Query 029348
Match_columns 194
No_of_seqs 115 out of 540
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00391 transport protein par 100.0 6E-61 1.3E-65 388.0 18.0 167 25-194 1-168 (168)
2 KOG3315 Transport protein part 100.0 5.4E-58 1.2E-62 366.6 15.9 187 2-194 4-190 (191)
3 PF04051 TRAPP: Transport prot 100.0 3.4E-50 7.3E-55 320.6 16.7 151 29-185 1-152 (152)
4 COG5128 Transport protein part 100.0 2.2E-50 4.7E-55 322.9 13.3 184 10-194 25-208 (208)
5 KOG3316 Transport protein part 100.0 3.3E-46 7.1E-51 293.9 11.7 147 28-184 5-162 (163)
6 KOG3330 Transport protein part 100.0 1.1E-33 2.4E-38 224.2 9.6 167 18-188 9-176 (183)
7 COG1719 Predicted hydrocarbon 95.5 0.43 9.3E-06 38.3 11.9 112 50-184 46-157 (158)
8 TIGR02019 BchJ bacteriochlorop 88.7 2.4 5.2E-05 35.3 7.5 133 22-180 41-188 (188)
9 PF02830 V4R: V4R domain; Int 84.6 1.4 3.1E-05 29.5 3.4 41 139-181 20-61 (62)
10 PF09536 DUF2378: Protein of u 77.3 4.9 0.00011 33.0 4.8 38 139-181 138-176 (178)
11 TIGR02265 Mxa_TIGR02265 Myxoco 71.2 8.1 0.00018 31.8 4.7 38 139-181 139-177 (179)
12 COG2345 Predicted transcriptio 52.7 1.3E+02 0.0027 25.7 8.7 61 113-184 155-215 (218)
13 smart00843 Ftsk_gamma This dom 46.3 54 0.0012 22.5 4.5 41 32-72 5-45 (63)
14 PRK14741 spoVM stage V sporula 46.0 14 0.00031 20.8 1.3 14 142-155 10-23 (26)
15 PF06505 XylR_N: Activator of 45.1 49 0.0011 24.8 4.6 43 24-71 24-66 (103)
16 PF11565 PorB: Alpha helical P 42.9 20 0.00043 26.8 2.1 19 139-157 16-34 (98)
17 PF09397 Ftsk_gamma: Ftsk gamm 38.4 55 0.0012 22.5 3.6 40 33-72 7-46 (65)
18 PF09413 DUF2007: Domain of un 38.4 29 0.00062 23.1 2.2 25 141-165 8-32 (67)
19 PF05266 DUF724: Protein of un 37.5 1.3E+02 0.0029 24.8 6.4 52 23-74 41-103 (190)
20 KOG0037 Ca2+-binding protein, 36.1 1.4E+02 0.003 25.6 6.3 82 22-106 108-199 (221)
21 TIGR01634 tail_P2_I phage tail 30.0 1.1E+02 0.0023 24.2 4.5 37 145-183 78-114 (139)
22 PF11848 DUF3368: Domain of un 24.7 80 0.0017 20.0 2.4 25 47-71 20-44 (48)
23 PF10026 DUF2268: Predicted Zn 23.9 37 0.00079 27.8 0.9 19 56-74 160-178 (195)
24 PF08183 SpoV: Stage V sporula 23.4 53 0.0012 18.7 1.2 15 142-156 10-24 (26)
25 COG4009 Uncharacterized protei 23.0 59 0.0013 23.6 1.7 18 47-64 61-78 (88)
26 cd03572 ENTH_epsin_related ENT 20.9 2.2E+02 0.0048 21.9 4.6 50 31-94 19-69 (122)
27 PHA03081 putative metalloprote 20.5 15 0.00032 35.2 -2.4 12 139-150 499-510 (595)
28 PF03410 Peptidase_M44: Protei 20.2 15 0.00032 35.1 -2.4 13 139-151 495-507 (590)
No 1
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=6e-61 Score=387.95 Aligned_cols=167 Identities=52% Similarity=0.825 Sum_probs=159.9
Q ss_pred hcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 029348 25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD 104 (194)
Q Consensus 25 Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D 104 (194)
||+|+|+|||+|||+|+++++++..|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD 80 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cccccc-CCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029348 105 SLEKGT-EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA 183 (194)
Q Consensus 105 ~Le~~t-n~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~ 183 (194)
+| +| ||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+||||+++++..+. +|+|+|||+
T Consensus 81 ~L--kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~-~t~~likf~ 157 (168)
T PTZ00391 81 LL--KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNF-STTILIKFY 157 (168)
T ss_pred hh--cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCC-ceEEEEEec
Confidence 99 56 588999999999999999999999999999999999999999999999999999998776533 999999999
Q ss_pred hHHHHHhhhcC
Q 029348 184 EEVLRREARLG 194 (194)
Q Consensus 184 ~~v~~re~~~~ 194 (194)
++|++||++++
T Consensus 158 ~~v~~Re~~~~ 168 (168)
T PTZ00391 158 PEVIEREKSIQ 168 (168)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 2
>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-58 Score=366.58 Aligned_cols=187 Identities=60% Similarity=0.957 Sum_probs=179.0
Q ss_pred CccCCCCCCCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCcc
Q 029348 2 IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81 (194)
Q Consensus 2 ~~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~ 81 (194)
+..+....+.+|+|+||+++|.|||+|+|+|||+|||+|+++++.++.|++.+|.+.||+||.||+|++..|+|.++|++
T Consensus 4 ~~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREt 83 (191)
T KOG3315|consen 4 IKASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRET 83 (191)
T ss_pred ccccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHH
Confidence 33455566889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEE
Q 029348 82 RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVV 161 (194)
Q Consensus 82 ~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~V 161 (194)
+++++|.||+.++|+++|||.+|.|||.+++..+|+|+|++|++++|||+|++++.+||++|+||||+|+|++.||||.|
T Consensus 84 kilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckV 163 (191)
T KOG3315|consen 84 KILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKV 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCceEEEEEechHHHHHhhhcC
Q 029348 162 TAHFVPVEGQQRPRTTILIKFAEEVLRREARLG 194 (194)
Q Consensus 162 ta~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~ 194 (194)
|||+.| .+|++.|||+++|++||+.++
T Consensus 164 TAh~~P------~gt~~~IkF~~~Viare~~l~ 190 (191)
T KOG3315|consen 164 TAHWHP------EGTTYLIKFDESVIAREGLLE 190 (191)
T ss_pred eeeecC------CCCeEEEEecHHHHhhhhhhc
Confidence 999985 269999999999999999874
No 3
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=3.4e-50 Score=320.61 Aligned_cols=151 Identities=46% Similarity=0.785 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029348 29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK 108 (194)
Q Consensus 29 ~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~ 108 (194)
+|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|
T Consensus 1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l-- 77 (152)
T PF04051_consen 1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL-- 77 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 69999999999999944 899999999999999999999999998667899999999999999999999999999999
Q ss_pred ccCC-CCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029348 109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185 (194)
Q Consensus 109 ~tn~-~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~ 185 (194)
+||| +|+|+|+|++|+|++|+++|++++.++|++|+||||||||+++||+|+|||+..+. ..|+|+|+|||++.
T Consensus 78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~~ 152 (152)
T PF04051_consen 78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEKQ 152 (152)
T ss_dssp EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEHH
T ss_pred cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEecC
Confidence 7898 99999999999999999999988899999999999999999999999999999854 34799999999863
No 4
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-50 Score=322.85 Aligned_cols=184 Identities=41% Similarity=0.709 Sum_probs=176.4
Q ss_pred CCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 029348 10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF 89 (194)
Q Consensus 10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkf 89 (194)
+..||+++|.-.+.+|++|+|+|||.||++|+++..+...+++.+|.++||+||.||+|++..|.++.+|+.+++++|+|
T Consensus 25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~ 104 (208)
T COG5128 25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR 104 (208)
T ss_pred chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence 56789999966679999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 029348 90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE 169 (194)
Q Consensus 90 I~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~ 169 (194)
|+.++|+++||+..|.|||..+...+|+|+||+|++++|||+|+++++++|.+|+||||+|+|.+.||+|.||||..|.+
T Consensus 105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~ 184 (208)
T COG5128 105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE 184 (208)
T ss_pred HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCceEEEEEechHHHHHhhhcC
Q 029348 170 GQQRPRTTILIKFAEEVLRREARLG 194 (194)
Q Consensus 170 ~~~~p~~~f~Ik~~~~v~~re~~~~ 194 (194)
..++ +|+|+|+|++.|++||..++
T Consensus 185 ~~p~-Rtv~lI~~d~~vi~re~v~g 208 (208)
T COG5128 185 NLPN-RTVFLIRIDDLVIAREEVLG 208 (208)
T ss_pred CCCc-ceEEEEEecHHHHhhhhhcC
Confidence 7666 99999999999999998775
No 5
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-46 Score=293.88 Aligned_cols=147 Identities=26% Similarity=0.424 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 029348 28 SAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL 98 (194)
Q Consensus 28 s~f~~L~~EiV~y~~~~~~~---------~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~l 98 (194)
.+|++|+.|||.++.+..+| ..+..++||.|||+||++|.|+++ ++++|+.|.+|+|||||||+|+.+
T Consensus 5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~V 81 (163)
T KOG3316|consen 5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSIV 81 (163)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998886443 234779999999999999999999 578899999999999999999999
Q ss_pred hcccccccccccCCCCeEEEEeCCcccccccccCCCCCC--cchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348 99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (194)
Q Consensus 99 Fgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~--l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~ 176 (194)
|+||+||| +|||+|+||++|+.|+|+..+|...++.. ..|++|+||+|||+|.+||++|.|||++. ..|+|
T Consensus 82 F~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPtc 154 (163)
T KOG3316|consen 82 FKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPTC 154 (163)
T ss_pred Hhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCce
Confidence 99999999 99999999999999999999996666532 25999999999999999999999999987 68999
Q ss_pred EEEEEech
Q 029348 177 TILIKFAE 184 (194)
Q Consensus 177 ~f~Ik~~~ 184 (194)
.|+|++.+
T Consensus 155 kFhV~v~~ 162 (163)
T KOG3316|consen 155 KFHVQVQP 162 (163)
T ss_pred EEEEEecC
Confidence 99999875
No 6
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=224.25 Aligned_cols=167 Identities=14% Similarity=0.299 Sum_probs=149.7
Q ss_pred CcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 029348 18 LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV 97 (194)
Q Consensus 18 ~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~ 97 (194)
+-+.-.++|+++|+++|++||.++.+++++.++++.+|++|||+||.||+|.+++|+ +.+||.|+.++...|||..+|+
T Consensus 9 i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkm 87 (183)
T KOG3330|consen 9 IAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKM 87 (183)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhhe
Confidence 333347899999999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred hhcccccccccccCCCCeEEEEeCCcccccccccCC-CCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348 98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (194)
Q Consensus 98 lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~-~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~ 176 (194)
++|.++..- .|+.+.++|.|+=.++|+..||+.|+ ..+.++|++++||+|||||+++++.|.|+ |..|-++++..|
T Consensus 88 yLgitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~t 164 (183)
T KOG3330|consen 88 YLGITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVT 164 (183)
T ss_pred eeeccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCce
Confidence 999998766 37888899988755556689996665 45679999999999999999999999998 888999999899
Q ss_pred EEEEEechHHHH
Q 029348 177 TILIKFAEEVLR 188 (194)
Q Consensus 177 ~f~Ik~~~~v~~ 188 (194)
++.|+|.+.+.+
T Consensus 165 EIrv~f~r~lkd 176 (183)
T KOG3330|consen 165 EIRVRFLRILKD 176 (183)
T ss_pred eeeeeHHHHHhh
Confidence 999999987754
No 7
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=95.47 E-value=0.43 Score=38.33 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCccccccc
Q 029348 50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI 129 (194)
Q Consensus 50 e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~v 129 (194)
.....+.+.|+.+|..++. .....++..|+.- |...++.-.+.- .+...+..+.|..+. -
T Consensus 46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~ 105 (158)
T COG1719 46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A 105 (158)
T ss_pred CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence 3567788899999998886 1122234444433 887777655433 222455555555543 1
Q ss_pred ccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348 130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (194)
Q Consensus 130 s~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (194)
-+|. .+.+-..|.+|+|.|+|+...=+ .+.++=+.....+.+.|.|.|+..+
T Consensus 106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k-~~~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 106 GLPG--IGEPVCHLEAGFIAGFLEEILGK-KVEVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred cCCC--CCCcchhHHhhHHHHHHHHHhCC-CeEEEEEEEeecCCCceEEEEEecC
Confidence 2344 23456789999999999986332 2222333444557889999998754
No 8
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=88.68 E-value=2.4 Score=35.26 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHHH-------HHHHHH
Q 029348 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGIL-------SFVHST 93 (194)
Q Consensus 22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL-~E~l~~r~k~~~r~~~~ld~l-------kfI~k~ 93 (194)
..=|+.+.|.-|+..+=+.+ ..+....-|.+.|.+.|.++ ..++.- ...+..+.++.. .-|.|+
T Consensus 41 ~~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~ 112 (188)
T TIGR02019 41 SGMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKH 112 (188)
T ss_pred hhcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHH
Confidence 34477777777766653322 11245566777787777777 444331 122334444443 345889
Q ss_pred HHHHhhcccccccccccCCCCeEEEEeCCcccccc-c-----ccCCCCCCcchhhhhHHHHHHHhhhC-CCCeEEEEEEc
Q 029348 94 VWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRF-I-----SIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFV 166 (194)
Q Consensus 94 ~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~-v-----s~p~~~~~l~~~~f~~GiIrGaL~~l-g~~~~Vta~~~ 166 (194)
+|+.- .-|.|-.....|+..+- - ..|. +..-.+|-+|+++|.++.+ +=++.|. =+
T Consensus 113 aWtf~-------------G~G~fs~~~~~~l~i~I~ds~~a~~~~~---~~P~C~~~aGife~lFs~lv~~~~~v~--Et 174 (188)
T TIGR02019 113 AWTFA-------------GSGKFRYVSGPPLSFEIARNPVVAGESS---DTPVCHWYAAVFERLLRRLVWPHVAVR--ET 174 (188)
T ss_pred HHhhc-------------ccceEEEeeCCCeEEEEecChhhhcCCC---CCceeeeeHHHHHHHHHHHhCCCceEE--ee
Confidence 99432 11233333333321110 0 1111 2334679999999999876 5556654 33
Q ss_pred cCCCCCCCceEEEE
Q 029348 167 PVEGQQRPRTTILI 180 (194)
Q Consensus 167 ~~~~~~~p~~~f~I 180 (194)
.....+.+.|.|.|
T Consensus 175 ~C~a~G~~~C~F~~ 188 (188)
T TIGR02019 175 ACCAKGAPRCRFEL 188 (188)
T ss_pred hHhhcCCCcceeeC
Confidence 34455778999974
No 9
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=84.62 E-value=1.4 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=27.1
Q ss_pred chhhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEEEEE
Q 029348 139 NCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTILIK 181 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f~Ik 181 (194)
.-..|.+|++.|+++.+ |-+..|+ =+.-...+++.|.|.|+
T Consensus 20 p~C~~~~G~~~G~~~~~~~~~~~v~--E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 20 PVCWFTAGYLAGFFSALFGKEVEVE--ETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp ---HHHHHHHHHHHHHHHSSEEEEE--EEE-GGGT-SSEEEEEE
T ss_pred ceEHHHHHHHHHHHHHHhCCceEEE--EeEEEcCCCCeeEEEEE
Confidence 34579999999999765 5555544 44455668889999986
No 10
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=77.28 E-value=4.9 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=29.4
Q ss_pred chhhhhHHHHHHHhhhCCCCe-EEEEEEccCCCCCCCceEEEEE
Q 029348 139 NCGAFVAGIVRGVLDSAGFPA-VVTAHFVPVEGQQRPRTTILIK 181 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~lg~~~-~Vta~~~~~~~~~~p~~~f~Ik 181 (194)
..-.|.+|+++|+|...|-+. +|+..-. +...|+|.|.
T Consensus 138 ~~p~f~~G~l~~~L~~~Ga~~~~V~~~~~-----~~~~~~y~i~ 176 (178)
T PF09536_consen 138 MPPAFHEGVLEAALEAAGARGPRVRVRER-----GGDDAEYRIR 176 (178)
T ss_pred CChHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCceEEEEE
Confidence 356799999999999999994 7764432 3358999885
No 11
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=71.23 E-value=8.1 Score=31.81 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.0
Q ss_pred chhhhhHHHHHHHhhhCC-CCeEEEEEEccCCCCCCCceEEEEE
Q 029348 139 NCGAFVAGIVRGVLDSAG-FPAVVTAHFVPVEGQQRPRTTILIK 181 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~lg-~~~~Vta~~~~~~~~~~p~~~f~Ik 181 (194)
....|.+|+++|+|+..| -..+|...-. +...|+|.|.
T Consensus 139 ~~~~f~~G~l~~aLe~~Ga~~~~V~~~~~-----g~~~~~y~i~ 177 (179)
T TIGR02265 139 MPPAYHEGVLHAALRAVGARDVRVRGRAF-----GGLDATYRLS 177 (179)
T ss_pred CchHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCCceEEEE
Confidence 347899999999999999 3356653332 3358999986
No 12
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=52.67 E-value=1.3e+02 Score=25.69 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348 113 EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (194)
Q Consensus 113 ~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (194)
+|.|.|..+|=|+. .+.++.. .-.+.-+++++++|-. ...+.+++... +...|+|.|+..+
T Consensus 155 ~~~~~l~e~nCPi~---~vA~~~~--~~C~~e~~~~~~~Lg~--~~v~~~~~~~~----g~~~C~~~v~~~~ 215 (218)
T COG2345 155 NGRVQLIEHNCPIS---AVAEEFP--VACESELALFAEVLGT--AHVERTEHILD----GPGRCTYHVKLES 215 (218)
T ss_pred CCceEEEecCCchH---HHHHHhH--HHHHHHHHHHHHHhcc--CCccceeeeec----CCCceEEEeecCC
Confidence 68898887775422 2222211 1234556777777765 55566655552 4469999998764
No 13
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=46.31 E-value=54 Score=22.49 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029348 32 FLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (194)
Q Consensus 32 ~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~ 72 (194)
=||.+.+++..+........-++=-++||+=..||+|.+-.
T Consensus 5 ~ly~~a~~~V~~~~~~S~S~lQR~~~IGynrAariid~lE~ 45 (63)
T smart00843 5 ELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEE 45 (63)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHhcchhHHHHHHHHHHH
Confidence 47888899887765533345555668999999999999885
No 14
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=45.96 E-value=14 Score=20.80 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=12.0
Q ss_pred hhhHHHHHHHhhhC
Q 029348 142 AFVAGIVRGVLDSA 155 (194)
Q Consensus 142 ~f~~GiIrGaL~~l 155 (194)
-|+.|+||++|.++
T Consensus 10 kflgg~vra~l~~f 23 (26)
T PRK14741 10 KFLGGIVRAMLGSF 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 47899999999875
No 15
>PF06505 XylR_N: Activator of aromatic catabolism; InterPro: IPR010523 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to IPR004096 from INTERPRO.
Probab=45.06 E-value=49 Score=24.75 Aligned_cols=43 Identities=30% Similarity=0.251 Sum_probs=35.8
Q ss_pred hhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhh
Q 029348 24 EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71 (194)
Q Consensus 24 ~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~ 71 (194)
-+..+++..|.-|+|+.+=. +....-|-++||.-|.+-+|.+.
T Consensus 24 L~~~~alg~LRkELi~~lG~-----~~AR~iltR~Gy~~G~~DAe~~~ 66 (103)
T PF06505_consen 24 LMHASALGALRKELIETLGE-----ERARGILTRMGYASGWRDAELAR 66 (103)
T ss_pred EEchhHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999976432 34667899999999999999987
No 16
>PF11565 PorB: Alpha helical Porin B; InterPro: IPR021114 This entry represents the putative cell wall channel-forming proteins porin B and porin C from Corynebacterium sp. Porin B from Corynebacterium glutamicum (Brevibacterium flavum) allows the exchange of material across the mycolic acid layer, which is the protective nonpolar barrier. Porin B has an alpha helical core structure consisting of four alpha-helices surrounding a nonpolar interior. There is a disulphide bridge between helices 1 and 4 to form a stable covalently bound ring []. The channel of PorB is oligomeric [].; PDB: 2VQG_G 2VQL_C 2VQK_A 2VQH_A.
Probab=42.87 E-value=20 Score=26.82 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.4
Q ss_pred chhhhhHHHHHHHhhhCCC
Q 029348 139 NCGAFVAGIVRGVLDSAGF 157 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~lg~ 157 (194)
-+..+-||++|++|...|+
T Consensus 16 ~i~~~dC~~lr~~L~~~Gl 34 (98)
T PF11565_consen 16 LIDNADCGILRTGLKATGL 34 (98)
T ss_dssp GGSHHHHHHHHHHHHHTT-
T ss_pred ccCcccccHHHhhhhhhcc
Confidence 3788999999999999984
No 17
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=38.39 E-value=55 Score=22.51 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029348 33 LFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (194)
Q Consensus 33 L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~ 72 (194)
||-+.+++......-....-++=-++||+=..||+|.+-.
T Consensus 7 ly~~a~~~V~~~~~~S~S~lQR~~rIGynrAariid~LE~ 46 (65)
T PF09397_consen 7 LYEEAVEFVIEEGKASISLLQRKFRIGYNRAARIIDQLEE 46 (65)
T ss_dssp THHHHHHHHHHCTCECHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6778888877755433345566678999999999999874
No 18
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.39 E-value=29 Score=23.05 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHhhhCCCCeEEEEEE
Q 029348 141 GAFVAGIVRGVLDSAGFPAVVTAHF 165 (194)
Q Consensus 141 ~~f~~GiIrGaL~~lg~~~~Vta~~ 165 (194)
..+-|.+|++.|+.-|++|.|.-+.
T Consensus 8 ~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 8 DPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp -HHHHHHHHHHHHHTT--EE--S--
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCc
Confidence 3577999999999999999986443
No 19
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.45 E-value=1.3e+02 Score=24.83 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=36.7
Q ss_pred chhcHHHHHHHHHHHHHHHHhhc-CC-hH------HHHHHHHHhhhhhhH---HHHHHhhhhc
Q 029348 23 QEVSLSAFAFLFSELVQYNQTQV-DN-IA------ELERRLEDAGYAVGA---RVLELLCHRD 74 (194)
Q Consensus 23 ~~Vs~s~f~~L~~EiV~y~~~~~-~~-~~------e~~~~Le~mGy~VG~---rL~E~l~~r~ 74 (194)
++-.+.-.-++|+.++.-..+-. +| .. ..-..||.+||+|+. ||-+++..++
T Consensus 41 REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 41 REGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 56677777888888887655533 22 22 234789999999994 8888888765
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=36.14 E-value=1.4e+02 Score=25.59 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=56.1
Q ss_pred cchhcHHHHHHHHHHHHHH--HHhhcC-------ChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCc-cchHHHHHHHH
Q 029348 22 KQEVSLSAFAFLFSELVQY--NQTQVD-------NIAELERRLEDAGYAVGARVLELLCHRDKGNRRE-TRLLGILSFVH 91 (194)
Q Consensus 22 ~~~Vs~s~f~~L~~EiV~y--~~~~~~-------~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~-~~~ld~lkfI~ 91 (194)
..+|+..-|..|+.-|=+| +.++.+ +..|+.+-|..|||++-.-+.+.+.-|- -+. ...+..-+||.
T Consensus 108 ~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky---d~~~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY---DRFGGGRIDFDDFIQ 184 (221)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh---ccccCCceeHHHHHH
Confidence 3558999999999988776 334333 3579999999999999999999988553 122 34445556666
Q ss_pred HHHHHHhhccccccc
Q 029348 92 STVWKVLFGKVADSL 106 (194)
Q Consensus 92 k~~W~~lFgk~~D~L 106 (194)
=-+|..-+-+.-...
T Consensus 185 ccv~L~~lt~~Fr~~ 199 (221)
T KOG0037|consen 185 CCVVLQRLTEAFRRR 199 (221)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665544333333
No 21
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=30.03 E-value=1.1e+02 Score=24.16 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029348 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA 183 (194)
Q Consensus 145 ~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~ 183 (194)
-+.||-+|+.+|...+|+-.+. ..+.+.|. +|.|.+.
T Consensus 78 ~~avr~~l~~lg~~~~i~EW~e-~~p~g~P~-tF~i~~~ 114 (139)
T TIGR01634 78 IGAVRRVVEPFGGIVNITEWWQ-TGPPGPPG-TFELTLT 114 (139)
T ss_pred HHHHHHHHHHcCCCeEEeehhc-cCCCCCCe-EEEEEEE
Confidence 4667889999999999985553 33334444 7887754
No 22
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.70 E-value=80 Score=20.00 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHhhhhhhHHHHHHhh
Q 029348 47 NIAELERRLEDAGYAVGARVLELLC 71 (194)
Q Consensus 47 ~~~e~~~~Le~mGy~VG~rL~E~l~ 71 (194)
+..+.-++|.+.||.++.++++.++
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4556778899999999999999887
No 23
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=23.94 E-value=37 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.0
Q ss_pred HHhhhhhhHHHHHHhhhhc
Q 029348 56 EDAGYAVGARVLELLCHRD 74 (194)
Q Consensus 56 e~mGy~VG~rL~E~l~~r~ 74 (194)
..+||.+|.+|++.++.+.
T Consensus 160 ~~~GY~~GY~iVk~yl~~~ 178 (195)
T PF10026_consen 160 RWLGYALGYRIVKAYLEKH 178 (195)
T ss_pred ccchHHHHHHHHHHHHHHC
Confidence 3489999999999999654
No 24
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=23.43 E-value=53 Score=18.66 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.1
Q ss_pred hhhHHHHHHHhhhCC
Q 029348 142 AFVAGIVRGVLDSAG 156 (194)
Q Consensus 142 ~f~~GiIrGaL~~lg 156 (194)
-|+.|+|++.|.++.
T Consensus 10 kf~Gg~v~~~L~sf~ 24 (26)
T PF08183_consen 10 KFLGGVVRALLFSFK 24 (26)
T ss_pred HHHhHHHHHHHHHHh
Confidence 378899999998764
No 25
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.00 E-value=59 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHhhhhhhH
Q 029348 47 NIAELERRLEDAGYAVGA 64 (194)
Q Consensus 47 ~~~e~~~~Le~mGy~VG~ 64 (194)
+.+|+++.|++||..|-.
T Consensus 61 s~eev~~ele~mga~in~ 78 (88)
T COG4009 61 SEEEVERELEDMGAEINR 78 (88)
T ss_pred CHHHHHHHHHHhCchhcc
Confidence 457899999999988753
No 26
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.94 E-value=2.2e+02 Score=21.90 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCc-cchHHHHHHHHHHH
Q 029348 31 AFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRE-TRLLGILSFVHSTV 94 (194)
Q Consensus 31 ~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~-~~~ld~lkfI~k~~ 94 (194)
-++|.||.+.......+.. .|...|..+|.-+ .+.- .+.|-+|+++|...
T Consensus 19 gy~~~Eia~~t~~s~~~~~-----------ei~d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQ-----------ELLEYLLKRLKRS---SPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred hHHHHHHHHHHHcCHHHHH-----------HHHHHHHHHhcCC---CCcchHHHHHHHHHHHhhC
Confidence 4678888887766332221 2344455555521 2222 45677777777664
No 27
>PHA03081 putative metalloprotease; Provisional
Probab=20.46 E-value=15 Score=35.17 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=11.1
Q ss_pred chhhhhHHHHHH
Q 029348 139 NCGAFVAGIVRG 150 (194)
Q Consensus 139 ~~~~f~~GiIrG 150 (194)
.+++|+||||+|
T Consensus 499 T~SsFVCGivKG 510 (595)
T PHA03081 499 TKSSFVCGIVKG 510 (595)
T ss_pred EeccEEEEEeec
Confidence 489999999999
No 28
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=20.21 E-value=15 Score=35.11 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=11.7
Q ss_pred chhhhhHHHHHHH
Q 029348 139 NCGAFVAGIVRGV 151 (194)
Q Consensus 139 ~~~~f~~GiIrGa 151 (194)
.+++|+|||++|-
T Consensus 495 t~SsFVCGivKG~ 507 (590)
T PF03410_consen 495 TKSSFVCGIVKGK 507 (590)
T ss_pred EecceEEEEeecc
Confidence 4899999999995
Done!