BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029345
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
+ + + S + AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +HRI S + E++
Sbjct: 27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI 86
Query: 104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
L ++E L+ V+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T
Sbjct: 87 LTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 33 SGTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKK 87
G ++ A R R I +D+ + Y NEL +++ ER+VK SRDITI SK+
Sbjct: 5 GGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKR 64
Query: 88 VIFQVHRIS--RDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEY 145
+IF +H I + NKE+VL++A L + + EL+ D ++ R +YSPG+QE+
Sbjct: 65 IIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEF 124
Query: 146 VEAATFCKF 154
++A T+ ++
Sbjct: 125 IQAYTYXEY 133
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 63 YLNEL---NEKRERVVKSSRDITINSKKVIFQVHRIS--RDNKEEVLKKAEADLEAVKDQ 117
Y NEL +++ ER+VK SRDITI SK++IF +H I + NKE+VL++A L +
Sbjct: 8 YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV 67
Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKF 154
+ EL+ D ++ R +YSPG+QE++EA T+ ++
Sbjct: 68 NFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEY 104
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 59 NYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI------SRDNK 100
N + + +L RE+++ + DI++ K I HRI S+DNK
Sbjct: 152 NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNK 199
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 53 MKDAFANYAG--YLNELNEKRERVVKSSRDI-TINSKKVIFQVHRISRDNKEEVLKKAEA 109
MKD +NY+ YLN+ +++++ + R I T+N K ++ +DNK LKK E
Sbjct: 6 MKDILSNYSNLIYLNKYVKEKDKYINDYRIIRTLNQGK-FNKIILCEKDNKFYALKKYEK 64
Query: 110 DL 111
L
Sbjct: 65 SL 66
>pdb|3UPI|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPI|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
Length = 585
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 41 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 84
>pdb|3QGD|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGD|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGE|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGE|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGG|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3QGG|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3Q0Z|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
pdb|3Q0Z|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
Length = 574
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 42 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 85
>pdb|3CSO|A Chain A, Hcv Polymerase In Complex With A 1,5 Benzodiazepine
Inhibitor
pdb|3CSO|B Chain B, Hcv Polymerase In Complex With A 1,5 Benzodiazepine
Inhibitor
pdb|3GOL|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor (R)- 11d
pdb|3GOL|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor (R)- 11d
pdb|3GNV|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 1b
pdb|3GNV|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 1b
pdb|3GNW|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 4c
pdb|3GNW|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 4c
pdb|3HKY|A Chain A, Hcv Ns5b Polymerase Genotype 1b In Complex With 1,5
Benzodiazepine 6
pdb|3HKY|B Chain B, Hcv Ns5b Polymerase Genotype 1b In Complex With 1,5
Benzodiazepine 6
Length = 581
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 44 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 87
>pdb|2XHV|A Chain A, Hcv-J4 Ns5b Polymerase Point Mutant Orthorhombic Crystal
Form
pdb|2XHV|B Chain B, Hcv-J4 Ns5b Polymerase Point Mutant Orthorhombic Crystal
Form
Length = 579
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 42 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 85
>pdb|2XHU|A Chain A, Hcv-J4 Ns5b Polymerase Orthorhombic Crystal Form
pdb|2XHU|B Chain B, Hcv-J4 Ns5b Polymerase Orthorhombic Crystal Form
pdb|2XHW|A Chain A, Hcv-J4 Ns5b Polymerase Trigonal Crystal Form
Length = 579
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 42 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 85
>pdb|1NB4|A Chain A, Hc-J4 Rna Polymerase Apo-Form
pdb|1NB4|B Chain B, Hc-J4 Rna Polymerase Apo-Form
pdb|1NB6|A Chain A, Hc-J4 Rna Polymerase Complexed With Utp
pdb|1NB6|B Chain B, Hc-J4 Rna Polymerase Complexed With Utp
pdb|1NB7|A Chain A, Hc-J4 Rna Polymerase Complexed With Short Rna Template
Strand
pdb|1NB7|B Chain B, Hc-J4 Rna Polymerase Complexed With Short Rna Template
Strand
Length = 570
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 41 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 84
>pdb|4DRU|A Chain A, Hcv Ns5b In Complex With Macrocyclic Indole Inhibitor
pdb|4DRU|B Chain B, Hcv Ns5b In Complex With Macrocyclic Indole Inhibitor
Length = 563
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 41 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 84
>pdb|3MWV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWW|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWW|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase
pdb|4GMC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Thumb Inhibitor
pdb|4GMC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Thumb Inhibitor
Length = 576
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 41 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 84
>pdb|3LKH|A Chain A, Inhibitors Of Hepatitis C Virus Polymerase: Synthesis And
Characterization Of Novel
6-Fluoro-N-[2-Hydroxy-1(S)-Benzam
pdb|3LKH|B Chain B, Inhibitors Of Hepatitis C Virus Polymerase: Synthesis And
Characterization Of Novel
6-Fluoro-N-[2-Hydroxy-1(S)-Benzam
pdb|3SKA|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKA|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKE|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKE|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKH|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKH|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3UPH|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPH|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3TYQ|A Chain A, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYQ|B Chain B, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYV|A Chain A, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYV|B Chain B, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
Length = 576
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 41 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 84
>pdb|3FQL|A Chain A, Hepatitis C Virus Polymerase Ns5b (Con1 1-570) With
Hcv-796 Inhibitor
Length = 578
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 49 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 92
>pdb|1YVF|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00729145
pdb|1Z4U|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00799585
Length = 577
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 77 SSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYIS 120
+SR ++ KKV F ++ D+ +VLK+ +A VK + +S
Sbjct: 42 TSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,376,034
Number of Sequences: 62578
Number of extensions: 142244
Number of successful extensions: 543
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 58
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)