Query 029343
Match_columns 194
No_of_seqs 32 out of 34
Neff 1.6
Searched_HMMs 29240
Date Mon Mar 25 18:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 97.4 8.3E-05 2.8E-09 50.6 3.1 37 120-156 9-45 (126)
2 4gco_A Protein STI-1; structur 97.1 0.00041 1.4E-08 47.1 3.4 39 119-157 76-114 (126)
3 3rkv_A Putative peptidylprolyl 97.0 0.00047 1.6E-08 46.7 3.4 40 119-158 92-131 (162)
4 3ma5_A Tetratricopeptide repea 97.0 0.00043 1.5E-08 44.8 3.0 39 119-157 2-40 (100)
5 2l6j_A TPR repeat-containing p 97.0 0.00066 2.2E-08 41.8 3.5 39 119-157 33-71 (111)
6 3upv_A Heat shock protein STI1 96.9 0.00069 2.4E-08 43.7 3.4 39 119-157 33-71 (126)
7 3vtx_A MAMA; tetratricopeptide 96.9 0.00058 2E-08 46.2 3.1 41 118-158 135-175 (184)
8 4gcn_A Protein STI-1; structur 96.9 0.00049 1.7E-08 46.5 2.5 40 119-158 37-76 (127)
9 3vtx_A MAMA; tetratricopeptide 96.8 0.0008 2.7E-08 45.5 3.1 36 122-157 3-38 (184)
10 2kc7_A BFR218_protein; tetratr 96.8 0.0012 4E-08 40.9 3.4 40 119-158 29-69 (99)
11 4gcn_A Protein STI-1; structur 96.7 0.00093 3.2E-08 45.1 2.9 36 122-157 6-41 (127)
12 3gyz_A Chaperone protein IPGC; 96.7 0.0016 5.4E-08 47.0 3.9 47 109-157 23-69 (151)
13 3upv_A Heat shock protein STI1 96.6 0.0015 5.2E-08 42.1 3.3 37 121-157 1-37 (126)
14 4ga2_A E3 SUMO-protein ligase 96.5 0.0018 6.3E-08 44.6 3.4 40 118-157 59-98 (150)
15 2hr2_A Hypothetical protein; a 96.5 0.0013 4.6E-08 50.8 2.9 51 111-163 87-141 (159)
16 1hxi_A PEX5, peroxisome target 96.4 0.0023 7.7E-08 43.0 3.3 40 118-157 45-84 (121)
17 3gyz_A Chaperone protein IPGC; 96.4 0.0023 7.8E-08 46.1 3.3 39 118-156 64-102 (151)
18 1na3_A Designed protein CTPR2; 96.4 0.0029 9.9E-08 37.7 3.3 36 121-156 6-41 (91)
19 3sz7_A HSC70 cochaperone (SGT) 96.3 0.0027 9.4E-08 43.0 3.3 36 121-156 42-77 (164)
20 2xcb_A PCRH, regulatory protei 96.2 0.0034 1.2E-07 42.0 3.4 35 121-155 83-117 (142)
21 2kat_A Uncharacterized protein 96.2 0.0042 1.4E-07 39.7 3.5 40 118-157 13-52 (115)
22 1na3_A Designed protein CTPR2; 96.2 0.0047 1.6E-07 36.7 3.4 38 120-157 39-76 (91)
23 2l6j_A TPR repeat-containing p 96.1 0.0039 1.3E-07 38.3 3.0 35 123-157 3-37 (111)
24 3k9i_A BH0479 protein; putativ 96.1 0.0031 1E-07 41.0 2.5 38 120-157 23-60 (117)
25 2lni_A Stress-induced-phosphop 96.1 0.0069 2.4E-07 37.6 4.0 35 121-155 13-47 (133)
26 3urz_A Uncharacterized protein 96.1 0.0041 1.4E-07 44.5 3.3 40 118-157 82-121 (208)
27 2vgx_A Chaperone SYCD; alterna 96.1 0.0043 1.5E-07 43.0 3.3 35 121-155 86-120 (148)
28 2kck_A TPR repeat; tetratricop 96.0 0.0017 5.6E-08 39.1 0.9 37 120-156 36-72 (112)
29 3rkv_A Putative peptidylprolyl 96.0 0.0041 1.4E-07 42.0 2.9 37 121-157 60-96 (162)
30 3q49_B STIP1 homology and U bo 95.9 0.0066 2.3E-07 38.7 3.4 36 121-156 40-75 (137)
31 3q49_B STIP1 homology and U bo 95.9 0.0059 2E-07 38.9 3.1 39 119-157 4-42 (137)
32 4i17_A Hypothetical protein; T 95.9 0.0053 1.8E-07 43.0 3.1 36 120-155 3-38 (228)
33 3sz7_A HSC70 cochaperone (SGT) 95.8 0.0076 2.6E-07 40.8 3.6 39 119-157 6-44 (164)
34 2kck_A TPR repeat; tetratricop 95.8 0.0086 2.9E-07 35.9 3.4 34 123-156 75-109 (112)
35 2xcb_A PCRH, regulatory protei 95.8 0.0063 2.2E-07 40.7 3.1 39 119-157 47-85 (142)
36 2pl2_A Hypothetical conserved 95.6 0.0081 2.8E-07 43.3 3.3 40 118-157 33-72 (217)
37 2pl2_A Hypothetical conserved 95.6 0.0075 2.6E-07 43.4 3.0 37 121-157 2-38 (217)
38 2vgx_A Chaperone SYCD; alterna 95.6 0.0084 2.9E-07 41.5 3.1 38 119-156 50-87 (148)
39 2y4t_A DNAJ homolog subfamily 95.5 0.0089 3E-07 45.1 3.3 50 105-156 9-58 (450)
40 2fbn_A 70 kDa peptidylprolyl i 95.5 0.0051 1.7E-07 42.9 1.8 54 104-159 20-73 (198)
41 1elw_A TPR1-domain of HOP; HOP 95.5 0.013 4.3E-07 35.3 3.3 37 120-156 34-70 (118)
42 4ga2_A E3 SUMO-protein ligase 95.4 0.013 4.3E-07 40.4 3.5 40 118-157 93-133 (150)
43 2dba_A Smooth muscle cell asso 95.4 0.014 4.7E-07 37.0 3.2 37 120-156 95-131 (148)
44 2h6f_A Protein farnesyltransfe 95.3 0.012 4.1E-07 48.4 3.6 36 120-155 162-197 (382)
45 2lni_A Stress-induced-phosphop 95.3 0.016 5.6E-07 35.8 3.4 38 120-157 80-117 (133)
46 2fbn_A 70 kDa peptidylprolyl i 95.3 0.013 4.3E-07 40.8 3.2 39 119-157 117-155 (198)
47 2vyi_A SGTA protein; chaperone 95.3 0.017 5.7E-07 35.2 3.3 39 119-157 75-113 (131)
48 1hxi_A PEX5, peroxisome target 95.3 0.01 3.5E-07 39.8 2.6 41 118-158 79-119 (121)
49 2dba_A Smooth muscle cell asso 95.2 0.019 6.5E-07 36.4 3.5 32 124-155 65-96 (148)
50 3ma5_A Tetratricopeptide repea 95.2 0.0093 3.2E-07 38.4 2.1 40 118-157 35-74 (100)
51 1p5q_A FKBP52, FK506-binding p 95.2 0.013 4.6E-07 45.8 3.4 40 119-158 225-264 (336)
52 1a17_A Serine/threonine protei 95.2 0.017 5.9E-07 37.2 3.3 39 119-157 76-114 (166)
53 3k9i_A BH0479 protein; putativ 95.1 0.012 4.2E-07 38.1 2.6 40 118-157 55-94 (117)
54 2xev_A YBGF; tetratricopeptide 95.1 0.018 6.1E-07 36.3 3.3 33 125-157 40-72 (129)
55 2r5s_A Uncharacterized protein 95.1 0.017 5.9E-07 39.8 3.4 40 118-157 102-141 (176)
56 3urz_A Uncharacterized protein 95.1 0.015 5E-07 41.6 3.1 35 123-157 53-87 (208)
57 2vyi_A SGTA protein; chaperone 94.9 0.025 8.7E-07 34.4 3.4 38 120-157 42-79 (131)
58 2h6f_A Protein farnesyltransfe 94.9 0.019 6.6E-07 47.2 3.6 40 118-157 194-233 (382)
59 2xev_A YBGF; tetratricopeptide 94.8 0.025 8.6E-07 35.6 3.3 34 124-157 76-109 (129)
60 1elw_A TPR1-domain of HOP; HOP 94.8 0.029 1E-06 33.6 3.5 39 119-157 67-105 (118)
61 2vq2_A PILW, putative fimbrial 94.8 0.025 8.6E-07 37.8 3.4 37 120-156 4-40 (225)
62 1zu2_A Mitochondrial import re 94.7 0.018 6.1E-07 44.5 2.9 40 118-157 30-79 (158)
63 1kt0_A FKBP51, 51 kDa FK506-bi 94.7 0.02 6.7E-07 47.1 3.3 40 119-158 346-385 (457)
64 4i17_A Hypothetical protein; T 94.6 0.025 8.6E-07 39.5 3.3 41 118-158 70-110 (228)
65 2kc7_A BFR218_protein; tetratr 94.6 0.02 6.9E-07 35.2 2.5 31 127-157 3-33 (99)
66 2e2e_A Formate-dependent nitri 94.6 0.021 7.1E-07 38.6 2.6 38 119-156 39-76 (177)
67 1hh8_A P67PHOX, NCF-2, neutrop 94.6 0.031 1.1E-06 38.2 3.5 40 119-158 66-105 (213)
68 1elr_A TPR2A-domain of HOP; HO 94.5 0.034 1.2E-06 34.0 3.3 38 120-157 34-71 (131)
69 2hr2_A Hypothetical protein; a 94.4 0.023 8E-07 43.8 2.9 36 121-156 54-96 (159)
70 2yhc_A BAMD, UPF0169 lipoprote 94.4 0.033 1.1E-06 40.0 3.5 38 121-158 38-75 (225)
71 1a17_A Serine/threonine protei 94.4 0.036 1.2E-06 35.7 3.3 38 120-157 43-80 (166)
72 2c2l_A CHIP, carboxy terminus 94.3 0.029 1E-06 42.5 3.3 40 118-157 66-105 (281)
73 1na0_A Designed protein CTPR3; 94.3 0.043 1.5E-06 33.0 3.4 38 120-157 73-110 (125)
74 1hh8_A P67PHOX, NCF-2, neutrop 94.3 0.04 1.4E-06 37.6 3.5 44 114-157 111-154 (213)
75 3ieg_A DNAJ homolog subfamily 94.3 0.038 1.3E-06 39.3 3.5 39 119-157 301-339 (359)
76 4g1t_A Interferon-induced prot 94.3 0.014 4.9E-07 44.6 1.4 40 119-158 425-464 (472)
77 2e2e_A Formate-dependent nitri 94.1 0.046 1.6E-06 36.9 3.5 40 118-157 109-148 (177)
78 2if4_A ATFKBP42; FKBP-like, al 94.1 0.024 8.3E-07 44.5 2.5 41 118-158 258-298 (338)
79 1elr_A TPR2A-domain of HOP; HO 94.0 0.028 9.6E-07 34.3 2.2 36 122-157 2-37 (131)
80 2c2l_A CHIP, carboxy terminus 94.0 0.035 1.2E-06 42.1 3.2 39 119-157 33-71 (281)
81 1na0_A Designed protein CTPR3; 94.0 0.046 1.6E-06 32.9 3.1 37 120-156 39-75 (125)
82 2kat_A Uncharacterized protein 93.9 0.03 1E-06 35.6 2.2 39 119-157 48-86 (115)
83 2fo7_A Synthetic consensus TPR 93.8 0.055 1.9E-06 32.6 3.2 36 121-156 100-135 (136)
84 1ihg_A Cyclophilin 40; ppiase 93.8 0.042 1.4E-06 44.4 3.4 39 118-156 301-339 (370)
85 3uq3_A Heat shock protein STI1 93.7 0.055 1.9E-06 36.9 3.4 37 120-156 169-205 (258)
86 3qky_A Outer membrane assembly 93.7 0.036 1.2E-06 39.9 2.5 40 118-157 43-85 (261)
87 1xnf_A Lipoprotein NLPI; TPR, 93.6 0.042 1.4E-06 38.2 2.7 37 120-156 39-75 (275)
88 3qky_A Outer membrane assembly 93.6 0.061 2.1E-06 38.6 3.6 40 118-157 9-48 (261)
89 1w3b_A UDP-N-acetylglucosamine 93.5 0.053 1.8E-06 40.7 3.3 36 121-156 64-99 (388)
90 2r5s_A Uncharacterized protein 93.4 0.014 4.9E-07 40.1 0.1 38 118-155 34-71 (176)
91 1xnf_A Lipoprotein NLPI; TPR, 93.4 0.064 2.2E-06 37.3 3.3 40 119-158 106-145 (275)
92 1p5q_A FKBP52, FK506-binding p 93.4 0.027 9.2E-07 44.1 1.6 48 109-158 134-181 (336)
93 2pzi_A Probable serine/threoni 93.3 0.037 1.3E-06 48.0 2.5 38 119-156 428-465 (681)
94 3bee_A Putative YFRE protein; 93.2 0.085 2.9E-06 35.7 3.7 40 119-159 38-77 (93)
95 3mkr_A Coatomer subunit epsilo 93.2 0.061 2.1E-06 41.3 3.2 38 120-157 196-233 (291)
96 3ieg_A DNAJ homolog subfamily 93.2 0.065 2.2E-06 38.1 3.1 39 119-157 32-70 (359)
97 3u4t_A TPR repeat-containing p 93.2 0.041 1.4E-06 38.5 2.1 35 118-152 31-65 (272)
98 3fp2_A TPR repeat-containing p 93.1 0.066 2.3E-06 41.2 3.3 39 119-157 54-92 (537)
99 3uq3_A Heat shock protein STI1 93.1 0.076 2.6E-06 36.2 3.2 39 119-157 134-172 (258)
100 1zu2_A Mitochondrial import re 92.9 0.034 1.2E-06 43.0 1.5 40 118-157 74-124 (158)
101 2q7f_A YRRB protein; TPR, prot 92.8 0.096 3.3E-06 35.7 3.4 48 107-156 42-89 (243)
102 4eqf_A PEX5-related protein; a 92.7 0.088 3E-06 39.0 3.4 36 121-156 96-131 (365)
103 3as5_A MAMA; tetratricopeptide 92.6 0.11 3.9E-06 33.2 3.4 35 121-155 39-73 (186)
104 3u4t_A TPR repeat-containing p 92.6 0.059 2E-06 37.7 2.2 37 120-156 138-174 (272)
105 2pzi_A Probable serine/threoni 92.4 0.058 2E-06 46.7 2.4 39 119-157 529-567 (681)
106 4gyw_A UDP-N-acetylglucosamine 92.3 0.084 2.9E-06 47.7 3.4 39 119-157 4-42 (723)
107 1w3b_A UDP-N-acetylglucosamine 92.2 0.1 3.5E-06 39.1 3.2 38 120-157 165-202 (388)
108 1kt0_A FKBP51, 51 kDa FK506-bi 92.0 0.036 1.2E-06 45.5 0.7 48 109-158 255-302 (457)
109 2ho1_A Type 4 fimbrial biogene 92.0 0.17 5.8E-06 35.1 4.0 32 124-155 37-68 (252)
110 2fo7_A Synthetic consensus TPR 92.0 0.15 5E-06 30.7 3.2 38 120-157 65-102 (136)
111 2q7f_A YRRB protein; TPR, prot 91.9 0.15 5.2E-06 34.7 3.6 36 121-156 190-225 (243)
112 3bee_A Putative YFRE protein; 91.9 0.14 4.8E-06 34.6 3.4 38 120-157 2-42 (93)
113 2vq2_A PILW, putative fimbrial 91.8 0.15 5E-06 34.0 3.4 36 121-156 39-74 (225)
114 4gyw_A UDP-N-acetylglucosamine 91.7 0.11 3.6E-06 47.0 3.4 38 120-157 107-144 (723)
115 2y4t_A DNAJ homolog subfamily 91.6 0.14 5E-06 38.5 3.5 38 120-157 325-362 (450)
116 3hym_B Cell division cycle pro 91.5 0.16 5.4E-06 36.0 3.4 37 120-156 121-157 (330)
117 2yhc_A BAMD, UPF0169 lipoprote 91.5 0.13 4.6E-06 36.7 3.1 35 123-157 3-37 (225)
118 1wao_1 Serine/threonine protei 91.3 0.15 5E-06 42.5 3.5 37 120-156 70-106 (477)
119 1fch_A Peroxisomal targeting s 91.2 0.17 5.7E-06 36.9 3.4 37 121-157 129-165 (368)
120 3sf4_A G-protein-signaling mod 91.1 0.17 5.8E-06 36.9 3.3 37 120-156 5-41 (406)
121 3qou_A Protein YBBN; thioredox 91.1 0.16 5.6E-06 38.3 3.4 39 119-157 214-252 (287)
122 1fch_A Peroxisomal targeting s 91.1 0.18 6E-06 36.8 3.4 35 121-155 248-282 (368)
123 3as5_A MAMA; tetratricopeptide 91.1 0.2 7E-06 32.0 3.3 34 122-155 74-107 (186)
124 3nf1_A KLC 1, kinesin light ch 90.9 0.22 7.5E-06 34.9 3.6 39 115-153 18-56 (311)
125 3hym_B Cell division cycle pro 90.9 0.13 4.5E-06 36.4 2.5 36 121-156 267-302 (330)
126 4abn_A Tetratricopeptide repea 90.8 0.17 5.8E-06 41.4 3.5 38 119-156 132-169 (474)
127 2ho1_A Type 4 fimbrial biogene 90.7 0.25 8.4E-06 34.3 3.7 38 119-156 136-173 (252)
128 4f3v_A ESX-1 secretion system 90.6 0.17 5.7E-06 41.9 3.3 46 111-156 194-240 (282)
129 2gw1_A Mitochondrial precursor 90.6 0.2 6.8E-06 38.0 3.3 38 119-156 68-105 (514)
130 4eqf_A PEX5-related protein; a 90.5 0.21 7.1E-06 37.0 3.4 34 123-156 280-313 (365)
131 3cv0_A Peroxisome targeting si 90.5 0.22 7.5E-06 35.2 3.4 39 120-158 85-123 (327)
132 4abn_A Tetratricopeptide repea 90.4 0.19 6.5E-06 41.1 3.4 36 122-157 256-291 (474)
133 3fp2_A TPR repeat-containing p 90.4 0.23 7.7E-06 38.2 3.6 37 121-157 22-58 (537)
134 2gw1_A Mitochondrial precursor 89.9 0.22 7.6E-06 37.7 3.1 35 123-157 38-72 (514)
135 3ro2_A PINS homolog, G-protein 89.7 0.26 8.8E-06 34.2 3.1 34 123-156 4-37 (338)
136 3ro3_A PINS homolog, G-protein 89.7 0.12 4.3E-06 32.0 1.4 35 122-156 7-41 (164)
137 1wao_1 Serine/threonine protei 89.7 0.22 7.6E-06 41.4 3.3 39 119-157 35-73 (477)
138 3cv0_A Peroxisome targeting si 89.7 0.28 9.7E-06 34.6 3.4 36 121-156 203-238 (327)
139 3nf1_A KLC 1, kinesin light ch 89.6 0.18 6E-06 35.4 2.3 39 118-156 272-310 (311)
140 3qou_A Protein YBBN; thioredox 89.4 0.25 8.7E-06 37.3 3.2 37 121-157 114-150 (287)
141 3edt_B KLC 2, kinesin light ch 89.4 0.24 8.1E-06 33.9 2.7 38 116-153 119-156 (283)
142 2v5f_A Prolyl 4-hydroxylase su 89.4 0.32 1.1E-05 32.1 3.3 38 121-158 43-80 (104)
143 1ihg_A Cyclophilin 40; ppiase 89.1 0.25 8.5E-06 39.9 3.1 37 120-156 269-305 (370)
144 2vsy_A XCC0866; transferase, g 88.9 0.26 8.9E-06 40.2 3.1 37 120-156 53-89 (568)
145 3edt_B KLC 2, kinesin light ch 88.7 0.34 1.2E-05 33.1 3.1 37 117-153 78-114 (283)
146 2vsy_A XCC0866; transferase, g 87.8 0.37 1.3E-05 39.3 3.3 40 118-157 85-124 (568)
147 4a1s_A PINS, partner of inscut 87.4 0.42 1.4E-05 35.7 3.1 38 120-157 44-81 (411)
148 2xpi_A Anaphase-promoting comp 87.2 0.43 1.5E-05 37.5 3.2 32 124-155 516-547 (597)
149 1qqe_A Vesicular transport pro 86.7 0.4 1.4E-05 35.9 2.7 36 124-159 199-234 (292)
150 2ond_A Cleavage stimulation fa 86.2 0.59 2E-05 35.0 3.4 38 119-156 128-166 (308)
151 2ond_A Cleavage stimulation fa 86.1 0.5 1.7E-05 35.4 3.0 37 121-157 165-202 (308)
152 4g1t_A Interferon-induced prot 85.9 0.58 2E-05 35.7 3.3 39 119-157 242-280 (472)
153 2if4_A ATFKBP42; FKBP-like, al 85.5 0.2 6.9E-06 39.3 0.6 48 109-158 166-213 (338)
154 1ouv_A Conserved hypothetical 85.0 0.7 2.4E-05 33.0 3.2 32 121-152 3-34 (273)
155 1qqe_A Vesicular transport pro 84.4 0.37 1.3E-05 36.1 1.6 37 121-157 74-110 (292)
156 2xpi_A Anaphase-promoting comp 83.4 0.89 3.1E-05 35.7 3.4 36 121-156 370-405 (597)
157 3mkr_A Coatomer subunit epsilo 82.6 0.93 3.2E-05 34.6 3.2 37 121-157 127-163 (291)
158 3ly7_A Transcriptional activat 82.1 0.85 2.9E-05 39.7 3.1 36 121-156 274-309 (372)
159 3ro3_A PINS homolog, G-protein 81.6 0.77 2.6E-05 28.3 2.0 34 124-157 49-82 (164)
160 3gw4_A Uncharacterized protein 80.9 0.97 3.3E-05 30.0 2.4 37 119-155 61-97 (203)
161 3ro2_A PINS homolog, G-protein 79.9 0.73 2.5E-05 31.9 1.6 39 119-157 78-116 (338)
162 1dce_A Protein (RAB geranylger 79.6 1.2 4E-05 38.7 3.1 38 119-156 102-141 (567)
163 3sf4_A G-protein-signaling mod 79.4 0.72 2.5E-05 33.6 1.5 39 119-157 82-120 (406)
164 1hz4_A MALT regulatory protein 76.0 3 0.0001 31.0 4.1 37 121-157 132-168 (373)
165 2ifu_A Gamma-SNAP; membrane fu 74.5 2.1 7.3E-05 32.1 2.9 35 123-158 194-228 (307)
166 3gw4_A Uncharacterized protein 72.8 3.5 0.00012 27.3 3.4 36 121-156 23-58 (203)
167 3ly7_A Transcriptional activat 72.7 1.6 5.6E-05 37.9 2.2 38 123-160 309-346 (372)
168 1dce_A Protein (RAB geranylger 72.0 2.4 8.2E-05 36.8 3.1 40 118-157 172-225 (567)
169 4a1s_A PINS, partner of inscut 70.8 1.6 5.5E-05 32.4 1.5 37 121-157 220-256 (411)
170 1ouv_A Conserved hypothetical 69.9 3.7 0.00013 29.2 3.2 30 124-153 74-107 (273)
171 3u3w_A Transcriptional activat 68.7 2.3 8E-05 31.4 2.0 40 119-158 191-230 (293)
172 2ooe_A Cleavage stimulation fa 68.4 4 0.00014 32.8 3.4 37 120-156 317-353 (530)
173 2ifu_A Gamma-SNAP; membrane fu 67.6 3.3 0.00011 31.1 2.6 35 122-156 74-108 (307)
174 3dra_A Protein farnesyltransfe 67.2 3.7 0.00013 33.3 3.1 40 118-157 174-219 (306)
175 3ulq_A Response regulator aspa 65.3 3.1 0.00011 31.5 2.1 41 119-159 138-178 (383)
176 3q15_A PSP28, response regulat 63.1 6.3 0.00022 29.9 3.5 38 119-156 256-293 (378)
177 2ooe_A Cleavage stimulation fa 61.9 6.2 0.00021 31.7 3.3 37 120-156 268-319 (530)
178 3rjv_A Putative SEL1 repeat pr 61.7 6.5 0.00022 28.1 3.1 34 122-155 16-49 (212)
179 3ulq_A Response regulator aspa 61.4 5 0.00017 30.3 2.6 34 121-154 261-294 (383)
180 2qfc_A PLCR protein; TPR, HTH, 57.4 5.1 0.00017 29.5 2.0 33 124-156 196-228 (293)
181 3u3w_A Transcriptional activat 56.9 8.7 0.0003 28.2 3.2 35 121-155 233-268 (293)
182 3dss_A Geranylgeranyl transfer 56.7 8 0.00027 32.2 3.3 38 119-156 139-177 (331)
183 3dss_A Geranylgeranyl transfer 56.7 6.5 0.00022 32.8 2.7 41 118-158 173-227 (331)
184 3q15_A PSP28, response regulat 55.0 5.9 0.0002 30.1 2.1 41 119-159 136-176 (378)
185 1hz4_A MALT regulatory protein 54.5 10 0.00035 28.2 3.2 32 125-156 15-46 (373)
186 4b4t_Q 26S proteasome regulato 52.9 9.5 0.00032 28.6 2.8 37 123-159 3-39 (434)
187 3dra_A Protein farnesyltransfe 52.6 9.6 0.00033 30.9 3.1 46 109-156 54-101 (306)
188 2qfc_A PLCR protein; TPR, HTH, 49.7 14 0.0005 27.1 3.4 32 122-153 153-184 (293)
189 3q7a_A Farnesyltransferase alp 48.1 12 0.0004 31.7 3.0 40 118-157 195-241 (349)
190 3q7a_A Farnesyltransferase alp 47.1 14 0.00046 31.3 3.2 39 118-156 117-157 (349)
191 1pc2_A Mitochondria fission pr 42.7 18 0.00063 27.7 3.1 34 124-157 71-104 (152)
192 2xm6_A Protein corresponding t 37.4 18 0.00061 28.7 2.3 33 123-155 398-434 (490)
193 3rjv_A Putative SEL1 repeat pr 36.4 22 0.00076 25.2 2.5 34 122-155 83-120 (212)
194 4f3v_A ESX-1 secretion system 34.8 18 0.0006 29.8 2.0 28 130-158 13-40 (282)
195 3e4b_A ALGK; tetratricopeptide 28.4 34 0.0012 27.6 2.6 38 122-159 174-214 (452)
196 3u64_A Protein TP_0956; tetrat 26.7 41 0.0014 28.9 3.0 35 123-157 198-237 (301)
197 3qww_A SET and MYND domain-con 26.1 47 0.0016 28.2 3.2 44 117-162 375-418 (433)
198 1klx_A Cysteine rich protein B 26.0 57 0.002 21.9 3.1 34 122-155 91-128 (138)
199 2v5f_A Prolyl 4-hydroxylase su 25.0 57 0.002 21.0 2.8 33 124-156 5-37 (104)
200 1klx_A Cysteine rich protein B 24.4 64 0.0022 21.7 3.1 33 122-154 55-91 (138)
201 3ax2_A Mitochondrial import re 22.9 59 0.002 22.7 2.7 29 128-156 21-49 (73)
202 1p90_A NAFY protein, hypotheti 21.0 23 0.0008 26.2 0.3 46 110-155 67-115 (145)
203 2cfu_A SDSA1; SDS-hydrolase, l 20.8 48 0.0016 29.8 2.3 34 124-157 449-482 (658)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.43 E-value=8.3e-05 Score=50.63 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=22.3
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+|..+.++..+|..+|++||.+++|+.|++|+++||.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~ 45 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE 45 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3555555556666666666666666666666666654
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.06 E-value=0.00041 Score=47.14 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
-+|.++.++.++|..++.+|+.++++++|++|+++||.-
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 356677777788888888888888888888888887754
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.03 E-value=0.00047 Score=46.73 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=36.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
-+|.++.++.++|..++.+|+.++++++|.+|+++||.-.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4688999999999999999999999999999999999754
No 4
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.01 E-value=0.00043 Score=44.78 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 358889999999999999999999999999999999874
No 5
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00066 Score=41.77 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=36.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|+.++.+|+.+++++.|++|++++|..
T Consensus 33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 457789999999999999999999999999999999985
No 6
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00069 Score=43.70 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.++..+|..++.+|+.++++++|++|+++||..
T Consensus 33 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 33 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 346777888888888888888888888888888888863
No 7
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.92 E-value=0.00058 Score=46.21 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=36.0
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..+|.++.++...|..++++|+.+++++.|++|+++||.--
T Consensus 135 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 135 SIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 45688899999999999999999999999999999999753
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.87 E-value=0.00049 Score=46.47 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=35.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
-+|.++.++..+|+.++.+|+.+++|++|++|++++|...
T Consensus 37 ~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 37 LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 3578899999999999999999999999999999998754
No 9
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.80 E-value=0.0008 Score=45.51 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.++..|...|..++.+||.+++++.|++|+++||..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~ 38 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN 38 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888888888864
No 10
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0012 Score=40.92 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCchhhH-HHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~-aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..|.++. ++...|..++.+|+.+++++.|++|+++||...
T Consensus 29 ~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 4578888 999999999999999999999999999999754
No 11
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.73 E-value=0.00093 Score=45.09 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++...|..+|++||.+++|+.|++||++||..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~ 41 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN 41 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456666678999999999999999999999999974
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.66 E-value=0.0016 Score=46.97 Aligned_cols=47 Identities=6% Similarity=-0.051 Sum_probs=31.2
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++..+ .-+|.++.++...|+.++++|+.+++++.|++|+++||.-
T Consensus 23 ~~l~~al--~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~ 69 (151)
T 3gyz_A 23 ATLKDIN--AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69 (151)
T ss_dssp CCTGGGC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHh--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3444444 4566777777777777777777777777777777777753
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0015 Score=42.08 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.++..+...|..++.+||.+++++.|++|++++|..
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 37 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4578889999999999999999999999999999974
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.52 E-value=0.0018 Score=44.61 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|+.++.+|+.+.+++.|.+|+++||..
T Consensus 59 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 59 NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 4568888899999999999999999999999999999874
No 15
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.51 E-value=0.0013 Score=50.77 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=43.6
Q ss_pred cccccCCCCCchhhHHH----HHHHHHhhhhccccccHHHHHHHhhcCccccccCCc
Q 029343 111 WDALTGGNNNSREAVVA----IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG 163 (194)
Q Consensus 111 Wd~~~GG~n~p~ea~aa----IRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy~~~ 163 (194)
||... .-+|.++.++ .++|..+..+|+.+++|++|++|++++|.-+.--++
T Consensus 87 ~n~~~--e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 87 FNRRG--ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHC--CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hhccc--cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 55554 6689999999 999999999999999999999999999986654443
No 16
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.44 E-value=0.0023 Score=43.00 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus 45 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3568889999999999999999999999999999999974
No 17
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.40 E-value=0.0023 Score=46.13 Aligned_cols=39 Identities=5% Similarity=-0.048 Sum_probs=30.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+|.++.++...|+.++.+|+.+++++.|++|+++||.
T Consensus 64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 345777777777788888888888888888888888875
No 18
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.39 E-value=0.0029 Score=37.68 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 41 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 445555556666666666666666666666666554
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.34 E-value=0.0027 Score=42.97 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..++.+|+.+++++.|++|+++||.
T Consensus 42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 444555555555555555555555555555555554
No 20
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.25 E-value=0.0034 Score=42.02 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
|.++.++...|+.++.+|+.+++++.|++|++++|
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444445555555555555555555555444
No 21
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.21 E-value=0.0042 Score=39.67 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 3457778888888888888888888888888888888864
No 22
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.17 E-value=0.0047 Score=36.72 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 46778889999999999999999999999999999853
No 23
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0039 Score=38.25 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
++.++...|..++.+|+.+++++.|++|++++|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 57788899999999999999999999999999974
No 24
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.11 E-value=0.0031 Score=40.96 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=32.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|+.++.+|+.+++++.|++|++++|..
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 47788888888888889999999999999999888875
No 25
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.11 E-value=0.0069 Score=37.55 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++.++...|+.++.+||.+.+++.|++|++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 47 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP 47 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44455555555555555555555555555555544
No 26
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.09 E-value=0.0041 Score=44.54 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.|++|+++||.-
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 4568899999999999999999999999999999999975
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.09 E-value=0.0043 Score=42.99 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
|.++.++...|..+..+|+.+++++.|++|++++|
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44444444444444444444444444444444444
No 28
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.05 E-value=0.0017 Score=39.09 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=30.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4667777778888888888888888888888888876
No 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.02 E-value=0.0041 Score=42.03 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++.++..+|+.++++|+.+.++++|++|+++||..
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 6778899999999999999999999999999999974
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.91 E-value=0.0066 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|+.++.+|+.+++++.|++|++++|.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 40 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 334444444444444444444444444444444443
No 31
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.91 E-value=0.0059 Score=38.93 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.++.++..+...|..++.+||.+++++.|++|++++|..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~ 42 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV 42 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc
Confidence 457789999999999999999999999999999999974
No 32
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.88 E-value=0.0053 Score=42.99 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=25.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
++.||..+..+|..++.+|+.+++++.|++|++++|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence 345667777777777777777777777777777776
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.83 E-value=0.0076 Score=40.76 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+.++.++...|..++++||.+++++.|++|++++|..
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 44 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN 44 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC
Confidence 567889999999999999999999999999999999973
No 34
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.81 E-value=0.0086 Score=35.87 Aligned_cols=34 Identities=15% Similarity=-0.081 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhhhh-ccccccHHHHHHHhhcCcc
Q 029343 123 EAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 123 ea~aaIRRGM~lFrq-gDVeGSIaDFDkAIeLDPR 156 (194)
++.++...|..++.+ |+.+.+++.|.++++.+|.
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 455555555555555 5555555555555555553
No 35
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.81 E-value=0.0063 Score=40.72 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=26.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus 47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 346666666666777777777777777777777776653
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.64 E-value=0.0081 Score=43.28 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=37.1
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..+.++|+.+++++.|++|+++||..
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999999999975
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.59 E-value=0.0075 Score=43.45 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|+++.++...|..++++|+.+++++.|++|+++||..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 38 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6788999999999999999999999999999999975
No 38
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.59 E-value=0.0084 Score=41.50 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=23.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.++.++...|+.++.+|+.+++++.|++|+++||.
T Consensus 50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34556666666666666666666666666666666664
No 39
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.53 E-value=0.0089 Score=45.12 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred cccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 105 p~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.+...|..++ ..+|.++.++...|..++++|+.+.+++.|++|++.+|.
T Consensus 9 ~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 58 (450)
T 2y4t_A 9 SGVDLGTENLY--FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD 58 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccccc--cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34555666666 667888888888888888888888888888888887775
No 40
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.52 E-value=0.0051 Score=42.87 Aligned_cols=54 Identities=11% Similarity=0.241 Sum_probs=44.8
Q ss_pred ccccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 104 lp~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
++.+-..|+... ......+..+...|..+|++|+.+.+++.|++|++++|....
T Consensus 20 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~ 73 (198)
T 2fbn_A 20 QGAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE 73 (198)
T ss_dssp --CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT
T ss_pred ccccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 456777888776 455778888999999999999999999999999999987543
No 41
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.013 Score=35.28 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.8
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3566777777888888888888888888888888775
No 42
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.43 E-value=0.013 Score=40.36 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHH-HHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEF-DKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDF-DkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.| ++|+++||.-
T Consensus 93 ~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 93 ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 456899999999999999999999999986 9999999964
No 43
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.014 Score=37.03 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=25.3
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3555666666777777777777777777777777665
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.31 E-value=0.012 Score=48.41 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+|.++.++..+|+.+..+|+.+++++.|++|+++||
T Consensus 162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 344444444444444444444444444444444444
No 45
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.31 E-value=0.016 Score=35.84 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=30.2
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 45677778888888888888888888888888888753
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.30 E-value=0.013 Score=40.84 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=35.7
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++.+.|..++.+|+.+++++.|.+|++++|..
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 357788999999999999999999999999999999965
No 47
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.27 E-value=0.017 Score=35.21 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 346778889999999999999999999999999998863
No 48
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.26 E-value=0.01 Score=39.77 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=32.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.-+|.++.++...|+.+..+|+.+++++.|++|++++|...
T Consensus 79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 45688889999999999999999999999999999999753
No 49
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.18 E-value=0.019 Score=36.35 Aligned_cols=32 Identities=31% Similarity=0.246 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++...|..++.+|+.+.+++.|++|++++|
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 44455555555555555555555555555554
No 50
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.18 E-value=0.0093 Score=38.40 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=36.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.|++|++++|+.
T Consensus 35 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 35 ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3457888999999999999999999999999999998864
No 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.18 E-value=0.013 Score=45.83 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+|.++.++.++|..++.+|+.++++++|++|++++|...
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 4578899999999999999999999999999999999753
No 52
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.15 E-value=0.017 Score=37.24 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=35.3
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..++.+|+.+++++.|++|++++|.-
T Consensus 76 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 347788899999999999999999999999999999864
No 53
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.15 E-value=0.012 Score=38.06 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...|.++.++...|+.++.+|+.+++++.|++|++++|.-
T Consensus 55 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3457889999999999999999999999999999997753
No 54
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.13 E-value=0.018 Score=36.29 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 125 ~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.++...|+.++.+||.+++++.|+++++.+|.-
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 566677777777777777777777777777653
No 55
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.13 E-value=0.017 Score=39.75 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=36.9
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|+.+..+|+.+++++.|+++++++|..
T Consensus 102 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 102 AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3568899999999999999999999999999999999974
No 56
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.08 E-value=0.015 Score=41.62 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
++......|..++++|+.+++++.|++|+++||.-
T Consensus 53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 33333349999999999999999999999999974
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.89 E-value=0.025 Score=34.37 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=32.9
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 46678888889999999999999999999999998863
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.86 E-value=0.019 Score=47.17 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=33.3
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++..+|..+.++|+.+++++.|++||++||+.
T Consensus 194 ~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 3467888888888888888888888888888888888874
No 59
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.83 E-value=0.025 Score=35.59 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++...|+.++.+|+.+++++.|+++++.+|.-
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 7889999999999999999999999999999863
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.82 E-value=0.029 Score=33.63 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..++.+|+.+++++.|++|++++|.-
T Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 346678899999999999999999999999999999864
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.78 E-value=0.025 Score=37.79 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=21.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
++.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 40 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK 40 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc
Confidence 3455555555555555555555555555555555554
No 62
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.73 E-value=0.018 Score=44.53 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=36.1
Q ss_pred CCCchhhHHHHHHHHHhhhhcc----------ccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgD----------VeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.+++..|..+..+++ ++++|+.|++||++||..
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 5679999999999999999887 459999999999999985
No 63
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.73 E-value=0.02 Score=47.09 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=33.5
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+|.++.++.++|..+..+|+.+.++++|++|+++||...
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 4578899999999999999999999999999999999654
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.65 E-value=0.025 Score=39.54 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=36.8
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..+|.++.++...|..++.+||.+++++.|++|++++|.-.
T Consensus 70 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 70 KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 45688999999999999999999999999999999999743
No 65
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.64 E-value=0.02 Score=35.21 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 127 aIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.+|..++.+|+.+++++.|++|++++|.-
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3678999999999999999999999999975
No 66
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.56 E-value=0.021 Score=38.58 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 76 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 45677778888888888888888888888888888875
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.55 E-value=0.031 Score=38.17 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+|.++.++...|..++.+|+.+++++.|++|++++|.-.
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 3477889999999999999999999999999999998643
No 68
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.50 E-value=0.034 Score=33.95 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.8
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 46677778888888888888888888888888888764
No 69
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.40 E-value=0.023 Score=43.79 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhc-------Ccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL-------DPR 156 (194)
|.++.++..+|+.+..+|+.+++|++||+||++ ||.
T Consensus 54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 456779999999999999999999999999999 985
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.40 E-value=0.033 Score=39.97 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+..+.++...|+.++++||.+.+|+.|+++++++|.-.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34467889999999999999999999999999999854
No 71
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.37 E-value=0.036 Score=35.72 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=33.2
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 46678888899999999999999999999999999853
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.34 E-value=0.029 Score=42.49 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.|.+|++++|..
T Consensus 66 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4557777777777888888888888888888888877754
No 73
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.29 E-value=0.043 Score=33.04 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=32.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.++..+...|..++.+|+.+.+++.|+++++++|..
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35667788888999999999999999999999998854
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.27 E-value=0.04 Score=37.64 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=38.3
Q ss_pred ccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 114 ~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|....+.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 33335667788999999999999999999999999999999965
No 75
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.26 E-value=0.038 Score=39.34 Aligned_cols=39 Identities=8% Similarity=0.071 Sum_probs=34.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..+..+|+.+.+++.|.+|++++|.-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 301 MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 357788889999999999999999999999999999863
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.25 E-value=0.014 Score=44.64 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=20.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+|.++.++...|..+..+||.+.+++.|.+|++++|...
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4688999999999999999999999999999999998864
No 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.10 E-value=0.046 Score=36.86 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+.+++.|++|++++|.-
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 3457888999999999999999999999999999999974
No 78
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.10 E-value=0.024 Score=44.53 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
...|.++.++.++|+.+..+|+.++++++|.+|++++|...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 34578899999999999999999999999999999999743
No 79
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.04 E-value=0.028 Score=34.34 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+..+...|...+.+|+.+.+++.|++|++++|..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 37 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN 37 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 467788899999999999999999999999999864
No 80
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.04 E-value=0.035 Score=42.10 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++..+|+.++.+|+.++++++|++|++++|..
T Consensus 33 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 457888999999999999999999999999999998864
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.00 E-value=0.046 Score=32.91 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=25.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus 39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 3455666666677777777777777777777777664
No 82
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.86 E-value=0.03 Score=35.60 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..+..+|+.+++++.|++|++++|..
T Consensus 48 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 48 FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 346778888999999999999999999999999999864
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.81 E-value=0.055 Score=32.58 Aligned_cols=36 Identities=36% Similarity=0.560 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++..+...|..++.+|+.+.+++.|+++++++|.
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 555667777788888888888888888888888875
No 84
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.78 E-value=0.042 Score=44.42 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...|.++.++.++|+.++.+|+.++++++|.+|++++|.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 345677777777788888888888888888888877775
No 85
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.055 Score=36.92 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=28.7
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 4566777777788888888888888888888888776
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.69 E-value=0.036 Score=39.87 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCCchh---hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~e---a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...|.+ +.++...|+.++++||.+.+++.|+++++++|.-
T Consensus 43 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 43 TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 334555 7888899999999999999999999999998853
No 87
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.60 E-value=0.042 Score=38.20 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 75 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 3455666666666666666666666666666666664
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.60 E-value=0.061 Score=38.64 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...+.++..+...|..++++|+.+++++.|+++++.+|.-
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 48 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH 48 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 3467889999999999999999999999999999999864
No 89
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.54 E-value=0.053 Score=40.66 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..++++|+.+++++.|++|++++|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 444444444455555555555555555555544443
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.44 E-value=0.014 Score=40.14 Aligned_cols=38 Identities=5% Similarity=-0.097 Sum_probs=34.3
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
..+|.++.++...|..+.++|+.+++++.|++|++++|
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 34688889999999999999999999999999999988
No 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.38 E-value=0.064 Score=37.27 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..|.++.++...|..++.+|+.+++++.|++|++++|...
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 3567788999999999999999999999999999999764
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.38 E-value=0.027 Score=44.09 Aligned_cols=48 Identities=13% Similarity=0.376 Sum_probs=40.5
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..|+..+ ..++.++.++...|..+|++|+.+.+++.|++|++++|...
T Consensus 134 ~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 181 (336)
T 1p5q_A 134 ESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES 181 (336)
T ss_dssp CGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred chhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence 3455444 44678889999999999999999999999999999999863
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.33 E-value=0.037 Score=47.96 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=19.5
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.++.++..+|..++.+|+.+++++.|++|+++||.
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 34555555555555555555555555555555555543
No 94
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.22 E-value=0.085 Score=35.70 Aligned_cols=40 Identities=3% Similarity=-0.095 Sum_probs=34.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
-.|.++.+.+=.|+..|++||.++.|+.+.++++.||. .|
T Consensus 38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~ 77 (93)
T 3bee_A 38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL 77 (93)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence 45777777777899999999999999999999999997 54
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.20 E-value=0.061 Score=41.25 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=35.0
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|+.+.++|+.+++++.|++|+++||.-
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 57788888899999999999999999999999999964
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.17 E-value=0.065 Score=38.09 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 457788888888888888888888888888888888754
No 97
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.16 E-value=0.041 Score=38.49 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=27.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhh
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIe 152 (194)
...|.++.++...|..++.+|+.+.+++.|++|++
T Consensus 31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34567777777788888888888888888888887
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.12 E-value=0.066 Score=41.22 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..++++|+.+.+++.|++|+++||..
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 92 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 456777788888888888888888888888888888763
No 99
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.076 Score=36.20 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=36.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 568899999999999999999999999999999999873
No 100
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.93 E-value=0.034 Score=42.96 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=36.1
Q ss_pred CCCchhhHHHHHHHHHhhhhc-----------cccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQG-----------DVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqg-----------DVeGSIaDFDkAIeLDPR~ 157 (194)
.-+|.++.++...|..+..+| +.+++++.|++|+++||.-
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 356889999999999999985 9999999999999999974
No 101
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.78 E-value=0.096 Score=35.67 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=37.8
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+...++..+ ...|.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus 42 A~~~~~~~l--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 89 (243)
T 2q7f_A 42 AAEAFTKAI--EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89 (243)
T ss_dssp CCTTHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH--HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 334445555 466778888888899999999999999999999998885
No 102
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.69 E-value=0.088 Score=38.97 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 131 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444444445555555555555555555555555443
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.60 E-value=0.11 Score=33.19 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++.++...|..++.+|+.+.+++.|+++++++|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455555555555555555555555555555554
No 104
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.60 E-value=0.059 Score=37.71 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=19.8
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+|.++.++...|...+.+++.+.+++.|++|++++|.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4555555555554444444555555555555555554
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.38 E-value=0.058 Score=46.72 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
-+|.++.++..+|+.+.++|+.++++++|++|+++||..
T Consensus 529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 457777888888888888888888888888888888864
No 106
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.27 E-value=0.084 Score=47.70 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.|++|.++...|..+..+|+.+++++.|++|+++||..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~ 42 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 42 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666666666653
No 107
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.18 E-value=0.1 Score=39.11 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=27.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..+.++|+.+.+++.|++|++++|..
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 202 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 45666677777777777777777777777777777753
No 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.02 E-value=0.036 Score=45.49 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=39.8
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..|+..+ ..++.++.++..+|..+|++|+.+.+++.|++|++++|...
T Consensus 255 ~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~ 302 (457)
T 1kt0_A 255 ESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302 (457)
T ss_dssp CGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred chhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 3454444 34567888999999999999999999999999999999863
No 109
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.01 E-value=0.17 Score=35.08 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++...|..++.+|+.+.+++.|++|++++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 68 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 44444445555555555555555555555444
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.00 E-value=0.15 Score=30.65 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+.++..+...|..++.+|+.+.+++.|+++++.+|..
T Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35567788888999999999999999999999998863
No 111
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=91.93 E-value=0.15 Score=34.67 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 445556666666666666666666666666666664
No 112
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.88 E-value=0.14 Score=34.59 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=34.2
Q ss_pred CchhhHHHHHHHHHhhhhcc---ccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgD---VeGSIaDFDkAIeLDPR~ 157 (194)
.|.||..+...|..++.+++ .+...+.|++|+++||.-
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~ 42 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN 42 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC
Confidence 57899999999999987777 689999999999999974
No 113
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.85 E-value=0.15 Score=34.01 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 444555556666666666666666666666666654
No 114
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.72 E-value=0.11 Score=47.03 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.7
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+|.++.++...|+.+..+|+.+++++.|++|+++||..
T Consensus 107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45556666666666666666666666666666666653
No 115
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.58 E-value=0.14 Score=38.49 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=35.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.|.++.++...|..+..+|+.+++++.|.+|++++|..
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 57788999999999999999999999999999999975
No 116
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.51 E-value=0.16 Score=35.97 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=20.8
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++...|..++.+|+.+++++.|++|++++|.
T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 3445555555555555555555555555555555554
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.45 E-value=0.13 Score=36.74 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+..+...|+.++.+||.+++++.|+++++.+|.-
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~ 37 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG 37 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 46678899999999999999999999999998863
No 118
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.27 E-value=0.15 Score=42.54 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=19.4
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++.+.|+.++.+|+.+++++.|++|++++|.
T Consensus 70 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444555555555555555555555555555555544
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.24 E-value=0.17 Score=36.91 Aligned_cols=37 Identities=3% Similarity=-0.010 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.++.++...|..+..+|+.+++++.|+++++++|..
T Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 4445555555555555555555555555555555543
No 120
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=91.11 E-value=0.17 Score=36.94 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.8
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
....+.++...|..++.+|+.+++++.|++|++++|.
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 41 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE 41 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence 3445566677888888888888888888888888765
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.10 E-value=0.16 Score=38.33 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.+....|..+..+|+.+++++.|.+++++||..
T Consensus 214 ~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 214 ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 468899999999999999999999999999999999975
No 122
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.08 E-value=0.18 Score=36.78 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=20.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
|.++.++...|..+..+|+.+.+++.|++|++++|
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44455555556666666666666666666666555
No 123
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.08 E-value=0.2 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
.++.++...|..++.+|+.+.+++.|+++++.+|
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 107 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3344444444444444555555555555444444
No 124
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.92 E-value=0.22 Score=34.89 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=36.3
Q ss_pred cCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 115 TGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 115 ~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
.+|.+.|.++.++...|..++.+|+.+.+++.|++|+++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 56 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED 56 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999997
No 125
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.87 E-value=0.13 Score=36.36 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..+..+|+.+.+++.|++|++++|.
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 445556666666666666666666666666666664
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.83 E-value=0.17 Score=41.43 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.++.++...|..++.+||.+++++.|++|++++|.
T Consensus 132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45788899999999999999999999999999999987
No 127
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.67 E-value=0.25 Score=34.25 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 45777888888888888888888888888888888875
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.64 E-value=0.17 Score=41.91 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=37.4
Q ss_pred cccccCCCCCch-hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 111 WDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 111 Wd~~~GG~n~p~-ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|+..+.|...|. .+.+.+++||.+.++|+.+++++.|+++++.+|.
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 444444433254 6678899999999999999999999999999997
No 129
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.2 Score=38.01 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=34.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+|.++.++...|..++.+|+.+++++.|+++++++|.
T Consensus 68 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999983
No 130
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.54 E-value=0.21 Score=36.96 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
++.++...|..++.+|+.+++++.|++|++++|.
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3333344444444444444444444444444443
No 131
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.53 E-value=0.22 Score=35.15 Aligned_cols=39 Identities=8% Similarity=0.122 Sum_probs=25.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.|.++.++...|..+..+|+.+++++.|+++++++|...
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 123 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 355566666666666777777777777777777666543
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.44 E-value=0.19 Score=41.15 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999999999985
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=90.40 E-value=0.23 Score=38.24 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...+.++...|..++++|+.+++++.|++|+++||.-
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 58 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE 58 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 3467889999999999999999999999999999864
No 134
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=89.86 E-value=0.22 Score=37.72 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|+.++..+|..++.+|+.+.+++.|++|++++|..
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 68888888999999999999999999999988854
No 135
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.72 E-value=0.26 Score=34.24 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+...+...|..++.+||.+.+++.|++|++++|.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 37 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE 37 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc
Confidence 3444555666666666666666666666666554
No 136
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.69 E-value=0.12 Score=32.01 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+.++...|+.++.+|+.+.+++.|++|+++.++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 41 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 41 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666665544
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=89.68 E-value=0.22 Score=41.45 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=35.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
.+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus 35 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 35 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 357789999999999999999999999999999999964
No 138
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.68 E-value=0.28 Score=34.58 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 445555555666666666666666666666666654
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=89.65 E-value=0.18 Score=35.38 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=34.2
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+.+.++.++...|..++++|+.+.+++.|++|++++|.
T Consensus 272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 367888999999999999999999999999999999874
No 140
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.44 E-value=0.25 Score=37.29 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.++.+....|..+.++||.+++++.|.+|+++||.-
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 150 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN 150 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc
Confidence 5677778888999999999999999999999999864
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.42 E-value=0.24 Score=33.91 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=34.5
Q ss_pred CCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 116 GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
+|.+.+..+.++...|..++.+|+.+.+++.|++|+++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566888999999999999999999999999999998
No 142
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.38 E-value=0.32 Score=32.13 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
...+..+..-|-.+|++|+++.++.-+.+|++++|.-.
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45566777889999999999999999999999999863
No 143
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.06 E-value=0.25 Score=39.89 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+.++.++...|..++++|+.+++++.+++|+++||.
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4566777888899999999999999999999999995
No 144
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.88 E-value=0.26 Score=40.23 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=19.5
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+|.++.++...|..+..+|+.+++++.|++|++++|.
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 89 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3444555555555555555555555555555555554
No 145
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.68 E-value=0.34 Score=33.14 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 117 G~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
|.+.+..+.++...|..+..+|+.+.+++.|.+|+++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999998
No 146
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.80 E-value=0.37 Score=39.33 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..+|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3457788888888999999999999999999999999864
No 147
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.38 E-value=0.42 Score=35.66 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
++.++..+...|..++.+||.+.+++.|++|++++|.-
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~ 81 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED 81 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC
Confidence 35677788889999999999999999999999998863
No 148
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=87.21 E-value=0.43 Score=37.53 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.++...|..+.++|+++++++.|+++++++|
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 44444555555555555555555555555554
No 149
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.72 E-value=0.4 Score=35.90 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+.++...|..+..+||.+++++.|++|+++||....
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 346788999999999999999999999999998654
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=86.25 E-value=0.59 Score=34.99 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=28.8
Q ss_pred CCchhhH-HHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~-aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..|.++. +++..|..+.++|+++++++.|++|++++|.
T Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 4466665 7777787778888888888888888888774
No 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=86.13 E-value=0.5 Score=35.37 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHHhhh-hccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFr-qgDVeGSIaDFDkAIeLDPR~ 157 (194)
|.++.+++..+...+. +|+.+.+++.|++|++++|..
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4445555544444343 699999999999999999864
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=85.91 E-value=0.58 Score=35.74 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=34.8
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
..|.++.++...|..+..+|+.+.+++.|++|++.+|..
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh
Confidence 356777888888999999999999999999999999974
No 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.49 E-value=0.2 Score=39.27 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
..|+... ...+..+.++...|..+|++|+.+.+++.|.+|++++|...
T Consensus 166 ~~~~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 213 (338)
T 2if4_A 166 ARSDMTV--EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213 (338)
T ss_dssp TTTBCCH--HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred ccccCCH--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence 3565555 44567888889999999999999999999999999999754
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.99 E-value=0.7 Score=33.04 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhh
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIe 152 (194)
+++|.++...|..++.+||.+.+++.|.+|++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554
No 155
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.38 E-value=0.37 Score=36.07 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
...+.++...|+.+..+|+.+++++.|++|++++|+.
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3457888899999999999999999999999999875
No 156
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=83.38 E-value=0.89 Score=35.73 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++..+...|..+.+.|+++++++.|+++++++|.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 455556666666666666666666666666666654
No 157
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=82.59 E-value=0.93 Score=34.62 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++.++...|..+.++|+.+++++.|+++++++|..
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 6778888999999999999999999999999999864
No 158
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=82.13 E-value=0.85 Score=39.72 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.+|..+..-++..+.+||++++++.+++|++++|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 555666666666666666666666666666666653
No 159
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=81.63 E-value=0.77 Score=28.34 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.++...|..++.+|+.+.+++.|++|+++.++.
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4566777888999999999999999998887764
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=80.88 E-value=0.97 Score=30.00 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=32.3
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
+.+..+.++...|+.+..+||.+++++.|++|+++..
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA 97 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4466778888899999999999999999999999943
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=79.89 E-value=0.73 Score=31.94 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.+..+.++...|..++.+|+.+.+++.|++|+++.++.
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 345667888899999999999999999999999998875
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=79.55 E-value=1.2 Score=38.70 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=20.9
Q ss_pred CCchhhHHHHHHHHHhhhhc--cccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqg--DVeGSIaDFDkAIeLDPR 156 (194)
.+|.+..++--||..+-+.+ +.++.++.+|+|+++|||
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 34555555555555555555 445555555555555554
No 163
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=79.38 E-value=0.72 Score=33.58 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.+..+.++...|..++.+|+.+.+++.|++|+++.|..
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 446678888999999999999999999999999998875
No 164
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=75.96 E-value=3 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=29.5
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+..+.++...|+.++.+||.+++++.+++|+++.++.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 4556666777888888888888888888888888765
No 165
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=74.46 E-value=2.1 Score=32.14 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
.+.++...|..+..+||.+.+++.|++|+ ++|.+.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 34577788999999999999999999999 999865
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=72.81 E-value=3.5 Score=27.25 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
...+.++...|+.+..+|+.+++++.|++|+++..+
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 58 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK 58 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999996443
No 167
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=72.69 E-value=1.6 Score=37.94 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKIS 160 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy 160 (194)
++.+++-.|..+.-.|+.++.++.|++|+.|+|....|
T Consensus 309 s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 309 SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 35566777999999999999999999999999987543
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=72.03 E-value=2.4 Score=36.77 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=35.6
Q ss_pred CCCchhhHHHHHHHHHhhhh--------------ccccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQ--------------GDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrq--------------gDVeGSIaDFDkAIeLDPR~ 157 (194)
..++.|..++--||..+... +.+++.++.+|+||++||.-
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 67899999999999998885 67899999999999999973
No 169
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=70.81 E-value=1.6 Score=32.45 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+..+.++...|..++.+|+.+++++.|++|+++.++.
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 4455677777888888888888888888888887763
No 170
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=69.87 E-value=3.7 Score=29.22 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhh----hccccccHHHHHHHhhc
Q 029343 124 AVVAIRRGMLLFR----QGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 124 a~aaIRRGM~lFr----qgDVeGSIaDFDkAIeL 153 (194)
+.++...|+.++. ++|.+.+++.|++|+++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 3334444555555 55555555555555554
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=68.69 E-value=2.3 Score=31.36 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+.+..+.++.--|..++.+|+.+.+++-|++|+++++...
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 4566777888899999999999999999999999987653
No 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=68.39 E-value=4 Score=32.79 Aligned_cols=37 Identities=0% Similarity=-0.048 Sum_probs=30.7
Q ss_pred CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.|.++.++...|..+.++|+++.+++.|++|++++|.
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 5677777778888888889999999999999988875
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=67.61 E-value=3.3 Score=31.13 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
..+.++...|+.+..+|+.+++++.|++|+++.++
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888887554
No 174
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=67.22 E-value=3.7 Score=33.33 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCCchhhHHHHHHHHHhhhhcc------ccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGD------VVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgD------VeGSIaDFDkAIeLDPR~ 157 (194)
..+++|-.|.--||..++..+. +++.++.+|+||++||+-
T Consensus 174 ~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 174 DTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 4678899999999999999887 899999999999999973
No 175
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=65.27 E-value=3.1 Score=31.47 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=35.9
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+.+..+.++...|..++.+|+.+.+++.|++|+++.+....
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 44567888999999999999999999999999999887643
No 176
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=63.13 E-value=6.3 Score=29.91 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=27.6
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.+..+.++..-|..++.+|+.+.+++.|++|+++.++
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33555666677788888888888888888888887554
No 177
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=61.85 E-value=6.2 Score=31.71 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHhhh-------hcccc-------ccHHHHHHHhh-cCcc
Q 029343 120 NSREAVVAIRRGMLLFR-------QGDVV-------GSVAEFDKAIE-LDPR 156 (194)
Q Consensus 120 ~p~ea~aaIRRGM~lFr-------qgDVe-------GSIaDFDkAIe-LDPR 156 (194)
+|.++.++...|+.+.+ +||++ ++++.|++|++ ++|.
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 35678888888988886 79998 89999999997 7885
No 178
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=61.68 E-value=6.5 Score=28.05 Aligned_cols=34 Identities=12% Similarity=-0.081 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP 155 (194)
++|.+...-|+.++.++|.+.+++-|.+|.+.+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~ 49 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD 49 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 6788888999999999999999999999988753
No 179
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=61.40 E-value=5 Score=30.32 Aligned_cols=34 Identities=6% Similarity=0.053 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD 154 (194)
+..+.++...|..++.+|+.+.+++.|++|+++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5556666666777777777777777777777663
No 180
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=57.39 E-value=5.1 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
+.++...|..++.+|+.+.+++-|++|+++++.
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 367778899999999999999999999999754
No 181
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=56.89 E-value=8.7 Score=28.24 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=29.7
Q ss_pred chhhHHHHHHHHHhhhhcc-ccccHHHHHHHhhcCc
Q 029343 121 SREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDP 155 (194)
Q Consensus 121 p~ea~aaIRRGM~lFrqgD-VeGSIaDFDkAIeLDP 155 (194)
..-+.++...|+.++++|+ .+.+++.|.+|+++..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4447788899999999995 6999999999998754
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=56.75 E-value=8 Score=32.23 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=26.4
Q ss_pred CCchhhHHHHHHHHHhhhhcc-ccccHHHHHHHhhcCcc
Q 029343 119 NNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPR 156 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgD-VeGSIaDFDkAIeLDPR 156 (194)
-.|+|..+.--||......|. .++.++.+|++|+.||+
T Consensus 139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 456666677777777777776 46777777777777775
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=56.68 E-value=6.5 Score=32.78 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=35.8
Q ss_pred CCCchhhHHHHHHHHHhhhh--------------ccccccHHHHHHHhhcCcccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQ--------------GDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrq--------------gDVeGSIaDFDkAIeLDPR~k 158 (194)
..+|+|.++.--||..+... +.++..++.+++||+.||.-.
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 46799999999999998887 567899999999999999754
No 184
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=55.00 E-value=5.9 Score=30.07 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
+.+..+.++...|..++.+|+.+.+++.|++|+++.++...
T Consensus 136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 34667888889999999999999999999999999887554
No 185
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=54.54 E-value=10 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 125 ~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
.+..-+|+..+.+||.+++++.+++|++..|.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 46 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPP 46 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 44456677777777777777777777777653
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.92 E-value=9.5 Score=28.63 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp 159 (194)
.|.+.+..+..++.+||.+++++.|-++++.+|...-
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~ 39 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSS 39 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSS
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccch
Confidence 4677888999999999999999999999999987543
No 187
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=52.63 E-value=9.6 Score=30.89 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=39.8
Q ss_pred cccccccCCCCCchhhHHHHHHHHHhhhhc--cccccHHHHHHHhhcCcc
Q 029343 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqg--DVeGSIaDFDkAIeLDPR 156 (194)
...+.++ .-||.+..+.-.||..+...+ +.++.++-+|++++.+|.
T Consensus 54 ~~t~~~L--~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 54 HITELGI--NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHH--HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH--HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 3455566 678899999999999999999 999999999999999985
No 188
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=49.73 E-value=14 Score=27.05 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL 153 (194)
..+.++..-|+.++.+|+.+.+++-|++|+++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34667888899999999999999999999955
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=48.06 E-value=12 Score=31.70 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=35.8
Q ss_pred CCCchhhHHHHHHHHHhhhhcc-------ccccHHHHHHHhhcCccc
Q 029343 118 NNNSREAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrqgD-------VeGSIaDFDkAIeLDPR~ 157 (194)
..+++|..|.--||..+++.++ +++.++.+++||++||.-
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 4679999999999999999987 789999999999999963
No 190
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=47.14 E-value=14 Score=31.30 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=32.8
Q ss_pred CCCchhhHHHHHHHHHhhhh-c-cccccHHHHHHHhhcCcc
Q 029343 118 NNNSREAVVAIRRGMLLFRQ-G-DVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 118 ~n~p~ea~aaIRRGM~lFrq-g-DVeGSIaDFDkAIeLDPR 156 (194)
..+|.+..+.--||..+.+. + +.++.++-+|++++.||+
T Consensus 117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 56788888888888888887 7 888888899999998886
No 191
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=42.68 E-value=18 Score=27.70 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
....--.|...++.+|.+.++.-||++++.||.-
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3444455788899999999999999999999943
No 192
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=37.38 E-value=18 Score=28.70 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhhh----hccccccHHHHHHHhhcCc
Q 029343 123 EAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 123 ea~aaIRRGM~lFr----qgDVeGSIaDFDkAIeLDP 155 (194)
++.++..-|..++. .+|.+.+++-|++|++.+|
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 45555666777777 7888888888888888874
No 193
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=36.36 E-value=22 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHhhh----hccccccHHHHHHHhhcCc
Q 029343 122 REAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 122 ~ea~aaIRRGM~lFr----qgDVeGSIaDFDkAIeLDP 155 (194)
+++.+...-|+.++. ..|.+.+++-|.+|.+.+|
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 355555666666665 5666666666666666665
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=34.81 E-value=18 Score=29.81 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (194)
Q Consensus 130 RGM~lFrqgDVeGSIaDFDkAIeLDPR~k 158 (194)
+||-. +-+|-+.+.+.|++|.++||.+-
T Consensus 13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~~ 40 (282)
T 4f3v_A 13 SAVSM-LPMSEARSLDLFTEITNYDESAC 40 (282)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcc-cCCCHHHHHHHHHHHHHhChhhh
Confidence 44443 68999999999999999999874
No 195
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=28.40 E-value=34 Score=27.63 Aligned_cols=38 Identities=0% Similarity=0.046 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHhhhhc---cccccHHHHHHHhhcCccccc
Q 029343 122 REAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKI 159 (194)
Q Consensus 122 ~ea~aaIRRGM~lFrqg---DVeGSIaDFDkAIeLDPR~kp 159 (194)
++|.++..-|+.+..+| |.+.+++-|.+|.+.+|..-.
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence 45568888899999999 999999999999999887654
No 196
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=26.69 E-value=41 Score=28.86 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhhhh-----ccccccHHHHHHHhhcCccc
Q 029343 123 EAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 123 ea~aaIRRGM~lFrq-----gDVeGSIaDFDkAIeLDPR~ 157 (194)
+..++.--|+.+.+. ||.+-+.+-|++|++++|.-
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 445566668777775 89999999999999999843
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=26.07 E-value=47 Score=28.17 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccccCC
Q 029343 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGK 162 (194)
Q Consensus 117 G~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy~~ 162 (194)
|.+.|.=+..+-.-|..+..||+.++++.-+.+|++. +.+.+|.
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i--~~~~lG~ 418 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI--MEVAHGK 418 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHTCT
T ss_pred CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHcCC
Confidence 4466777777778899999999999999999999886 3344443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=25.98 E-value=57 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHhhh----hccccccHHHHHHHhhcCc
Q 029343 122 REAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 122 ~ea~aaIRRGM~lFr----qgDVeGSIaDFDkAIeLDP 155 (194)
+++.+...-|+.+.. ..|.+.+++-|.+|.+++.
T Consensus 91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 356666666777777 7777777777777777643
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=24.97 E-value=57 Score=21.01 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|.....-|...|.++|.+.++.-|.+|+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~ 37 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDE 37 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc
Confidence 455667799999999999999999999997543
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=24.44 E-value=64 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhhh----hccccccHHHHHHHhhcC
Q 029343 122 REAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELD 154 (194)
Q Consensus 122 ~ea~aaIRRGM~lFr----qgDVeGSIaDFDkAIeLD 154 (194)
+++.+...-|+.+.. ..|.+.+++-|.+|.+..
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 91 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN 91 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC
Confidence 578888888999888 889999999999998864
No 201
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.89 E-value=59 Score=22.68 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (194)
Q Consensus 128 IRRGM~lFrqgDVeGSIaDFDkAIeLDPR 156 (194)
|..|=.+.++|+++++++-|=+|+..=|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46688999999999999999999987654
No 202
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=20.99 E-value=23 Score=26.18 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=38.0
Q ss_pred ccccccCCCCCchhhHHHHHHHHHhhhh---ccccccHHHHHHHhhcCc
Q 029343 110 IWDALTGGNNNSREAVVAIRRGMLLFRQ---GDVVGSVAEFDKAIELDP 155 (194)
Q Consensus 110 iWd~~~GG~n~p~ea~aaIRRGM~lFrq---gDVeGSIaDFDkAIeLDP 155 (194)
-+|.++-|+-+++-.....++|+.-+.- +.|+..|+.|...++-+|
T Consensus 67 g~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~ 115 (145)
T 1p90_A 67 DCQVLYVVSIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSP 115 (145)
T ss_dssp TCSEEEESBCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCC
T ss_pred CCCEEEECCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCC
Confidence 4788887777788888888999998874 789999999988887776
No 203
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.79 E-value=48 Score=29.77 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (194)
Q Consensus 124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~ 157 (194)
+.+.+.++=..|..||.+-+.+--|.++..||.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~ 482 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDN 482 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3455667778899999999999999999999974
Done!