Query 029351
Match_columns 194
No_of_seqs 123 out of 1120
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 8E-59 1.7E-63 393.3 16.0 186 1-191 2-189 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 1.3E-58 2.8E-63 392.4 15.7 186 1-191 1-189 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 4.3E-57 9.2E-62 388.8 16.4 184 5-191 3-186 (289)
4 cd00691 ascorbate_peroxidase A 100.0 6.5E-54 1.4E-58 364.5 15.8 173 9-191 13-188 (253)
5 PLN03030 cationic peroxidase; 100.0 1.9E-53 4.2E-58 370.8 11.4 161 2-177 31-201 (324)
6 cd00693 secretory_peroxidase H 100.0 4.2E-53 9.1E-58 366.9 12.3 163 2-179 8-183 (298)
7 PF00141 peroxidase: Peroxidas 100.0 2.9E-51 6.4E-56 344.2 7.0 165 12-191 1-196 (230)
8 cd08201 plant_peroxidase_like_ 100.0 1.1E-47 2.4E-52 325.6 9.1 158 28-191 37-205 (264)
9 cd00314 plant_peroxidase_like 100.0 1E-46 2.3E-51 320.2 14.1 173 12-191 3-188 (255)
10 cd00692 ligninase Ligninase an 100.0 2.5E-46 5.4E-51 327.1 14.7 169 20-191 21-201 (328)
11 cd00649 catalase_peroxidase_1 100.0 1.6E-46 3.5E-51 333.8 11.2 178 13-191 41-303 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 7.8E-44 1.7E-48 334.2 11.1 177 14-191 52-312 (716)
13 PRK15061 catalase/hydroperoxid 100.0 2.7E-42 5.9E-47 322.6 11.1 178 13-191 53-316 (726)
14 cd08200 catalase_peroxidase_2 100.0 5.3E-40 1.2E-44 281.9 13.9 170 14-191 14-216 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.2E-35 4.7E-40 277.4 14.5 172 12-191 430-629 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2E-34 4.3E-39 269.9 14.5 170 14-191 439-641 (726)
17 COG0376 KatG Catalase (peroxid 100.0 4.6E-31 1E-35 238.8 9.2 178 13-191 66-328 (730)
18 COG0376 KatG Catalase (peroxid 99.6 8.9E-16 1.9E-20 140.0 6.9 172 12-190 447-644 (730)
19 PF09533 DUF2380: Predicted li 46.6 11 0.00023 30.9 1.2 46 139-188 108-153 (188)
20 PRK13859 type IV secretion sys 28.7 42 0.0009 22.0 1.6 30 96-125 9-41 (55)
21 PTZ00411 transaldolase-like pr 28.5 34 0.00073 30.6 1.6 57 108-165 180-252 (333)
22 cd00957 Transaldolase_TalAB Tr 28.4 53 0.0012 29.1 2.8 55 108-163 168-238 (313)
23 PRK12346 transaldolase A; Prov 28.1 38 0.00082 30.1 1.8 58 107-165 168-241 (316)
24 PRK12309 transaldolase/EF-hand 25.8 65 0.0014 29.4 2.9 57 108-165 174-246 (391)
25 TIGR01911 HesB_rel_seleno HesB 25.0 17 0.00037 26.1 -0.8 32 17-58 8-39 (92)
26 cd02642 R3H_encore_like R3H do 24.2 76 0.0016 21.0 2.3 34 14-47 3-43 (63)
27 PRK05269 transaldolase B; Prov 23.4 43 0.00094 29.7 1.3 57 108-165 170-242 (318)
28 TIGR00874 talAB transaldolase. 21.8 62 0.0013 28.8 1.9 58 107-165 167-240 (317)
29 cd00439 Transaldolase Transald 21.3 36 0.00077 29.1 0.3 85 77-164 128-230 (252)
30 PF10937 DUF2638: Protein of u 20.6 1.1E+02 0.0023 23.1 2.7 30 130-160 79-108 (112)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=8e-59 Score=393.28 Aligned_cols=186 Identities=69% Similarity=1.165 Sum_probs=179.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCccccHHHhhccccCchhHHHHh
Q 029351 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (194)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (194)
|.+.||.+.+.++++|+++|++|.++++++.++|.+|||+||||++||...+.|||||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHhHHhhCCCCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhh
Q 029351 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (194)
Q Consensus 81 i~~iK~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (194)
|++||+++++|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.| .++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cchhhhhcccc--CCCCCCCCCCCCCCCcccCC
Q 029351 161 GGHTLVSATRR--GLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 161 GaHtiG~~~c~--~f~~~~~g~~~~~p~~fdn~ 191 (194)
||||||++||. +|. |+|+.+|.+|||+
T Consensus 161 GaHTiG~ah~~r~g~~----g~~d~tp~~FDN~ 189 (251)
T PLN02879 161 GGHTLGRCHKERSGFE----GAWTPNPLIFDNS 189 (251)
T ss_pred ccccccccccccccCC----CCCCCCccceeHH
Confidence 99999999995 444 7899999999995
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.3e-58 Score=392.36 Aligned_cols=186 Identities=73% Similarity=1.198 Sum_probs=179.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCccccHHHhhccccCchhHHHHh
Q 029351 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (194)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (194)
|.+.||.+.+.++++|++++++|++++.++.++|.||||+||||++||.....|||||||++.+|+++++|.||.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhCCCCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHh-cCCChhhHHHh
Q 029351 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (194)
Q Consensus 81 i~~iK~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~e~VaL 159 (194)
|++||+++++|||||||+||+++||+++|||.|+|++||+|+.++.+++.||.|+.+++++++.| +. +||+++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998889999999999999999 75 69999999999
Q ss_pred hcchhhhhcccc--CCCCCCCCCCCCCCCcccCC
Q 029351 160 SGGHTLVSATRR--GLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 160 ~GaHtiG~~~c~--~f~~~~~g~~~~~p~~fdn~ 191 (194)
+||||||++||. +|. |+|+.+|.+|||+
T Consensus 160 sGaHTiG~~hc~r~~~~----g~~~~tp~~fDn~ 189 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFE----GAWTSNPLIFDNS 189 (250)
T ss_pred ecceeeccccCCCCCCC----CCCCCCCCccchH
Confidence 999999999993 444 8999999999995
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.3e-57 Score=388.78 Aligned_cols=184 Identities=61% Similarity=0.963 Sum_probs=175.6
Q ss_pred CCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCccccHHHhhccccCchhHHHHhHHhH
Q 029351 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (194)
Q Consensus 5 cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (194)
.|.++..|..+|+.+|++|+++++++.++|.+|||+||||++||.+.+.|||||||++.+|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhcchh
Q 029351 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (194)
Q Consensus 85 K~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHt 164 (194)
|+++|+|||||||+||+++||+++|||.|+|++||+|+.++.++++||.|+.+++++++.| +++||+++|||||+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCCCCcccCC
Q 029351 165 LVSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 165 iG~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
||++||... ...|||+.+|.+|||+
T Consensus 162 iG~ahc~r~--g~~g~~~~Tp~~FDN~ 186 (289)
T PLN02608 162 LGRAHPERS--GFDGPWTKEPLKFDNS 186 (289)
T ss_pred cccccccCC--CCCCCCCCCCCccChH
Confidence 999999732 1238999999999995
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=6.5e-54 Score=364.51 Aligned_cols=173 Identities=54% Similarity=0.913 Sum_probs=159.0
Q ss_pred hHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCccccHHHhhccccCchhHHHHhHHhHHhhC
Q 029351 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (194)
Q Consensus 9 ~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (194)
.++|+++|+++ +. ++.++|++|||+||||++||++.+.||+||++++.+|+++++|.+|.+++++|++||+++
T Consensus 13 ~~~V~~~v~~~------~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL------ID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH------HH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 34555555554 44 999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhcchhh
Q 029351 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (194)
Q Consensus 89 p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHti 165 (194)
|+|||||||+||+++||+.+|||.|+|++||+|+.++. ++++||.|+.++++++++| +++||+++|||||+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999885 6788999999999999999 9999999999999999999
Q ss_pred hhccccCCCCCCCCCCCCCCCcccCC
Q 029351 166 VSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 166 G~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
|++||..+ ...|+|+.+|.+|||+
T Consensus 165 G~a~c~~~--~~~g~~~~tp~~FDn~ 188 (253)
T cd00691 165 GRCHKERS--GYDGPWTKNPLKFDNS 188 (253)
T ss_pred ecccccCC--CCCCCCCCCCCcccHH
Confidence 99999653 2348999999999995
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.9e-53 Score=370.82 Aligned_cols=161 Identities=27% Similarity=0.380 Sum_probs=151.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCccccH---HHhhccccCchhHHH
Q 029351 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (194)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (194)
++|||++|+||+++|+++ +.+++.++|++|||+|||||+ +||||||++. .|++.++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999998 999999999999999999998 9999999984 79999999988 799
Q ss_pred HhHHhHHhhC----C-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCC--CCCCCCCCCCCChHHHHHHHHHhcCC
Q 029351 79 RLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGNDHLRQVFGAQMGL 151 (194)
Q Consensus 79 ~~i~~iK~~~----p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s--~~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (194)
++|+.||+++ | +|||||||++|+|+||.++|||.|+|++||+|+.++ ....+||.|+.+++++++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 9999999875 7 799999999999999999999999999999999887 33458999999999999999 99999
Q ss_pred ChhhHHHhhcchhhhhccccCCCCCC
Q 029351 152 SDKDIVALSGGHTLVSATRRGLDLRD 177 (194)
Q Consensus 152 ~~~e~VaL~GaHtiG~~~c~~f~~~~ 177 (194)
+.+|||+|+||||||++||+.|..|+
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rl 201 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRL 201 (324)
T ss_pred CHHHheeeeeccccceeeeecccccc
Confidence 99999999999999999999998764
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.2e-53 Score=366.95 Aligned_cols=163 Identities=28% Similarity=0.382 Sum_probs=151.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCcccc------HHHhhccccCchh
Q 029351 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (194)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (194)
.++||++|++|+++|+++ +.+++.++|++|||+||||++ +||||||++ .+|+++++|.+|
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 689999999999999998 999999999999999999998 899999987 369999999998
Q ss_pred HHHHhHHhHHhhC----C-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHh
Q 029351 76 IAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQ 148 (194)
Q Consensus 76 ~~~~~i~~iK~~~----p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~ 148 (194)
++|++|++||+++ | +|||||||+||+++||+++|||.|+|++||+|+..+. +.+.||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 7999999999875 6 8999999999999999999999999999999998763 3368999999999999999 99
Q ss_pred cCCChhhHHHhhcchhhhhccccCCCCCCCC
Q 029351 149 MGLSDKDIVALSGGHTLVSATRRGLDLRDHG 179 (194)
Q Consensus 149 ~Gl~~~e~VaL~GaHtiG~~~c~~f~~~~~g 179 (194)
+||+++|||||+||||||++||..|..|+.+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~ 183 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYN 183 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccC
Confidence 9999999999999999999999999887643
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.9e-51 Score=344.18 Aligned_cols=165 Identities=35% Similarity=0.538 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCcccc-HHHhhccccCchhHHHHhHHhHHhhC--
Q 029351 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF-- 88 (194)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~iK~~~-- 88 (194)
||++|+++ +..++.++|+||||+||||++| |||||||++ .+|+++++|.||.+++++|++||+++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56777776 7789999999999999999988 999999976 78999999999988999999999986
Q ss_pred --C-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhhcch
Q 029351 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (194)
Q Consensus 89 --p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (194)
| +|||||||++|+++||+.+|||.|+|++||+|+..+.+.+ .||.|..+++++++.| +++||+++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 4 6999999999999999999999999999999999996544 5999999999999999 99999999999999999
Q ss_pred hhhhccccCCCCCCC-----------------------CCCCCCCCcccCC
Q 029351 164 TLVSATRRGLDLRDH-----------------------GPATLSFLTIPTS 191 (194)
Q Consensus 164 tiG~~~c~~f~~~~~-----------------------g~~~~~p~~fdn~ 191 (194)
|||.+||..|. |.+ -+++ +|.+|||+
T Consensus 148 TiG~~~c~~f~-rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~ 196 (230)
T PF00141_consen 148 TIGRAHCSSFS-RLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNS 196 (230)
T ss_dssp GSTEESGGCTG-GTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSH
T ss_pred ccccceecccc-ccccccccccccccceeccCCCcccccccc-CCCcchhH
Confidence 99999999988 654 1345 89999995
No 8
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.1e-47 Score=325.56 Aligned_cols=158 Identities=27% Similarity=0.396 Sum_probs=141.0
Q ss_pred hcCCchHHHHHHHhhhcccccccCCCCCCCCccccHHHhhccccCchh--HHHHhHHhHHhhCCCCcHHHHHHhhhhhhh
Q 029351 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (194)
Q Consensus 28 ~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~iK~~~p~VS~ADiialAa~~av 105 (194)
.++..++.||||+||||++||...+.|||||||++ |..++||.|+. ..+..++.|+. +.|||||||+||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999 67789998876 34566666543 47999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhc-chhhhhccccCCC------CC--
Q 029351 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLVSATRRGLD------LR-- 176 (194)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~G-aHtiG~~~c~~f~------~~-- 176 (194)
+.+|||.|+|++||+|+..+.+++ ||.|+.+++++++.| +++||+++|||+|+| |||||++||..|. ..
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~ 190 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPD 190 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccC
Confidence 999999999999999999998887 999999999999999 999999999999995 9999999999983 22
Q ss_pred CCCCCCCCCCcccCC
Q 029351 177 DHGPATLSFLTIPTS 191 (194)
Q Consensus 177 ~~g~~~~~p~~fdn~ 191 (194)
...||+++|.+|||+
T Consensus 191 ~~~p~dstp~~FDn~ 205 (264)
T cd08201 191 TVLQFFDTTIQFDNK 205 (264)
T ss_pred CCCCCCCCccccchH
Confidence 234999999999995
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1e-46 Score=320.17 Aligned_cols=173 Identities=42% Similarity=0.614 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccC-CCCCCCCccccHHHhhccccCchhHHHHhHHhHHhhCC-
Q 029351 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP- 89 (194)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~p- 89 (194)
|+..|++. +.+++.+++++|||+||||++|+.+. ..|||||||++.+|+++++|.+|.+++++|++||++++
T Consensus 3 v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~ 76 (255)
T cd00314 3 IKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDG 76 (255)
T ss_pred HHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCC
Confidence 55555555 55688999999999999999999887 78999999999999999999999899999999999995
Q ss_pred --CCcHHHHHHhhhhhhhhcc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhh
Q 029351 90 --TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (194)
Q Consensus 90 --~VS~ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (194)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+.+|.+..+++++++.| .++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVALS 155 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhhc
Confidence 7999999999999999999 999999999999998 5667888999999999999999 89999999999999
Q ss_pred -cchhh-hhccccCCCCCCCCCCCCCCCcccCC
Q 029351 161 -GGHTL-VSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 161 -GaHti-G~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
|+||+ |++||..|..+..++|+.+|.+|||+
T Consensus 156 ~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~ 188 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNA 188 (255)
T ss_pred cCCeeccCcccCCCCCcccCCCCCCCCCccchH
Confidence 99999 99999999877668999999999994
No 10
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-46 Score=327.15 Aligned_cols=169 Identities=30% Similarity=0.462 Sum_probs=147.5
Q ss_pred HHHHhh-HhhcCCc---hHHHHHHHhhhcccccc-----cCCCCCCCCccccH--HHhhccccCchhHHHHhHHhHHhhC
Q 029351 20 KRKLRG-FIAEKNC---APLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (194)
Q Consensus 20 ~~~i~~-~~~~~~~---a~~~lRL~FHDc~~~d~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (194)
+++|++ +..++.| ++.+|||+||||++|+. ..+.|||||||++. .|+++++|.||+.+++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 444554 4446555 55699999999999994 56789999999874 5999999999998899999998888
Q ss_pred CCCcHHHHHHhhhhhhhhc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhcchhhhh
Q 029351 89 PTISYADLYQLAGVVGVEV-TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVS 167 (194)
Q Consensus 89 p~VS~ADiialAa~~av~~-~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~ 167 (194)
+ |||||||+||+++||+. .|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+.+|||||+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 6 99999999999999995 69999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccCC
Q 029351 168 ATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 168 ~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
+|... ....+.||+.||.+|||+
T Consensus 179 a~~~D-ps~~g~p~D~TP~~FDn~ 201 (328)
T cd00692 179 QDFVD-PSIAGTPFDSTPGVFDTQ 201 (328)
T ss_pred cCCCC-CCCCCCCCCCCcchhcHH
Confidence 99432 122345999999999995
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.6e-46 Score=333.83 Aligned_cols=178 Identities=37% Similarity=0.558 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcccccccCCCCCCC-CccccHHHhhccccCchhHHHHhHH
Q 029351 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (194)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~~lRL~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~ 82 (194)
.-.++++|++|++++++. .++|.+|||+|||++|||.++++||+| |+|+|.+|.+++.|.||++++.+|+
T Consensus 41 ~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~ 120 (409)
T cd00649 41 KLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLW 120 (409)
T ss_pred hccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHH
Confidence 344678899999998864 799999999999999999999999998 7999999999999999999999999
Q ss_pred hHHhhCC-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCC-----------------------------------
Q 029351 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP----------------------------------- 126 (194)
Q Consensus 83 ~iK~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~----------------------------------- 126 (194)
+||++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 121 pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgli 200 (409)
T cd00649 121 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLI 200 (409)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccc
Confidence 9999997 7999999999999999999999999999999996531
Q ss_pred ---CCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHh-hcchhhhhccccCCCC-------------------------
Q 029351 127 ---QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSATRRGLDL------------------------- 175 (194)
Q Consensus 127 ---~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL-~GaHtiG~~~c~~f~~------------------------- 175 (194)
|++ .||+|..++.+|++.| .+|||+.+||||| +||||||++||..|..
T Consensus 201 yv~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g 279 (409)
T cd00649 201 YVNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTG 279 (409)
T ss_pred ccCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCC
Confidence 344 6999999999999999 9999999999999 5999999999976521
Q ss_pred --------CCCCCCCCCCCcccCC
Q 029351 176 --------RDHGPATLSFLTIPTS 191 (194)
Q Consensus 176 --------~~~g~~~~~p~~fdn~ 191 (194)
...|+|+.+|++|||+
T Consensus 280 ~g~~t~~sglDG~Wt~tP~~FDN~ 303 (409)
T cd00649 280 KGKDTITSGLEGAWTPTPTKWDNN 303 (409)
T ss_pred CCCCCccccCCCCCCCCcchhhHH
Confidence 3568999999999995
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=7.8e-44 Score=334.22 Aligned_cols=177 Identities=34% Similarity=0.505 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcccccccCCCCCCC-CccccHHHhhccccCchhHHHHhHHh
Q 029351 14 KAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEP 83 (194)
Q Consensus 14 ~~v~~~~~~i~~~~~~~---------~~a~~~lRL~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ 83 (194)
-.++.+|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|||.+|.+|+.|.+|++++++|++
T Consensus 52 ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~p 131 (716)
T TIGR00198 52 LDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWP 131 (716)
T ss_pred ccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHH
Confidence 34566899999999874 699999999999999999999999996 79999999999999999999999999
Q ss_pred HHhhCC-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCC------------------------------------
Q 029351 84 FKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------ 126 (194)
Q Consensus 84 iK~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~------------------------------------ 126 (194)
||++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 132 Ik~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyv 211 (716)
T TIGR00198 132 IKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYV 211 (716)
T ss_pred HHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhcccccc
Confidence 999998 7999999999999999999999999999999994321
Q ss_pred -CCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhh-cchhhhhccccCCCC---------------------------
Q 029351 127 -QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSATRRGLDL--------------------------- 175 (194)
Q Consensus 127 -~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~c~~f~~--------------------------- 175 (194)
+++ .+|+|..++.+|++.| .+|||+.+|||||+ ||||||++||.+|..
T Consensus 212 npeg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g 290 (716)
T TIGR00198 212 NPEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVG 290 (716)
T ss_pred CcccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCC
Confidence 222 6899999999999999 99999999999995 999999999987652
Q ss_pred ------CCCCCCCCCCCcccCC
Q 029351 176 ------RDHGPATLSFLTIPTS 191 (194)
Q Consensus 176 ------~~~g~~~~~p~~fdn~ 191 (194)
...|+||.+|++|||+
T Consensus 291 ~dt~~sglDG~wT~TP~~FDN~ 312 (716)
T TIGR00198 291 RDTMTSGLEVAWTTTPTQWDNG 312 (716)
T ss_pred CCcccccCCCCCCCCCCccchH
Confidence 2348999999999995
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.7e-42 Score=322.58 Aligned_cols=178 Identities=37% Similarity=0.555 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcccccccCCCCCCC-CccccHHHhhccccCchhHHHHhHH
Q 029351 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (194)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~~lRL~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~ 82 (194)
.-.++++|++|++++++. .++|.+|||+||+++|||.++++||++ |+|||.+|.+++.|.||++++++|+
T Consensus 53 ~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~ 132 (726)
T PRK15061 53 KLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLW 132 (726)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHH
Confidence 445677899999999874 799999999999999999999999997 7999999999999999999999999
Q ss_pred hHHhhCC-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCC----------------------------------
Q 029351 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------------- 127 (194)
Q Consensus 83 ~iK~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------------- 127 (194)
+||++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 133 pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgl 212 (726)
T PRK15061 133 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGL 212 (726)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccc
Confidence 9999997 79999999999999999999999999999999865321
Q ss_pred -----CC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhh-cchhhhhccccCCC-------------------------
Q 029351 128 -----EG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSATRRGLD------------------------- 174 (194)
Q Consensus 128 -----~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~c~~f~------------------------- 174 (194)
++ -+|+|..++.+++..| .+|||+.+|||||+ ||||||++||..|.
T Consensus 213 iyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~ 291 (726)
T PRK15061 213 IYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGS 291 (726)
T ss_pred eecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCC
Confidence 11 2799999999999999 99999999999995 99999999997662
Q ss_pred --------CCCCCCCCCCCCcccCC
Q 029351 175 --------LRDHGPATLSFLTIPTS 191 (194)
Q Consensus 175 --------~~~~g~~~~~p~~fdn~ 191 (194)
..+.|+|+.+|.+|||+
T Consensus 292 g~g~dt~tsGldG~Wt~tPt~fDN~ 316 (726)
T PRK15061 292 GKGADTITSGLEGAWTTTPTQWDNG 316 (726)
T ss_pred CCCCCCccccCCCCCCCCcchhhHH
Confidence 13669999999999995
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=5.3e-40 Score=281.95 Aligned_cols=170 Identities=27% Similarity=0.384 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCc-cccHHHhhccccCc--hhHHHHhHHhHHhhCC-
Q 029351 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (194)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~iK~~~p- 89 (194)
+.|+..|++ ++..+.+++.+|||+||++.|||.++++||+||. |+|.+|++|+.|.+ |.+++.+|++||++||
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 445555554 5677789999999999999999999999999985 99999999999999 9999999999999997
Q ss_pred ------CCcHHHHHHhhhhhhhhccCC-----CCCCCCCCCCCCCCCC--CC---CCCCCCCC------------ChHHH
Q 029351 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPP--QE---GRLPDAKQ------------GNDHL 141 (194)
Q Consensus 90 ------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~s~--~~---~~lP~p~~------------~~~~l 141 (194)
.||+||+|+||+..|||.+|| |.|+|.+||.|++.+. ++ .++|.+.. ..+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 9999999999998763 22 24454322 33679
Q ss_pred HHHHHHhcCCChhhHHHhhcch-hhhhccccCCCCCCCCCCCCCCCcccCC
Q 029351 142 RQVFGAQMGLSDKDIVALSGGH-TLVSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
++.| .+|||+.+|||||+||| ++|+.|..++ +|+||.+|++|||+
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~~~s~----~G~wT~~p~~f~N~ 216 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANYGGSK----HGVFTDRPGVLTND 216 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCCCCC----CCCCcCCCCccccH
Confidence 9999 99999999999999998 6999885444 49999999999995
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.2e-35 Score=277.37 Aligned_cols=172 Identities=26% Similarity=0.400 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCc-cccHHHhhcccc--CchhHHHHhHHhHHhhC
Q 029351 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF 88 (194)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~iK~~~ 88 (194)
|++.|...|++ ++.++-+++.+|||+||++.|||.++++||+||. |+|.+|++++.| .||.+++.+|++||++|
T Consensus 430 v~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 35666555554 4567888999999999999999999999999985 999999999999 89999999999999999
Q ss_pred C--CCcHHHHHHhhhhhhhhcc---CCC--CCCCCCCCCCCCCC--CCCCCCC-----C----------CCCChHHHHHH
Q 029351 89 P--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEP--PQEGRLP-----D----------AKQGNDHLRQV 144 (194)
Q Consensus 89 p--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s--~~~~~lP-----~----------p~~~~~~l~~~ 144 (194)
| .||+||+|+||+..|||.+ ||| .++|.+||.|+... .+++..| + .......|++.
T Consensus 507 ~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 507 AKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 9 8999999999999999998 897 58999999999876 2333222 1 11234568899
Q ss_pred HHHhcCCChhhHHHhhcch-hhhhccccCCCCCCCCCCCCCCCcccCC
Q 029351 145 FGAQMGLSDKDIVALSGGH-TLVSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 145 F~~~~Gl~~~e~VaL~GaH-tiG~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
| .++||+.+|||||+||| ++|+.|...+ +|+||.+|++|||.
T Consensus 587 a-~~lglt~~EmvaL~Gg~r~lG~~~~~s~----~G~~T~~p~~f~Nd 629 (716)
T TIGR00198 587 A-QLLTLTAPEMTVLIGGMRVLGANHGGSK----HGVFTDRVGVLSND 629 (716)
T ss_pred H-HhCCCChHHHHheecchhhccccCCCCC----CCCCcCCCCccccH
Confidence 9 99999999999999995 9999996444 49999999999995
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-34 Score=269.89 Aligned_cols=170 Identities=28% Similarity=0.395 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCCc-cccHHHhhccccC--chhHHHHhHHhHHhhC--
Q 029351 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-- 88 (194)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~iK~~~-- 88 (194)
..|...|.+ ++..+-..+.+||++||++.|||.++++||+||. |||.+|++++.|. +|.+++.+|++||++|
T Consensus 439 ~di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 344444444 5677778999999999999999999999999985 9999999999999 9999999999999998
Q ss_pred -----CCCcHHHHHHhhhhhhhhcc---CC--CCCCCCCCCCCCCCCC--CC---CCCCCCC------------CChHHH
Q 029351 89 -----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QE---GRLPDAK------------QGNDHL 141 (194)
Q Consensus 89 -----p~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~--~~---~~lP~p~------------~~~~~l 141 (194)
|.||+||+|+||+..|||.+ || |.|+|.+||.|++... ++ .++|... .....|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 57 9999999999998762 22 2566533 123789
Q ss_pred HHHHHHhcCCChhhHHHhhcch-hhhhccccCCCCCCCCCCCCCCCcccCC
Q 029351 142 RQVFGAQMGLSDKDIVALSGGH-TLVSATRRGLDLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~c~~f~~~~~g~~~~~p~~fdn~ 191 (194)
++.| .++||+.+|||||+||| ++|+.|..++ +|+||.+|++|||.
T Consensus 596 ~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~~S~----~G~~T~~p~~fsNd 641 (726)
T PRK15061 596 VDKA-QLLTLTAPEMTVLVGGLRVLGANYGGSK----HGVFTDRPGVLTND 641 (726)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCCCCC----CCCCcCCCCccccH
Confidence 9999 99999999999999997 7899884444 49999999999994
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=238.76 Aligned_cols=178 Identities=35% Similarity=0.549 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcccccccCCCCCCC-CccccHHHhhccccCchhHHHHhHH
Q 029351 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (194)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~~lRL~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~ 82 (194)
+-.+...|++|.+++.+. ..+|.+|||+||-+++|+..++.||.. |..||.++.+||.|.+|++++.+|.
T Consensus 66 ~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 66 SLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred hccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhh
Confidence 344566788999888874 589999999999999999999999997 6999999999999999999999999
Q ss_pred hHHhhCC-CCcHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCC----------------------------------
Q 029351 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------------- 127 (194)
Q Consensus 83 ~iK~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------------- 127 (194)
+||++|+ .||+||+|+|++.+|++..|++.+.|..||.|-..+..
T Consensus 146 PIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLI 225 (730)
T COG0376 146 PIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLI 225 (730)
T ss_pred hHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeE
Confidence 9999998 89999999999999999999999999999999877632
Q ss_pred ----C--CCCCCCCCChHHHHHHHHHhcCCChhhHHHhh-cchhhhhccccC------------------------C---
Q 029351 128 ----E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSATRRG------------------------L--- 173 (194)
Q Consensus 128 ----~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~c~~------------------------f--- 173 (194)
+ +..|+|-.+..+++..| ++|+|+.+|+|||+ ||||+|.+|..+ |
T Consensus 226 YVNPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G 304 (730)
T COG0376 226 YVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSG 304 (730)
T ss_pred EeCCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCC
Confidence 2 23688888999999999 99999999999997 699999999433 1
Q ss_pred ------CCCCCCCCCCCCCcccCC
Q 029351 174 ------DLRDHGPATLSFLTIPTS 191 (194)
Q Consensus 174 ------~~~~~g~~~~~p~~fdn~ 191 (194)
...+.++||.+|++|||+
T Consensus 305 ~G~dtitsGlE~~Wt~tPT~w~n~ 328 (730)
T COG0376 305 KGPDTITSGLEGAWTTTPTQWSNE 328 (730)
T ss_pred cCcccccccccccCCCCcchhhhH
Confidence 113679999999999985
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.61 E-value=8.9e-16 Score=139.98 Aligned_cols=172 Identities=27% Similarity=0.399 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCC-ccccHHHhhccccC--chhHHHHhHHhHHhhC
Q 029351 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQF 88 (194)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~iK~~~ 88 (194)
+.+.|...|.+ ++.++-....++-.+|-.+.||..|++.||+|| .|++.|.++|+.|. -|.+++.+++.|++.+
T Consensus 447 ~d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~f 523 (730)
T COG0376 447 VDADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEF 523 (730)
T ss_pred chHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555555555 577777889999999999999999999999997 99999999999995 4778999999999999
Q ss_pred C-CCcHHHHHHhhhhhhhhcc---CC--CCCCCCCCCCCCCCCC--CCC--CC-C-----------CCCCC-hHHHHHHH
Q 029351 89 P-TISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QEG--RL-P-----------DAKQG-NDHLRQVF 145 (194)
Q Consensus 89 p-~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~--~~~--~l-P-----------~p~~~-~~~l~~~F 145 (194)
. .||.||+|+|++..+||.+ +| ..++|.+||.|+.+.- .+. .| | ....+ -.-|+++-
T Consensus 524 nkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 524 NKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred cCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 7 6999999999999999863 34 3578899999997751 110 00 1 11112 23467887
Q ss_pred HHhcCCChhhHHHhhcchhhhhccccCCCCCCCCCCCCCCCcccC
Q 029351 146 GAQMGLSDKDIVALSGGHTLVSATRRGLDLRDHGPATLSFLTIPT 190 (194)
Q Consensus 146 ~~~~Gl~~~e~VaL~GaHtiG~~~c~~f~~~~~g~~~~~p~~fdn 190 (194)
+-++|+..||++|+||. ++-..++....+|.||+.|+...|
T Consensus 604 -qlL~LtapemtVLiGGl---RvLg~n~g~s~~GVfT~~pg~Ltn 644 (730)
T COG0376 604 -QLLTLTAPEMTVLIGGL---RVLGANYGGSKHGVFTDRPGVLTN 644 (730)
T ss_pred -HHhccCCccceEEEcce---EeeccCCCCCccceeccCcccccc
Confidence 88999999999999987 344455677778999999987766
No 19
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=46.61 E-value=11 Score=30.93 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCChhhHHHhhcchhhhhccccCCCCCCCCCCCCCCCcc
Q 029351 139 DHLRQVFGAQMGLSDKDIVALSGGHTLVSATRRGLDLRDHGPATLSFLTI 188 (194)
Q Consensus 139 ~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~~~c~~f~~~~~g~~~~~p~~f 188 (194)
.++..+| .++|+++-|-+.++..|-==+.|..+ ..+|+|+.....|
T Consensus 108 ~~la~wF-~~~Gi~IHd~ti~Ip~~vH~rIH~G~---~~GG~WN~aWr~f 153 (188)
T PF09533_consen 108 EELAEWF-ERRGIDIHDYTIPIPRDVHRRIHGGG---GRGGAWNQAWREF 153 (188)
T ss_pred HHHHHHH-HHcCCChhheeEecCHHHHHHhhCCC---CCCCcchHHHHHH
Confidence 5789999 99999999999998876545555322 1368998776555
No 20
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=28.72 E-value=42 Score=21.95 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.0
Q ss_pred HHHhhhh---hhhhccCCCCCCCCCCCCCCCCC
Q 029351 96 LYQLAGV---VGVEVTGGPDIPFHPGRDDKAEP 125 (194)
Q Consensus 96 iialAa~---~av~~~GGP~~~v~~GR~D~~~s 125 (194)
+++||+. +-+..+.||.+++-.||=-.+.|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 4667764 45667899999999999655444
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=28.46 E-value=34 Score=30.61 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=36.4
Q ss_pred cCCCCCCCCCCCCCCCCCCC--CCCC-CCCC---CChHHHHHHHHHhcCC----------ChhhHHHhhcchhh
Q 029351 108 TGGPDIPFHPGRDDKAEPPQ--EGRL-PDAK---QGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (194)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~--~~~l-P~p~---~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (194)
+|...+..+.||.+-..-.+ .... +... ..+.++...| +..|+ +..|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 57778899999985543211 1111 1111 3567788888 77776 45788889999843
No 22
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=28.43 E-value=53 Score=29.08 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=35.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHHhcCCC----------hhhHHHhhcch
Q 029351 108 TGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGH 163 (194)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaH 163 (194)
+|...+..+.||.|-..-...+ ..+. .-..+.++...| +..|+. ..|+.+|.|+|
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KKFGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred cCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HHcCCCcEEEecccCCHHHHHHHhCCC
Confidence 4777888999998754221111 1111 124567788888 788864 56777788888
No 23
>PRK12346 transaldolase A; Provisional
Probab=28.13 E-value=38 Score=30.09 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CCCCC-CCC---CCChHHHHHHHHHhcCC----------ChhhHHHhhcchhh
Q 029351 107 VTGGPDIPFHPGRDDKAEPP--QEGRL-PDA---KQGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (194)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~s~--~~~~l-P~p---~~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (194)
.+|...+..+.||.|-..-. +...+ +.. -..+.++...| +..|+ +..|+.+|.|+|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 36778889999998764321 11111 111 24567788888 77775 45788889999843
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=25.81 E-value=65 Score=29.41 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=36.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CChHHHHHHHHHhcCC----------ChhhHHHhhcchhh
Q 029351 108 TGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (194)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~~~--~lP~p~----~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (194)
+|...+..+.||.|-..-...+ .+|... ..+.++...| +..|+ +..|+..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-KKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-HhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 5778889999998764322111 133222 3567788888 77765 35677888899843
No 25
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=24.96 E-value=17 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHhhHhhcCCchHHHHHHHhhhcccccccCCCCCCCC
Q 029351 17 EKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG 58 (194)
Q Consensus 17 ~~~~~~i~~~~~~~~~a~~~lRL~FHDc~~~d~s~~~gG~dg 58 (194)
++|.+.|++++++....+..||+.+ ..|||.|
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v----------~~gGCsG 39 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHF----------AGMGCMG 39 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEE----------eCCCccC
Confidence 3455556666655433334588765 3488988
No 26
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.19 E-value=76 Score=20.97 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhHhhcCC-------chHHHHHHHhhhcccc
Q 029351 14 KAVEKCKRKLRGFIAEKN-------CAPLMLRIAWHSAGTY 47 (194)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~-------~a~~~lRL~FHDc~~~ 47 (194)
.-|.+.+++|..|++++. -....-|++-|++.-|
T Consensus 3 ~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~ 43 (63)
T cd02642 3 LFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQY 43 (63)
T ss_pred hHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHH
Confidence 345566777888888761 2457889999999864
No 27
>PRK05269 transaldolase B; Provisional
Probab=23.38 E-value=43 Score=29.68 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=36.1
Q ss_pred cCCCCCCCCCCCCCCCCCCC---CCCC---CCCCCChHHHHHHHHHhcCCC----------hhhHHHhhcchhh
Q 029351 108 TGGPDIPFHPGRDDKAEPPQ---EGRL---PDAKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (194)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~---~~~l---P~p~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaHti 165 (194)
+|...+..+.||.|-..-.. ...- -+.-..+.++...| +..|+. ..|+..|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 57778899999987542211 0001 11224677888888 787764 4667778898854
No 28
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.78 E-value=62 Score=28.76 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=36.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC--CCC----CCCCChHHHHHHHHHhcCC----------ChhhHHHhhcchhh
Q 029351 107 VTGGPDIPFHPGRDDKAEPPQEG--RLP----DAKQGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (194)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~s~~~~--~lP----~p~~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (194)
.+|...+..+.||.+-..-...+ ..+ +.-..+.++...| +..|+ +..|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 35778889999998653221110 111 1224667788888 78776 35677888898843
No 29
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=21.28 E-value=36 Score=29.05 Aligned_cols=85 Identities=13% Similarity=-0.035 Sum_probs=42.8
Q ss_pred HHHhHHhHHhhCCCCcHHHHHHhhhhhhh--hccCCCCCCCCCCCCCCCCCCC-CCCCCCCC--C---ChHHHHHHHHHh
Q 029351 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQ-EGRLPDAK--Q---GNDHLRQVFGAQ 148 (194)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADiialAa~~av--~~~GGP~~~v~~GR~D~~~s~~-~~~lP~p~--~---~~~~l~~~F~~~ 148 (194)
++..++.++++ .|++-=...+....++ ..+|...+.++.||.|...-.. ...-+++. . .+.++...| +.
T Consensus 128 Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~~ 204 (252)
T cd00439 128 GIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-KQ 204 (252)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-HH
Confidence 55555555543 2222222233333222 2356677889999998755411 00111111 2 344666777 66
Q ss_pred cCCC----------hhhHHHhhcchh
Q 029351 149 MGLS----------DKDIVALSGGHT 164 (194)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHt 164 (194)
.|.. ..++..|.|.|+
T Consensus 205 ~~~~tkiL~AS~r~~~~v~~l~G~d~ 230 (252)
T cd00439 205 KFKKQRVLWASFSDTLYVAPLIGCDT 230 (252)
T ss_pred hCCCCeEEEEeeCCHHHHHHhhCCCe
Confidence 6653 455566667764
No 30
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=20.60 E-value=1.1e+02 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhcCCChhhHHHhh
Q 029351 130 RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (194)
Q Consensus 130 ~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (194)
.++....+..+|=..| .++.++.+||-++.
T Consensus 79 ~~~g~~~~~~eLP~Rf-rr~p~se~EiE~In 108 (112)
T PF10937_consen 79 PLKGEYFDRSELPARF-RRKPISEEEIEAIN 108 (112)
T ss_pred CCCcceeeHHHcCHhH-ccCCCCHHHHHHHH
Confidence 3455567888999999 89999999999885
Done!