BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029346
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1
SV=1
Length = 427
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 53 ILLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDL 112
+ LR+++ +LK VL D +PYG+ IL+VY GSKNM+ + L P+IKWLG+ PSDL
Sbjct: 290 LFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDL 349
Query: 113 EKYNIPKLCRQILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALD 172
+KY IP+ CR +++ DI K LE+ FV+ N W +EL M K +KAEI+AL
Sbjct: 350 DKYKIPEQCRLPMTEQDIKTGKDMLEED----FVKKNPGWVEELNLMVKTKQKAEIQALS 405
Query: 173 MYEYKYLANKYLPSKFRAEDWL 194
+ ++YL+ YLP K + +DWL
Sbjct: 406 SFGFQYLSEVYLPLKLQQQDWL 427
>sp|Q9WTK8|SPO11_MOUSE Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2
SV=2
Length = 396
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +PYGI I+ +Y +GS +M+ L +P I+WLGL PSD+++ NIPK L+K D
Sbjct: 277 DADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQ 336
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFRA 190
KL + L++ ++ W+KEL+ M+ KAEI+AL + YL+ YLP+K R
Sbjct: 337 MKLDSILKR----PYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRF 392
Query: 191 EDWL 194
W+
Sbjct: 393 GGWI 396
>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana
GN=SPO11-1 PE=1 SV=1
Length = 362
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 54 LLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLE 113
LR + KL V DC+PYG IL Y FGS MA L P++KWLG FPSD E
Sbjct: 224 FLRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSE 283
Query: 114 KYNIPKLCRQILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDM 173
Y++PK C L+++D + + L + L R W EL+ M K G K EIEAL +
Sbjct: 284 VYSVPKQCLLPLTEEDKKRTEAMLLRCYL---KREMPQWRLELETMLKRGVKFEIEALSV 340
Query: 174 YEYKYLANKYLPSKFRAE 191
+ +L+ Y+PSK R E
Sbjct: 341 HSLSFLSEVYIPSKIRRE 358
>sp|Q9Y5K1|SPO11_HUMAN Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2
SV=1
Length = 396
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+GI I+ +Y +GS +M+ L VP I+WLGL PSDL++ N+PK L+K D
Sbjct: 277 DADPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQ 336
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFRA 190
KL + L + +V W KE++ M+ KAEI+AL YL+ YLP+K +
Sbjct: 337 MKLDSILRR----PYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKF 392
Query: 191 EDWL 194
W+
Sbjct: 393 GGWI 396
>sp|O27089|TOP6A_METTH Type 2 DNA topoisomerase 6 subunit A OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=top6A PE=3 SV=1
Length = 353
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+G HI V + GS +A N +LA P+ K+LG+ SD+ Y++P L D+
Sbjct: 238 DGDPWGFHIAMVIISGSAKLAHVNHQLATPDAKFLGVTASDIINYDLPT---DPLKDVDV 294
Query: 131 SKLKTFLE----KGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPS 186
+LK L+ +GD W+ E++KM G+KAE ++ Y +Y+ + YLP
Sbjct: 295 VRLKELLQDPRYRGDF---------WKTEIKKMLTIGKKAEQQSFSKYGLEYVVDTYLPE 345
Query: 187 KFRA 190
K A
Sbjct: 346 KLEA 349
>sp|Q57815|TOP6A_METJA Type 2 DNA topoisomerase 6 subunit A OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=top6A PE=1 SV=1
Length = 369
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 71 DCNPYG-IHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDD 129
D +PYG ++I GS +L++P + +G+ P D+ Y++P L + D
Sbjct: 249 DGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLPT---HPLKEQD 305
Query: 130 ISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFR 189
I ++K L+ D FVRS W+K L++M G +AE ++L Y KY+ N YLP K +
Sbjct: 306 IKRIKDGLKNDD---FVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIK 362
Query: 190 AED-WL 194
E WL
Sbjct: 363 DESTWL 368
>sp|Q971T1|TOP6A_SULTO Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=top6A PE=3
SV=1
Length = 387
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 12/149 (8%)
Query: 54 LLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDL- 112
+R + +LK V D +PYG +I +V+ GS +++ + RLA PN K+LG+ +D+
Sbjct: 242 FVRRLNEELKLPVYILTDADPYGWYIYSVFRIGSISLSYESERLATPNAKFLGVSMTDIF 301
Query: 113 -EKYNIPKLCRQ------ILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEK 165
+ P L Q I +KD + +K E + F +W+ E++ + K
Sbjct: 302 GDSNKKPYLSEQERRNYIIKAKD--ADIKRATEIKNYQWF--KTKAWQHEIEIFLNKKSK 357
Query: 166 AEIEALDMYEYKYLANKYLPSKFRAEDWL 194
EIEA+ K+LA +Y+P K +++D++
Sbjct: 358 LEIEAMASKGLKFLAFQYIPEKIKSKDYI 386
>sp|Q9YE67|TOP6A_AERPE Type 2 DNA topoisomerase 6 subunit A OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=top6A PE=3 SV=2
Length = 389
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 54 LLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLE 113
+R + +LK V D +PYG +I +VY GS ++ + RLA P K+LG+ +D+
Sbjct: 243 FVRRLHEELKLPVYIITDSDPYGWYIYSVYKVGSITLSYESERLATPKAKFLGVQMTDIF 302
Query: 114 KY--NIPKLCRQILSK-------DDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGE 164
Y P L K DI + K L +++ N W E++ K
Sbjct: 303 GYRGKKPYLSEAERKKFMIKATDKDIKRAKELLN----YSWIGKNRRWNVEIRLFLKHLV 358
Query: 165 KAEIEALDMYEYKYLANKYLPSKFRAEDWL 194
K EIEA+ K+ A +Y+P K DW+
Sbjct: 359 KLEIEAIASKGLKFFAYQYIPEKIETGDWI 388
>sp|A2BLE8|TOP6A_HYPBU Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1
Length = 387
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNI--PKLCRQ----I 124
D +PYG +I +V+ GS ++ + RLA PN +++G+ +D+ Y P L Q
Sbjct: 259 DADPYGWYIYSVFKIGSITLSYESERLATPNARFIGVSMTDIFGYKSKKPYLTEQERRNF 318
Query: 125 LSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYL 184
+ K + +K E + F W+ E+ ++ K EIEA+ ++LA+KYL
Sbjct: 319 IIKAKEADIKRAYELKNYKWF--QTKKWQIEIDIFLEKKAKLEIEAMTSKGLRFLADKYL 376
Query: 185 PSKFRAEDWL 194
P K DW+
Sbjct: 377 PEKIETGDWI 386
>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans
GN=spo-11 PE=3 SV=1
Length = 425
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 54 LLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLE 113
+L+ + K K + G FD +P+GI I Y +G VP I+W+GLFP+D
Sbjct: 238 VLKMLSEKRKFPIYGLFDADPHGIEIYLTYKYGPTKEFAEGRGAFVPTIEWIGLFPTDFH 297
Query: 114 KYNIPKLCRQILSKDDISKLKTFLEK----GDLVAFVRSNASWEKELQKMSKEGEKAEIE 169
++ I + L + D K++ + + G++V +EL M + K E+E
Sbjct: 298 RFTIDQSQCLPLVRTDFVKIEKMIPRSIQLGEIVV--------TRELDWMIQNKFKMELE 349
Query: 170 ALDMYEYKYLA 180
+++M +Y+A
Sbjct: 350 SINMCGQEYMA 360
>sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana
GN=SPO11-2 PE=1 SV=1
Length = 383
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D NP G+ IL + FGS M R A N+KW+GL DL IP+ L D
Sbjct: 270 DWNPAGLAILCTFKFGSIGMGLEAYRYAC-NVKWIGLRGDDLNL--IPEESLVPLKPKDS 326
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSK 187
K+ L L ++ +EL M + G++AEIEAL + Y YL KY+ +K
Sbjct: 327 QIAKSLLSSKIL------QENYIEELSLMVQTGKRAEIEALYCHGYNYLG-KYIATK 376
>sp|Q9V134|TOP6A_PYRAB Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=top6A PE=3 SV=1
Length = 382
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +PYG +I + GS N+A + +LA P+ K++G+ D+++YN+ + ++ I
Sbjct: 254 DGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLEHVTEKLKG---I 310
Query: 131 SKLKTFLEKGDLVAFVR-------SNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKY 183
K GD + N W+++L+ K G + E +AL +++A +Y
Sbjct: 311 PPDKKGGPTGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEY 370
Query: 184 LPSKFR 189
LP K R
Sbjct: 371 LPEKIR 376
>sp|Q3IPW7|TOP6A_NATPD Type 2 DNA topoisomerase 6 subunit A OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=top6A PE=3 SV=1
Length = 368
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 11 VLCLISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKIVILLREIRCKLKKSVLGSF 70
VLC+ + +R ++ N VI + +G R + + + L V+
Sbjct: 197 VLCVETGGMRDRLVENGFDEEHNVIIVHLKGQPARATRR----ITKRLHDDLDLPVVVFC 252
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +GS A + LA P +++G+ P+D+ +Y++P LS DI
Sbjct: 253 DGDPWSYRIYASVAYGSIKSAHLSEYLATPEAEYIGIQPADIVEYDLPT---DPLSDSDI 309
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKF 188
+ L++ L+ + W ++++ G+KAE +AL ++ YLP +
Sbjct: 310 NALESELDDPRF-----QDDYWREQIELQLDIGKKAEQQALASRGLDFVTETYLPERL 362
>sp|Q5JH82|TOP6A_PYRKO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=top6A PE=3
SV=1
Length = 385
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILS---- 126
D +PYG +I + GS N+A + +LA P K++G+ D++KY + + ++
Sbjct: 257 DGDPYGWYIYSTIKQGSINLAYLSDKLATPESKFVGMTMDDIKKYGLENVTEKLKGIPPN 316
Query: 127 --KDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYL 184
K LE+ + F N W+++LQ K G + E +AL +++A +YL
Sbjct: 317 KKGGPTGDYKRILEEMNYPWF--QNKEWQRQLQLALKWGVRIEQQALANKSLEFVAKEYL 374
Query: 185 PSKFRAEDWL 194
P K D L
Sbjct: 375 PEKINNGDLL 384
>sp|O05208|TOP6A_SULSH Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus shibatae
GN=top6A PE=1 SV=1
Length = 389
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 54 LLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLG-----LF 108
+R + +LK V D +PYG +I +V+ GS +++ + RLA P+ K+LG +F
Sbjct: 244 FVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDIF 303
Query: 109 PSDLEKYNIPKLCRQ---ILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEK 165
+ +K + + R+ I +KD + +K E + F +W++E+ + K
Sbjct: 304 GNSRKKPYLSEAERKNYIIKAKD--ADIKRAEEIKNYEWF--KTKAWQEEINTFLQRKAK 359
Query: 166 AEIEALDMYEYKYLANKYLPSKFRAEDWL 194
EIEA+ K+LA +Y+P K +D++
Sbjct: 360 LEIEAMASKGLKFLAFQYIPEKITNKDYI 388
>sp|O59209|TOP6A_PYRHO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=top6A PE=3 SV=2
Length = 382
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +PYG +I + GS N+A + +LA P+ K++G+ D+++YN+ + ++ I
Sbjct: 254 DGDPYGWYIYSTIKRGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLENVTEKLKG---I 310
Query: 131 SKLKTFLEKGDLVAFVR-------SNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKY 183
K GD + + W+++L+ K G + E +AL +++A +Y
Sbjct: 311 PPDKKGGPTGDYKRLIEELNYPWFQDKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEY 370
Query: 184 LPSKFR 189
LP K R
Sbjct: 371 LPEKIR 376
>sp|Q5V4R4|TOP6A_HALMA Type 2 DNA topoisomerase 6 subunit A OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=top6A PE=3 SV=1
Length = 368
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 11 VLCLISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKIVILLREIRCKLKKSVLGSF 70
VLC+ + +R ++ N + + + + G R L++ + +L V
Sbjct: 197 VLCVETGGMRDRLVENGFDDEYDALVVHLGGQPARATRR----LIKRLHDELDLPVTVFT 252
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +GS A + LA P +++G+ P D+ +Y +P LS D+
Sbjct: 253 DGDPWSYRIFGSVSYGSIKSAHLSEYLATPEAQFIGIRPEDIVEYELPT---DPLSDSDV 309
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKF 188
+ L++ LE WE++++ +KAE +AL ++ YLP +
Sbjct: 310 NALESELEDPRF-----QTDFWEEQIELQLDINKKAEQQALASRGLDFVTETYLPERL 362
>sp|Q8U0K9|TOP6A_PYRFU Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=top6A PE=3
SV=1
Length = 382
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 5 ESNFFIVLCLISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKIVILLREIRCKLKK 64
E N VL + ++A+ +I + + +G A+R L+ + +
Sbjct: 192 EINVDYVLVVETAAMADRLIEEKYPKRERALIIATQGQASRGVRR----LIHRLHYEEGL 247
Query: 65 SVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQI 124
++ D +PYG +I + GS N+A + +LA P+ K++G+ D+++Y + + ++
Sbjct: 248 PIIVFTDGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYGLEHVTEKL 307
Query: 125 LSKDDISKLKTFLEKGDLVAFVR-------SNASWEKELQKMSKEGEKAEIEALDMYEYK 177
I K GD + N W+++L+ K G + E +AL +
Sbjct: 308 KG---IPPDKKGGPTGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLE 364
Query: 178 YLANKYLPSKFR 189
++A +YLP K R
Sbjct: 365 FVAKEYLPEKIR 376
>sp|Q9HR32|TOP6A_HALSA Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=top6A PE=3
SV=1
Length = 366
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Query: 3 NTESNFFIVLCLISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKIVILLREIRCKL 62
+T+++F VLC+ + +R ++ N + + I + G R L + + +L
Sbjct: 189 DTDADF--VLCVETGGMRDRLVENGFDDDYNAIVVHLGGQPARATRR----LTKRLHDEL 242
Query: 63 KKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCR 122
V D +P+ I +GS A + LA P +++G+ P D+ Y++P
Sbjct: 243 DLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLPT--- 299
Query: 123 QILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANK 182
LS D++ L++ LE + W +++ +KAE +AL ++ +
Sbjct: 300 DPLSDSDVNALESELEDPRFQSDF-----WTEQIGLQLDIDKKAEQQALASRGLDFVTDT 354
Query: 183 YLPSKF 188
YLP +
Sbjct: 355 YLPERL 360
>sp|B0R4D2|TOP6A_HALS3 Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=top6A PE=3 SV=1
Length = 366
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Query: 3 NTESNFFIVLCLISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKIVILLREIRCKL 62
+T+++F VLC+ + +R ++ N + + I + G R L + + +L
Sbjct: 189 DTDADF--VLCVETGGMRDRLVENGFDDDYNAIVVHLGGQPARATRR----LTKRLHDEL 242
Query: 63 KKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCR 122
V D +P+ I +GS A + LA P +++G+ P D+ Y++P
Sbjct: 243 DLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLPT--- 299
Query: 123 QILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANK 182
LS D++ L++ LE + W +++ +KAE +AL ++ +
Sbjct: 300 DPLSDSDVNALESELEDPRFQSDF-----WTEQIGLQLDIDKKAEQQALASRGLDFVTDT 354
Query: 183 YLPSKF 188
YLP +
Sbjct: 355 YLPERL 360
>sp|O29322|TOP6A_ARCFU Type 2 DNA topoisomerase 6 subunit A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=top6A PE=3 SV=1
Length = 360
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +GS A + LA P +++G+ P+D+ KY++P L+++DI
Sbjct: 245 DGDPWSYRIFASVAYGSIKSAHLSEYLATPAAQFVGIRPTDIVKYDLPA---DKLTEEDI 301
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKF 188
L L + W+KE+ + +K+E +AL Y Y+ + YLP +
Sbjct: 302 KALNAILTDPRF-----DSEFWKKEVNLQLEINKKSEQQALAKYGLDYVTDVYLPERL 354
>sp|Q8TQF8|TOP6A_METAC Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=top6A PE=3 SV=2
Length = 373
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +G+ A + +A P ++LGL PSD+ +Y +L L++ DI
Sbjct: 258 DGDPWSYRIYASVAYGAIKSAHLSEFMATPAARFLGLQPSDIVEY---ELSTDKLTEQDI 314
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFR 189
S L++ L + W++++Q G+KAE +A ++ YLP++ +
Sbjct: 315 SALRSELSDPRF-----ESEYWKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLK 368
>sp|Q8PUB7|TOP6A_METMA Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=top6A PE=1 SV=1
Length = 369
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +G+ A + +A P K+LGL PSD+ +Y +L L++ D+
Sbjct: 254 DGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEY---ELSTDKLTEQDV 310
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFR 189
S L++ L + W++++Q G+KAE +A ++ YLP++ +
Sbjct: 311 SALRSELSDPRF-----ESDYWKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLK 364
>sp|Q468I6|TOP6A_METBF Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=top6A PE=3 SV=1
Length = 369
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 71 DCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDI 130
D +P+ I +G+ A + +A P K+LGL PSD+ +Y +L L++ DI
Sbjct: 254 DGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEY---ELSTDKLTEQDI 310
Query: 131 SKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFR 189
+ L++ L + W++++Q G+KAE +A ++ YLP++ +
Sbjct: 311 NALRSELSDPRF-----ESDYWKEQIQLQLDIGKKAEQQAFAGKGLNFVTEVYLPNRLK 364
>sp|Q8SVS9|SPO11_ENCCU Probable meiosis-specific protein SPO11 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SPO11 PE=3 SV=1
Length = 303
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 47 CENKIVILLREIRCKLKKSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLG 106
C+N V+LL+ I + K +V G FD +P+GIHI +Y +GSK + V I +G
Sbjct: 175 CKNT-VLLLKMI--EHKTAVAGLFDLDPFGIHIFCIYKYGSKETPD----IRVETIMRIG 227
Query: 107 LFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKA 166
+ D+ + N K L+ D+ + + G+L A +L + K K
Sbjct: 228 VCMEDVLEKNAYKDVFVKLNVHDLKMINRLVRFGELSA----------DLLFLRKIDGKV 277
Query: 167 EIEAL 171
E+EAL
Sbjct: 278 EMEAL 282
>sp|P40384|REC12_SCHPO Meiotic recombination protein rec12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec12 PE=1 SV=2
Length = 345
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 14 LISSAIRICIITNTVSNFFIVIR------LIREGAANR---TCENKIVILLREIRCKLKK 64
L+ S RI IT+T ++ + L E A+ T + ++ R+ KL K
Sbjct: 158 LLISHHRISSITSTAKWVLVIEKEAVFQTLTEEALADTIIVTAKGFPDLMTRKFLVKLAK 217
Query: 65 SV-----LGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPK 119
++ G FD +P+G+ I + + +GS N + N++ LG D+ +N +
Sbjct: 218 ALPDAKFFGIFDWDPHGLCIYSCFKYGS-NAYSHEPHSQLRNLQLLGPLYEDI--FNKNQ 274
Query: 120 LCRQILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEAL 171
L+K DI + T L+ F + E +LQ+M +KAEI+A+
Sbjct: 275 EFSLKLNKRDIKMITTLLQ---FEGFQKEPVVRE-QLQRMLFIQKKAEIQAI 322
>sp|Q803U7|EXO1_DANRE Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1
Length = 806
Score = 33.5 bits (75), Expect = 0.95, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 125 LSKDDISKLKTFLEKGDLVAFVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYL 184
L+K DI++ E DL+AF +K + KM K+G EIE + K L N +
Sbjct: 158 LNKSDIAQ-AVITEDSDLLAF-----GCKKVILKMDKQGNGLEIEQCHLGRCKSLGNIFT 211
Query: 185 PSKFR 189
KFR
Sbjct: 212 EEKFR 216
>sp|Q73LJ9|RUVA_TREDE Holliday junction ATP-dependent DNA helicase RuvA OS=Treponema
denticola (strain ATCC 35405 / CIP 103919 / DSM 14222)
GN=ruvA PE=3 SV=1
Length = 201
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 84 MFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDLV 143
+FG N A R+L L + ++ +G P+ +I+S + S L+ LE+GDL
Sbjct: 60 LFGFPNQAERSLFLDLTKVEGVG-----------PRQALKIMSGLNSSSLEKALEEGDLD 108
Query: 144 AFVRSNASWEKELQKM 159
++ +K QKM
Sbjct: 109 TLQKAPGVGKKTAQKM 124
>sp|B2KE80|GATB_ELUMP Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Elusimicrobium minutum (strain Pei191) GN=gatB PE=3
SV=1
Length = 472
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 101 NIKWLGLFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDLVAF--VRSNASWEKELQ- 157
N+ W+G +D+EK + L I T +E +L +F VR + E E Q
Sbjct: 172 NVSWVGASNADMEKGELRVDVNISLRPAGIKTFGTKVEIKNLNSFKAVRDAINVEIERQT 231
Query: 158 KMSKEGEKAEIEAL----------------DMYEYKYLANKYLPSKFRAEDWL 194
+M EG+K + E L D +Y+Y + LP A++WL
Sbjct: 232 EMLNEGKKIKQETLLFDKEKGETVSMRSKEDALDYRYFPDPDLPPLVLADEWL 284
>sp|Q54JG7|DST4_DICDI Serine/threonine-protein kinase dst4 OS=Dictyostelium discoideum
GN=dst4 PE=3 SV=1
Length = 485
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 21 ICIITNTVSNFFIVIRLIR-EGAANRTCENKIVILLREIRC 60
+C NTV+N + I+ + EG N + + +I IL +RC
Sbjct: 35 VCTCINTVNNEVVAIKFLEMEGEENSSLKKEITILKNTVRC 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,672,103
Number of Sequences: 539616
Number of extensions: 2650384
Number of successful extensions: 6959
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6907
Number of HSP's gapped (non-prelim): 47
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)