Query 029345
Match_columns 194
No_of_seqs 132 out of 390
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3066 Translin-associated pr 100.0 7.1E-35 1.5E-39 242.5 10.5 150 42-193 24-174 (271)
2 PF01997 Translin: Translin fa 100.0 4E-32 8.7E-37 225.5 10.6 123 68-193 1-123 (200)
3 PRK14562 haloacid dehalogenase 100.0 1.5E-30 3.3E-35 217.1 13.7 118 53-193 2-119 (204)
4 KOG3067 Translin family protei 99.9 3.4E-25 7.5E-30 181.1 12.9 139 54-194 5-145 (226)
5 COG2178 Predicted RNA-binding 99.9 4.5E-23 9.8E-28 169.9 12.1 115 54-193 2-118 (204)
6 KOG4098 Molecular chaperone Pr 48.7 1.4E+02 0.0029 23.8 8.3 44 51-95 18-71 (140)
7 PF09543 DUF2379: Protein of u 41.1 56 0.0012 25.4 4.3 47 69-115 55-101 (121)
8 TIGR00496 frr ribosome recycli 35.4 2.5E+02 0.0053 22.9 8.6 99 24-124 37-164 (176)
9 PF01765 RRF: Ribosome recycli 34.3 2.4E+02 0.0051 22.4 9.0 99 24-124 28-155 (165)
10 TIGR02267 Myxococcus xanthus p 32.2 94 0.002 24.1 4.3 44 71-114 59-102 (123)
11 COG0233 Frr Ribosome recycling 31.8 3.1E+02 0.0066 22.9 8.5 101 24-126 48-177 (187)
12 PF15642 Tox-ODYAM1: Toxin in 29.7 3.9E+02 0.0084 24.0 8.2 26 58-83 119-144 (385)
13 cd07591 BAR_Rvs161p The Bin/Am 29.5 3.4E+02 0.0074 22.8 11.9 58 121-193 166-224 (224)
14 cd07612 BAR_Bin2 The Bin/Amphi 29.2 3.5E+02 0.0077 22.9 11.7 92 55-149 91-188 (211)
15 PF10158 LOH1CR12: Tumour supp 28.7 2.8E+02 0.0061 21.6 6.8 27 142-168 89-115 (131)
16 PF01372 Melittin: Melittin; 28.3 33 0.00071 19.4 0.9 12 4-15 13-24 (26)
17 PRK00083 frr ribosome recyclin 26.4 3.7E+02 0.0079 22.1 8.6 99 24-124 46-173 (185)
18 PF04380 BMFP: Membrane fusoge 26.0 2.4E+02 0.0052 19.8 6.2 60 51-116 6-71 (79)
19 cd07611 BAR_Amphiphysin_I_II T 25.8 4.1E+02 0.0089 22.5 11.9 96 52-150 88-189 (211)
20 cd00520 RRF Ribosome recycling 24.7 3.8E+02 0.0083 21.7 8.2 99 24-124 42-169 (179)
21 PF15011 CK2S: Casein Kinase 2 24.3 2.2E+02 0.0047 23.0 5.5 36 51-86 67-102 (168)
22 KOG0201 Serine/threonine prote 23.8 45 0.00098 31.5 1.5 21 130-150 227-247 (467)
23 COG4026 Uncharacterized protei 22.8 5.1E+02 0.011 22.6 8.7 36 49-84 129-164 (290)
24 cd03345 eu_TyrOH Eukaryotic ty 21.9 1E+02 0.0022 27.6 3.3 54 139-193 81-140 (298)
25 PF07794 DUF1633: Protein of u 21.6 5.8E+02 0.013 24.9 8.3 41 57-97 613-653 (790)
26 PRK05685 fliS flagellar protei 21.2 3.8E+02 0.0083 20.5 7.6 24 100-124 103-126 (132)
27 cd00361 arom_aa_hydroxylase Bi 20.9 74 0.0016 27.2 2.2 54 139-193 26-81 (221)
No 1
>KOG3066 consensus Translin-associated protein X [General function prediction only]
Probab=100.00 E-value=7.1e-35 Score=242.50 Aligned_cols=150 Identities=45% Similarity=0.647 Sum_probs=140.8
Q ss_pred ccccCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHHHHH
Q 029345 42 KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR-DNKEEVLKKAEADLEAVKDQYIS 120 (194)
Q Consensus 42 ~~~~~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~-~~~~~~l~~A~~~l~~v~~~~~~ 120 (194)
+..++|++++++++.|.+|+++|+++||+||+|+|+|||||..||++||+|||..+ .+.++++.++...+..++.+.+.
T Consensus 24 qkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f~ 103 (271)
T KOG3066|consen 24 QKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEFE 103 (271)
T ss_pred ccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999987 56788999999999999999999
Q ss_pred HHHHhhcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 121 RLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 121 ~La~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
+|+.+|.|.++|+|++++++|+||||||++|++|+.+|+|.+.+|++..+.++..+ .++.|++-||++|++
T Consensus 104 ~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGva 174 (271)
T KOG3066|consen 104 SLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVA 174 (271)
T ss_pred HHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999877665444 679999999999986
No 2
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=99.97 E-value=4e-32 Score=225.54 Aligned_cols=123 Identities=43% Similarity=0.751 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhhchhHHHHHH
Q 029345 68 NEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVE 147 (194)
Q Consensus 68 ~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~ry~~~~s~~lQEyvE 147 (194)
||+||+|+|+||||++.||++||+|||++.+++.+++++|++.++++++ .++.++ ++++.+||+|++.|++|+|||||
T Consensus 1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE 78 (200)
T PF01997_consen 1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998888999999999999996 799999 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 148 AATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 148 A~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
|++|++||++|+|+|++|+++ +++...+....|+|+++|||+||+
T Consensus 79 a~~f~~~l~~~~L~t~~ev~~-~l~~~~~~~~~~~v~~~dYL~Gl~ 123 (200)
T PF01997_consen 79 AISFYHYLETGRLLTPEEVGE-ILGFSEDDEDRFHVTPEDYLLGLA 123 (200)
T ss_dssp HHHHHHHHHHSSS--HHHHHH-HCTCBSSTSCSSB--HHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHH-HHhhccccccceecCHHHHHHHHH
Confidence 999999999999999999998 556766668889999999999996
No 3
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=217.10 Aligned_cols=118 Identities=26% Similarity=0.301 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 029345 53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW 132 (194)
Q Consensus 53 v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~ 132 (194)
+.++|++++++||++|++||+|+++||||++.||++||.+||++..+ |.+.+.++.+ .+.+|++.+++.++|
T Consensus 2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~~~-------a~~~l~~a~~-~~~~l~~~~~~~~~~ 73 (204)
T PRK14562 2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEE-------AEKLLKEAEE-LVKELKELLKDHPEL 73 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-------HHHHHHHHHH-HHHHHHHHhccCchh
Confidence 46899999999999999999999999999999999999999985444 4444444444 355666789999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 133 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 133 ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
+|++.|++++||||||++|++|+++|+|||++| |+|+++|||+|||
T Consensus 74 ~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~ 119 (204)
T PRK14562 74 YYAGYVGTALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLA 119 (204)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHH
Confidence 999999999999999999999999999999999 6899999999996
No 4
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=99.93 E-value=3.4e-25 Score=181.08 Aligned_cols=139 Identities=21% Similarity=0.340 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 029345 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQGTDF 131 (194)
Q Consensus 54 ~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y 131 (194)
.+||.++++.+|+++++||+|++.+++|+..+|.+...|+-+|+. ..++.|..|++.+..++. ++..|++..+..+|
T Consensus 5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy 83 (226)
T KOG3067|consen 5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence 589999999999999999999999999999999999999999985 478899999999999886 79999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhccccC
Q 029345 132 WKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA 194 (194)
Q Consensus 132 ~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~~ 194 (194)
|||++.|.+.+|..|+..+|.+||++|.|+|+++|.+ ++|++.+..++||++++|||.|+++
T Consensus 84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~e-ilgl~p~~s~~FhLdvedyl~gvl~ 145 (226)
T KOG3067|consen 84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTE-ILGLEPDRSEGFHLDVEDYLSGVLF 145 (226)
T ss_pred EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHH-HhcCCccccccceeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7899888888999999999999874
No 5
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.5e-23 Score=169.90 Aligned_cols=115 Identities=32% Similarity=0.441 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 029345 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWK 133 (194)
Q Consensus 54 ~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~r 133 (194)
.+.+.++++.|+++++.||+++++||+|++.|+.+|+++||++.+.+...+++|.+.+.+++ ..+. +|+.
T Consensus 2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk--------~~l~--~~pe 71 (204)
T COG2178 2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLK--------RLLA--GFPE 71 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------HHHh--hhHH
Confidence 46799999999999999999999999999999999999999976655555666555554444 4666 4666
Q ss_pred hhh--hhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 134 LRR--AYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 134 y~~--~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
+++ ..++|+||||||.+|+.|+.++.+|+++| ++|++.+||+|||
T Consensus 72 l~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~E---------------L~V~~~~YilGl~ 118 (204)
T COG2178 72 LYFAGFVTTALQEYVEATLLYSILKDGRLPSPEE---------------LGVPPIAYILGLA 118 (204)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHH---------------cCCCHHHHHHHHH
Confidence 655 55999999999999999999999999999 6899999999986
No 6
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=48.71 E-value=1.4e+02 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHhhH--------HHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Q 029345 51 SYMKDAFANYAGYLNEL--------NEKRE--RVVKSSRDITINSKKVIFQVHRI 95 (194)
Q Consensus 51 ~~v~~iF~~~~~~Ld~~--------~d~RE--~Iik~sRdIt~~Sk~iIf~LHR~ 95 (194)
..+...|..+++++... .|+|| .+++.-.|++. .|++-+.++-+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp-~RKCfRmIgGv 71 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDP-TRKCFRMIGGV 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh-hhHHHHHhccc
Confidence 46677787777776432 34444 45555555543 45555555554
No 7
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=41.06 E-value=56 Score=25.40 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 029345 69 EKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVK 115 (194)
Q Consensus 69 d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~ 115 (194)
..-.=+.+++|.|..-|+++..++||...-...--++.|++.+.++-
T Consensus 55 ~A~~LL~ei~rRIr~GS~RL~~al~r~~~~~daGD~dgARq~m~dvL 101 (121)
T PF09543_consen 55 GAAALLREIRRRIRDGSRRLSRALHRMYRLRDAGDLDGARQEMRDVL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 33444667778888889999999999854322223556666665543
No 8
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=35.36 E-value=2.5e+02 Score=22.92 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=56.9
Q ss_pred Ccccccccccchhhhhhhccc--cCCCCcchHHHHHHHHHHH----------------H-hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRP--RTITTESYMKDAFANYAGY----------------L-NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~iF~~~~~~----------------L-d~~~d~RE~Iik~sRdIt~~ 84 (194)
..+.||.+++...+.. .+. -++-..+.+..+-..+... + .=-.+.|++++|.++.+...
T Consensus 37 g~~~pL~~lA~vsv~~--~~~l~I~p~D~~~~~~I~kAI~~s~lglnP~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~ 114 (176)
T TIGR00496 37 GAPTPLRQLASVTVPD--ARTLVIQPFDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQ 114 (176)
T ss_pred CCcccHHHceeeecCC--CCEEEEecCChhhHHHHHHHHHHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4467888765543322 122 1111245566666666641 0 11237799999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|..|+.+.|-... -.+.....+.+.++.+.+.++..+-+
T Consensus 115 aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~ 164 (176)
T TIGR00496 115 AKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDE 164 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988875221 01233444555565555554444443
No 9
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=34.34 E-value=2.4e+02 Score=22.44 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=57.0
Q ss_pred Ccccccccccchhhhhhhccc--cCCCCcchHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRP--RTITTESYMKDAFANYAGYLNE-----------------LNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~iF~~~~~~Ld~-----------------~~d~RE~Iik~sRdIt~~ 84 (194)
...+||.+++.-... ..+. -++-..+.+..+...++..=-. -.+.|+++++.++.+...
T Consensus 28 g~~~~L~~lA~V~~~--~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i~v~iP~~T~E~R~~l~k~~k~~~E~ 105 (165)
T PF01765_consen 28 GSKVPLNELAQVSVK--DPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTIRVPIPPPTEERRKELVKQAKKIAEE 105 (165)
T ss_dssp TEEEEGGGTEEEEEE--ETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEEEEE--SSSHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecC--CCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 345677765443221 1122 1122246667777777653111 127899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|..|..+.+-... -.+.....+.+.++.+.+++...+-.
T Consensus 106 ~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~ 155 (165)
T PF01765_consen 106 AKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDE 155 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988875321 12233455566666665554444433
No 10
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=32.16 E-value=94 Score=24.14 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 029345 71 RERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAV 114 (194)
Q Consensus 71 RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v 114 (194)
-.-+.+++|.|..-|+++..++||...-....-++.|++.+.++
T Consensus 59 ~~LL~e~~rRir~GS~RL~~Al~r~~~~~daGDldgARq~m~dv 102 (123)
T TIGR02267 59 LALLKEISRRIRVGSRRLSRALTEAIRHRDAGDLDGARALLLDV 102 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Confidence 34466778888888999999999974322222355666656554
No 11
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=31.81 E-value=3.1e+02 Score=22.93 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=60.4
Q ss_pred CcccccccccchhhhhhhccccCCCC--cchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTITT--ESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..++||.|+++..++ ..|+=.+.+ .+.+..+-..++.. | .--.++|.+++|.++.....
T Consensus 48 G~~tPl~qvAsIsvp--e~r~l~I~p~Dks~~~~IekaI~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~Ee 125 (187)
T COG0233 48 GSPTPLNQLASISVP--EARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEE 125 (187)
T ss_pred CCCCcHHHHhhccCC--CcceEEeecCccchHHHHHHHHHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 457788887654333 233322222 34555555555421 1 11236788999999999999
Q ss_pred HHHHHHHHHhccC--------C--ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029345 85 SKKVIFQVHRISR--------D--NKEEVLKKAEADLEAVKDQYISRLVKEL 126 (194)
Q Consensus 85 Sk~iIf~LHR~~~--------~--~~~~~l~~A~~~l~~v~~~~~~~La~~l 126 (194)
+|-.++.+-|--. + -.+.-+..+.+.++.+.+.+++++-+.+
T Consensus 126 akvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 126 AKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877421 1 1244566777777777766666555443
No 12
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=29.68 E-value=3.9e+02 Score=24.02 Aligned_cols=26 Identities=4% Similarity=0.104 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 029345 58 ANYAGYLNELNEKRERVVKSSRDITI 83 (194)
Q Consensus 58 ~~~~~~Ld~~~d~RE~Iik~sRdIt~ 83 (194)
..=+.++...++.||+-++.-|+++.
T Consensus 119 ~Er~~~iTt~~qq~ee~Le~k~~~is 144 (385)
T PF15642_consen 119 EERRKKITTSHQQHEEALEKKKEDIS 144 (385)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666443
No 13
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=29.46 E-value=3.4e+02 Score=22.79 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHhhcCCChhhhhhhh-chhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 121 RLVKELQGTDFWKLRRAY-SPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 121 ~La~~l~~~~y~ry~~~~-s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
.|.++|| .++.....| .+.++-++..-.-+++--..+| .++.. .++ .-+-+||..|..
T Consensus 166 ~Lk~ELP--~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l---~~~~~---~~~-------~~~~~~y~~~~~ 224 (224)
T cd07591 166 QLKTELP--QLVDLRIPYLDPSFEAFVKIQLRFFTEGYERL---AQVQR---YLD-------AQTREDYANGQL 224 (224)
T ss_pred HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh---hcc-------hhhHHHHhccCC
Confidence 5666777 566666544 5666666665554444433333 33322 121 235689988863
No 14
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=29.18 E-value=3.5e+02 Score=22.86 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH---HHHHHHHhhcCC
Q 029345 55 DAFANYAGYLNELNEKRERVVKSSRDITIN--SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQ---YISRLVKELQGT 129 (194)
Q Consensus 55 ~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~--Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~---~~~~La~~l~~~ 129 (194)
...+.+...+...-++|++|.|..|.+.-+ +|.-...|+-... +.+..+.+|++.+...+.. +=..|..+||
T Consensus 91 ~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~-kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP-- 167 (211)
T cd07612 91 QALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKK-KDDAKIAKAEEEFNRAQVVFEDINRELREELP-- 167 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 346667777778888999999999988777 6666666664322 1233344444444333221 1135666776
Q ss_pred Chhhhhh-hhchhHHHHHHHH
Q 029345 130 DFWKLRR-AYSPGVQEYVEAA 149 (194)
Q Consensus 130 ~y~ry~~-~~s~~lQEyvEA~ 149 (194)
..|..+- .|.+.+|-++-+-
T Consensus 168 ~L~~~Ri~f~~psFeal~~~q 188 (211)
T cd07612 168 ILYDSRIGCYVTVFQNISNLR 188 (211)
T ss_pred HHHHhcchHHHHHHHHHHHHH
Confidence 4555544 3467777665443
No 15
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=28.74 E-value=2.8e+02 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHhh
Q 029345 142 VQEYVEAATFCKFCRTGTLLDLEELNA 168 (194)
Q Consensus 142 lQEyvEA~~f~~~L~~~~Llt~eev~~ 168 (194)
++|....+.=++.+-+..+++.|.+++
T Consensus 89 v~els~~L~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666677777777777788777
No 16
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=28.31 E-value=33 Score=19.43 Aligned_cols=12 Identities=50% Similarity=0.966 Sum_probs=9.9
Q ss_pred hhHHHHHHhhcc
Q 029345 4 APALRSWISSSR 15 (194)
Q Consensus 4 ~~~~~~~~~~~~ 15 (194)
-|+|-|||...|
T Consensus 13 LP~lISWIK~kr 24 (26)
T PF01372_consen 13 LPTLISWIKNKR 24 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 489999998765
No 17
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=26.39 E-value=3.7e+02 Score=22.09 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=56.0
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH----------------H-hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY----------------L-NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~----------------L-d~~~d~RE~Iik~sRdIt~~ 84 (194)
+.++||.+++...... .++=.+. ..+.+..+-..++.. + .--.+.|++++|.++.+...
T Consensus 46 g~~~pL~~lA~Isv~~--~~~l~I~p~D~~~i~~I~kAI~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~ 123 (185)
T PRK00083 46 GSPTPLNQVASISVPE--ARTLLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEE 123 (185)
T ss_pred CCCccHHHceeeecCC--CCEEEEEeCCHhHHHHHHHHHHHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467777765532222 1221111 135566666666651 0 12247899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|..|+.+.|-... -.+..+..+.+.++.+.+++...+-+
T Consensus 124 aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~ 173 (185)
T PRK00083 124 AKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDE 173 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888775211 01223445555566655554444433
No 18
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.01 E-value=2.4e+02 Score=19.84 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------ChHHHHHHHHHHHHHHHH
Q 029345 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD------NKEEVLKKAEADLEAVKD 116 (194)
Q Consensus 51 ~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~------~~~~~l~~A~~~l~~v~~ 116 (194)
..+.++...+.+.+...+..++++-+..|.+.. ..|.+.+.- -..+.+.++++++..+-.
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~------~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEa 71 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNIRARLQ------SALSKLDLVTREEFDAQKAVLARTREKLEALEA 71 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------HHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677667778877777775433 345555442 234467777777776654
No 19
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=25.80 E-value=4.1e+02 Score=22.47 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 029345 52 YMKDAFANYAGYLNELNEKRERVVKSSRDITIN--SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQ---YISRLVKEL 126 (194)
Q Consensus 52 ~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~--Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~---~~~~La~~l 126 (194)
.+.++.+++...+.---++|+.|.|.-|.+.-+ +|.-...|+-.. .+-+..+.+|++.+...+.. +=..|.++|
T Consensus 88 lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~-~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~EL 166 (211)
T cd07611 88 LVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSK-RKDEGRIAKAEEEFQKAQKVFEEFNVDLQEEL 166 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888889999999998876544 222222232211 11233444444444332221 113567777
Q ss_pred cCCChhhhhh-hhchhHHHHHHHHH
Q 029345 127 QGTDFWKLRR-AYSPGVQEYVEAAT 150 (194)
Q Consensus 127 ~~~~y~ry~~-~~s~~lQEyvEA~~ 150 (194)
| ..|..+- .|.+.+|-++-+-.
T Consensus 167 P--~L~~~Ri~f~~psFeal~~~q~ 189 (211)
T cd07611 167 P--SLWSRRVGFYVNTFKNVSSLEA 189 (211)
T ss_pred H--HHHHhhhHHhhhhHHHHHHHHH
Confidence 7 5666665 44788887765543
No 20
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=24.65 E-value=3.8e+02 Score=21.73 Aligned_cols=99 Identities=27% Similarity=0.378 Sum_probs=57.1
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..++||.+++...+.. .++=.+. ..+.+..+-..+++. | .=-.+.|++++|.++.....
T Consensus 42 g~~~pL~~lA~Vsv~~--~~~l~I~p~D~~~i~~I~kAI~~s~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~ 119 (179)
T cd00520 42 GAPTPLNQLASISVPE--PRTIVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEE 119 (179)
T ss_pred CCCccHHHceeeecCC--CCEEEEeecchhhHHHHHHHHHHCCCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567877765543222 1211111 235566666666542 0 11237799999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|..|+.+.|-... -.+..+..+.+.++++.+++...+-+
T Consensus 120 ~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~ 169 (179)
T cd00520 120 AKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDE 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888775321 02334555666666666655544443
No 21
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=24.31 E-value=2.2e+02 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 029345 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSK 86 (194)
Q Consensus 51 ~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk 86 (194)
+.+..+|..+++.|++.+++|..+-+..+++.+..+
T Consensus 67 ~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~l~~ 102 (168)
T PF15011_consen 67 EALETVLAKLRETLEELQKVRDSLSRQVRDVFQLYE 102 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888887666544
No 22
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.76 E-value=45 Score=31.46 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.4
Q ss_pred ChhhhhhhhchhHHHHHHHHH
Q 029345 130 DFWKLRRAYSPGVQEYVEAAT 150 (194)
Q Consensus 130 ~y~ry~~~~s~~lQEyvEA~~ 150 (194)
.++++.+.|+++++|||++..
T Consensus 227 ~PP~L~~~~S~~~kEFV~~CL 247 (467)
T KOG0201|consen 227 APPRLDGDFSPPFKEFVEACL 247 (467)
T ss_pred CCCccccccCHHHHHHHHHHh
Confidence 478899999999999999864
No 23
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.83 E-value=5.1e+02 Score=22.57 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=27.9
Q ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 029345 49 TESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 49 ~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~ 84 (194)
+-|.+++..+.++..|++.+.-.|++++---++...
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888889999999999988888888766655443
No 24
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=21.89 E-value=1e+02 Score=27.61 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHH---HHhcCCCCCHHHHhhccCCCCC---CCCCCCCcChHHhhcccc
Q 029345 139 SPGVQEYVEAATFCK---FCRTGTLLDLEELNAGLLPLSD---PAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 139 s~~lQEyvEA~~f~~---~L~~~~Llt~eev~~~llgl~~---~~~~~~~V~~eDYLlGL~ 193 (194)
..+.+||.+++-... =+...++|.+++|++.|...+. -.-. =-|+..|++.||+
T Consensus 81 ~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~-Gli~~~~Ff~~LA 140 (298)
T cd03345 81 THACKEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTGFQLRPVA-GLLSARDFLASLA 140 (298)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhccCCEEEecC-ccCCHHHHHHHHh
Confidence 578899999988764 3577899999999986653221 0001 1477778777765
No 25
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=21.59 E-value=5.8e+02 Score=24.93 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029345 57 FANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR 97 (194)
Q Consensus 57 F~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~ 97 (194)
-+.-+..+...+.+||++-+.++|+|..+.-+-.++|-+..
T Consensus 613 kQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ 653 (790)
T PF07794_consen 613 KQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKV 653 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 44556677788899999999999999988887778887643
No 26
>PRK05685 fliS flagellar protein FliS; Validated
Probab=21.16 E-value=3.8e+02 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 100 KEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 100 ~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
..+.++++...+.++++ -|..+.+
T Consensus 103 d~~~l~ev~~il~~Lre-aW~~i~~ 126 (132)
T PRK05685 103 DVQAIDEVEGLLREIKE-AWKQIPP 126 (132)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455666666666665 3444443
No 27
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=20.85 E-value=74 Score=27.18 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCC--CCCCcChHHhhcccc
Q 029345 139 SPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAI--EPLQINVFDYLLGVI 193 (194)
Q Consensus 139 s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~--~~~~V~~eDYLlGL~ 193 (194)
..+.+||.+++-... +...++|.+++|++.|...+.=.- -+=-|+..+++.+|+
T Consensus 26 ~~Ac~~yl~gl~~l~-l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA 81 (221)
T cd00361 26 THACREYLEGLELLG-LPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLA 81 (221)
T ss_pred cccCHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHh
Confidence 467888888888877 778899999999986653221000 011366777776654
Done!