Query 029345
Match_columns 194
No_of_seqs 132 out of 390
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 5.3E-37 1.8E-41 266.6 16.9 147 45-193 27-192 (290)
2 1j1j_A Translin; testis/brain 100.0 2.4E-36 8.2E-41 256.3 16.7 142 50-193 12-157 (240)
3 3axj_B TRAX, translin associat 100.0 4.3E-36 1.5E-40 261.8 15.4 147 46-193 23-203 (298)
4 3axj_A GM27569P, translin; tra 100.0 5.8E-36 2E-40 255.2 15.6 141 51-193 18-160 (249)
5 4gfq_A Ribosome-recycling fact 44.6 1.2E+02 0.0042 24.4 8.6 99 24-124 70-197 (209)
6 1dd5_A Ribosome recycling fact 43.7 1.2E+02 0.0041 24.0 8.6 99 24-124 46-173 (185)
7 1ise_A Ribosome recycling fact 42.9 1.2E+02 0.0042 23.9 8.6 99 24-124 46-173 (185)
8 1is1_A Ribosome recycling fact 42.8 1.2E+02 0.0042 23.9 9.0 99 24-124 46-173 (185)
9 1vh6_A Flagellar protein FLIS; 42.1 80 0.0027 23.8 6.7 28 99-127 98-125 (145)
10 1wqg_A Ribosome recycling fact 41.9 1.3E+02 0.0043 23.8 9.0 99 24-124 46-173 (185)
11 3lhp_S 4E10_D0_1ISEA_004_N (T9 40.6 96 0.0033 23.1 6.7 71 55-125 22-112 (123)
12 1eh1_A Ribosome recycling fact 37.6 1.2E+02 0.0043 23.8 7.4 56 69-124 109-174 (185)
13 1ge9_A Ribosome recycling fact 34.5 1.2E+02 0.0042 23.8 7.0 99 24-124 49-172 (184)
14 3lf9_A 4E10_D0_1IS1A_001_C (T1 33.1 1.5E+02 0.0051 22.0 9.2 70 57-126 17-103 (121)
15 3qf7_D MRE11; ABC-ATPase, ATPa 31.2 73 0.0025 19.6 3.9 34 55-88 8-41 (50)
16 3fyq_A CG6831-PA (talin); 5-he 31.0 2.1E+02 0.0071 23.0 8.9 26 66-91 41-66 (199)
17 1gak_A SP18, fertilization pro 28.3 30 0.001 26.1 2.2 27 69-95 51-77 (141)
18 3qrx_B Melittin; calcium-bindi 28.2 22 0.00076 19.2 1.0 12 4-15 13-24 (26)
19 2yfa_A MCPS, methyl-accepting 21.3 2.8E+02 0.0097 21.3 11.8 52 101-153 170-226 (258)
20 1uru_A Amphiphysin; endocytosi 20.9 2.9E+02 0.01 21.3 8.2 50 100-155 171-221 (244)
21 3ajm_A Programmed cell death p 20.4 2.8E+02 0.0094 22.5 6.6 15 131-145 160-174 (213)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=5.3e-37 Score=266.63 Aligned_cols=147 Identities=37% Similarity=0.626 Sum_probs=130.4
Q ss_pred cCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD-NKEEVLKKAEADLEAVKDQYISRLV 123 (194)
Q Consensus 45 ~~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~-~~~~~l~~A~~~l~~v~~~~~~~La 123 (194)
+.+++++++.++|++|+++||++||+||+|+|+|||||+.||++||+|||+|.. +.+++|++|++.+.++++ .++.|+
T Consensus 27 ~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~La 105 (290)
T 3qb5_K 27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQVA 105 (290)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 568888999999999999999999999999999999999999999999999975 578899999999999976 799999
Q ss_pred HhhcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCC-C-----------------CCCcCh
Q 029345 124 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAI-E-----------------PLQINV 185 (194)
Q Consensus 124 ~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~-~-----------------~~~V~~ 185 (194)
+++++.+||+|+++|++++||||||++|++||++++|+|++||++.| ++..+.. + .|+|++
T Consensus 106 ~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 184 (290)
T 3qb5_K 106 QELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQL-IFTTEDNGKENKTPSSDAQDKQFGTWRLRVTP 184 (290)
T ss_dssp HHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTT-EECC--------------------CEECCCCH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-cccccccccccccccccccccccccceecCCH
Confidence 99999999999999999999999999999999999999999999844 4432221 1 399999
Q ss_pred HHhhcccc
Q 029345 186 FDYLLGVI 193 (194)
Q Consensus 186 eDYLlGL~ 193 (194)
+|||+||+
T Consensus 185 eDYLlGL~ 192 (290)
T 3qb5_K 185 VDYLLGVA 192 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999996
No 2
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=2.4e-36 Score=256.31 Aligned_cols=142 Identities=18% Similarity=0.348 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029345 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAEADLEAVKDQYISRLVKE 125 (194)
Q Consensus 50 ~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~----~~~~~~l~~A~~~l~~v~~~~~~~La~~ 125 (194)
+|++.++|+.++++||+++|+||+|+|+||||++.||++||+|||+|+ .+.+++|++|++.+.++++ .+++|+++
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~ 90 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK 90 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 488999999999999999999999999999999999999999999984 2478899999999999987 58999999
Q ss_pred hcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 126 l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
+++.+||+|++.|++++||||||++|++||++|+|+|++||++ .+|++.+...+|+|+++|||+||+
T Consensus 91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~-~L~~~~~~~~~f~v~~edYLlGL~ 157 (240)
T 1j1j_A 91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE-ILGIEPDREKGFHLDVEDYLSGVL 157 (240)
T ss_dssp SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHTCCCSSSSSSCCCHHHHHHHHH
T ss_pred cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HhCCCccccccCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 457777778899999999999996
No 3
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=4.3e-36 Score=261.78 Aligned_cols=147 Identities=31% Similarity=0.535 Sum_probs=134.9
Q ss_pred CCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 46 TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR--DNKEEVLKKAEADLEAVKDQYISRLV 123 (194)
Q Consensus 46 ~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~--~~~~~~l~~A~~~l~~v~~~~~~~La 123 (194)
++++++++.++|+.|+++||++||+||+|+|+||||++.||++||+|||+|. .+.+++|++|++.+.++++++++.|+
T Consensus 23 ~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la 102 (298)
T 3axj_B 23 QLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVA 102 (298)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999999999998 67889999999999999987889999
Q ss_pred HhhcCCChhhhhhhhchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC-------------------
Q 029345 124 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------- 175 (194)
Q Consensus 124 ~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~---~------~~Llt~eev~~~llgl~~------------------- 175 (194)
.++++.+||+|+++|++++||||||++|++||+ + |+|+|++||++.| ++..
T Consensus 103 ~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L-~~~~~~~~~~~~~~~~~~~~~d~ 181 (298)
T 3axj_B 103 LELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVM-QYVEESSQPKEEPTEGEDVQAIA 181 (298)
T ss_dssp HHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHC-EEECCCC----------------
T ss_pred HHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHh-ccccccccccccccccccccccc
Confidence 999999999999999999999999999999999 8 9999999999854 3321
Q ss_pred ----CCCCCCCcChHHhhcccc
Q 029345 176 ----PAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 176 ----~~~~~~~V~~eDYLlGL~ 193 (194)
+....|||+++|||+||+
T Consensus 182 ~~~~~~~~~f~v~~edYLlGL~ 203 (298)
T 3axj_B 182 QVESPKKFQFFVDPTEYILGLS 203 (298)
T ss_dssp ----CCEEECCCCHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHH
Confidence 111268999999999996
No 4
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=5.8e-36 Score=255.20 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=132.1
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029345 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQG 128 (194)
Q Consensus 51 ~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~~~~La~~l~~ 128 (194)
+++.++|+.|+++||++||+||+|+|+||||++.||++||+|||+|+. +.+++|++|++.+.++++ .+++|++++++
T Consensus 18 ~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~~ 96 (249)
T 3axj_A 18 FVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVPA 96 (249)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 577899999999999999999999999999999999999999999964 467899999999999988 58999999999
Q ss_pred CChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345 129 TDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193 (194)
Q Consensus 129 ~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~ 193 (194)
.+||+|++.|++++||||||++|++||++|+|+|++||++ .++++.+...+|+|+++|||+||+
T Consensus 97 ~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~-~L~~~~~~~~~f~v~~edYLlGL~ 160 (249)
T 3axj_A 97 GQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAE-MLGLKISQSEGFHLDVEDYLLGIL 160 (249)
T ss_dssp TCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHTCBSSTTTSSBCCHHHHHHHHH
T ss_pred CchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HhccccCCCcccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 557776677889999999999996
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=44.59 E-value=1.2e+02 Score=24.42 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=59.6
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGYL-----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~L-----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..++||.|++.-.+. ..|.=.+. ..+.+..|-..|++.= .=-.++|++++|.++.....
T Consensus 70 G~~tPL~qvA~Isvp--e~rtl~I~p~D~s~i~~IekAI~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~ 147 (209)
T 4gfq_A 70 GAPTPVVQLANITVP--EARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEE 147 (209)
T ss_dssp SCEEEGGGGEEEEEE--ETTEEEEEESSGGGHHHHHHHHHHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhheeecC--CCCEEEEecCcHhhHHHHHHHHHHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHH
Confidence 456788887554332 22221121 2456677777666541 11237899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|-.|+.+-|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 148 aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~ 197 (209)
T 4gfq_A 148 AKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDE 197 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988774221 11234455566666666655555444
No 6
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=43.66 E-value=1.2e+02 Score=23.96 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=60.2
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..+.||.|++.-.+.. .|.=.+. ..+.+..+-..|+.. | .=-.++|++++|.++.....
T Consensus 46 G~~~pL~qvA~Isv~~--~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~ 123 (185)
T 1dd5_A 46 GVPTPVNQLATISISE--ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEE 123 (185)
T ss_dssp TEEEEGGGSEEEEECS--TTEEEEEESSTTHHHHHHHHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCC--CCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467888876543332 2221122 235677777777664 1 11247899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 124 aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1dd5_A 124 GKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988775321 12334555666666666655555543
No 7
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=42.89 E-value=1.2e+02 Score=23.88 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=60.0
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..+.||.|++.-.+.. .|.=.+. ..+.+..+-..|+.. | .=-.++|++++|.++.....
T Consensus 46 G~~~pL~qvA~Isv~~--~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~ 123 (185)
T 1ise_A 46 GTPTPLRQLASVTVED--SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQ 123 (185)
T ss_dssp TEEEEGGGTEEEEEEE--TTEEEEEESSGGGHHHHHHHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCC--CCEEEEeccCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467888865543332 2221122 235677777777653 1 11237899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 124 aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1ise_A 124 ARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988775221 12334555666666666655555543
No 8
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=42.82 E-value=1.2e+02 Score=23.86 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=60.9
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..+.||.|++.-.+.. .|.=.+. ..+.+..+-..|+.. | .=-.++|++++|.++.....
T Consensus 46 G~~~pL~qvA~Isv~~--~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~ 123 (185)
T 1is1_A 46 GAATPLNQVANVVAED--ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEG 123 (185)
T ss_dssp TEEEEGGGTEEEEEEE--TTEEEEEESSTTTHHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCC--CCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467888875543332 2221122 235677777777764 1 11237899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 124 aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1is1_A 124 GRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988774221 12334556666777776665555544
No 9
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=42.09 E-value=80 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029345 99 NKEEVLKKAEADLEAVKDQYISRLVKELQ 127 (194)
Q Consensus 99 ~~~~~l~~A~~~l~~v~~~~~~~La~~l~ 127 (194)
+..+.++++...+.++++ -|..+.+...
T Consensus 98 ~D~~~ldev~~ll~~Lre-aW~~i~~~~~ 125 (145)
T 1vh6_A 98 NDTGMLAEVEGYVTDFRD-AWKQAIQSER 125 (145)
T ss_dssp TCHHHHHHHHHHHHHHHH-HHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 445677888888888887 4666655443
No 10
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=41.92 E-value=1.3e+02 Score=23.77 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=61.0
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITIN 84 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~-L----------------d~~~d~RE~Iik~sRdIt~~ 84 (194)
..+.||.|++.-.+.. .|.=.+. ..+.+..+-..|+.. | .=-.++|++++|.++.....
T Consensus 46 G~~~pL~qvA~Isv~~--~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~ 123 (185)
T 1wqg_A 46 GAATPITQLASINVPE--ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEE 123 (185)
T ss_dssp TEEEEGGGSEEEEEEE--TTEEEEEESSGGGHHHHHHHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCC--CCEEEEEeCCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467888876543332 2221122 246677777777764 1 11237899999999999999
Q ss_pred HHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 85 SKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 85 Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
+|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 124 aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1wqg_A 124 AKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988775221 12334556666677766655555543
No 11
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=40.59 E-value=96 Score=23.09 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------C--ChHHHHHHHHHHHHHH
Q 029345 55 DAFANYAGYLNEL----------NEKRERVVKSSRDITINSKKVIFQVHRISR--------D--NKEEVLKKAEADLEAV 114 (194)
Q Consensus 55 ~iF~~~~~~Ld~~----------~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~--------~--~~~~~l~~A~~~l~~v 114 (194)
...+.+.+.+|.. .++|.+++|.++.....+|-.|..+.|--. . -.+.....+.+.++.+
T Consensus 22 ~~~~~~~n~~~~~~~~IRl~iPTEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKL 101 (123)
T 3lhp_S 22 KAVEAFKNKLDKFKAAVRKVFPTEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKL 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Confidence 4445555555544 478999999999999999999998888311 0 1122344556666666
Q ss_pred HHHHHHHHHHh
Q 029345 115 KDQYISRLVKE 125 (194)
Q Consensus 115 ~~~~~~~La~~ 125 (194)
...++..+-+.
T Consensus 102 TDkyIkkID~l 112 (123)
T 3lhp_S 102 TDAAIKKIEAA 112 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555554443
No 12
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=37.62 E-value=1.2e+02 Score=23.83 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 69 EKRERVVKSSRDITINSKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 69 d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
++|++++|.++.....+|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 109 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 174 (185)
T 1eh1_A 109 ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999988775321 11234455666666666555554433
No 13
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=34.52 E-value=1.2e+02 Score=23.82 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=62.5
Q ss_pred CcccccccccchhhhhhhccccCCC--CcchHHHHHHHHHHHHh----------------hHHHHHHHHHHHHHHHHHHH
Q 029345 24 SKTHRLHQLSGTALQSIAKRPRTIT--TESYMKDAFANYAGYLN----------------ELNEKRERVVKSSRDITINS 85 (194)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~iF~~~~~~Ld----------------~~~d~RE~Iik~sRdIt~~S 85 (194)
..+.||.|++.-.+.. .|.=.+. ..+.+..+-..++..|. =-.++|++++|.++.....+
T Consensus 49 G~~tpL~qvA~Isv~~--~r~l~I~p~D~~~i~~IekAI~~dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~a 126 (184)
T 1ge9_A 49 GSKVPIKQLGTISVPE--HNQIVIQVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEA 126 (184)
T ss_dssp SCEECTTTTCEEECSS--SSEEEEECSSSSHHHHHHHHHHHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCC--CCEEEEEecCHHHHHHHHHHHHhCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888875543332 2221222 24677788777777431 12378999999999999999
Q ss_pred HHHHHHHHhccCC-------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 86 KKVIFQVHRISRD-------NKEEVLKKAEADLEAVKDQYISRLVK 124 (194)
Q Consensus 86 k~iIf~LHR~~~~-------~~~~~l~~A~~~l~~v~~~~~~~La~ 124 (194)
|-.|+.+.|-... -.+.....+.+.++.+.+++++.+-+
T Consensus 127 KvaiRniRrda~~~lKk~~kiseD~~k~~e~~iQkltd~~i~~id~ 172 (184)
T 1ge9_A 127 RVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINK 172 (184)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988775321 12344556667777776665555544
No 14
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=33.05 E-value=1.5e+02 Score=21.99 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CChHHHHHHHHHHHHHHHHHHH
Q 029345 57 FANYAGYLNEL-------NEKRERVVKSSRDITINSKKVIFQVHRISR----------DNKEEVLKKAEADLEAVKDQYI 119 (194)
Q Consensus 57 F~~~~~~Ld~~-------~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~----------~~~~~~l~~A~~~l~~v~~~~~ 119 (194)
.+.|...|..- .++|..++|.++.....+|-.|+.+-|--. +-.+.....+.+.++.+...++
T Consensus 17 ~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyI 96 (121)
T 3lf9_A 17 VEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAV 96 (121)
T ss_dssp HHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHH
Confidence 44455555432 478999999999999999999998887311 1123345566666766666655
Q ss_pred HHHHHhh
Q 029345 120 SRLVKEL 126 (194)
Q Consensus 120 ~~La~~l 126 (194)
+.+-+.+
T Consensus 97 kkID~ll 103 (121)
T 3lf9_A 97 KKIDEVL 103 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 15
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=31.17 E-value=73 Score=19.57 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 029345 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKV 88 (194)
Q Consensus 55 ~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~i 88 (194)
..|+-|.+++..+..-.|.++|+-.++....|+.
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4588889999998888999999998887776654
No 16
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=30.96 E-value=2.1e+02 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.418 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029345 66 ELNEKRERVVKSSRDITINSKKVIFQ 91 (194)
Q Consensus 66 ~~~d~RE~Iik~sRdIt~~Sk~iIf~ 91 (194)
...+.||.|++.++.++...|..+..
T Consensus 41 ~F~~~qe~Ilk~Ak~Lvedtk~LV~~ 66 (199)
T 3fyq_A 41 SFADHREHILQTAKALVEDTKVLVTG 66 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34688999999999999988887754
No 17
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=28.29 E-value=30 Score=26.11 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029345 69 EKRERVVKSSRDITINSKKVIFQVHRI 95 (194)
Q Consensus 69 d~RE~Iik~sRdIt~~Sk~iIf~LHR~ 95 (194)
--||++++-+++-++.||++|-+=|+-
T Consensus 51 ~nreRlm~~C~~y~~~Skkii~L~~~~ 77 (141)
T 1gak_A 51 VNRERMMRYCMDYARYSKKILQLKHLP 77 (141)
T ss_dssp HHHHHHHHBHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 459999999999999999999776654
No 18
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=28.17 E-value=22 Score=19.24 Aligned_cols=12 Identities=58% Similarity=0.985 Sum_probs=9.9
Q ss_pred hhHHHHHHhhcc
Q 029345 4 APALRSWISSSR 15 (194)
Q Consensus 4 ~~~~~~~~~~~~ 15 (194)
.|++-|||...|
T Consensus 13 LP~liSWiK~kr 24 (26)
T 3qrx_B 13 LPALISWIKRKR 24 (26)
T ss_pred chHHHHHHHHHh
Confidence 489999998765
No 19
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=21.35 E-value=2.8e+02 Score=21.33 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----hhhhhhhhchhHHHHHHHHHHHH
Q 029345 101 EEVLKKAEADLEAVKDQYISRLVKELQGTD-----FWKLRRAYSPGVQEYVEAATFCK 153 (194)
Q Consensus 101 ~~~l~~A~~~l~~v~~~~~~~La~~l~~~~-----y~ry~~~~s~~lQEyvEA~~f~~ 153 (194)
++..+.+.+.+.++.. .+..|...+++.. .......|..++++|+.+..-..
T Consensus 170 ~~~~~~~~~~~~~~~~-~l~~L~~~l~~~~~~l~~~~~~l~~Y~~~~~~~~~a~~~~~ 226 (258)
T 2yfa_A 170 SANEQAALRQLDAALA-DTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANIT 226 (258)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554 4555555555321 22233455666666666554433
No 20
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=20.90 E-value=2.9e+02 Score=21.29 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhh-hhchhHHHHHHHHHHHHHH
Q 029345 100 KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRR-AYSPGVQEYVEAATFCKFC 155 (194)
Q Consensus 100 ~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~ry~~-~~s~~lQEyvEA~~f~~~L 155 (194)
+++-+++|.+.+..+.+ .|..++| .++.... .+.+.++.|+++-.-++.-
T Consensus 171 ae~el~~ak~~ye~ln~----~L~~eLp--~l~~~~~~~~~~~l~~fv~~q~~~~~~ 221 (244)
T 1uru_A 171 GREQLEEARRTYEILNT----ELHDELP--ALYDSRILFLVTNLQTLFATEQVFHNE 221 (244)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777766553 4555665 3444444 3478888888887766553
No 21
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=20.45 E-value=2.8e+02 Score=22.49 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.1
Q ss_pred hhhhhhhhchhHHHH
Q 029345 131 FWKLRRAYSPGVQEY 145 (194)
Q Consensus 131 y~ry~~~~s~~lQEy 145 (194)
|-+|+..|++.+.||
T Consensus 160 FVkySKrFS~TLKeY 174 (213)
T 3ajm_A 160 FVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhHhhHHHHHH
Confidence 677777777777776
Done!