
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.-.|+.|...--.+|..|++||.++.++.|.++++.||.-.
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~ 68 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS 68 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch
Confidence 44566777777789999999999999999999999999964
No 77
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.74 E-value=2.5 Score=40.20 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|+.|.-+--|-...++.++.-|.+.|+++|||+||.+
T Consensus 35 pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 35 PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred CcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 4444444455578889999999999999999999763
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.65 E-value=9.1 Score=32.40 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|+++..-|-.+|.+||.+++++.|.++++.+|.-
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 5777788899999999999999999999888853
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.50 E-value=5.8 Score=35.96 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=46.2
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc-cccC
Q 029343 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KISG 161 (194)
Q Consensus 107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~-kpy~ 161 (194)
+-..|++-| .-.|.||..|--|--++-++|.-+..|+|=-+||++||.. |+||
T Consensus 100 Av~kY~~AI--~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 100 AVDKYTEAI--ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHH--hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence 446788888 8889999999999999999999999999999999999985 4444
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=61.35 E-value=8.1 Score=38.73 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++...|+.+.++|+.+++++.|++|+++||.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 555556666666666666666666666666654
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.84 E-value=8.9 Score=30.05 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
++.++-+.|+..|.+||-+++|+.|++++...|.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~ 37 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN 37 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 5677889999999999999999999999998886
No 82
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=60.81 E-value=10 Score=30.59 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=19.9
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
+|.++.++...|..++++|+++++++.|+++++.
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 98 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR 98 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC
Confidence 3455555555566666666666666666666553
No 83
>PLN02789 farnesyltranstransferase
Probab=60.35 E-value=9.1 Score=33.19 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=29.1
Q ss_pred CCCchhhHHHHHHHHHhhhhc-cccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqg-DVeGSIaDFDkAIeLDPR 156 (194)
.-+|.+..+..-||..+..+| +.++.++.+|+|++.+|.
T Consensus 65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk 104 (320)
T PLN02789 65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK 104 (320)
T ss_pred HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc
Confidence 346777777777777777777 567888888888887774
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.21 E-value=7.8 Score=38.26 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=34.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..||+|-+..+--|+.+++.|+.+.+++-||+|+-+||-
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 457888888888899999999999999999999999984
No 85
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.51 E-value=8.3 Score=21.84 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhhccccccHHHHH
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFD 148 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFD 148 (194)
|.+.+-.|..++.+||.++..+.++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4567778999999999999887765
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=58.97 E-value=9.6 Score=36.62 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.+=.++-||+-++..-|.-...|.||+++++|-|.+
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 346666677788888888888888888888888887765
No 87
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=58.29 E-value=5.9 Score=26.27 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|+..+...|..+|++|+.+.+++.+++ .+.+|+.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 566666789999999999999999999 7777654
No 88
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=58.20 E-value=10 Score=34.49 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=40.4
Q ss_pred cccccccccc----CC-CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 106 SVSGIWDALT----GG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 106 ~~sgiWd~~~----GG-~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
-.-|.|+.-- -. +.+|.-|..+-=-|.-+-..||.+++.+.||.++||||..
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3457776321 01 4567777777777999999999999999999999999975
No 89
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.20 E-value=8.3 Score=37.14 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+..-|++-+ +-+-+--.||-|||-.+|.+|.+++.-+|...|++|.|.
T Consensus 150 AE~DC~~Ai--aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 150 AEEDCEAAI--ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHhHHHHH--HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 334455544 334445567889999999999999999999999999986
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.16 E-value=11 Score=30.38 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++.++...|-.+.++|+.+++++.|+++++.+|..
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 4445555566677777777777777777777776653
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=57.51 E-value=8 Score=36.34 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...|.++. +...|+.+.++|+.+++++.+++|++++|.-
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34455555 5556666666666666666666666666654
No 92
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=54.92 E-value=16 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=35.4
Q ss_pred cCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 115 TGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 115 ~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-+|-+.+.-..++|..|-.+-..|+++++++-|+++++-.|.
T Consensus 29 ~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 29 AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345555666789999999999999999999999999987665
No 93
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=54.74 E-value=10 Score=35.91 Aligned_cols=36 Identities=6% Similarity=-0.084 Sum_probs=30.8
Q ss_pred CCCchhhH---HHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 118 NNNSREAV---VAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 118 ~n~p~ea~---aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
.-+|+++. ++.-+|..+=.+|+++++++++++|+++
T Consensus 103 eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 103 ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566664 4788899999999999999999999998
No 94
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=54.61 E-value=11 Score=32.47 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
...|+||....--|-...++++.+...+.|.++++.+|+...
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 356888888888999999999999999999999999998765
No 95
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.91 E-value=11 Score=22.40 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 127 aIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+..-|-.++++||.+.+|+-|-+|+++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44567889999999999999999766543
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=52.02 E-value=9.1 Score=37.00 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 105 p~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+-+.-.|+.+. .-.|.+..+.+-+++.+++++.+|+++++.+++++.||.
T Consensus 103 ~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 103 DEGLAVWRGIH--QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHHHHHH--hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 44445555555 555666666666666666666666666666666666664
No 97
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=51.77 E-value=14 Score=27.04 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=28.3
Q ss_pred ccccccHHHHHHHhhc---------CccccccCCcee---------EEEEEecceehhh
Q 029343 138 GDVVGSVAEFDKAIEL---------DPRQKISGKGAY---------RFTISIGTKFFTF 178 (194)
Q Consensus 138 gDVeGSIaDFDkAIeL---------DPR~kpy~~~~~---------~~~~~~~~~~~~~ 178 (194)
.+++.++++++.+++. ...+-|.|.|.| +..+.||+.+|--
T Consensus 23 ~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 23 AALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 3455556666555433 456779999999 5678999998853
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.53 E-value=22 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD 154 (194)
-...+....+-..+.+||.+++++.|+++++..
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 446677788999999999999999999999965
No 99
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=51.12 E-value=16 Score=30.04 Aligned_cols=35 Identities=6% Similarity=0.047 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.++...-..|+..+..||.+.+++.|.++++.+|.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~ 64 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF 64 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 35666778999999999999999999999999984
No 100
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=51.11 E-value=6.9 Score=24.51 Aligned_cols=17 Identities=53% Similarity=0.794 Sum_probs=10.6
Q ss_pred EEEecceehhhHHHHHH
Q 029343 168 TISIGTKFFTFYSRLKK 184 (194)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (194)
+||-|.-|-.||+|||+
T Consensus 2 ~is~~d~f~eFY~rlk~ 18 (28)
T PF12108_consen 2 AISGGDPFSEFYERLKE 18 (28)
T ss_dssp ---S--HHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHH
Confidence 46667789999999985
No 101
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=48.40 E-value=22 Score=28.70 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=32.8
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+-.+.+-+.-|=.+|.+++.+.+++.+|+-|+|.|.=.
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34456777789999999999999999999999999754
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=47.46 E-value=21 Score=29.16 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-.|.++.-+..-||.+=++|+.+++|+.|.+|+.|||.
T Consensus 64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34666666777799999999999999999999999874
No 103
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.10 E-value=13 Score=38.11 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=42.5
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+++.+ +..|.-|.++.-+|-.+=.+|||.|.|++..+||+.+|.+
T Consensus 409 ~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 409 MCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 4566667 7889999999999999999999999999999999999976
No 104
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.26 E-value=19 Score=30.65 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCchhhHHHHHHHHHhhhhc----------cccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQG----------DVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqg----------DVeGSIaDFDkAIeLDPR~ 157 (194)
.||.|+.+++|=|-.+-.+. -++++|+-|..|+.+||..
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 57999999999987764443 3578899999999999975
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=44.96 E-value=23 Score=31.47 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=33.9
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
-.|.|+.++--.|..+=+.|++++.-.++-+|++|+|+..
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 4577777777779999999999999999999999998754
No 106
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=44.78 E-value=24 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHHhhhhcc---------------ccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGD---------------VVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgD---------------VeGSIaDFDkAIeLDPR 156 (194)
+.-+-++-++||..|.+.+ +..+..+|.+.|.--|.
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 4445577899999999998 99999999999987775
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.41 E-value=20 Score=34.88 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
|.||.+|--|+.-+-+.|++...++|=+++|+|||
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 44444444444444444555444555444554444
No 108
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.26 E-value=26 Score=31.36 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.||+|+.-..--|=.+.++|+.+.++..|.+|++|+|.-
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n 189 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN 189 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence 344455545555666777888888888888888888764
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.37 E-value=30 Score=29.31 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+++..+.++.+-|..+..+||.+++++.|.++++..|.-
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 446678888888999999999999999999999998864
No 110
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.48 E-value=18 Score=34.95 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 126 aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
....+|=.+|+||+.++.|+-+-++|+++|
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P 128 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYP 128 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCC
Confidence 367899999999999999999999999999
No 111
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=20 Score=34.62 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-.+---.++.|||--+-..++.|++|+||.+|++++-.
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444567889999999999999999999999998765
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.34 E-value=30 Score=33.54 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=25.3
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...|.+|.+....||.+=+.|+-|++++-|++|++.+|.
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 344666666666666666666666666666666665554
No 113
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=35.77 E-value=24 Score=27.96 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=31.4
Q ss_pred cccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 111 Wd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+=++.|| +...+.+.=..+..||.+-+++--|.++..||.-+
T Consensus 63 ~v~l~GG------~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~ 104 (141)
T PF14863_consen 63 YVELAGG------ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE 104 (141)
T ss_dssp HHHHTTC------HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH
Confidence 3356677 45566777778999999999999999999999743
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=35.71 E-value=30 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHH
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKA 150 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkA 150 (194)
.++....-.|..++.+|+.+++|+-|++|
T Consensus 56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34444444599999999999999999876
No 115
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.37 E-value=37 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccccCCceeEE
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRF 167 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy~~~~~~~ 167 (194)
-+|-.-.|..||.-.+=..-..+.+|+|+-+..++||..+.--++.-|.
T Consensus 163 l~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 163 LNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 3566778888887777777788999999999999999877555544443
No 116
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=33.36 E-value=61 Score=20.32 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
........|..+...++.+.++..+.++++.+|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 4556667777888888888888888888888887
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=33.34 E-value=47 Score=28.56 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCchhh--HHHHHHHHHhhhhccccccHHHHH--HHhhcCccccc
Q 029343 119 NNSREA--VVAIRRGMLLFRQGDVVGSVAEFD--KAIELDPRQKI 159 (194)
Q Consensus 119 n~p~ea--~aaIRRGM~lFrqgDVeGSIaDFD--kAIeLDPR~kp 159 (194)
..|.|| ....--|-.++++|+.+.+.+.|. ++.+.+|.-..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 457888 656667999999999999999999 57778886543
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=39 Score=33.04 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=35.7
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+|-=|..|-|-|..+|-.||.++.+..|-..++.||..+.
T Consensus 66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH
Confidence 4555788999999999999999999999999999998764
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=29.87 E-value=52 Score=33.61 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
-.|.|+.+.-.-|++.=++||++.+.+=||.|++|++.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 34667777777799999999999999999999999975
No 120
>PRK15331 chaperone protein SicA; Provisional
Probab=27.81 E-value=64 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=38.4
Q ss_pred cccccccccCCCC-------CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 107 VSGIWDALTGGNN-------NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 107 ~sgiWd~~~GG~n-------~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+..||+++.+|.. ...+=...-+.|...|.+|+++++..-|=-...+||--.-
T Consensus 13 ~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~ 72 (165)
T PRK15331 13 AEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD 72 (165)
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 4568999987721 1222233347799999999999999999888887775543
No 121
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=27.06 E-value=35 Score=27.06 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.||.....-|+.++..|+-+.+++-|.++.+.+|.
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 344444445599999999999999999999998774
No 122
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.72 E-value=66 Score=23.65 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=27.3
Q ss_pred ccccccHHHHHHHhhc----Cc------cccccCCcee---------EEEEEecceehhh
Q 029343 138 GDVVGSVAEFDKAIEL----DP------RQKISGKGAY---------RFTISIGTKFFTF 178 (194)
Q Consensus 138 gDVeGSIaDFDkAIeL----DP------R~kpy~~~~~---------~~~~~~~~~~~~~ 178 (194)
.+++..++|++.+++. .+ -+-|.|.|+| +..+.||+.+|--
T Consensus 23 ~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 23 ARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 4456666666666542 22 4567788877 5778999998853
No 123
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.45 E-value=84 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
-..+.+..++.....|+.+++++.+..|+++.-
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999998754
No 124
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.52 E-value=61 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 127 aIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.+-|=.-.-..+.+.+++||.+|+++--..
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444545555667788899999988875443
No 125
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.24 E-value=50 Score=27.83 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.1
Q ss_pred cCccccccCCceeEEEEEec
Q 029343 153 LDPRQKISGKGAYRFTISIG 172 (194)
Q Consensus 153 LDPR~kpy~~~~~~~~~~~~ 172 (194)
+=|..-||-|||||.+|+.-
T Consensus 39 lipd~ppY~kgaF~l~I~fp 58 (153)
T KOG0422|consen 39 LIPDKPPYNKGAFRLEIDFP 58 (153)
T ss_pred ecCCCCCccCcceEEEeeCC
Confidence 45888999999999999864
No 126
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.11 E-value=84 Score=27.05 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=35.1
Q ss_pred ccccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 104 lp~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+|+....|-..- +-+-+..++.+||..+..||.+.+.+...++.+.+|.
T Consensus 68 ~p~~~~~~~~~r----~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~ 116 (409)
T TIGR00540 68 LGAHSRGWFSGR----KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE 116 (409)
T ss_pred ccHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC
Confidence 444444454332 2446777888899999999999999888888887765
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.88 E-value=52 Score=32.42 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=26.1
Q ss_pred HHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 129 RRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 129 RRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.-||.+++.||+.+.+-.|..|++-||.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~ 317 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ 317 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH
Confidence 4599999999999999999999999995
No 128
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=22.32 E-value=63 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
|+.+--..-+|-....+||+++||+-|++|++....++.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q 302 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ 302 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh
Confidence 344444445577888999999999999999976666554
No 129
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.00 E-value=86 Score=23.51 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=26.2
Q ss_pred ccccccHHHHHHHh----------hcCccccccCCceeE---------EEEEecceehh
Q 029343 138 GDVVGSVAEFDKAI----------ELDPRQKISGKGAYR---------FTISIGTKFFT 177 (194)
Q Consensus 138 gDVeGSIaDFDkAI----------eLDPR~kpy~~~~~~---------~~~~~~~~~~~ 177 (194)
.+++.++.+++.++ +-.+-+-|-|.|.|. ..+.||+.+|-
T Consensus 30 ~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~v 88 (140)
T PRK03947 30 EELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEE
Confidence 44555556665554 334456677888886 56779998874
No 130
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=21.75 E-value=34 Score=24.74 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=11.6
Q ss_pred cccccccccccccc
Q 029343 102 LFIPSVSGIWDALT 115 (194)
Q Consensus 102 l~lp~~sgiWd~~~ 115 (194)
.-.|.++|+|+++-
T Consensus 61 ~~pP~~~G~W~~if 74 (90)
T PF11808_consen 61 DEPPEGSGIWGEIF 74 (90)
T ss_pred CCCCCCCCcHHHHH
Confidence 34689999999987
No 131
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=20.90 E-value=81 Score=21.31 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=23.4
Q ss_pred HHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 131 GM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
....++.||-+.+..--|++++.+|.-+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 35579999999999999999999997543
No 132
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.65 E-value=1.6e+02 Score=28.64 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=49.0
Q ss_pred ccccccccc------ccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccccCCceeEE
Q 029343 99 TRRLFIPSV------SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRF 167 (194)
Q Consensus 99 ~RRl~lp~~------sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy~~~~~~~ 167 (194)
+.||.-|.. +|-|-.++ =.+|...|..+..+|-.|.|+|--+--|...-+||+.--||.-+-.|
T Consensus 81 p~Rl~~PLkR~G~RGegkw~~IS-----WdeAl~~IA~~~~~~~~~~~~gl~~i~~~~~~idp~~p~~Gp~s~~~ 150 (735)
T cd02758 81 PYRVLQPLKRVGPRGSGKWKPIS-----WEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKANQL 150 (735)
T ss_pred cccccCCeeecCCCCCCceEEec-----HHHHHHHHHhccccccccchhhHHHHHhhhcccccCccccCceeeEE
Confidence 346666643 57788887 78899999999999999999998666665556789988899876333
No 133
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=89 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.3
Q ss_pred HHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 128 IRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 128 IRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
|..|=+++.|||+|++++-|-.||.+-|
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcg 112 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCG 112 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcC
Confidence 5679999999999999999999998754
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.38 E-value=94 Score=16.77 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.1
Q ss_pred hhhhccccccHHHHHHHhhc
Q 029343 134 LFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 134 lFrqgDVeGSIaDFDkAIeL 153 (194)
..+.|+++++.+-||.-++.
T Consensus 11 ~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 11 CAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 45678888888888887663
Done!