Query 029346
Match_columns 194
No_of_seqs 108 out of 352
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d3y_A DNA topoisomerase VI A 100.0 5.8E-52 2E-56 362.2 12.5 178 9-194 95-300 (301)
2 2zbk_A Type II DNA topoisomera 100.0 4.7E-47 1.6E-51 341.3 8.0 178 9-194 174-388 (389)
3 2q2e_A Type II DNA topoisomera 100.0 1.9E-46 6.3E-51 335.4 6.6 170 17-194 181-369 (369)
4 1t6t_1 Putative protein; struc 46.2 17 0.00057 26.9 3.3 51 32-84 21-83 (118)
5 3f6p_A Transcriptional regulat 45.6 55 0.0019 21.9 5.9 52 32-85 3-70 (120)
6 3i42_A Response regulator rece 43.4 39 0.0013 22.7 4.8 52 32-85 4-71 (127)
7 2vqe_M 30S ribosomal protein S 41.7 33 0.0011 25.7 4.3 66 77-162 15-84 (126)
8 2j48_A Two-component sensor ki 41.2 53 0.0018 21.2 5.1 51 33-85 3-69 (119)
9 3lte_A Response regulator; str 33.8 1.1E+02 0.0036 20.5 6.6 53 31-85 6-74 (132)
10 3r8n_B 30S ribosomal protein S 32.8 15 0.00051 30.0 1.3 40 29-78 148-189 (218)
11 3gt7_A Sensor protein; structu 32.4 83 0.0028 22.1 5.3 54 30-85 6-75 (154)
12 3jte_A Response regulator rece 32.1 1.1E+02 0.0039 20.7 5.9 54 32-85 4-73 (143)
13 3eod_A Protein HNR; response r 31.4 1.1E+02 0.0036 20.5 5.5 53 31-85 7-75 (130)
14 3t8y_A CHEB, chemotaxis respon 31.3 1.4E+02 0.0048 21.2 6.7 58 26-85 20-95 (164)
15 2vqe_B 30S ribosomal protein S 31.0 12 0.00041 31.4 0.4 16 62-77 180-197 (256)
16 2gkg_A Response regulator homo 31.0 1.1E+02 0.0037 20.0 5.5 51 33-85 7-74 (127)
17 3kht_A Response regulator; PSI 30.6 80 0.0027 21.7 4.9 53 31-85 5-75 (144)
18 4e7p_A Response regulator; DNA 29.9 1E+02 0.0034 21.4 5.3 55 29-85 18-90 (150)
19 3h5i_A Response regulator/sens 29.8 1E+02 0.0035 21.1 5.3 54 31-85 5-75 (140)
20 3gl9_A Response regulator; bet 29.1 1E+02 0.0035 20.6 5.1 52 32-85 3-70 (122)
21 1uoz_A Putative cellulase; hyd 27.9 45 0.0015 28.7 3.5 50 28-77 129-185 (315)
22 2a9o_A Response regulator; ess 27.8 1.3E+02 0.0043 19.5 6.6 51 33-85 3-69 (120)
23 1xhf_A DYE resistance, aerobic 27.7 1.2E+02 0.0041 19.9 5.2 51 33-85 5-71 (123)
24 1zgz_A Torcad operon transcrip 27.7 1.1E+02 0.0037 20.1 5.0 51 33-85 4-70 (122)
25 3nhm_A Response regulator; pro 27.7 1.3E+02 0.0045 20.0 5.5 52 32-85 5-71 (133)
26 3f6c_A Positive transcription 27.4 1.1E+02 0.0036 20.6 5.0 51 33-85 3-70 (134)
27 3hv2_A Response regulator/HD d 27.1 1.1E+02 0.0039 21.2 5.2 54 30-85 13-82 (153)
28 2xzm_B RPS0E; ribosome, transl 27.0 16 0.00054 30.3 0.5 17 61-77 135-153 (241)
29 3q9s_A DNA-binding response re 26.9 91 0.0031 24.4 5.0 18 32-49 38-55 (249)
30 1zh2_A KDP operon transcriptio 26.8 1.2E+02 0.0041 19.7 5.0 50 33-84 3-68 (121)
31 3hdg_A Uncharacterized protein 26.6 1.5E+02 0.0051 19.9 5.7 52 32-85 8-75 (137)
32 3bbn_B Ribosomal protein S2; s 26.3 17 0.00059 29.9 0.6 16 62-77 179-196 (231)
33 3eul_A Possible nitrate/nitrit 26.3 1.6E+02 0.0055 20.3 6.1 55 29-85 13-85 (152)
34 2zay_A Response regulator rece 26.3 1.6E+02 0.0053 20.1 6.6 53 31-85 8-76 (147)
35 3r8n_M 30S ribosomal protein S 26.1 67 0.0023 23.5 3.7 34 124-162 46-82 (114)
36 3j20_B 30S ribosomal protein S 25.8 25 0.00084 28.4 1.4 17 61-77 132-150 (202)
37 3hdv_A Response regulator; PSI 25.1 1.2E+02 0.004 20.4 4.9 54 31-85 7-76 (136)
38 2jba_A Phosphate regulon trans 24.9 1.2E+02 0.004 20.0 4.7 51 33-85 4-70 (127)
39 2qr3_A Two-component system re 24.6 1.6E+02 0.0055 19.7 5.8 52 32-85 4-76 (140)
40 3to5_A CHEY homolog; alpha(5)b 24.3 1.1E+02 0.0038 22.1 4.7 51 33-85 14-81 (134)
41 1qkk_A DCTD, C4-dicarboxylate 23.3 1.4E+02 0.0048 20.7 5.1 53 31-85 3-71 (155)
42 3j20_O 30S ribosomal protein S 23.1 67 0.0023 24.6 3.3 16 124-139 53-68 (148)
43 3grc_A Sensor protein, kinase; 23.0 1.8E+02 0.0061 19.6 5.8 53 31-85 6-74 (140)
44 1mvo_A PHOP response regulator 22.9 1.7E+02 0.0059 19.4 5.5 52 32-85 4-71 (136)
45 1srr_A SPO0F, sporulation resp 22.7 1.7E+02 0.0058 19.2 5.3 50 33-84 5-70 (124)
46 3n53_A Response regulator rece 22.6 90 0.0031 21.3 3.8 52 32-85 4-70 (140)
47 2fcj_A Small toprim domain pro 22.6 1.2E+02 0.0041 22.2 4.6 30 55-84 41-71 (119)
48 3u5c_A 40S ribosomal protein S 22.3 34 0.0012 28.6 1.6 17 61-77 138-156 (252)
49 3hzh_A Chemotaxis response reg 22.1 1.8E+02 0.0061 20.3 5.5 54 32-85 37-107 (157)
50 2qzj_A Two-component response 20.8 1.7E+02 0.0058 19.9 5.0 51 33-85 6-72 (136)
51 3rqi_A Response regulator prot 20.4 1.7E+02 0.0058 21.2 5.2 52 32-85 8-75 (184)
52 2oqr_A Sensory transduction pr 20.1 1.3E+02 0.0045 22.5 4.6 18 122-139 154-171 (230)
No 1
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=100.00 E-value=5.8e-52 Score=362.23 Aligned_cols=178 Identities=25% Similarity=0.461 Sum_probs=155.3
Q ss_pred eEEeee------ccccccccceeeeeccccEEEEEccchhhhhhchhHH-------------------HHHHHHHHhhcC
Q 029346 9 FIVLCL------ISSAIRICIITNTVSNFFIVIRLIREGAANRTCENKI-------------------VILLREIRCKLK 63 (194)
Q Consensus 9 ~~~~c~------ip~~~~~~~i~~i~~~a~~VLVVEKdavF~~L~~~~f-------------------R~fl~~L~~~~~ 63 (194)
..++|. +++|.+++.++. .++|+||||||||||||||++++| |+||++|+++++
T Consensus 95 ~~id~~~~~~~g~~Ip~~~~~i~~-~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kGyPd~aTR~fl~~L~~~~~ 173 (301)
T 1d3y_A 95 LVVDCTKLGTGAYNIPNDVTKLNL-ETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHD 173 (301)
T ss_dssp EEEETTSCTTSEEECCSCCTTCEE-ECCCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred cEEEeecCCCCceecCccHHhhee-ccCccEEEEEechHHHHHHHHhcccccCCEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 367774 356667888887 899999999999999999999977 999999999999
Q ss_pred CcEEEEecCCcchh-HHHHHHhhCCcccccccCCcCCCCeeEeeCCccccccccCCccccccCCHHHHHHHHHHHhcCCc
Q 029346 64 KSVLGSFDCNPYGI-HILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDL 142 (194)
Q Consensus 64 lpi~~L~D~DP~Gi-~I~~tYk~GS~~~~~~~~~~~~p~l~wlGv~~sdl~~~~~~~~~~~~Lt~rD~~~~~~ll~~~~~ 142 (194)
+|+|+|+|+||||+ +|+++|++||.+++|+++.++||+++|+|++++|+.++++| .+|||++|++++++|+++
T Consensus 174 lpv~~l~D~DP~G~~~I~~tyk~GS~~~~~~~~~l~~p~~~wlGv~~sdi~~~~~~---~~~Lt~~D~~~l~~ll~~--- 247 (301)
T 1d3y_A 174 LPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLP---THPLKEQDIKRIKDGLKN--- 247 (301)
T ss_dssp CCEEEECCBSHHHHHTHHHHHHC---------CTTCCTTCEEEESCHHHHHHTTCC---CEECCHHHHHHHHHHHHH---
T ss_pred CCEEEEecCChHHHHHHHHHHHhCchhhccccccccCCccEEcCCCHHHHHhcccc---cCcCCHHHHHHHHHHhhC---
Confidence 99999999999999 99999999999999999999999999999999999988875 569999999999999999
Q ss_pred chhcc-CcHHHHHHHHHHHHhCCeeeEeeeccccccchhhchhHhhhccCC-CC
Q 029346 143 VAFVR-SNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFRAED-WL 194 (194)
Q Consensus 143 ~~~~~-~~~~~~~EL~~ml~~~~KaEieal~~~g~~~l~~~Yl~~Ki~~~~-~~ 194 (194)
|+++ ..++|++||++|++.|+||||||+++.|.+|++++|||+||++++ ||
T Consensus 248 -~~~~~~~~~w~~el~~ml~~~~KaEieal~~~g~~f~~~~yl~~Ki~~~~~~~ 300 (301)
T 1d3y_A 248 -DDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTWL 300 (301)
T ss_dssp -CHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHHHTHHHHHHHCGGGCC
T ss_pred -ccccCcHHHHHHHHHHHHHhCCEEEEehhhhcCccchHHHHHHHHHhcCCcCC
Confidence 6774 235699999999999999999999999999999999999999999 97
No 2
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=100.00 E-value=4.7e-47 Score=341.26 Aligned_cols=178 Identities=23% Similarity=0.348 Sum_probs=158.9
Q ss_pred eEEeeec------cccccccceeeeeccccEEEEEccchhhhhhchhHH-------------------HHHHHHHHhhcC
Q 029346 9 FIVLCLI------SSAIRICIITNTVSNFFIVIRLIREGAANRTCENKI-------------------VILLREIRCKLK 63 (194)
Q Consensus 9 ~~~~c~i------p~~~~~~~i~~i~~~a~~VLVVEKdavF~~L~~~~f-------------------R~fl~~L~~~~~ 63 (194)
..++|.- .+|.+++.|+.+.+++++||||||+|||++|++++| |+||++|+++++
T Consensus 174 ~~id~~~~g~~g~~Ip~~~~~i~~i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kG~Pd~aTR~fL~~L~~~~~ 253 (389)
T 2zbk_A 174 DVIDLSKTGHGAYAIEPTPDLIDFIDVDAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELK 253 (389)
T ss_dssp EEEESSCCTTCCBCCCSCCSSEEEEEECCSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHHHHHHHHHSC
T ss_pred cEEEeecCCCCceeCCccHHHhhccccCccEEEEEecHHHHHHHHHhCcCccCCEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 4577752 445678889988999999999999999999999876 999999999999
Q ss_pred CcEEEEecCCcchhHHHHHHhhCCcccccccCCcCCCCeeEeeCCccccccccCCccccccCCHHH-----HHHHHHHHh
Q 029346 64 KSVLGSFDCNPYGIHILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDD-----ISKLKTFLE 138 (194)
Q Consensus 64 lpi~~L~D~DP~Gi~I~~tYk~GS~~~~~~~~~~~~p~l~wlGv~~sdl~~~~~~~~~~~~Lt~rD-----~~~~~~ll~ 138 (194)
+|+|+++|+||||+.|++||++||.+++|+++.+++|+++|+|++++|+.++++|. .|||++| +++++++++
T Consensus 254 lpv~~l~D~DP~Gi~I~~tyk~GS~~~a~~~~~l~~P~l~~lG~~~~di~~~~~~~---~~Lt~~Dr~~~~~k~l~~ll~ 330 (389)
T 2zbk_A 254 LPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSRKK---PYLSEAERKNYIIKAKDADIK 330 (389)
T ss_dssp CCEEEECCSSHHHHHHHHHHTSCSCC-----CCCSCSSCEECCCCHHHHHCCSSSC---CSSCHHHHHHHCEECCHHHHH
T ss_pred CCEEEEecCChhhhhhHHHHhhcchhhhhhhhcccCCceEEcCCcHHHHHhccccc---ccCChhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887754 6999999 889999998
Q ss_pred cCCcch-------hccCcHHHHHHHHHHHHhCCeeeEeeeccccccchhhchhHhhhccCCCC
Q 029346 139 KGDLVA-------FVRSNASWEKELQKMSKEGEKAEIEALDMYEYKYLANKYLPSKFRAEDWL 194 (194)
Q Consensus 139 ~~~~~~-------~~~~~~~~~~EL~~ml~~~~KaEieal~~~g~~~l~~~Yl~~Ki~~~~~~ 194 (194)
+ | ++. .++|++||++|++.|+|+||||+.++|.+|++++|||+||.++|||
T Consensus 331 ~----~~~~~~~~~~~-~~~w~~el~~Ml~~~~KaE~Eal~~~g~~fl~~~yl~~Ki~~~~~i 388 (389)
T 2zbk_A 331 R----AEEIKNYEWFK-TKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKITNKDYI 388 (389)
T ss_dssp H----HHHHTTSTTTT-TTTTTHHHHHHHHHCEECCHHHHHTTCTHHHHHTHHHHHHHHTCSB
T ss_pred c----hhhcccchhcc-CHHHHHHHHHHHHhCceeeeHHhhhcCchhhHHHHHHHHHhcCCCc
Confidence 8 5 553 6789999999999999999999999999999999999999999996
No 3
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=1.9e-46 Score=335.37 Aligned_cols=170 Identities=22% Similarity=0.360 Sum_probs=149.6
Q ss_pred ccccccceeeeeccccEEEEEccchhhhhhchhHH-------------------HHHHHHHHhhcCCcEEEEecCCcchh
Q 029346 17 SAIRICIITNTVSNFFIVIRLIREGAANRTCENKI-------------------VILLREIRCKLKKSVLGSFDCNPYGI 77 (194)
Q Consensus 17 ~~~~~~~i~~i~~~a~~VLVVEKdavF~~L~~~~f-------------------R~fl~~L~~~~~lpi~~L~D~DP~Gi 77 (194)
+|.+++.++.+.+++++||||||+|||++|++++| |+||++|++++++|+|+++|+||||+
T Consensus 181 Ip~~~~~i~~i~~~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kG~Pd~atR~~L~~L~~~~~~pv~~l~D~Dp~Gi 260 (369)
T 2q2e_A 181 IPFNVENIEFQKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSY 260 (369)
T ss_dssp CCSCSSSCCCCCCCCCCEEEECCTTHHHHHHHSCCTTTTCCCEEECCSSCCHHHHHHHHHHTTSSCCCEEEECCSSHHHH
T ss_pred CCccHHHhhcccCCccEEEEEechHHHHHHHHhccCccCCEEEEECCCCCCHHHHHHHHHHHHhcCCcEEEEecCChhHH
Confidence 44477888888899999999999999999998755 99999999988999999999999999
Q ss_pred HHHHHHhhCCcccccccCCcCCCCeeEeeCCccccccccCCccccccCCHHHHHHHHHHHhcCCcchhccCcHHHHHHHH
Q 029346 78 HILTVYMFGSKNMAGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDLVAFVRSNASWEKELQ 157 (194)
Q Consensus 78 ~I~~tYk~GS~~~~~~~~~~~~p~l~wlGv~~sdl~~~~~~~~~~~~Lt~rD~~~~~~ll~~~~~~~~~~~~~~~~~EL~ 157 (194)
.|++||+|||.+++|++..+++|+++|+|++++|+.++++| ..|||++|++++++++++ |+++ ++.|++|++
T Consensus 261 ~I~~tyk~GS~~~~~~~~~l~~p~~~~lgm~~~d~~~~~~~---~~~Lt~~D~k~l~~ll~~----~~~~-~~~w~~el~ 332 (369)
T 2q2e_A 261 RIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELS---TDKLTEQDVSALRSELSD----PRFE-SDYWKEQIQ 332 (369)
T ss_dssp TTTHHHHSCC--------CCCCTTCBCCSSCTTTTTSSCCC---CCCCCHHHHHHHTTTTSS----CSSC-CTTTTHHHH
T ss_pred HHHHHHhccchhhhhhhcccCCCccEECCCCHHHHHhcccc---cCCCCHHHHHHHHHHhhC----cccC-CHHHHHHHH
Confidence 99999999999999999999999999999999999988775 469999999999999999 6665 678999999
Q ss_pred HHHHhCCeeeEeeeccccccchhhchhHhhhccCCCC
Q 029346 158 KMSKEGEKAEIEALDMYEYKYLANKYLPSKFRAEDWL 194 (194)
Q Consensus 158 ~ml~~~~KaEieal~~~g~~~l~~~Yl~~Ki~~~~~~ 194 (194)
+|++.|+|+||||+.+.|.+|++++|||+||++++||
T Consensus 333 ~ml~~~~K~EqEal~~~g~~~~~~~yl~~Ki~~~~~~ 369 (369)
T 2q2e_A 333 LQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLKEMGMI 369 (369)
T ss_dssp HHHHHCCCCCSGGGGGGCTTSTTTTHHHHHHHSCC--
T ss_pred HHHHhCcEeeehhhhhcCchhhHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999997
No 4
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=46.24 E-value=17 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=33.2
Q ss_pred cEEEEEccchhhhhhchh---------HH--HHHHHHHHhhcCCc-EEEEecCCcchhHHHHHHh
Q 029346 32 FIVIRLIREGAANRTCEN---------KI--VILLREIRCKLKKS-VLGSFDCNPYGIHILTVYM 84 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~---------~f--R~fl~~L~~~~~lp-i~~L~D~DP~Gi~I~~tYk 84 (194)
+.|+|||=-.==.+|.+. |+ ...++.|+. .-. |++|+|+|.-|-.|.....
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~~iI~t~Gtal~~~i~~l~~--~~~~VIIltD~D~aGe~ir~~i~ 83 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEG--KWEKVILLFDLDTHGERINQKMK 83 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTT--TCSEEEECCCSSHHHHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcCcEEEECCCcHHHHHHHHHh--CCCEEEEEECCChhHHHHHHHHH
Confidence 558888843322233222 22 556666643 345 9999999999999987664
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.60 E-value=55 Score=21.95 Aligned_cols=52 Identities=10% Similarity=-0.083 Sum_probs=34.8
Q ss_pred cEEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||-+..+...++. +| ...+..+.+. -|=++++|.+ ..|++.....+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~ 70 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRK 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 369999999887766554 23 6666666542 4667888865 456777666653
No 6
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=43.44 E-value=39 Score=22.74 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=36.8
Q ss_pred cEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++.-+ ...+..+.+. -|=++++|.+ ..|+.++...+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35999999998877665533 6677777653 3677888864 567777777664
No 7
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=41.66 E-value=33 Score=25.65 Aligned_cols=66 Identities=15% Similarity=0.372 Sum_probs=36.9
Q ss_pred hHHHHHHhhCCccc-ccccCCcCCCCeeEeeCCccccccccCCccccccCCHHHHHHHHHHHhcCCcchhccC---cHHH
Q 029346 77 IHILTVYMFGSKNM-AGRNLRLAVPNIKWLGLFPSDLEKYNIPKLCRQILSKDDISKLKTFLEKGDLVAFVRS---NASW 152 (194)
Q Consensus 77 i~I~~tYk~GS~~~-~~~~~~~~~p~l~wlGv~~sdl~~~~~~~~~~~~Lt~rD~~~~~~ll~~~~~~~~~~~---~~~~ 152 (194)
+.|++||.||=... |.. -| .-+|+.++- -.-.||+.++..+...++. .+.-+ ..+.
T Consensus 15 v~~aLt~I~GIG~~~A~~----I~---~~~gi~~~~---------r~~~Lt~~ei~~l~~~i~~----~~~ve~dLrr~~ 74 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKE----AL---EKTGINPAT---------RVKDLTEAEVVRLREYVEN----TWKLEGELRAEV 74 (126)
T ss_dssp HHHHHTTSSSCCSHHHHH----HT---TTTTCCTTS---------BGGGCCHHHHHHHHHHHHT----TSCCHHHHHHHH
T ss_pred eeeehhccccccHHHHHH----HH---HHcCCCccc---------ccCcCCHHHHHHHHHHHHH----hCcchhHHHHHH
Confidence 67899999983221 111 01 113443322 2236999999999999986 23221 2344
Q ss_pred HHHHHHHHHh
Q 029346 153 EKELQKMSKE 162 (194)
Q Consensus 153 ~~EL~~ml~~ 162 (194)
...+++|.+.
T Consensus 75 ~~nIkRL~~I 84 (126)
T 2vqe_M 75 AANIKRLMDI 84 (126)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555565553
No 8
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=41.16 E-value=53 Score=21.19 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=33.5
Q ss_pred EEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
.|||||.+..+....... | ...+..+.+. -|=++++|.+. .|+.+....+.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~ 69 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLRE 69 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 589999998876655442 2 5666666554 36667788653 56776666654
No 9
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.81 E-value=1.1e+02 Score=20.50 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=35.7
Q ss_pred ccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...|||||.+..+...+..-+ ...+..+.+. -|=++++|.+ ..|+++....+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~ 74 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQ 74 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 457999999998877665433 6666666543 3667888865 457777766654
No 10
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=32.84 E-value=15 Score=29.97 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=23.2
Q ss_pred ccccEEEEEccchhhhhhchhHHHHHHHHHHhhcCCcEEEEecCC--cchhH
Q 029346 29 SNFFIVIRLIREGAANRTCENKIVILLREIRCKLKKSVLGSFDCN--PYGIH 78 (194)
Q Consensus 29 ~~a~~VLVVEKdavF~~L~~~~fR~fl~~L~~~~~lpi~~L~D~D--P~Gi~ 78 (194)
...+.|+|+.-..=.+-+.| - ..+++|+++++|.| |.+++
T Consensus 148 ~~Pdllvv~Dp~~e~~ai~E---------a-~~l~IP~IalvDTn~~p~~Vd 189 (218)
T 3r8n_B 148 GLPDALFVIDADHEHIAIKE---------A-NNLGIPVFAIVDTNSDPDGVD 189 (218)
T ss_dssp SCCCSCEEEETGGGHHHHHH---------H-HHHTCCCEEECCSSSCCSSCS
T ss_pred cCCCeEEecCcccccHHHHH---------H-HHhCCCEEEEEeCcCCCcccc
Confidence 34566777764433322222 1 13599999999875 65543
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.40 E-value=83 Score=22.11 Aligned_cols=54 Identities=7% Similarity=-0.122 Sum_probs=36.9
Q ss_pred cccEEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecC---CcchhHHHHHHhh
Q 029346 30 NFFIVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDC---NPYGIHILTVYMF 85 (194)
Q Consensus 30 ~a~~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~---DP~Gi~I~~tYk~ 85 (194)
....|||||.+..+...++.. | ...+..+.+. -|=++++|. |..|++++...+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 345799999999887766543 3 6667666542 366788886 4567887777664
No 12
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.07 E-value=1.1e+02 Score=20.71 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=36.2
Q ss_pred cEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++.-+ ...+..+.....-|=++++|.+ ..|+++....+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 36899999988877665433 6666666642245667888865 457777766653
No 13
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.42 E-value=1.1e+02 Score=20.50 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=35.3
Q ss_pred ccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...|||||.+..+....+.-+ ...+..+.+ .-|=++++|.+ ..|++++...+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRN 75 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 457999999998877665432 666666654 23667888865 457777777664
No 14
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=31.30 E-value=1.4e+02 Score=21.19 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=35.7
Q ss_pred eeeccccEEEEEccchhhhhhchhHH---------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 26 NTVSNFFIVIRLIREGAANRTCENKI---------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 26 ~i~~~a~~VLVVEKdavF~~L~~~~f---------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
.+....-.|||||.+..+...++.-+ ...+..+.+. -|=++++|.+ ..|+.+....+.
T Consensus 20 ~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~l~~~lr~ 95 (164)
T 3t8y_A 20 HMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEALKLIMK 95 (164)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred ccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 33344557999999988776655422 5666666553 3667888864 456777666654
No 15
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=31.02 E-value=12 Score=31.36 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=12.0
Q ss_pred cCCcEEEEecC--Ccchh
Q 029346 62 LKKSVLGSFDC--NPYGI 77 (194)
Q Consensus 62 ~~lpi~~L~D~--DP~Gi 77 (194)
+++|+++++|. ||.++
T Consensus 180 l~IPvIaivDTn~dp~~V 197 (256)
T 2vqe_B 180 LFIPVIALADTDSDPDLV 197 (256)
T ss_dssp TTCCCEECCCTTSCGGGC
T ss_pred cCCCEEEEecCCCCchhc
Confidence 58999999984 55443
No 16
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=31.02 E-value=1.1e+02 Score=20.03 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=35.3
Q ss_pred EEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC----cchhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN----PYGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D----P~Gi~I~~tYk~ 85 (194)
.|||||.+..+...+...+ ...+..+.+. -|=++++|.+ ..|+++....+.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 6999999998776665433 6666666553 3667788875 357777777665
No 17
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.62 E-value=80 Score=21.66 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=35.5
Q ss_pred ccEEEEEccchhhhhhchhHH---------------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI---------------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f---------------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
...|||||.+..+...++..+ ...+..+.+ .-|=++++|.+- .|+......+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRK 75 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 346999999988877665433 566666654 346788889764 46666666554
No 18
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=29.94 E-value=1e+02 Score=21.43 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=37.1
Q ss_pred ccccEEEEEccchhhhhhchhHH---------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 29 SNFFIVIRLIREGAANRTCENKI---------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 29 ~~a~~VLVVEKdavF~~L~~~~f---------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...-.|||||.+..+...++.-+ ...+..+.+ .-|=++++|.+ ..|++++...+.
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~ 90 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRS 90 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 34557999999998877655422 667776654 34778888865 467777776664
No 19
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=29.77 E-value=1e+02 Score=21.07 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=36.4
Q ss_pred ccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC----cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN----PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D----P~Gi~I~~tYk~ 85 (194)
...|||||.+..+...++.-+ ...+..+.+. .-|=++++|.+ ..|+.++...+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQ 75 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHh
Confidence 356999999998877665533 6667676542 34667888874 457777766653
No 20
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=29.12 E-value=1e+02 Score=20.62 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=35.7
Q ss_pred cEEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||-+..+..+... +| ...+..+.+ .-|=++++|.+ -.|++.....+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~ 70 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQE 70 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHh
Confidence 369999999988776654 23 666666654 34667888964 467777776654
No 21
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=27.94 E-value=45 Score=28.73 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=32.4
Q ss_pred eccccEEEEEccchhhhhhc--hh---HHHHHHHHHHhhc-CCc-EEEEecCCcchh
Q 029346 28 VSNFFIVIRLIREGAANRTC--EN---KIVILLREIRCKL-KKS-VLGSFDCNPYGI 77 (194)
Q Consensus 28 ~~~a~~VLVVEKdavF~~L~--~~---~fR~fl~~L~~~~-~lp-i~~L~D~DP~Gi 77 (194)
-.+.+.|+|||.|+.-+-=| .. .++..|+.--+.+ .+| ++..+|+=-.|.
T Consensus 129 i~~~~~vvIlEPDsL~nl~C~~~~~~~~y~~~l~yAv~~L~~~pnv~vYlDaGh~gW 185 (315)
T 1uoz_A 129 LGSSPATIIVEPDALAMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDAGHSRW 185 (315)
T ss_dssp HTTCCEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHTTSTTEEEEEECCCTTS
T ss_pred hCCCceEEEECCcccccccCcchhhhHHHHHHHHHHHHHhccCCCeEEEEeCCCccc
Confidence 36778999999999987645 21 2233333333333 244 888899877765
No 22
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=27.85 E-value=1.3e+02 Score=19.55 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=32.8
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
.|||||.+..+....+. +| ...+..+.+. -|=++++|.+- .|++.....+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~ 69 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRK 69 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHh
Confidence 58999998877655543 23 5566666543 35677888653 57777766653
No 23
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=27.72 E-value=1.2e+02 Score=19.92 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=33.3
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
.|||||.+..+...... +| ...+..+.. .-|=++++|.+- .|++.....+.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELRE 71 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 58999999877655443 33 566666654 236677888753 57777666654
No 24
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=27.68 E-value=1.1e+02 Score=20.08 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=33.2
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
.|||||.+..+...... +| ...+..+... -|=++++|.+- .|++.....+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~ 70 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRE 70 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHh
Confidence 58999999877665543 33 5666666542 35567888653 57777776654
No 25
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.67 E-value=1.3e+02 Score=19.99 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=35.7
Q ss_pred cEEEEEccchhhhhhchh----HH--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCEN----KI--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~----~f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++. +| ...+..+.+. -|=++++|.+ ..|+++....+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLSGEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 469999999887766544 33 6666666553 3667888865 457777777665
No 26
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=27.43 E-value=1.1e+02 Score=20.55 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=33.8
Q ss_pred EEEEEccchhhhhhchhHH--------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCENKI--------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~~f--------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
.|||||.+..+....+.-+ ...+..+.+. -|=++++|.+ ..|++.....+.
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHh
Confidence 4899999988877665433 4455555543 3667888865 457777776664
No 27
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.11 E-value=1.1e+02 Score=21.19 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=37.4
Q ss_pred cccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 30 NFFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 30 ~a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
....|||||.+..+...++..+ ...+..+.+. -|=++++|.+ ..|++++...+.
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~ 82 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLARIHQ 82 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHh
Confidence 3457999999998877766533 6677777553 4667888865 456777766654
No 28
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=26.98 E-value=16 Score=30.35 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=12.5
Q ss_pred hcCCcEEEEec--CCcchh
Q 029346 61 KLKKSVLGSFD--CNPYGI 77 (194)
Q Consensus 61 ~~~lpi~~L~D--~DP~Gi 77 (194)
.+++|+++++| +||.++
T Consensus 135 ~l~IPvIalvDTn~~p~~V 153 (241)
T 2xzm_B 135 YVNIPVIALCDSDSPLAYV 153 (241)
T ss_dssp TTTCCEEECCCSSSCCTTC
T ss_pred HhCCCEEEEecCCCCcccc
Confidence 35999999998 455443
No 29
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=26.87 E-value=91 Score=24.36 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=14.1
Q ss_pred cEEEEEccchhhhhhchh
Q 029346 32 FIVIRLIREGAANRTCEN 49 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~ 49 (194)
..|||||-+..+...+..
T Consensus 38 ~~ILivdd~~~~~~~l~~ 55 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRM 55 (249)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHH
Confidence 469999999988766554
No 30
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=26.75 E-value=1.2e+02 Score=19.72 Aligned_cols=50 Identities=22% Similarity=0.103 Sum_probs=30.7
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYM 84 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk 84 (194)
.|||||-+..+...... +| ...+..+... -|=++++|.+ ..|++.....+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~ 68 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLR 68 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 48899998877655443 22 4444444432 3556777864 46777776665
No 31
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.58 E-value=1.5e+02 Score=19.92 Aligned_cols=52 Identities=12% Similarity=-0.053 Sum_probs=36.3
Q ss_pred cEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
-.|||||.+..+...++.-+ ...+..+.+. -|=++++|.+ ..|++++...+.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKA 75 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46999999998877665533 6677777654 3667888865 457777776664
No 32
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=26.33 E-value=17 Score=29.86 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=11.6
Q ss_pred cCCcEEEEecC--Ccchh
Q 029346 62 LKKSVLGSFDC--NPYGI 77 (194)
Q Consensus 62 ~~lpi~~L~D~--DP~Gi 77 (194)
+++|+++++|. ||.++
T Consensus 179 l~IPvIaivDTn~dp~~V 196 (231)
T 3bbn_B 179 LGIPTICLIDTNCNPDLA 196 (231)
T ss_dssp TTCCEEECCCSSSCCSSC
T ss_pred hCCCEEEEecCCCCccce
Confidence 58999999965 45544
No 33
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.33 E-value=1.6e+02 Score=20.26 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=36.6
Q ss_pred ccccEEEEEccchhhhhhchhHH---------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 29 SNFFIVIRLIREGAANRTCENKI---------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 29 ~~a~~VLVVEKdavF~~L~~~~f---------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
.....|||||.+..+...+..-+ ...+..+.+. -|=++++|.+ ..|+++....+.
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~ 85 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRS 85 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34557999999998776655422 6666666653 3667888855 457777766654
No 34
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.26 E-value=1.6e+02 Score=20.08 Aligned_cols=53 Identities=8% Similarity=0.007 Sum_probs=35.9
Q ss_pred ccEEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...|||||.+..+...+... | ...+..+.+. -|=++++|.+ ..|+.++...+.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 34699999998877655542 3 6666666654 3677888865 467777776664
No 35
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=26.08 E-value=67 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHhcCCcchhccC---cHHHHHHHHHHHHh
Q 029346 124 ILSKDDISKLKTFLEKGDLVAFVRS---NASWEKELQKMSKE 162 (194)
Q Consensus 124 ~Lt~rD~~~~~~ll~~~~~~~~~~~---~~~~~~EL~~ml~~ 162 (194)
.||+.++.++.+.++. +.-. ..++...+++|.+.
T Consensus 46 ~Lt~~ei~~l~~~i~~-----~~ie~dLr~~~~~dI~RL~~I 82 (114)
T 3r8n_M 46 ELSEGQIDTLRDEVAK-----FVVEGDLRREISMSIKRLMDL 82 (114)
T ss_dssp TCCHHHHHHHHHHHSS-----SCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHh
Confidence 6999999999999965 2211 23445555555543
No 36
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.81 E-value=25 Score=28.39 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=12.8
Q ss_pred hcCCcEEEEecCC--cchh
Q 029346 61 KLKKSVLGSFDCN--PYGI 77 (194)
Q Consensus 61 ~~~lpi~~L~D~D--P~Gi 77 (194)
.+++|+++|+|.| |.++
T Consensus 132 ~l~IP~Ial~DTn~~p~~V 150 (202)
T 3j20_B 132 EIGIPIVALVDTENLLSYV 150 (202)
T ss_dssp HHTCCEEEEECTTCCCTTC
T ss_pred HcCCCEEEEEcCCCCcccc
Confidence 3599999999876 5443
No 37
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=25.14 E-value=1.2e+02 Score=20.45 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=36.4
Q ss_pred ccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...|||||.+..+...++.-+ ...+..+.+. .-|=++++|.+ ..|+++....+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~ 76 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRA 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHh
Confidence 457999999998877665433 5566666542 23778899975 456777766654
No 38
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.86 E-value=1.2e+02 Score=20.03 Aligned_cols=51 Identities=8% Similarity=-0.064 Sum_probs=31.6
Q ss_pred EEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
.|||||-+..+....... | ...+..+.. .-|=++++|.+ -.|++.....+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRR 70 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 589999998776655432 2 444444432 24667788864 357777766654
No 39
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.55 E-value=1.6e+02 Score=19.67 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=35.5
Q ss_pred cEEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecCC--------cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDCN--------PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~D--------P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++.. | ...+..+.+. -|=++++|.+ ..|++.+...+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHh
Confidence 4589999998877655442 3 6677777653 4788888975 357777666653
No 40
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.28 E-value=1.1e+02 Score=22.10 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=35.8
Q ss_pred EEEEEccchhhhhhchh-----HH---------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCEN-----KI---------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f---------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
.|||||-+.....+++. || ..-+..+.+. -|=+++.|.. -.|++.+..-+.
T Consensus 14 rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~ 81 (134)
T 3to5_A 14 KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRA 81 (134)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 59999999998877754 33 5555555543 3567888875 467788877764
No 41
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.29 E-value=1.4e+02 Score=20.66 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=33.0
Q ss_pred ccEEEEEccchhhhhhchhH-----H--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENK-----I--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~-----f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
...|||||.+..+...+..- | ...+..+.. .-|=++++|.+. .|+.++...+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~ 71 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILA 71 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34689999998877655442 2 445554443 346678888653 56776666653
No 42
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.11 E-value=67 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHhc
Q 029346 124 ILSKDDISKLKTFLEK 139 (194)
Q Consensus 124 ~Lt~rD~~~~~~ll~~ 139 (194)
.||+.++..+...++.
T Consensus 53 ~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 53 YLTDEQVKKIEEILAD 68 (148)
T ss_dssp BCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhc
Confidence 6999999999999986
No 43
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.01 E-value=1.8e+02 Score=19.58 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=36.5
Q ss_pred ccEEEEEccchhhhhhchhHH-------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 31 FFIVIRLIREGAANRTCENKI-------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 31 a~~VLVVEKdavF~~L~~~~f-------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
...|||||.+..+...++.-+ ...+..+.+. -|=++++|.+ ..|++++...+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 357999999998887765433 6667777553 3667888864 467777766654
No 44
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.92 E-value=1.7e+02 Score=19.44 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=33.9
Q ss_pred cEEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
..|||||.+..+...+.. +| ...+..+... -|=++++|.+- .|++.....+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQ 71 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHc
Confidence 468999999887665543 23 5566666543 35667888754 57777666654
No 45
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.74 E-value=1.7e+02 Score=19.21 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=33.3
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYM 84 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk 84 (194)
.|||||-+..+....+. +| ...+..+... -|=++++|.+- .|++.....+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~ 70 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMK 70 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHH
Confidence 58999999887765544 33 5566666543 36788888754 5676666554
No 46
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.64 E-value=90 Score=21.27 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=32.7
Q ss_pred cEEEEEccchhhhhhchhHH------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENKI------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~f------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++.-+ ...+..+.+. -|=++++|.+ ..|+.+....+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 46999999998877665433 6666666553 3667888865 456666666553
No 47
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=22.61 E-value=1.2e+02 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHhhc-CCcEEEEecCCcchhHHHHHHh
Q 029346 55 LREIRCKL-KKSVLGSFDCNPYGIHILTVYM 84 (194)
Q Consensus 55 l~~L~~~~-~lpi~~L~D~DP~Gi~I~~tYk 84 (194)
+..+.+.. .-.+++|+|+|.-|=.|....+
T Consensus 41 l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~ 71 (119)
T 2fcj_A 41 LEELADELEGYDVYLLADADEAGEKLRRQFR 71 (119)
T ss_dssp HHHHHHHTTTSEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccHHHHHHHHH
Confidence 33444433 5689999999999999998554
No 48
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=22.32 E-value=34 Score=28.57 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=12.9
Q ss_pred hcCCcEEEEecCC--cchh
Q 029346 61 KLKKSVLGSFDCN--PYGI 77 (194)
Q Consensus 61 ~~~lpi~~L~D~D--P~Gi 77 (194)
.+++|+++|+|.| |..+
T Consensus 138 ~l~IP~Ial~DTn~~p~~V 156 (252)
T 3u5c_A 138 YVNIPVIALTDLDSPSEFV 156 (252)
T ss_dssp TTTCCEEEEECTTCCCTTC
T ss_pred HcCCCEEEEEcCCCCcccC
Confidence 3599999999876 5444
No 49
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.13 E-value=1.8e+02 Score=20.32 Aligned_cols=54 Identities=11% Similarity=0.005 Sum_probs=36.3
Q ss_pred cEEEEEccchhhhhhchhHH--------------HHHHHHHHhhcCCcEEEEecCC---cchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCENKI--------------VILLREIRCKLKKSVLGSFDCN---PYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~~f--------------R~fl~~L~~~~~lpi~~L~D~D---P~Gi~I~~tYk~ 85 (194)
..|||||.+..+...++..+ ...+..+.+...-|=++++|.+ -.|++++...+.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 107 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIME 107 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHh
Confidence 47999999998877665432 6677777654223567888865 456777666653
No 50
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.82 E-value=1.7e+02 Score=19.86 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=33.7
Q ss_pred EEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecCCc---chhHHHHHHhh
Q 029346 33 IVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDCNP---YGIHILTVYMF 85 (194)
Q Consensus 33 ~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~DP---~Gi~I~~tYk~ 85 (194)
.|||||-+..+...+.. +| ...+..+.. .-|=++++|.+- .|++.....+.
T Consensus 6 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 58999999877665443 33 666666654 346677888653 67777766653
No 51
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.37 E-value=1.7e+02 Score=21.23 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=35.5
Q ss_pred cEEEEEccchhhhhhchh-----HH--------HHHHHHHHhhcCCcEEEEecC---CcchhHHHHHHhh
Q 029346 32 FIVIRLIREGAANRTCEN-----KI--------VILLREIRCKLKKSVLGSFDC---NPYGIHILTVYMF 85 (194)
Q Consensus 32 ~~VLVVEKdavF~~L~~~-----~f--------R~fl~~L~~~~~lpi~~L~D~---DP~Gi~I~~tYk~ 85 (194)
..|||||-+..+...+.. +| ...+..+.. .-|=++++|. |-.|++.+...+.
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~ 75 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCD 75 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHh
Confidence 469999999988776654 33 666666644 3467788885 4467777776654
No 52
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.14 E-value=1.3e+02 Score=22.50 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=14.7
Q ss_pred cccCCHHHHHHHHHHHhc
Q 029346 122 RQILSKDDISKLKTFLEK 139 (194)
Q Consensus 122 ~~~Lt~rD~~~~~~ll~~ 139 (194)
..+||.|+...+.-+.+.
T Consensus 154 ~~~Lt~rE~~vL~~l~~~ 171 (230)
T 2oqr_A 154 TITLPLKEFDLLEYLMRN 171 (230)
T ss_dssp CCCCCHHHHHHHHHHHHT
T ss_pred eeecCHHHHHHHHHHHhC
Confidence 357999999998888775
Done!