BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029344
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 82 HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRSI 127
H D+N ITLL E GL++ +++ Q W I P G N S
Sbjct: 191 HGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDXLERLTNNVLPST 246
Query: 128 LHRVV------FGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYP-TIKTGDYILSRF 180
+HRVV G RYST FL + DY I+ L C + +NP +YP +I +++ R
Sbjct: 247 VHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRL 306
Query: 181 RQL 183
R++
Sbjct: 307 REI 309
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 82 HCDLNFITLL-ATDEIWGLQICREKNAQPQLWEAIPPVK--------------GNGAFRS 126
H D I LL D++ GLQ+ ++ W +PP + NG ++S
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNLGDQLEVITNGKYKS 231
Query: 127 ILHRVVFGKE--RYSTGLFLCPSHDYVIECLPTC---KSEDNPPKYPTIKTGDY 175
+ HRV+ K+ R S F P D VI P ++E+N YP DY
Sbjct: 232 VXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 82 HCDLNFITLLATDEIWGLQICREKNAQPQLW---EAIP-----------PVKGNGAFRSI 127
H D++ +T + + + GLQ+ E W + +P + NG ++SI
Sbjct: 232 HTDVSALTFILHNXVPGLQLFYEGK-----WVTAKCVPDSIVXHIGDTLEILSNGKYKSI 286
Query: 128 LHRVVFGKE--RYSTGLFLCPSHD-YVIECLPTCKSEDNPPKYP 168
LHR + KE R S +F P D V++ LP S ++P K+P
Sbjct: 287 LHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFP 330
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 121 NGAFRSILHRVVFGKE--RYSTGLFLCPSHD-YVIECLPTCKSEDNPPKYP 168
NG ++SILHR + KE R S +F P D V++ LP S ++P K+P
Sbjct: 280 NGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFP 330
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 121 NGAFRSILHRVVFGKE--RYSTGLFLCPSHD-YVIECLPTCKSEDNPPKYP 168
NG ++SILHR + KE R S +F P D V++ LP S ++P K+P
Sbjct: 279 NGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFP 329
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 38/123 (30%)
Query: 82 HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGN--------------GAFRSI 127
H D+N IT+L T GLQ+ A+ W +P GN G F S
Sbjct: 174 HEDINLITVLPTANEPGLQV----KAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPST 229
Query: 128 LHRVV------FGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFR 181
HRV+ K R S LFL P V+ T S Y+ R R
Sbjct: 230 SHRVINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADS--------------YLXERLR 275
Query: 182 QLA 184
+L
Sbjct: 276 ELG 278
>pdb|3T30|B Chain B, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|E Chain E, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|D Chain D, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|A Chain A, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|C Chain C, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|H Chain H, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|I Chain I, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|J Chain J, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|F Chain F, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|G Chain G, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
Length = 110
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 91 LATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDY 150
+ T +WG ++ +E+ W P ++G + R +LH + G++ +
Sbjct: 1 MVTTVLWGCELSQERRT----WTFRPQLEGKQSCRLLLHTICLGEK--------AKEEMH 48
Query: 151 VIECLPTCKSEDN 163
+E LP ED
Sbjct: 49 RVEILPPANQEDK 61
>pdb|1RKU|A Chain A, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKU|B Chain B, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKV|A Chain A, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
pdb|1RKV|B Chain B, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
Length = 206
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 26 DVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDL 85
D+ + A LK + G + + WL+ E F + ++ D + + P L
Sbjct: 60 DIQEVIATLKPLEG--AVEFVDWLR-----ERFQVV-------ILSDTFYEFSQPLMRQL 105
Query: 86 NFITLLA-------TDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERY 138
F TLL +D + G Q+ R+K+ P + AF+S+ +RV+ + Y
Sbjct: 106 GFPTLLCHKLEIDDSDRVVGYQL-RQKD---------PKRQSVIAFKSLYYRVIAAGDSY 155
Query: 139 STGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRF 180
+ L +H ++ P + P++P + T + + F
Sbjct: 156 NDTTMLSEAHAGILFHAPENVIREF-PQFPAVHTYEDLKREF 196
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 268
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 58 FSMARIFGLQQVI----QDNNFSSNPPPHCDLNFITLLATDEI 96
F +A FG +Q+I +D +++NP D FI ++ DE+
Sbjct: 172 FLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEM 214
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 112 WEAIPPVKGNGAFR--------SILHRVVFGKERYST----GLFLCPSHDYVIECLPTCK 159
W+ + G G F + L V+ GK S F DYV+E P+C+
Sbjct: 294 WQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCR 353
Query: 160 SEDNPP 165
+ N P
Sbjct: 354 PDRNEP 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,910,643
Number of Sequences: 62578
Number of extensions: 223143
Number of successful extensions: 341
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 12
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)