Query 029348
Match_columns 194
No_of_seqs 115 out of 540
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_B ZGC 92866, trafficking 100.0 6.1E-65 2.1E-69 417.6 18.1 185 3-194 2-186 (188)
2 3cue_B Transport protein parti 100.0 2.7E-56 9.2E-61 383.4 15.3 178 10-192 42-280 (283)
3 2c0j_B R32611_2; palmitate; HE 100.0 2.6E-54 9E-59 346.5 14.2 150 25-184 3-159 (160)
4 1sz7_A BET3 homolog, trafficki 100.0 1.5E-53 5.1E-58 352.5 15.1 163 21-188 19-182 (200)
5 2bjn_A TPC6, trafficking prote 100.0 5.5E-53 1.9E-57 338.8 14.4 152 23-184 2-159 (160)
6 3cue_D Transport protein parti 100.0 4.1E-52 1.4E-56 342.7 15.1 163 21-188 21-186 (193)
7 2oso_A Hypothetical protein MJ 96.4 0.0041 1.4E-07 49.0 4.9 131 22-185 25-160 (163)
8 3tfg_A ALR2278 protein; heme-b 84.5 1.4 4.9E-05 34.8 5.2 45 140-186 141-185 (189)
9 2kii_A Putative uncharacterize 83.9 4.9 0.00017 31.4 8.1 43 140-184 138-180 (181)
10 3sj5_A Methyl-accepting chemot 61.4 6.5 0.00022 31.0 3.4 46 139-185 136-181 (188)
11 2vqg_A Uncharacterized protein 48.7 9.8 0.00034 27.3 2.2 20 139-158 16-35 (99)
12 1gak_A SP18, fertilization pro 33.6 59 0.002 24.5 4.5 48 22-72 3-50 (141)
13 2ve8_A FTSK, DNA translocase F 33.1 58 0.002 22.0 4.1 42 32-73 10-51 (73)
14 3njc_A YSLB protein; NESG, PSI 31.4 70 0.0024 24.8 4.8 104 57-184 50-154 (158)
15 2bnk_A Early protein GP16.7; D 24.8 1.5E+02 0.0051 19.3 4.8 43 50-97 11-55 (67)
16 1jg5_A GTP cyclohydrolase I fe 24.8 32 0.0011 23.9 1.6 15 48-62 52-66 (83)
No 1
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=6.1e-65 Score=417.56 Aligned_cols=185 Identities=48% Similarity=0.802 Sum_probs=160.3
Q ss_pred ccCCCCCCCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029348 3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82 (194)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~ 82 (194)
+++.+++.++|+||||++++.+||+|+|+|||+|||+|++++.++.+|++++|++|||+||.||+|++++|++..+||++
T Consensus 2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d 81 (188)
T 2j3w_B 2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK 81 (188)
T ss_dssp -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999876699999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEE
Q 029348 83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT 162 (194)
Q Consensus 83 ~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vt 162 (194)
++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus 82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt 161 (188)
T 2j3w_B 82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT 161 (188)
T ss_dssp HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence 99999999999999999999999975599999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCceEEEEEechHHHHHhhhcC
Q 029348 163 AHFVPVEGQQRPRTTILIKFAEEVLRREARLG 194 (194)
Q Consensus 163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~ 194 (194)
||+ +|+|+|+|||+++|++||++|+
T Consensus 162 a~~-------~~~t~f~Ikf~~~v~~re~~~~ 186 (188)
T 2j3w_B 162 VHW-------HKGTTLMIKFDESVIARDKALD 186 (188)
T ss_dssp EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence 999 3699999999999999999885
No 2
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-56 Score=383.41 Aligned_cols=178 Identities=40% Similarity=0.670 Sum_probs=149.5
Q ss_pred CCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 029348 10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK-------------- 75 (194)
Q Consensus 10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k-------------- 75 (194)
+.+||||||++.+.+||+|+|+|||+|||+|+++++++.+|++++|+.|||+||.||+|++.+|++
T Consensus 42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~ 121 (283)
T 3cue_B 42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS 121 (283)
T ss_dssp -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029348 76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK 108 (194)
Q Consensus 76 -----------------------------------------------~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~ 108 (194)
+++||.+++|+++||||++|+++||||+|+||+
T Consensus 122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek 201 (283)
T 3cue_B 122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK 201 (283)
T ss_dssp -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence 258999999999999999999999999999985
Q ss_pred ccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHHHH
Q 029348 109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLR 188 (194)
Q Consensus 109 ~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v~~ 188 (194)
.++++|+|+|+|+++++++|++++ +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus 202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~ 276 (283)
T 3cue_B 202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD 276 (283)
T ss_dssp CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence 555669999999999999999984 5899999999999999999999999999876543 33699999999999999
Q ss_pred Hhhh
Q 029348 189 REAR 192 (194)
Q Consensus 189 re~~ 192 (194)
||+.
T Consensus 277 Re~~ 280 (283)
T 3cue_B 277 REGL 280 (283)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9986
No 3
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=2.6e-54 Score=346.54 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=133.7
Q ss_pred hcHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029348 25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (194)
Q Consensus 25 Vs~s~f~~L~~EiV~y~~~~~~~-----~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lF 99 (194)
||.|+|+|||+|||+|++++.++ .++++++|++|||+||.||+|+++ | +.+||++++|+++||||++|+++|
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f 79 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF 79 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998774 456799999999999999999999 5 579999999999999999999999
Q ss_pred cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029348 100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT 177 (194)
Q Consensus 100 gk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~--~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~ 177 (194)
|||+|+| +|||+|+|+|+|++|+|++|||+|+++. .++|++|+||||||||+++||+|+||||++ +.|+|+
T Consensus 80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~ 152 (160)
T 2c0j_B 80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK 152 (160)
T ss_dssp SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence 9999999 6999999999999999999999999988 789999999999999999999999999997 678999
Q ss_pred EEEEech
Q 029348 178 ILIKFAE 184 (194)
Q Consensus 178 f~Ik~~~ 184 (194)
|+|||.+
T Consensus 153 f~i~~~~ 159 (160)
T 2c0j_B 153 FQVVIPK 159 (160)
T ss_dssp EEEECCC
T ss_pred EEEEeec
Confidence 9999976
No 4
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=1.5e-53 Score=352.54 Aligned_cols=163 Identities=20% Similarity=0.373 Sum_probs=151.2
Q ss_pred CcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 029348 21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG 100 (194)
Q Consensus 21 ~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFg 100 (194)
...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+ ..+||++++|+++||||++|+++||
T Consensus 19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg 97 (200)
T 1sz7_A 19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG 97 (200)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence 458899999999999999999999999999999999999999999999999987 5799999999999999999999999
Q ss_pred ccccccccccCCCCeEEE-EeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 029348 101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL 179 (194)
Q Consensus 101 k~~D~Le~~tn~~~~y~i-~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~ 179 (194)
||+|+|+ +||++|+|+| +|++|+.. |+++|++++.++|++|+||||||||+++||+ ||||+++++.+++++|+|+
T Consensus 98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~ 173 (200)
T 1sz7_A 98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR 173 (200)
T ss_dssp CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence 9999995 5999999999 79998766 9999999999999999999999999999999 8999999998888899999
Q ss_pred EEechHHHH
Q 029348 180 IKFAEEVLR 188 (194)
Q Consensus 180 Ik~~~~v~~ 188 (194)
|||.++|.+
T Consensus 174 Ikf~~~v~~ 182 (200)
T 1sz7_A 174 MRFIRRIED 182 (200)
T ss_dssp EEEEEEC--
T ss_pred EEEhhhhhh
Confidence 999998765
No 5
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=5.5e-53 Score=338.85 Aligned_cols=152 Identities=23% Similarity=0.387 Sum_probs=128.5
Q ss_pred chhcHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 029348 23 QEVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL 98 (194)
Q Consensus 23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~----e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~l 98 (194)
+-||.++|+|||+|||+|++++.++.+ +++++|++|||+||.||+|+++ | +.+||++++|+++||||++|+++
T Consensus 2 ~m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~ 78 (160)
T 2bjn_A 2 SMADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTV 78 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999987654 6899999999999999999999 4 47999999999999999999999
Q ss_pred hcccccccccccCCCCeEEEEeCCcccccccccCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348 99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (194)
Q Consensus 99 Fgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~--~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~ 176 (194)
||||+|+| +|||+|+|+|+|++|+|++|||+|+++. .++|++|+||||||||+++||+|+||||++ ++|.|
T Consensus 79 fgk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~ 151 (160)
T 2bjn_A 79 FKKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPAC 151 (160)
T ss_dssp HSSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCE
T ss_pred hCCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCce
Confidence 99999999 6999999999999999999999999884 789999999999999999999999999986 67999
Q ss_pred EEEEEech
Q 029348 177 TILIKFAE 184 (194)
Q Consensus 177 ~f~Ik~~~ 184 (194)
+|+|++.+
T Consensus 152 ~F~i~~~~ 159 (160)
T 2bjn_A 152 KFQVMIQK 159 (160)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecc
Confidence 99999986
No 6
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-52 Score=342.65 Aligned_cols=163 Identities=16% Similarity=0.327 Sum_probs=151.2
Q ss_pred CcchhcHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029348 21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (194)
Q Consensus 21 ~~~~Vs~s~f~~L~~EiV~-y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lF 99 (194)
...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||.+++++++||||++|+++|
T Consensus 21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf 99 (193)
T 3cue_D 21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL 99 (193)
T ss_dssp SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999 67766677899999999999999999999999997 589999999999999999999999
Q ss_pred cccccccccccCCCCeEEE-EeCCcccccccccCCCC-CCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029348 100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT 177 (194)
Q Consensus 100 gk~~D~Le~~tn~~~~y~i-~D~~~~~~~~vs~p~~~-~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~ 177 (194)
|||+|+|+ +|||+|+|+| +|++|+.. |+++|+++ ..++|++|+||||||||+++|| .||||+++++.+++++|+
T Consensus 100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~ 175 (193)
T 3cue_D 100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE 175 (193)
T ss_dssp SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence 99999995 5999999999 89998766 99999998 7899999999999999999999 788889999998888999
Q ss_pred EEEEechHHHH
Q 029348 178 ILIKFAEEVLR 188 (194)
Q Consensus 178 f~Ik~~~~v~~ 188 (194)
|+|||.++|.+
T Consensus 176 ~~Ikf~~~v~d 186 (193)
T 3cue_D 176 IKVKLNRILKD 186 (193)
T ss_dssp EEEECCCCCSC
T ss_pred EEEEEhhhhhc
Confidence 99999998754
No 7
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=96.35 E-value=0.0041 Score=48.97 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=78.0
Q ss_pred cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 029348 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG 100 (194)
Q Consensus 22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~-lFg 100 (194)
...|+.+.|.+|+..+-..+.....+.. |.+.||..|..+.+.+. +.+ +++|+. =+|
T Consensus 25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G 82 (163)
T 2oso_A 25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFG 82 (163)
T ss_dssp SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCC
T ss_pred cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCce
Confidence 3789999999999988766544332222 99999999998865422 222 456654 222
Q ss_pred cccccccccc---CCCCeEEEE-eCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348 101 KVADSLEKGT---EHEDEYMIS-EKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (194)
Q Consensus 101 k~~D~Le~~t---n~~~~y~i~-D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~ 176 (194)
. .+.. .. ..++.+.|. .+++. -. . ..+-.-..|.+|++.|+|+.+ +.-.|.+.=+.....+++.|
T Consensus 83 ~-l~i~--~~~~~~~~~~~~i~v~~s~e-~~---~---~~~~pvC~~~~G~~aG~~s~~-~g~~~~~~E~~C~a~G~~~C 151 (163)
T 2oso_A 83 D-LEID--ENKILLKNPPYKIKLSNPPY-QW---V---SKEEPIHDFIAGILAGCLEEI-FYYYFVVNEVECVSQGKDKC 151 (163)
T ss_dssp E-EECC--HHHHHHSCSCEEEEEESCSC-TT---C---CCSSCCCHHHHHHHHHHHHHH-HCSEEEEEEEECGGGTCSSE
T ss_pred E-EEEE--eccccccCCcEEEEEEeCce-ee---c---CCCCceeHHHHHHHHHHHHHH-hCCCeEEEEeEeEcCCCCeE
Confidence 2 1111 11 233556555 33332 11 1 122356788899999998886 22344444555566688999
Q ss_pred EEEEEechH
Q 029348 177 TILIKFAEE 185 (194)
Q Consensus 177 ~f~Ik~~~~ 185 (194)
.|.++..+.
T Consensus 152 ~F~~~~~~~ 160 (163)
T 2oso_A 152 VFEVKEVDE 160 (163)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEHHH
Confidence 999998653
No 8
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=84.47 E-value=1.4 Score=34.80 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029348 140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV 186 (194)
Q Consensus 140 ~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v 186 (194)
+..|+.|+|+|+-+..|-+.+|+ ..+....+.+.|+|.|++.++-
T Consensus 141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~ 185 (189)
T 3tfg_A 141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN 185 (189)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence 67899999999999866555554 5554444556899999998653
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=83.90 E-value=4.9 Score=31.43 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348 140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (194)
Q Consensus 140 ~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (194)
...|+.|+|+|+-+.+|-+.+|+-. +...++...+.|.|+++.
T Consensus 138 l~~~~~Gli~~~A~~f~~~v~i~~~--~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 138 LCFCAEGLLFGAAQHFQQKIQISHD--TCMHTGADHCMLIIELQN 180 (181)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEE--ECGGGTCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEE--eeccCCCCEEEEEEEecC
Confidence 6789999999999999888888732 222224568999999864
No 10
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=61.37 E-value=6.5 Score=31.02 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=33.3
Q ss_pred chhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029348 139 NCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~ 185 (194)
.+..|+.|+|+||-+-.|-+.+|+-.-..+... ....+|.|+|+..
T Consensus 136 gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~-~~~~~~rl~f~~~ 181 (188)
T 3sj5_A 136 KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDG-FSRLKVRIKFKNP 181 (188)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETT-EEEEEEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCC-ceEEEEEEEeeCh
Confidence 367899999999999999999887333222221 1267899999865
No 11
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=48.73 E-value=9.8 Score=27.34 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.2
Q ss_pred chhhhhHHHHHHHhhhCCCC
Q 029348 139 NCGAFVAGIVRGVLDSAGFP 158 (194)
Q Consensus 139 ~~~~f~~GiIrGaL~~lg~~ 158 (194)
+|...-||++||+|...|+.
T Consensus 16 ~~dwv~Cgiv~t~L~~~gl~ 35 (99)
T 2vqg_A 16 QYNWVACGILEGGLKAAGVL 35 (99)
T ss_dssp GGSHHHHHHHHHHHHHTTCC
T ss_pred ccCcccccHHHHHHHHhhcC
Confidence 46778899999999999874
No 12
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=33.58 E-value=59 Score=24.49 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=34.5
Q ss_pred cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029348 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (194)
Q Consensus 22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~ 72 (194)
+..||.+--+.+-..|+.|+-.+.. .+.++.++|||++|.--.-.+.+
T Consensus 3 k~~Vsken~aamki~m~~fLD~~~~---kfkkr~~~m~~~l~p~~~~~l~y 50 (141)
T 1gak_A 3 DVVVSRQEQSYVQRGMVNFLDEEMH---KLVKRFRDMRWNLGPGFVFLLKK 50 (141)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cceeehhhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCchHHHHHHH
Confidence 3456777777788888888765442 57899999999998766554443
No 13
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=33.12 E-value=58 Score=22.05 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 029348 32 FLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73 (194)
Q Consensus 32 ~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r 73 (194)
-||-+.|++...........-++=-++||+=..||+|.+-..
T Consensus 10 ~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 10 PLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA 51 (73)
T ss_dssp TTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence 478888888777654434555666689999999999998753
No 14
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=31.43 E-value=70 Score=24.83 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=60.9
Q ss_pred HhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCC
Q 029348 57 DAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG 136 (194)
Q Consensus 57 ~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~ 136 (194)
.+=|..|.+|+..+. ..+.-|++.|..+--|=.+ ..+ +.....-+|-| ..|++..++...
T Consensus 50 ~ILYWAGK~LARk~p--------l~s~edli~FF~~agwG~L-----~i~-kek~~~~~~eL--sG~~v~~Rl~~~---- 109 (158)
T 3njc_A 50 SMMYWAGKHLARKFP--------LESWEEFPAFFEEAGWGTL-----TNV-SAKKQELEFEL--EGPIISNRLKHQ---- 109 (158)
T ss_dssp HHHHHHHHHHHHHSC--------CSSGGGHHHHHHHTTSCEE-----EEE-EEETTEEEEEE--ECHHHHHHHHHS----
T ss_pred ceeeeccHHHHHhCC--------CCCHHHHHHHHHHhCCcEE-----EEe-ecccceEEEEe--cCchHHhHhhcC----
Confidence 356788888886654 4556678888877766544 222 12222233544 333433333221
Q ss_pred CcchhhhhHHHHHHHhhh-CCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348 137 TFNCGAFVAGIVRGVLDS-AGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (194)
Q Consensus 137 ~l~~~~f~~GiIrGaL~~-lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (194)
.-.+..+=||.|.+.++. +|..|+...+..+ ....+.|.|+++.
T Consensus 110 ~~~~F~LEAGFIAe~iq~q~~~~aEa~~~~~~----k~~~V~i~V~~D~ 154 (158)
T 3njc_A 110 KEPCFQLEAGFIAEQIQLMNDQIAESYEQVKK----RADKVVLTVKWDM 154 (158)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTEEEEEEEEEE----CSSCEEEEEEEEE
T ss_pred CCCcEEEehHHHHHHHHHHhCcceEEEEeecc----cCCeEEEEEEecC
Confidence 123556778888888875 5777776554332 2348999998863
No 15
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=24.77 E-value=1.5e+02 Score=19.33 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHH--HHHHHHH
Q 029348 50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV--HSTVWKV 97 (194)
Q Consensus 50 e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI--~k~~W~~ 97 (194)
++-..-++-|-+|-.-++|.+. ..+.....++|.+| .+.+||-
T Consensus 11 ~vLDlYe~SnIrIP~DIIEdl~-----~~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 11 AVLDLYEQSNIRIPSDIIEDLV-----NQRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHH-----TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCcHHHHHHHH-----HHhhhhHHHHHHHHHhhHhHHhh
Confidence 3445567789999999999999 45677788899998 4678874
No 16
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=24.76 E-value=32 Score=23.85 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhhhhh
Q 029348 48 IAELERRLEDAGYAV 62 (194)
Q Consensus 48 ~~e~~~~Le~mGy~V 62 (194)
..-+-++||.+||+|
T Consensus 52 Pr~VLnKLE~~G~rV 66 (83)
T 1jg5_A 52 PRIVLDKLECRGFRV 66 (83)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred hHHHHHHHhccCeEE
Confidence 456889999999986
Done!