Query 029352
Match_columns 194
No_of_seqs 129 out of 1202
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 2.6E-39 5.7E-44 236.3 19.6 186 1-192 10-208 (211)
2 KOG0868 Glutathione S-transfer 100.0 2.5E-38 5.3E-43 214.0 16.8 191 2-194 6-215 (217)
3 TIGR01262 maiA maleylacetoacet 100.0 2.9E-37 6.2E-42 225.5 21.5 189 3-192 1-210 (210)
4 PRK13972 GSH-dependent disulfi 100.0 2.5E-36 5.5E-41 221.2 19.7 182 1-188 1-207 (215)
5 PRK15113 glutathione S-transfe 100.0 2.4E-36 5.2E-41 221.1 18.4 184 1-189 5-211 (214)
6 PLN02473 glutathione S-transfe 100.0 3.7E-36 8E-41 220.2 18.0 184 2-187 3-212 (214)
7 PRK10542 glutathionine S-trans 100.0 3.3E-35 7.3E-40 213.2 16.5 182 2-187 1-198 (201)
8 PLN02395 glutathione S-transfe 100.0 3.5E-34 7.5E-39 209.9 18.8 183 2-187 3-211 (215)
9 PTZ00057 glutathione s-transfe 100.0 5E-34 1.1E-38 207.5 18.6 185 1-189 4-202 (205)
10 COG0625 Gst Glutathione S-tran 100.0 1.4E-33 3.1E-38 206.1 19.8 176 2-181 1-199 (211)
11 PRK11752 putative S-transferas 100.0 1.8E-33 4E-38 211.4 20.1 183 1-188 44-260 (264)
12 PRK10357 putative glutathione 100.0 2.4E-33 5.2E-38 203.6 18.9 180 2-187 1-201 (202)
13 KOG0406 Glutathione S-transfer 100.0 2.5E-32 5.4E-37 195.8 19.0 182 2-187 10-212 (231)
14 PLN02378 glutathione S-transfe 100.0 2.1E-32 4.5E-37 200.0 18.1 176 7-187 17-200 (213)
15 TIGR00862 O-ClC intracellular 100.0 3E-31 6.5E-36 194.6 20.1 176 8-187 17-221 (236)
16 PLN02817 glutathione dehydroge 100.0 2E-30 4.3E-35 194.1 20.0 174 7-186 70-251 (265)
17 KOG1695 Glutathione S-transfer 100.0 5.9E-30 1.3E-34 182.5 17.5 183 2-190 4-204 (206)
18 KOG0867 Glutathione S-transfer 100.0 6.3E-30 1.4E-34 187.8 18.0 182 2-185 3-208 (226)
19 PRK10387 glutaredoxin 2; Provi 100.0 6.1E-29 1.3E-33 181.5 15.9 170 2-180 1-207 (210)
20 KOG4420 Uncharacterized conser 100.0 6.9E-28 1.5E-32 172.5 13.4 184 2-186 27-287 (325)
21 TIGR02182 GRXB Glutaredoxin, G 100.0 4.6E-27 1E-31 171.3 15.6 168 3-180 1-206 (209)
22 PLN02907 glutamate-tRNA ligase 99.9 1.5E-22 3.2E-27 168.7 17.6 152 2-179 3-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 4.4E-21 9.5E-26 133.9 13.9 176 9-187 20-206 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.8 9.8E-21 2.1E-25 115.0 8.3 73 2-74 1-73 (73)
25 cd03048 GST_N_Ure2p_like GST_N 99.8 1.6E-20 3.5E-25 116.6 9.1 77 1-78 1-80 (81)
26 cd03045 GST_N_Delta_Epsilon GS 99.8 2.9E-20 6.2E-25 113.5 8.4 74 2-75 1-74 (74)
27 cd03041 GST_N_2GST_N GST_N fam 99.8 2.8E-20 6.2E-25 114.3 7.8 75 1-77 1-77 (77)
28 cd03050 GST_N_Theta GST_N fami 99.8 9.4E-20 2E-24 111.8 8.9 76 2-77 1-76 (76)
29 cd03053 GST_N_Phi GST_N family 99.8 1.2E-19 2.5E-24 111.4 8.6 76 1-76 1-76 (76)
30 PF13417 GST_N_3: Glutathione 99.8 1E-19 2.2E-24 111.3 8.1 74 4-80 1-74 (75)
31 cd03056 GST_N_4 GST_N family, 99.8 2.1E-19 4.6E-24 109.3 8.2 73 2-74 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 2.6E-19 5.7E-24 108.9 8.2 73 2-74 1-73 (73)
33 cd03059 GST_N_SspA GST_N famil 99.8 4.1E-19 8.9E-24 108.1 8.6 73 2-77 1-73 (73)
34 PF02798 GST_N: Glutathione S- 99.8 5.4E-19 1.2E-23 108.2 8.3 74 2-75 1-76 (76)
35 cd03057 GST_N_Beta GST_N famil 99.8 7.3E-19 1.6E-23 108.1 8.6 76 2-78 1-77 (77)
36 cd03046 GST_N_GTT1_like GST_N 99.8 9.2E-19 2E-23 107.4 8.9 76 2-78 1-76 (76)
37 cd03042 GST_N_Zeta GST_N famil 99.8 6.8E-19 1.5E-23 107.1 8.2 73 2-74 1-73 (73)
38 cd03058 GST_N_Tau GST_N family 99.8 9E-19 1.9E-23 106.9 8.5 73 2-77 1-74 (74)
39 cd03044 GST_N_EF1Bgamma GST_N 99.8 8.1E-19 1.7E-23 107.3 7.9 72 3-75 2-74 (75)
40 cd03051 GST_N_GTT2_like GST_N 99.8 7E-19 1.5E-23 107.3 7.6 73 2-74 1-74 (74)
41 cd03076 GST_N_Pi GST_N family, 99.8 4.6E-19 1E-23 107.7 6.7 71 2-75 2-72 (73)
42 cd03061 GST_N_CLIC GST_N famil 99.8 2.5E-18 5.4E-23 107.4 8.5 69 8-79 20-88 (91)
43 cd03039 GST_N_Sigma_like GST_N 99.8 9.7E-19 2.1E-23 106.1 6.4 72 2-75 1-72 (72)
44 cd03075 GST_N_Mu GST_N family, 99.8 3.4E-18 7.4E-23 106.1 8.0 75 3-77 2-82 (82)
45 COG2999 GrxB Glutaredoxin 2 [P 99.8 1.4E-17 3E-22 113.4 10.4 171 2-181 1-208 (215)
46 cd03080 GST_N_Metaxin_like GST 99.7 7.5E-18 1.6E-22 103.0 8.0 68 1-78 1-75 (75)
47 cd03037 GST_N_GRX2 GST_N famil 99.7 5.2E-18 1.1E-22 102.6 7.2 70 2-75 1-71 (71)
48 cd03060 GST_N_Omega_like GST_N 99.7 7.6E-18 1.6E-22 101.9 7.8 68 3-73 2-70 (71)
49 cd03055 GST_N_Omega GST_N fami 99.7 7E-18 1.5E-22 106.5 7.8 71 1-74 18-89 (89)
50 KOG3029 Glutathione S-transfer 99.7 3.9E-17 8.4E-22 118.9 11.8 168 2-176 91-354 (370)
51 cd03049 GST_N_3 GST_N family, 99.7 1.3E-17 2.9E-22 101.4 7.3 70 2-74 1-73 (73)
52 cd03038 GST_N_etherase_LigE GS 99.7 2.2E-17 4.8E-22 103.1 7.7 70 8-78 14-84 (84)
53 cd03077 GST_N_Alpha GST_N fami 99.7 3.4E-17 7.3E-22 101.0 8.0 71 2-78 2-77 (79)
54 PF13409 GST_N_2: Glutathione 99.7 5.6E-17 1.2E-21 97.7 7.5 68 9-76 1-70 (70)
55 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.5E-16 3.3E-21 97.7 7.6 71 2-77 2-76 (77)
56 cd03043 GST_N_1 GST_N family, 99.7 3.5E-16 7.6E-21 95.0 7.9 67 7-74 7-73 (73)
57 cd00570 GST_N_family Glutathio 99.7 7.4E-16 1.6E-20 92.5 7.9 71 2-74 1-71 (71)
58 COG0435 ECM4 Predicted glutath 99.6 1.4E-15 3.1E-20 110.6 9.1 181 2-185 52-285 (324)
59 KOG4244 Failed axon connection 99.6 1.3E-14 2.9E-19 105.2 12.0 155 10-176 61-272 (281)
60 cd03054 GST_N_Metaxin GST_N fa 99.6 6.3E-15 1.4E-19 89.3 7.3 65 2-76 1-72 (72)
61 cd03196 GST_C_5 GST_C family, 99.6 2.6E-14 5.7E-19 94.4 10.0 76 107-184 38-115 (115)
62 cd03191 GST_C_Zeta GST_C famil 99.6 2.6E-14 5.6E-19 95.3 9.5 78 109-187 43-120 (121)
63 KOG2903 Predicted glutathione 99.6 1.7E-14 3.6E-19 104.2 8.7 181 2-185 38-287 (319)
64 cd03198 GST_C_CLIC GST_C famil 99.6 3.2E-14 6.8E-19 95.5 9.4 82 106-187 25-125 (134)
65 cd03210 GST_C_Pi GST_C family, 99.6 2.9E-14 6.2E-19 95.8 9.0 83 107-189 32-115 (126)
66 cd03208 GST_C_Alpha GST_C fami 99.6 3.7E-14 8E-19 96.6 9.5 80 111-190 40-119 (137)
67 cd03188 GST_C_Beta GST_C famil 99.6 2.2E-14 4.9E-19 94.5 8.2 75 107-184 40-114 (114)
68 cd03209 GST_C_Mu GST_C family, 99.5 5.5E-14 1.2E-18 93.8 9.4 82 106-190 31-113 (121)
69 PF00043 GST_C: Glutathione S- 99.5 6.8E-14 1.5E-18 89.2 8.8 70 106-178 24-95 (95)
70 KOG3027 Mitochondrial outer me 99.5 4.5E-13 9.7E-18 93.7 13.0 155 9-177 33-248 (257)
71 cd03207 GST_C_8 GST_C family, 99.5 8.6E-14 1.9E-18 90.2 8.6 75 108-186 28-102 (103)
72 cd03186 GST_C_SspA GST_N famil 99.5 1.3E-13 2.8E-18 89.9 9.2 76 105-183 30-106 (107)
73 cd03184 GST_C_Omega GST_C fami 99.5 6.5E-14 1.4E-18 93.8 7.8 83 105-188 27-115 (124)
74 cd03189 GST_C_GTT1_like GST_C 99.5 4.6E-13 1E-17 89.0 10.7 69 107-178 51-119 (119)
75 cd03187 GST_C_Phi GST_C family 99.5 1.1E-13 2.4E-18 91.7 7.6 76 106-184 41-118 (118)
76 cd03177 GST_C_Delta_Epsilon GS 99.5 6.7E-14 1.5E-18 92.9 6.4 80 106-187 34-113 (118)
77 cd03185 GST_C_Tau GST_C family 99.5 4.8E-13 1E-17 89.8 10.4 80 106-187 31-116 (126)
78 cd03178 GST_C_Ure2p_like GST_C 99.5 1.5E-13 3.3E-18 90.4 7.3 76 106-184 36-112 (113)
79 cd03204 GST_C_GDAP1 GST_C fami 99.5 3.6E-13 7.8E-18 87.7 8.5 74 106-180 25-111 (111)
80 cd03180 GST_C_2 GST_C family, 99.5 3.7E-13 8E-18 88.1 8.2 71 107-180 40-110 (110)
81 cd03201 GST_C_DHAR GST_C famil 99.5 6.4E-13 1.4E-17 88.5 9.3 78 109-187 29-111 (121)
82 cd03190 GST_C_ECM4_like GST_C 99.5 1.1E-12 2.4E-17 89.9 10.2 80 105-186 32-118 (142)
83 cd03200 GST_C_JTV1 GST_C famil 99.4 1.5E-12 3.3E-17 83.1 9.7 93 70-177 1-96 (96)
84 cd03206 GST_C_7 GST_C family, 99.4 6.1E-13 1.3E-17 85.7 7.8 71 107-180 30-100 (100)
85 cd03203 GST_C_Lambda GST_C fam 99.4 1.1E-12 2.4E-17 87.3 8.9 74 113-187 33-112 (120)
86 cd03183 GST_C_Theta GST_C fami 99.4 8.4E-13 1.8E-17 88.6 7.9 79 105-185 40-121 (126)
87 cd03182 GST_C_GTT2_like GST_C 99.4 1.3E-12 2.7E-17 86.6 8.2 72 106-180 45-117 (117)
88 cd03181 GST_C_EFB1gamma GST_C 99.4 1.5E-12 3.2E-17 87.0 8.4 80 106-188 36-118 (123)
89 PF13410 GST_C_2: Glutathione 99.4 2.1E-12 4.5E-17 77.4 8.2 65 106-173 2-69 (69)
90 cd03195 GST_C_4 GST_C family, 99.4 2.1E-12 4.5E-17 85.2 8.9 75 107-186 39-113 (114)
91 cd03194 GST_C_3 GST_C family, 99.4 2E-12 4.4E-17 85.2 8.8 74 108-185 39-113 (114)
92 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.7E-12 3.6E-17 78.0 7.0 60 8-76 15-74 (74)
93 PF14497 GST_C_3: Glutathione 99.3 5.7E-12 1.2E-16 81.0 7.3 68 106-176 31-99 (99)
94 cd03202 GST_C_etherase_LigE GS 99.3 2.3E-11 5E-16 81.4 8.0 68 108-177 56-124 (124)
95 cd03179 GST_C_1 GST_C family, 99.2 3E-11 6.4E-16 78.3 6.9 67 106-175 39-105 (105)
96 TIGR02190 GlrX-dom Glutaredoxi 99.2 8.3E-11 1.8E-15 72.3 6.8 71 1-74 9-79 (79)
97 cd03193 GST_C_Metaxin GST_C fa 99.2 1.2E-10 2.6E-15 73.1 7.2 64 109-175 18-88 (88)
98 cd00299 GST_C_family Glutathio 99.2 1.6E-10 3.4E-15 74.0 7.2 67 105-174 31-100 (100)
99 cd03192 GST_C_Sigma_like GST_C 99.1 1.6E-10 3.5E-15 74.8 6.8 68 106-174 35-104 (104)
100 PRK10638 glutaredoxin 3; Provi 99.1 2.7E-10 5.9E-15 70.7 6.5 70 2-73 4-73 (83)
101 KOG3028 Translocase of outer m 99.1 2E-08 4.4E-13 75.1 16.7 154 10-176 17-233 (313)
102 cd03029 GRX_hybridPRX5 Glutare 99.1 8.4E-10 1.8E-14 66.6 7.3 71 1-74 2-72 (72)
103 cd03078 GST_N_Metaxin1_like GS 99.1 7.5E-10 1.6E-14 66.8 6.9 57 10-76 16-72 (73)
104 cd03212 GST_C_Metaxin1_3 GST_C 99.0 2.8E-09 6E-14 72.5 6.9 67 107-176 61-134 (137)
105 cd03211 GST_C_Metaxin2 GST_C f 98.9 2.1E-09 4.5E-14 72.1 5.6 67 107-175 54-126 (126)
106 TIGR02196 GlrX_YruB Glutaredox 98.9 3.9E-09 8.4E-14 63.6 6.2 71 1-73 1-73 (74)
107 cd03197 GST_C_mPGES2 GST_C fam 98.9 3.5E-09 7.7E-14 71.9 6.5 65 110-176 79-145 (149)
108 cd03205 GST_C_6 GST_C family, 98.9 6.2E-09 1.3E-13 66.7 7.2 65 105-174 32-98 (98)
109 cd03027 GRX_DEP Glutaredoxin ( 98.9 7E-09 1.5E-13 62.7 6.1 68 2-71 3-70 (73)
110 PRK10329 glutaredoxin-like pro 98.7 2.9E-08 6.3E-13 61.1 5.7 62 1-65 2-63 (81)
111 cd02066 GRX_family Glutaredoxi 98.7 4.1E-08 8.9E-13 58.7 6.1 69 2-72 2-70 (72)
112 cd02976 NrdH NrdH-redoxin (Nrd 98.7 2.7E-08 5.9E-13 59.7 5.2 63 2-66 2-64 (73)
113 COG0695 GrxC Glutaredoxin and 98.7 6.2E-08 1.3E-12 59.5 6.1 72 1-72 2-73 (80)
114 PF14834 GST_C_4: Glutathione 98.7 3.4E-07 7.4E-12 58.8 9.4 74 107-185 40-113 (117)
115 cd03418 GRX_GRXb_1_3_like Glut 98.6 1.1E-07 2.4E-12 57.6 6.1 70 2-73 2-72 (75)
116 TIGR02200 GlrX_actino Glutared 98.6 1.8E-07 3.8E-12 56.9 5.7 70 2-73 2-75 (77)
117 TIGR02181 GRX_bact Glutaredoxi 98.6 2.3E-07 4.9E-12 56.9 6.0 71 2-74 1-71 (79)
118 TIGR02194 GlrX_NrdH Glutaredox 98.5 3.4E-07 7.4E-12 55.1 4.9 57 2-61 1-57 (72)
119 PRK11200 grxA glutaredoxin 1; 98.5 9.6E-07 2.1E-11 54.9 6.9 75 2-78 3-84 (85)
120 PF00462 Glutaredoxin: Glutare 98.4 2.9E-07 6.3E-12 53.3 3.8 60 2-63 1-60 (60)
121 TIGR02183 GRXA Glutaredoxin, G 98.4 1.7E-06 3.8E-11 53.9 6.9 74 2-77 2-82 (86)
122 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.7E-06 3.6E-11 53.3 6.4 74 2-75 2-76 (82)
123 TIGR02189 GlrX-like_plant Glut 98.4 1.6E-06 3.5E-11 55.5 6.2 71 2-72 10-81 (99)
124 PHA03050 glutaredoxin; Provisi 98.3 3.7E-06 8E-11 54.6 6.4 70 2-71 15-88 (108)
125 PF10568 Tom37: Outer mitochon 98.2 8.6E-06 1.9E-10 48.8 6.7 55 9-73 13-71 (72)
126 TIGR02180 GRX_euk Glutaredoxin 98.1 1.2E-05 2.6E-10 49.6 6.2 74 2-75 1-77 (84)
127 TIGR00365 monothiol glutaredox 98.0 2.6E-05 5.7E-10 49.7 6.4 63 8-72 25-87 (97)
128 cd03028 GRX_PICOT_like Glutare 97.9 4.6E-05 1E-09 47.8 6.4 63 8-72 21-83 (90)
129 PF04399 Glutaredoxin2_C: Glut 97.8 5.8E-05 1.3E-09 50.6 5.5 68 108-180 57-124 (132)
130 cd03031 GRX_GRX_like Glutaredo 97.8 9.4E-05 2E-09 50.7 5.9 69 2-72 2-80 (147)
131 cd03199 GST_C_GRX2 GST_C famil 97.7 0.0002 4.3E-09 47.6 6.7 68 108-180 58-125 (128)
132 PRK12759 bifunctional gluaredo 97.5 0.00045 9.8E-09 55.5 7.0 67 2-71 4-79 (410)
133 PRK01655 spxA transcriptional 97.4 0.00025 5.3E-09 47.8 3.7 33 1-33 1-33 (131)
134 cd03032 ArsC_Spx Arsenate Redu 97.4 0.00026 5.6E-09 46.6 3.7 33 1-33 1-33 (115)
135 cd02973 TRX_GRX_like Thioredox 97.3 0.00091 2E-08 39.2 5.6 58 1-64 2-64 (67)
136 PRK10824 glutaredoxin-4; Provi 97.2 0.0017 3.6E-08 42.6 6.2 63 8-72 28-90 (115)
137 PRK13344 spxA transcriptional 97.2 0.00052 1.1E-08 46.3 3.7 33 1-33 1-33 (132)
138 PRK12559 transcriptional regul 97.1 0.0007 1.5E-08 45.6 3.7 33 1-33 1-33 (131)
139 KOG1752 Glutaredoxin and relat 97.1 0.0033 7.1E-08 40.4 6.5 70 3-72 17-87 (104)
140 KOG1147 Glutamyl-tRNA syntheta 97.0 0.00028 6.1E-09 57.1 1.6 112 58-182 43-160 (712)
141 PRK10853 putative reductase; P 96.9 0.0013 2.8E-08 43.4 3.7 33 1-33 1-33 (118)
142 COG1393 ArsC Arsenate reductas 96.9 0.0013 2.7E-08 43.4 3.5 33 1-33 2-34 (117)
143 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0062 1.3E-07 38.3 6.0 68 2-71 2-79 (92)
144 cd03036 ArsC_like Arsenate Red 96.8 0.0014 3E-08 42.8 3.2 32 2-33 1-32 (111)
145 cd02977 ArsC_family Arsenate R 96.7 0.0021 4.5E-08 41.5 3.4 32 2-33 1-32 (105)
146 PTZ00062 glutaredoxin; Provisi 96.6 0.008 1.7E-07 43.6 6.3 63 8-72 126-188 (204)
147 TIGR01617 arsC_related transcr 96.3 0.0048 1E-07 40.7 3.4 32 2-33 1-32 (117)
148 PRK10026 arsenate reductase; P 96.3 0.0051 1.1E-07 41.8 3.3 33 1-33 3-35 (141)
149 COG4545 Glutaredoxin-related p 96.3 0.017 3.7E-07 34.3 5.0 64 1-64 3-77 (85)
150 cd03035 ArsC_Yffb Arsenate Red 96.2 0.007 1.5E-07 39.1 3.4 32 2-33 1-32 (105)
151 cd03033 ArsC_15kD Arsenate Red 96.1 0.0077 1.7E-07 39.4 3.4 32 2-33 2-33 (113)
152 TIGR01616 nitro_assoc nitrogen 95.5 0.021 4.5E-07 38.1 3.5 32 2-33 3-34 (126)
153 TIGR00412 redox_disulf_2 small 95.4 0.13 2.7E-06 31.0 6.6 55 2-64 3-61 (76)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 95.2 0.098 2.1E-06 32.6 5.7 57 2-64 16-77 (89)
155 TIGR00014 arsC arsenate reduct 95.1 0.031 6.7E-07 36.7 3.4 32 2-33 1-32 (114)
156 cd03034 ArsC_ArsC Arsenate Red 95.0 0.033 7.1E-07 36.4 3.4 32 2-33 1-32 (112)
157 PHA02125 thioredoxin-like prot 94.9 0.12 2.6E-06 30.9 5.5 52 1-58 1-52 (75)
158 TIGR00411 redox_disulf_1 small 94.9 0.13 2.8E-06 31.1 5.6 57 1-61 2-62 (82)
159 PF05768 DUF836: Glutaredoxin- 94.6 0.19 4.2E-06 30.6 5.9 54 2-60 2-57 (81)
160 PF11287 DUF3088: Protein of u 94.6 0.11 2.3E-06 33.6 4.7 67 9-78 23-108 (112)
161 COG0278 Glutaredoxin-related p 93.6 0.32 7E-06 30.8 5.4 65 7-73 27-92 (105)
162 PF13192 Thioredoxin_3: Thiore 92.8 0.73 1.6E-05 27.6 6.0 56 2-65 3-62 (76)
163 cd01659 TRX_superfamily Thiore 92.2 0.34 7.3E-06 26.7 4.0 53 2-57 1-58 (69)
164 PF11801 Tom37_C: Tom37 C-term 92.2 0.49 1.1E-05 33.3 5.4 40 114-153 112-153 (168)
165 PF04908 SH3BGR: SH3-binding, 91.4 0.66 1.4E-05 29.6 4.8 68 2-71 3-85 (99)
166 PF09635 MetRS-N: MetRS-N bind 90.1 2 4.3E-05 28.3 6.2 25 54-78 37-63 (122)
167 PF03960 ArsC: ArsC family; I 89.4 0.41 8.8E-06 31.0 2.7 29 5-33 1-29 (110)
168 KOG1668 Elongation factor 1 be 88.2 0.61 1.3E-05 34.2 3.2 60 116-182 10-69 (231)
169 TIGR03143 AhpF_homolog putativ 83.9 3.4 7.3E-05 35.0 5.9 57 2-64 480-541 (555)
170 PRK15317 alkyl hydroperoxide r 82.5 1.5 3.3E-05 36.6 3.4 74 2-76 120-197 (517)
171 TIGR03140 AhpF alkyl hydropero 82.3 1.4 3.1E-05 36.8 3.1 63 2-65 121-183 (515)
172 KOG0911 Glutaredoxin-related p 81.7 4.1 9E-05 29.9 4.8 65 7-73 151-215 (227)
173 cd02989 Phd_like_TxnDC9 Phosdu 79.4 10 0.00022 24.5 5.9 56 3-64 27-89 (113)
174 cd02947 TRX_family TRX family; 79.1 11 0.00024 22.3 6.2 54 2-61 14-74 (93)
175 TIGR01295 PedC_BrcD bacterioci 79.0 16 0.00034 24.1 6.7 32 2-33 27-62 (122)
176 cd02949 TRX_NTR TRX domain, no 78.2 9.1 0.0002 23.8 5.2 58 2-63 17-80 (97)
177 cd02975 PfPDO_like_N Pyrococcu 74.0 12 0.00025 24.2 5.0 49 5-57 29-80 (113)
178 cd02953 DsbDgamma DsbD gamma f 72.9 6.5 0.00014 24.7 3.6 55 2-57 15-77 (104)
179 TIGR02681 phage_pRha phage reg 72.4 5 0.00011 26.0 2.9 26 53-78 2-28 (108)
180 TIGR02187 GlrX_arch Glutaredox 65.8 31 0.00067 25.2 6.3 52 2-57 137-191 (215)
181 KOG2824 Glutaredoxin-related p 62.8 13 0.00027 28.4 3.7 59 12-72 149-211 (281)
182 COG3019 Predicted metal-bindin 62.5 13 0.00028 25.3 3.3 70 2-77 28-104 (149)
183 PF00085 Thioredoxin: Thioredo 62.4 33 0.00073 20.9 8.2 70 2-75 21-102 (103)
184 PTZ00051 thioredoxin; Provisio 56.4 44 0.00095 20.4 5.4 56 3-62 23-83 (98)
185 PF04134 DUF393: Protein of un 53.8 38 0.00081 21.7 4.5 72 4-76 1-77 (114)
186 cd02984 TRX_PICOT TRX domain, 53.6 46 0.00099 20.2 4.8 57 3-63 19-81 (97)
187 PF11417 Inhibitor_G39P: Loade 50.5 52 0.0011 19.5 6.1 63 65-145 5-69 (71)
188 TIGR02187 GlrX_arch Glutaredox 49.6 74 0.0016 23.1 6.0 56 2-61 23-88 (215)
189 PF09413 DUF2007: Domain of un 47.9 15 0.00033 21.1 1.7 31 3-33 2-32 (67)
190 cd02963 TRX_DnaJ TRX domain, D 42.5 89 0.0019 19.9 5.9 56 3-62 29-91 (111)
191 cd02957 Phd_like Phosducin (Ph 42.4 39 0.00084 21.6 3.2 56 3-65 29-91 (113)
192 cd04911 ACT_AKiii-YclM-BS_1 AC 41.5 30 0.00066 20.8 2.3 24 10-33 15-38 (76)
193 PHA02278 thioredoxin-like prot 35.0 1.2E+02 0.0026 19.2 6.4 57 5-63 21-85 (103)
194 cd02962 TMX2 TMX2 family; comp 34.4 1.6E+02 0.0034 20.3 5.9 57 4-64 53-122 (152)
195 PF01323 DSBA: DSBA-like thior 34.0 68 0.0015 22.4 3.7 34 2-35 2-40 (193)
196 COG5494 Predicted thioredoxin/ 33.8 1E+02 0.0022 22.7 4.3 58 1-63 12-70 (265)
197 PRK09266 hypothetical protein; 33.5 47 0.001 25.1 2.9 59 19-77 200-258 (266)
198 cd02997 PDI_a_PDIR PDIa family 33.5 71 0.0015 19.5 3.4 57 3-61 22-86 (104)
199 cd02951 SoxW SoxW family; SoxW 33.3 1.4E+02 0.0029 19.3 5.1 16 2-17 18-33 (125)
200 PF11823 DUF3343: Protein of u 30.9 60 0.0013 19.1 2.5 30 4-33 5-34 (73)
201 cd02959 ERp19 Endoplasmic reti 30.4 1.6E+02 0.0034 19.1 5.1 57 4-64 25-91 (117)
202 PRK15371 effector protein YopJ 30.3 2.3E+02 0.0051 22.0 6.0 63 110-175 23-87 (287)
203 COG3150 Predicted esterase [Ge 30.2 65 0.0014 23.0 2.8 32 2-33 3-34 (191)
204 cd02987 Phd_like_Phd Phosducin 30.1 1.1E+02 0.0024 21.6 4.1 57 4-65 89-150 (175)
205 PRK09381 trxA thioredoxin; Pro 29.9 1.4E+02 0.0031 18.5 6.5 56 4-63 27-88 (109)
206 cd02955 SSP411 TRX domain, SSP 29.9 1.7E+02 0.0037 19.3 5.0 63 4-66 21-97 (124)
207 PF07511 DUF1525: Protein of u 29.7 68 0.0015 21.0 2.7 26 50-75 81-107 (114)
208 cd08200 catalase_peroxidase_2 29.0 1.5E+02 0.0032 23.2 4.7 40 114-153 73-112 (297)
209 PF04659 Arch_fla_DE: Archaeal 28.8 1.6E+02 0.0034 18.8 4.2 43 130-174 4-47 (99)
210 cd06891 PX_Vps17p The phosphoi 28.7 43 0.00092 22.9 1.7 19 164-182 111-129 (140)
211 cd02952 TRP14_like Human TRX-r 28.1 1.8E+02 0.0039 19.1 5.8 59 8-66 38-106 (119)
212 COG3433 Aryl carrier domain [S 27.4 98 0.0021 18.5 2.8 34 143-177 31-69 (74)
213 PRK10996 thioredoxin 2; Provis 27.2 2E+02 0.0043 19.2 6.5 57 3-63 57-119 (139)
214 cd02956 ybbN ybbN protein fami 27.1 1.5E+02 0.0032 17.9 6.3 55 4-62 18-78 (96)
215 PHA03075 glutaredoxin-like pro 26.3 1.1E+02 0.0023 20.2 3.1 64 2-75 5-68 (123)
216 cd03003 PDI_a_ERdj5_N PDIa fam 25.9 1.7E+02 0.0036 18.0 5.1 55 3-61 23-83 (101)
217 PF00392 GntR: Bacterial regul 25.8 1.2E+02 0.0026 17.1 3.1 29 117-147 4-33 (64)
218 COG5515 Uncharacterized conser 25.6 48 0.001 19.0 1.3 21 2-22 3-27 (70)
219 cd02948 TRX_NDPK TRX domain, T 25.3 83 0.0018 19.6 2.6 54 4-62 23-83 (102)
220 PF11732 Thoc2: Transcription- 25.3 1.5E+02 0.0032 18.0 3.4 59 111-175 16-76 (77)
221 TIGR01764 excise DNA binding d 25.2 1.1E+02 0.0023 15.6 3.4 25 50-74 24-48 (49)
222 cd02999 PDI_a_ERp44_like PDIa 24.9 76 0.0017 19.8 2.3 53 3-60 23-82 (100)
223 cd02988 Phd_like_VIAF Phosduci 24.7 2.7E+02 0.0058 20.0 5.8 52 5-65 109-167 (192)
224 COG3453 Uncharacterized protei 23.9 1.1E+02 0.0025 20.3 2.9 63 9-76 43-108 (130)
225 PF14595 Thioredoxin_9: Thiore 23.4 57 0.0012 21.8 1.6 52 3-57 46-102 (129)
226 PRK11657 dsbG disulfide isomer 23.1 1E+02 0.0022 23.2 3.1 20 2-21 121-140 (251)
227 cd03020 DsbA_DsbC_DsbG DsbA fa 23.0 99 0.0022 22.0 2.9 31 2-32 81-113 (197)
228 cd00449 PLPDE_IV PyridoxaL 5'- 22.7 83 0.0018 23.4 2.5 57 19-75 196-254 (256)
229 cd02985 TRX_CDSP32 TRX family, 22.5 1.7E+02 0.0037 18.2 3.7 59 4-63 21-84 (103)
230 cd02954 DIM1 Dim1 family; Dim1 21.7 2.4E+02 0.0053 18.4 5.8 55 5-63 21-81 (114)
231 PRK06092 4-amino-4-deoxychoris 21.6 1.2E+02 0.0026 22.9 3.2 57 19-76 208-264 (268)
232 PF15608 PELOTA_1: PELOTA RNA 21.5 1.4E+02 0.0031 19.1 2.9 27 5-31 61-87 (100)
233 KOG0034 Ca2+/calmodulin-depend 21.5 2.8E+02 0.0061 19.9 4.8 44 142-185 141-184 (187)
234 cd01557 BCAT_beta_family BCAT_ 20.4 59 0.0013 24.8 1.3 57 19-75 211-271 (279)
235 PRK06852 aldolase; Validated 20.3 2E+02 0.0043 22.6 4.1 55 21-76 198-253 (304)
236 PRK10877 protein disulfide iso 20.3 1.3E+02 0.0028 22.3 3.1 22 2-23 111-132 (232)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.6e-39 Score=236.25 Aligned_cols=186 Identities=25% Similarity=0.392 Sum_probs=158.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCC
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
|||||+++.|++|++||++|+++|++|+.+.++.. ++.++++++||+|+||+|+++|.+|+||.||++||++++|..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999864 457899999999999999999999999999999999999987
Q ss_pred CCCCCcHHHHHHHHH--HH--------HHHhh-CCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHH
Q 029352 81 PLLPSDLKRKAINYQ--KY--------IEEKA-GADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 149 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~--~~--------~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~ 149 (194)
.++|.++.+++.+.+ .+ ..... ..+...+...+.+.+.+..+|++|++ ++|++|+++|+||+++++.
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~AD~~l~~~ 164 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLVDCYLAPL 164 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHHHHHHHHH
Confidence 899999888887665 11 11111 22334566777899999999999987 8999999999999999999
Q ss_pred HHHHHHhcCCCC--CCchhHHHHHHHHhcChhhhhhCCCCCCCCC
Q 029352 150 LYAAVNRFNLDM--TQFPLLLRLHEAYSKLPAFQNAAPEKQPDAP 192 (194)
Q Consensus 150 l~~~~~~~~~~~--~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p 192 (194)
+.++ ...+.++ +.+|+|++|++++.+||++++++.....+++
T Consensus 165 ~~~~-~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~~ 208 (211)
T PRK09481 165 LWRL-PVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMR 208 (211)
T ss_pred HHHH-HhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHHh
Confidence 9887 5566665 5799999999999999999999987665544
No 2
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-38 Score=214.00 Aligned_cols=191 Identities=53% Similarity=0.921 Sum_probs=171.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCC-CCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
..||+++.|.+++|||++|+.+||+|+.+++++..+ .....+|++.||+++||+|++||.+++||.||++||++.+|++
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 479999999999999999999999999999998765 4556799999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHH------------------HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHH
Q 029352 81 PLLPSDLKRKAINYQ------------------KYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 142 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~a 142 (194)
.|+|.++..|+...+ .++..... ......+..-+.+.+..||+.|..+.+.|-+|+++|+|
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~-~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEP-GYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhccccc-chhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 999999999999888 12222111 11255666678999999999999988999999999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCCCCCCCC
Q 029352 143 DLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPDAPSS 194 (194)
Q Consensus 143 D~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p~~ 194 (194)
|+++.+.++.. .++..++..||.+.+..+.+.+.|.|+.+.++.++|+|.+
T Consensus 165 Dl~L~pqv~nA-~rf~vdl~PYPti~ri~e~l~elpaFq~ahP~nQPD~P~~ 215 (217)
T KOG0868|consen 165 DLCLPPQVYNA-NRFHVDLTPYPTITRINEELAELPAFQAAHPDNQPDTPPE 215 (217)
T ss_pred hhccchhhhhh-hhccccCCcCchHHHHHHHHHhCHHHHhcCCCCCCCCCCC
Confidence 99999999999 8999999999999999999999999999999999999964
No 3
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=2.9e-37 Score=225.46 Aligned_cols=189 Identities=54% Similarity=0.916 Sum_probs=159.3
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCC-CCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCC
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~ 81 (194)
+||++..|++++++|++|+++||+|+.+.++... ++...+++.+.||+|+||+|++||.+|+||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999998632 345567899999999999999999999999999999999998878
Q ss_pred CCCCcHHHHHHHHH--HHHH----------------HhhC--CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcH
Q 029352 82 LLPSDLKRKAINYQ--KYIE----------------EKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 141 (194)
Q Consensus 82 l~p~~~~~~~~~~~--~~~~----------------~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~ 141 (194)
+.|.++.+++++++ .+.. ...+ .....+...+.+.+.|+.||++|++++++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 99998989988877 1110 0001 11123445567999999999999975568999999999
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCCCCCC
Q 029352 142 ADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPDAP 192 (194)
Q Consensus 142 aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p 192 (194)
||+++++.+.+. ...+..++.||+|++|+++|.+||++++++....+++|
T Consensus 161 ADi~~~~~l~~~-~~~~~~~~~~p~l~~~~~~~~~rp~~~~~~~~~~~~~~ 210 (210)
T TIGR01262 161 ADLCLVPQVYNA-ERFGVDLTPYPTLRRIAAALAALPAFQRAHPENQPDTP 210 (210)
T ss_pred HHHHHHHHHHHH-HHcCCCcccchHHHHHHHHHhcCHHHHHhCcccCCCCC
Confidence 999999999987 56666678999999999999999999999999987765
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-36 Score=221.19 Aligned_cols=182 Identities=27% Similarity=0.387 Sum_probs=149.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEe-----CC--EEeecHHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-----GD--FVVSDSFAILMYL 73 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-----~~--~~l~es~~I~~yL 73 (194)
|||||+.+ ++++++|+++|+++||+|+.+.+++..++...++++++||.|+||+|++ || .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 89999765 8999999999999999999999998777677789999999999999996 45 4799999999999
Q ss_pred HhhCCCCCCCCCcHHHHHHHHH--HHHHHh----------h------CCchHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 029352 74 EEKYPQPPLLPSDLKRKAINYQ--KYIEEK----------A------GADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 135 (194)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~--~~~~~~----------~------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 135 (194)
+++++ .+.|.++.+++++.. .+.... . ......+.....+.+.+..||++|++ ++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 99985 467888888888766 111110 0 01133455667789999999999987 79999
Q ss_pred CCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCC
Q 029352 136 GDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 188 (194)
Q Consensus 136 G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 188 (194)
|+++|+||+++++.+... ...+.+++.+|+|.+|++++.+||++++++.+..
T Consensus 156 Gd~~t~ADi~l~~~~~~~-~~~~~~~~~~P~l~~w~~r~~~rp~~~~~~~~~~ 207 (215)
T PRK13972 156 GENYSIADIACWPWVNAW-TRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQ 207 (215)
T ss_pred CCCCCHHHHHHHHHHHHH-hhcCCcchhCHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 999999999999887655 3446667889999999999999999998876653
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2.4e-36 Score=221.09 Aligned_cols=184 Identities=26% Similarity=0.282 Sum_probs=154.5
Q ss_pred CeeecccC--CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCC
Q 029352 1 MLKLFSYW--RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 1 m~~L~~~~--~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~ 78 (194)
||+||+++ .|++|++++++|+++||+|+.+.++...++...++++++||+|+||+|++||.+|+||.+|++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 78999975 6999999999999999999999999887777788999999999999999999999999999999999998
Q ss_pred CCC---CCCCcHHHHHHHHH--HHHH-Hh------------h---CCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 029352 79 QPP---LLPSDLKRKAINYQ--KYIE-EK------------A---GADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 137 (194)
Q Consensus 79 ~~~---l~p~~~~~~~~~~~--~~~~-~~------------~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 137 (194)
+.. ++|.++.+++++++ .+.. .. . ......+...+++.+.+..+|++|+.. ++|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~ 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGE 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCC
Confidence 755 99999999998876 1111 00 0 112234667788999999999999852 5799996
Q ss_pred CCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCCC
Q 029352 138 EVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQP 189 (194)
Q Consensus 138 ~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 189 (194)
+|+||+++++.+.++ ...+.++. |+|.+|++++.+||+|++++.+...
T Consensus 164 -~TlADi~l~~~l~~~-~~~~~~~~--p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 164 -WCIADTDLALMLNRL-VLHGDEVP--ERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred -ccHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 999999999999887 55565543 9999999999999999999876543
No 6
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=3.7e-36 Score=220.20 Aligned_cols=184 Identities=30% Similarity=0.352 Sum_probs=153.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC--
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~-- 79 (194)
||||+++.|+++++|+++|+++||+|+.+.++...++...+++.+.||+|+||+|++||.+|+||.+|++||+++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 799999999999999999999999999999998777777889999999999999999999999999999999999974
Q ss_pred CCCCCCcHHHHHHHHH--HH----H---------HHhh----C---CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 029352 80 PPLLPSDLKRKAINYQ--KY----I---------EEKA----G---ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 137 (194)
Q Consensus 80 ~~l~p~~~~~~~~~~~--~~----~---------~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 137 (194)
..++|.++.+++++.+ .+ + .... . .....+....++.+.++.||++|++ ++|++|+
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 160 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLGGD 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 2689999888888776 00 0 0011 1 1123455667899999999999987 7999999
Q ss_pred CCcHHHHhhHHHHHHHHHhcCC--CCCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 138 EVFLADLYLAPQLYAAVNRFNL--DMTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 138 ~~s~aD~~l~~~l~~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
++|+||+++++.+.+....... .++.+|+|.+|++++.+||++++++...
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 9999999999998876322221 2578999999999999999999987653
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=3.3e-35 Score=213.18 Aligned_cols=182 Identities=27% Similarity=0.421 Sum_probs=149.4
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCC-CCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQ 79 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~ 79 (194)
|+|||+..+ ++++++++|+++||+|+.+.+++..++ ...+++.++||.|+||+|+ +||.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 689987755 799999999999999999999976543 3457899999999999998 6889999999999999999987
Q ss_pred CCCC-CCcHHHHHHHHH--HHH--------HHhhC---CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHh
Q 029352 80 PPLL-PSDLKRKAINYQ--KYI--------EEKAG---ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLY 145 (194)
Q Consensus 80 ~~l~-p~~~~~~~~~~~--~~~--------~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~ 145 (194)
..+. |.++.+++++.. .+. ..... .+.......+.+.+.|+.+|+.|+. ++|++|+++|+||++
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRFTIADAY 157 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCCcHHhHH
Confidence 6655 567777776654 111 11111 1222355677899999999999987 789999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 146 LAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 146 l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
+++.+.+. ...+.+++.+|+|.+|++++.++|++++++...
T Consensus 158 l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 158 LFTVLRWA-YAVKLNLEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred HHHHHHHh-hccCCCcccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 99999888 666777788999999999999999999998764
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=3.5e-34 Score=209.91 Aligned_cols=183 Identities=28% Similarity=0.401 Sum_probs=149.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC--
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~-- 79 (194)
+|||+ ..++++++++++|.++|++|+.+.++...++...+++++.||.|+||+|+++|.+|+||.+|++||+++++.
T Consensus 3 ~~ly~-~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYG-PAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEc-CCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 69997 455679999999999999999999998766677889999999999999999999999999999999999875
Q ss_pred CCCCCCcHHHHHHHHH--HHH-----------------HHh---hCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 029352 80 PPLLPSDLKRKAINYQ--KYI-----------------EEK---AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 137 (194)
Q Consensus 80 ~~l~p~~~~~~~~~~~--~~~-----------------~~~---~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 137 (194)
..++|.++.+++++++ .+. ... ....+..+...+.+.+.++.||+.|+. ++|++|+
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 159 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAGD 159 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccCC
Confidence 3589998888887776 110 000 011223456677899999999999987 7999999
Q ss_pred CCcHHHHhhHHHHHHHHHhcC--CCCCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 138 EVFLADLYLAPQLYAAVNRFN--LDMTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 138 ~~s~aD~~l~~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
++|+||+++++.+.++....+ ..++.+|+|.+|++++.++|++++++...
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred CcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999999998877622222 23678999999999999999999988654
No 9
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=5e-34 Score=207.47 Aligned_cols=185 Identities=21% Similarity=0.269 Sum_probs=142.4
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCC--Cchhhh--hcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ--FSPDFL--KINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~--~~~~~~--~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
+++|||++.++++++||++|+++|++|+.+.++... +. ..+++. ..||+|+||+|++||.+|+||.||++||+++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 379999999999999999999999999999774211 00 001112 4799999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH------HHhhC----CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhh
Q 029352 77 YPQPPLLPSDLKRKAINYQKYI------EEKAG----ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 146 (194)
Q Consensus 77 ~~~~~l~p~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l 146 (194)
++ +.+.+..+++.++..+. ..... .....+...+.+.+.++.||+.|++++++|++|+++|+||+++
T Consensus 83 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l 159 (205)
T PTZ00057 83 YK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAV 159 (205)
T ss_pred cC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHH
Confidence 96 34555555555554110 00000 1122344567899999999999987556899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCCC
Q 029352 147 APQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQP 189 (194)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 189 (194)
++++.++....+.+++.+|+|.+|++++.++|++++++.++..
T Consensus 160 ~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 160 FNLYDDIETKYPNSLKNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred HHHHHHHHHhChhhhccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 9998887333466689999999999999999999999987754
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=206.07 Aligned_cols=176 Identities=40% Similarity=0.599 Sum_probs=149.7
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCC-EEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD-FVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~-~~l~es~~I~~yL~~~~~~~ 80 (194)
|+||++..||++.++++++.++|++|+.+.++... +...+++.++||.|+||+|++++ .+|+||.+|++||++++|..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999886 67789999999999999999665 49999999999999999876
Q ss_pred CCCCCcHH---HHHHHHH--HHH--------HH-hhC--------CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Q 029352 81 PLLPSDLK---RKAINYQ--KYI--------EE-KAG--------ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDE 138 (194)
Q Consensus 81 ~l~p~~~~---~~~~~~~--~~~--------~~-~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 138 (194)
.++|.++. +++.... .+. .. ... .....+.....+...++.+|..|+. ++|++|++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~ 157 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGDR 157 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCC
Confidence 59998775 5544444 100 00 000 2345677888899999999999999 99999999
Q ss_pred CcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhh
Q 029352 139 VFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 181 (194)
Q Consensus 139 ~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 181 (194)
+|+||+++++.+.++ ...+..++.+|++.+|++++.++|.++
T Consensus 158 ~tiAD~~~~~~~~~~-~~~~~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 158 FTIADIALAPLLWRL-ALLGEELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCHHHHHHHHHHHHh-hhcCcccccChHHHHHHHHHHcCCchh
Confidence 999999999999997 777777789999999999999999954
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.8e-33 Score=211.36 Aligned_cols=183 Identities=27% Similarity=0.395 Sum_probs=148.8
Q ss_pred CeeecccCCCchhHHHHHHHHhc------CCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC----CEEeecHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAIL 70 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~----~~~l~es~~I~ 70 (194)
|||||+. .|+++++|+++|+++ |++|+.+.++...+++..+++.++||.|+||+|+++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 6899975 599999999999997 999999999987777778899999999999999964 37999999999
Q ss_pred HHHHhhCCCCCCCCCcHHHHHHHHH--HHHHH-----------h--hCC---chHHHHHHHHHHHHHHHHHHHHhccCCC
Q 029352 71 MYLEEKYPQPPLLPSDLKRKAINYQ--KYIEE-----------K--AGA---DERDIWAKTHIGKGFAALEKLLKDYAGK 132 (194)
Q Consensus 71 ~yL~~~~~~~~l~p~~~~~~~~~~~--~~~~~-----------~--~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~ 132 (194)
+||++.++ +++|.++.+++++++ .+... . ..+ ....+....++.+.|..||++|++ ++
T Consensus 123 ~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~--~~ 198 (264)
T PRK11752 123 LYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE--HE 198 (264)
T ss_pred HHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--CC
Confidence 99999987 489999888888776 11100 0 011 122455566788999999999987 79
Q ss_pred cccCCCCcHHHHhhHHHHHHHHHh--c----CCCCCCchhHHHHHHHHhcChhhhhhCCCCC
Q 029352 133 YATGDEVFLADLYLAPQLYAAVNR--F----NLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQ 188 (194)
Q Consensus 133 ~l~G~~~s~aD~~l~~~l~~~~~~--~----~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 188 (194)
||+|+++|+|||++++.+.++... . ..+++.+|+|.+|+++|.+||++++++...+
T Consensus 199 fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 199 YIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred CCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 999999999999999988766221 1 1235789999999999999999999887764
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.4e-33 Score=203.59 Aligned_cols=180 Identities=27% Similarity=0.326 Sum_probs=145.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
|+||++..||++++||++|+++|++|+.+.++...+ ..++.+.||.|+||+|+ ++|.+++||.+|++||+++++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999998886432 34667789999999998 78899999999999999998877
Q ss_pred CCCCCcHHHHHHHHH--HH-----------HHHhhC-----CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHH
Q 029352 81 PLLPSDLKRKAINYQ--KY-----------IEEKAG-----ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 142 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~--~~-----------~~~~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~a 142 (194)
.++|.++.+++++++ .+ ...... .....+...+.+.+.|+.||++|.+ ++ ++|+++|+|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~A 154 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNLA 154 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCHH
Confidence 799998888876655 00 000001 1123455677899999999999987 67 999999999
Q ss_pred HHhhHHHHHHHHHh-cCCC-CCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 143 DLYLAPQLYAAVNR-FNLD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 143 D~~l~~~l~~~~~~-~~~~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
|+++++.+.++... .+.. ...+|+|.+|++++.+||+|+++.+..
T Consensus 155 Di~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~~ 201 (202)
T PRK10357 155 TIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPPK 201 (202)
T ss_pred HHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCCCC
Confidence 99999999877221 2222 477999999999999999999987754
No 13
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-32 Score=195.81 Aligned_cols=182 Identities=27% Similarity=0.447 Sum_probs=155.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcC-CCCCcceEEeCCEEeecHHHHHHHHHhhCC-C
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~l~~~~~~l~es~~I~~yL~~~~~-~ 79 (194)
++||++..|||++|++++|+++||+|+.+..++.+ ++++++..| +.++||||+.||.+|+||..|++||++.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 68999999999999999999999999999999763 688999999 789999999999999999999999999999 5
Q ss_pred CCCCCCcHHHHHHHHH--HHHHH-------h---hCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhH
Q 029352 80 PPLLPSDLKRKAINYQ--KYIEE-------K---AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 147 (194)
Q Consensus 80 ~~l~p~~~~~~~~~~~--~~~~~-------~---~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~ 147 (194)
.+++|.++.+|++... .++.. . ....+..+...+.+...|..+|+.|.. +++|+.|++++++|++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~vDi~~~ 165 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGFVDIAIG 165 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCHhhhhHH
Confidence 8999999999998877 22221 1 123356788888999999999999993 489999999999999999
Q ss_pred HHHHHHHHhc---C-CC---CCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 148 PQLYAAVNRF---N-LD---MTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 148 ~~l~~~~~~~---~-~~---~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
+.+....... + .. .+++|.|.+|.+++.+++.+++++++.
T Consensus 166 p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 166 PSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred hhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCH
Confidence 7776663221 2 12 488999999999999999999998864
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=2.1e-32 Score=200.02 Aligned_cols=176 Identities=29% Similarity=0.361 Sum_probs=139.4
Q ss_pred cCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCCCCCCc
Q 029352 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (194)
Q Consensus 7 ~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~l~p~~ 86 (194)
+..||+|++|+++|+++|++|+.+.+++.. .+++++++||.|+||+|++||.+|+||.+|++||++++++..+ .+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~ 91 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KT 91 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CC
Confidence 466999999999999999999999999753 4678999999999999999999999999999999999986545 35
Q ss_pred HHHHHHHHHHH---HHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc----CC
Q 029352 87 LKRKAINYQKY---IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF----NL 159 (194)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~----~~ 159 (194)
+.+++.+...+ +..........+...+.+.+.|..+|++|+.++++|++|+++|+||+++++.+.++.... +.
T Consensus 92 ~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~ 171 (213)
T PLN02378 92 PAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSW 171 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCC
Confidence 56666665511 111111111223445678889999999998544799999999999999999987752111 12
Q ss_pred C-CCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 160 D-MTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 160 ~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
. .+.+|+|++|++++.+||++++++...
T Consensus 172 ~~~~~~p~l~~w~~~~~~rpa~~~~~~~~ 200 (213)
T PLN02378 172 SVPESFPHVHNYMKTLFSLDSFEKTKTEE 200 (213)
T ss_pred CchhHhHHHHHHHHHHhcCCCeecccCCh
Confidence 2 377999999999999999999988765
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3e-31 Score=194.59 Aligned_cols=176 Identities=24% Similarity=0.291 Sum_probs=142.8
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC---CCCCC
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ---PPLLP 84 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~---~~l~p 84 (194)
..||+|++||++|.++||+|+.+.+++.. ..++|+++||.|+||||+++|.+|+||.+|++||++.++. +.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 45899999999999999999999999763 4689999999999999999999999999999999999864 44666
Q ss_pred CcHHHHHHHHH---HHHHHhhC-CchHHHHHHHHHHHHHHHHHHHHhcc----------------CCCcccCCCCcHHHH
Q 029352 85 SDLKRKAINYQ---KYIEEKAG-ADERDIWAKTHIGKGFAALEKLLKDY----------------AGKYATGDEVFLADL 144 (194)
Q Consensus 85 ~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~----------------~~~~l~G~~~s~aD~ 144 (194)
.++..++.... .+..-... .....+...+.+.+.|+.||+.|.+. +++|+.|+++|+|||
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~ 173 (236)
T TIGR00862 94 KHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADC 173 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhH
Confidence 67666554322 11111111 22334455667999999999999741 489999999999999
Q ss_pred hhHHHHHHHHHhc-----CCC-CCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 145 YLAPQLYAAVNRF-----NLD-MTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 145 ~l~~~l~~~~~~~-----~~~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
++++.+.++ ... +.+ .+++|+|.+|++++.++++|+++++..
T Consensus 174 ~l~p~l~~l-~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~ 221 (236)
T TIGR00862 174 NLLPKLHIV-KVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDD 221 (236)
T ss_pred HHHHHHHHH-HHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCCh
Confidence 999999998 432 667 599999999999999999999998764
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=2e-30 Score=194.08 Aligned_cols=174 Identities=26% Similarity=0.351 Sum_probs=137.8
Q ss_pred cCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCCCCCCc
Q 029352 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (194)
Q Consensus 7 ~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~l~p~~ 86 (194)
...||+|++++++|+++||+|+.+.+++. ..+++++++||.|+||+|+++|.+|+||.+|++||++++++..+. +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--T 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--C
Confidence 34599999999999999999999999875 357889999999999999988899999999999999999876553 5
Q ss_pred HHHHHHHHHHHHH---HhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc----CC
Q 029352 87 LKRKAINYQKYIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF----NL 159 (194)
Q Consensus 87 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~----~~ 159 (194)
+.+++.+...+.. .........+...+.+.+.+..||++|+.+ ++|++|+++|+||+++++.+.++.... +.
T Consensus 145 ~~era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~ 223 (265)
T PLN02817 145 PPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGPKLYHLEIALGHYKNW 223 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677776651111 111111112233457888899999999853 699999999999999999998763211 22
Q ss_pred C-CCCchhHHHHHHHHhcChhhhhhCCC
Q 029352 160 D-MTQFPLLLRLHEAYSKLPAFQNAAPE 186 (194)
Q Consensus 160 ~-~~~~p~l~~~~~~~~~~p~~~~~~~~ 186 (194)
+ .+.+|+|++|++++.++|+|+++.+.
T Consensus 224 ~i~~~~P~L~~w~~ri~~rps~~~~~~~ 251 (265)
T PLN02817 224 SVPDSLPFVKSYMKNIFSMESFVKTRAL 251 (265)
T ss_pred CccccCHHHHHHHHHHhcchhHhhcCCC
Confidence 3 37899999999999999999998774
No 17
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-30 Score=182.46 Aligned_cols=183 Identities=23% Similarity=0.277 Sum_probs=151.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~ 81 (194)
+||+|++..++++.+|++++..|++|++.++...+. ....+...|+|++|+|..||..|.||.||++||+++++
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 699999999999999999999999999999985531 34455668999999999999999999999999999996
Q ss_pred CCCCcHHHHHHHHH------HHHHH----hh-----C-CchHHH-HHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHH
Q 029352 82 LLPSDLKRKAINYQ------KYIEE----KA-----G-ADERDI-WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADL 144 (194)
Q Consensus 82 l~p~~~~~~~~~~~------~~~~~----~~-----~-~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~ 144 (194)
+.+.++.+.++++. .+... .. + .+...+ .........+..+++.|+.+++.|++|+++|+||+
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl 157 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADL 157 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHH
Confidence 99999999999998 11111 11 0 011111 45557888999999999988889999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCCCchhHHHHHHHHhcChhhhhhCCCCCCC
Q 029352 145 YLAPQLYAAVNRF-NLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPD 190 (194)
Q Consensus 145 ~l~~~l~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 190 (194)
.++..+..+.... ...++.+|.|+++.+++.++|.+++++..+...
T Consensus 158 ~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~t 204 (206)
T KOG1695|consen 158 VIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPVT 204 (206)
T ss_pred HHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCCC
Confidence 9999999984422 333688899999999999999999999887543
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-30 Score=187.81 Aligned_cols=182 Identities=41% Similarity=0.538 Sum_probs=158.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCC-CC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~-~~ 80 (194)
|+||++..++.|+++.++++++|++|+.+.+++..+++..++|+++||.++||+|+++|..++||.||+.||.+++. .+
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999886 33
Q ss_pred C-CCCCcHHHHHHHHH----------HH--HHH-----hhC---CchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCC
Q 029352 81 P-LLPSDLKRKAINYQ----------KY--IEE-----KAG---ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 139 (194)
Q Consensus 81 ~-l~p~~~~~~~~~~~----------~~--~~~-----~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 139 (194)
. ++|.+..+++.+++ .. ... ..+ ..........++...++.+|..|.+ +.|++|+++
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~~~ 160 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGDQL 160 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCCcc
Confidence 4 89999999999988 00 000 111 2344678888999999999999999 999999999
Q ss_pred cHHHHhhHHHHHHHH-Hhc-CCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 140 FLADLYLAPQLYAAV-NRF-NLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 140 s~aD~~l~~~l~~~~-~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
|+||+.+.+.+..+. ... .....++|++.+|++++.++|.++++..
T Consensus 161 tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred cHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 999999999999973 222 3346899999999999999999888654
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=6.1e-29 Score=181.49 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=125.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
||||++..||+|+++|++|+++||+|+.+.++... . ....+.||.++||+|+ +||.+++||.+|++||++++|+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~--~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--E--ATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--h--hhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998886332 1 1225788999999995 88999999999999999999875
Q ss_pred CCCC-CcHHHHHHHHH-------HHHHHhhC---C----ch---------------------HHHHHHHHHHHHHHHHHH
Q 029352 81 PLLP-SDLKRKAINYQ-------KYIEEKAG---A----DE---------------------RDIWAKTHIGKGFAALEK 124 (194)
Q Consensus 81 ~l~p-~~~~~~~~~~~-------~~~~~~~~---~----~~---------------------~~~~~~~~~~~~l~~le~ 124 (194)
.+.+ .....+..... .+...... + .. ..+...+.+.+.|+.+|+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 156 (210)
T PRK10387 77 LLTGKRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDP 156 (210)
T ss_pred cCCCcccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5542 22222221111 00000000 0 00 013456789999999999
Q ss_pred HHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhh
Q 029352 125 LLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 125 ~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 180 (194)
+|+ ++|++|+++|+||+++++.+.++ ...+. .+.+|+|.+|++||.+||++
T Consensus 157 ~L~---~~~l~G~~~s~ADi~l~~~l~~~-~~~~~-~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 157 LIV---KPNAVNGELSTDDIHLFPILRNL-TLVKG-IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred Hhc---CccccCCCCCHHHHHHHHHHhcc-eeecC-CCCCHHHHHHHHHHHHHhCC
Confidence 995 39999999999999999999988 33322 34569999999999999876
No 20
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=172.46 Aligned_cols=184 Identities=25% Similarity=0.320 Sum_probs=149.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC-C
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-P 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~-~ 80 (194)
+.||.++.|-.+|+||+++.++||+|+...|++..+++..++|..+||.|.|||++++..+|+++..|++|+++.+.+ .
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998753 4
Q ss_pred CCCCC-cHHHHHHHHH-----------------------------------------------------------HHHHH
Q 029352 81 PLLPS-DLKRKAINYQ-----------------------------------------------------------KYIEE 100 (194)
Q Consensus 81 ~l~p~-~~~~~~~~~~-----------------------------------------------------------~~~~~ 100 (194)
.|.|. +..+..++.. .+...
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 56665 3333333332 01100
Q ss_pred h-------h--CCchHHHHHHHHHHHHHHHHHHHHhcc--CCCcccCCCCcHHHHhhHHHHHHHHHhcCCC---C--CCc
Q 029352 101 K-------A--GADERDIWAKTHIGKGFAALEKLLKDY--AGKYATGDEVFLADLYLAPQLYAAVNRFNLD---M--TQF 164 (194)
Q Consensus 101 ~-------~--~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~---~--~~~ 164 (194)
. . .......+....+...|+.+|..|..+ -..||+|+.+|+||+.+.+.|+++ ...|.. + ...
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL-~~Lg~e~~yw~~gsr 265 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRL-KFLGLEKKYWEDGSR 265 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHH-HHcccHHHhcccCCC
Confidence 0 0 011235556667788888888888763 268999999999999999999999 777764 3 478
Q ss_pred hhHHHHHHHHhcChhhhhhCCC
Q 029352 165 PLLLRLHEAYSKLPAFQNAAPE 186 (194)
Q Consensus 165 p~l~~~~~~~~~~p~~~~~~~~ 186 (194)
|+|..|+.++.+|+++++++++
T Consensus 266 pnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 266 PNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred ccHHHHHHHHHhhhHHHHhhhh
Confidence 9999999999999999999875
No 21
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=4.6e-27 Score=171.27 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=123.5
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCCC
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~~ 81 (194)
|||++..||+|++||++|.++|++|+.+.+.... .....+.||.|+||+|+ +||.+++||.+|++||++++|.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~----~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD----EETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc----chhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 6899999999999999999999999988765322 12347889999999998 899999999999999999997644
Q ss_pred CCCCc-HHHHHHHHH--HHHHHhh----CC------------------ch-----------HHHHHHHHHHHHHHHHHHH
Q 029352 82 LLPSD-LKRKAINYQ--KYIEEKA----GA------------------DE-----------RDIWAKTHIGKGFAALEKL 125 (194)
Q Consensus 82 l~p~~-~~~~~~~~~--~~~~~~~----~~------------------~~-----------~~~~~~~~~~~~l~~le~~ 125 (194)
+.+.. ...+..... .+..... .. .+ ..+...+.+.+.|+.+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (209)
T TIGR02182 77 LTGKVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKL 156 (209)
T ss_pred CCCCChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44332 221221111 1111000 00 00 0135667799999999999
Q ss_pred HhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCch-hHHHHHHHHhcChhh
Q 029352 126 LKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFP-LLLRLHEAYSKLPAF 180 (194)
Q Consensus 126 L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 180 (194)
|++ ++|+.| ++|+||+++++.+.++ ...+. . .+| +|.+|++||.+++++
T Consensus 157 L~~--~~~l~g-~~TiADi~l~~~l~~~-~~~~~-~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 157 IDG--PNAVNG-ELSEDDILVFPLLRNL-TLVAG-I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HhC--ccccCC-CCCHHHHHHHHHhcCe-eeecC-C-CCChHHHHHHHHHHHHhCC
Confidence 998 899955 6999999999999887 44321 2 256 999999999998875
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=1.5e-22 Score=168.70 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=122.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
++||+.+.+ .+.++.++|++.|++|+.+. .+|+|+||+|+ +||.+++||.||++||++.++..
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 589965554 56789999999999999863 25799999999 68899999999999999999887
Q ss_pred CCCCCcHHHHHHHHH--HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHh-c
Q 029352 81 PLLPSDLKRKAINYQ--KYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-F 157 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~-~ 157 (194)
.|+|.++.+++++.+ .+... ... ...+...++.||++|+. ++||+|+++|+||+++++.+...... .
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~-~~~-------~~~l~~~L~~LE~~L~~--rtYLvGd~lTLADIaL~~~L~~~~~~~~ 136 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPT-FSS-------GSEFENACEYVDGYLAS--RTFLVGYSLTIADIAIWSGLAGSGQRWE 136 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhh-ccc-------HHHHHHHHHHHHHHhcc--CCeecCCCCCHHHHHHHHHHHhhhhhhh
Confidence 899999989988876 22221 111 12467789999999988 89999999999999999988654111 1
Q ss_pred CC-CCCCchhHHHHHHHHhcChh
Q 029352 158 NL-DMTQFPLLLRLHEAYSKLPA 179 (194)
Q Consensus 158 ~~-~~~~~p~l~~~~~~~~~~p~ 179 (194)
+. ..+.+|+|.+|++++.++|+
T Consensus 137 ~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 137 SLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred cccccccCHHHHHHHHHHHhCCC
Confidence 22 25789999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.4e-21 Score=133.90 Aligned_cols=176 Identities=25% Similarity=0.301 Sum_probs=140.3
Q ss_pred CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCCCCCCcHH
Q 029352 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDLK 88 (194)
Q Consensus 9 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~l~p~~~~ 88 (194)
.||+||++.+.|..+|++|++.-|++.+ ++++|++++|.+++|+|..|+..++||..|-++|.+.++.+.+.--.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 5999999999999999999999999774 6889999999999999999999999999999999999987543322233
Q ss_pred HHHHHHH----HHHHHhhCCch-HHHHHHHHHHHHHHHHHHHHhc-cCCCcccCCCCcHHHHhhHHHHHHHHHhcC----
Q 029352 89 RKAINYQ----KYIEEKAGADE-RDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLADLYLAPQLYAAVNRFN---- 158 (194)
Q Consensus 89 ~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~---- 158 (194)
|.+-+-. .|..-...+.+ +-+.....+-+.|..||++|+. +.++|+.|+++|.||+.+.+-|+-+....+
T Consensus 97 E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~ 176 (221)
T KOG1422|consen 97 ESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKN 176 (221)
T ss_pred HHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcC
Confidence 4433333 22222122323 3455556788889999999998 779999999999999999999999843333
Q ss_pred CCC-CCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 159 LDM-TQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 159 ~~~-~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
.++ +..+.+.+|+..+.++.+|..+.+..
T Consensus 177 ~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d 206 (221)
T KOG1422|consen 177 FEIPASLTGVWRYLKNAYARDEFTNTCPAD 206 (221)
T ss_pred CCCchhhhHHHHHHHHHHhHHHhhcCCchH
Confidence 233 77899999999999999999887764
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.84 E-value=9.8e-21 Score=114.95 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=68.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
++||++..|++|+++|++|+++|++|+.+.+++..++...+++.++||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999887666677889999999999999999999999999999985
No 25
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.84 E-value=1.6e-20 Score=116.65 Aligned_cols=77 Identities=47% Similarity=0.709 Sum_probs=70.5
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC---CEEeecHHHHHHHHHhhC
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG---DFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~---~~~l~es~~I~~yL~~~~ 77 (194)
|++||++.. |+|+++|++|+++|++|+.+.++...+....+++.+.||.++||+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 899998875 9999999999999999999999876666677899999999999999976 899999999999999987
Q ss_pred C
Q 029352 78 P 78 (194)
Q Consensus 78 ~ 78 (194)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 26
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.83 E-value=2.9e-20 Score=113.52 Aligned_cols=74 Identities=45% Similarity=0.671 Sum_probs=69.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
|+||+++.|++|++++++|+++|++|+.+.+++..++...+++.+.||.|++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999876666778999999999999999999999999999999974
No 27
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=2.8e-20 Score=114.29 Aligned_cols=75 Identities=28% Similarity=0.278 Sum_probs=66.4
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEe--CCEEeecHHHHHHHHHhhC
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD--GDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~~I~~yL~~~~ 77 (194)
|++||+++.||+|++++++|.++||+|+.+.++ .+....+++.+.||.++||+|++ +|..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 899999999999999999999999999998885 23334578889999999999995 4789999999999999864
No 28
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.82 E-value=9.4e-20 Score=111.77 Aligned_cols=76 Identities=49% Similarity=0.751 Sum_probs=69.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~ 77 (194)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999977666666789999999999999999999999999999999864
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.82 E-value=1.2e-19 Score=111.40 Aligned_cols=76 Identities=47% Similarity=0.722 Sum_probs=69.4
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
.++||++..|++|+++|++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|..++||.+|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3799999999999999999999999999999987665566788999999999999999999999999999999863
No 30
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.81 E-value=1e-19 Score=111.28 Aligned_cols=74 Identities=47% Similarity=0.785 Sum_probs=68.5
Q ss_pred ecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCC
Q 029352 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
||++..||+|+++|++|.++||+|+.+.++... ..+++.+.||.++||+|++||.+++||.+|++||++++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998543 47889999999999999999999999999999999999753
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=2.1e-19 Score=109.32 Aligned_cols=73 Identities=41% Similarity=0.666 Sum_probs=67.7
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
++||+++.||+|+++|++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999876666677889999999999999999999999999999984
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.80 E-value=2.6e-19 Score=108.92 Aligned_cols=73 Identities=40% Similarity=0.513 Sum_probs=66.6
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
|+||++..|++++++|++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998865444567889999999999999999999999999999984
No 33
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=4.1e-19 Score=108.08 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=67.0
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~ 77 (194)
|+||+++.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998854 456789999999999999999999999999999999864
No 34
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.79 E-value=5.4e-19 Score=108.20 Aligned_cols=74 Identities=50% Similarity=0.745 Sum_probs=65.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCC-CCcceEEeC-CEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDG-DFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~-~~~l~es~~I~~yL~~ 75 (194)
|+|+++...+++.++|++|+++|++|+.+.++...++++.+++.+.||. |++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 5677777777999999999999999999999987777777999999999 999999988 9999999999999985
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.79 E-value=7.3e-19 Score=108.08 Aligned_cols=76 Identities=41% Similarity=0.550 Sum_probs=68.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC-CEEeecHHHHHHHHHhhCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~~I~~yL~~~~~ 78 (194)
|+||++..+ .++++|++|+++|++|+.+.++...++...+++.+.||.+++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589988865 689999999999999999999977666678899999999999999965 8999999999999999874
No 36
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.79 E-value=9.2e-19 Score=107.35 Aligned_cols=76 Identities=46% Similarity=0.710 Sum_probs=68.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~ 78 (194)
|+||++.. ++++++|++|+++|++|+.+.++...+....+++.+.||.+++|+|+++|..++||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998765 78999999999999999999998765556678899999999999999999999999999999998864
No 37
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.79 E-value=6.8e-19 Score=107.11 Aligned_cols=73 Identities=58% Similarity=0.955 Sum_probs=67.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
|+||++..|++++++|++|+++|++|+.+.+++..+....+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999986666667889999999999999999999999999999984
No 38
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.79 E-value=9e-19 Score=106.85 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=66.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCC-CCcceEEeCCEEeecHHHHHHHHHhhC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~~I~~yL~~~~ 77 (194)
|+||++..||+|+++|++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988754 456788899995 999999999999999999999998763
No 39
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.78 E-value=8.1e-19 Score=107.29 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=66.2
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEe-CCEEeecHHHHHHHHHh
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~~I~~yL~~ 75 (194)
|||+++.|++++++|++|+++|++|+.+.++...+ +..++++++||.|++|+|+. ||..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999997644 66789999999999999995 68999999999999975
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.78 E-value=7e-19 Score=107.26 Aligned_cols=73 Identities=44% Similarity=0.626 Sum_probs=66.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~ 74 (194)
|+||+++.|++|+++|++|+++|++|+.+.++...+....+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999998765555677899999999999999 68899999999999985
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=4.6e-19 Score=107.74 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=64.6
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
++||+++.+++|+++|++|+++|++|+.+.++.. ...+++...||.|++|+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 6899999999999999999999999999999752 3345788999999999999999999999999999976
No 42
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.77 E-value=2.5e-18 Score=107.45 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ 79 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~ 79 (194)
..||+|+++|++|+++||+|+.+.+++. ..+++|.++||.|+||+|+++|.+++||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 4589999999999999999999999866 35789999999999999999999999999999999998864
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.77 E-value=9.7e-19 Score=106.13 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=63.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
++||++..+++|+++|++|+++|++|+.+.++...+ ...++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 689999999999999999999999999999885432 234578899999999999999999999999999974
No 44
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.76 E-value=3.4e-18 Score=106.10 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=63.5
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCC-chhhhh-----cCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQF-SPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
+|||+..++.|+++|++|+++||+|+.+.+++..++.. .+++.+ .+|+++||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 79999999999999999999999999999997654432 234432 239999999999999999999999999876
Q ss_pred C
Q 029352 77 Y 77 (194)
Q Consensus 77 ~ 77 (194)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 45
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-17 Score=113.38 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=121.4
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~ 80 (194)
|+||-+..||||.|+|+++..+|||++......++.+ .+ ..+--..+||+|+ +||..+.||..|++|+++..++.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp---~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-TP---IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc-Ch---hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 7899999999999999999999999999877744321 11 2233456899999 88999999999999999988753
Q ss_pred CCCCC-cHHHHHHHHH---------------------------HHHHHh-hCCc-------hHHHHHHHHHHHHHHHHHH
Q 029352 81 PLLPS-DLKRKAINYQ---------------------------KYIEEK-AGAD-------ERDIWAKTHIGKGFAALEK 124 (194)
Q Consensus 81 ~l~p~-~~~~~~~~~~---------------------------~~~~~~-~~~~-------~~~~~~~~~~~~~l~~le~ 124 (194)
-+... .+.-.+..+. .++... .... .......+++...|..+++
T Consensus 77 ~lt~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~ 156 (215)
T COG2999 77 LLTGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDK 156 (215)
T ss_pred hhccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHH
Confidence 23322 2222222221 111111 1111 2356677788888888888
Q ss_pred HHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhh
Q 029352 125 LLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 181 (194)
Q Consensus 125 ~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 181 (194)
++.. ..-+- ..+|+-|+.+|++|+.+....|..++ .++..|..+|++...+.
T Consensus 157 Li~~--~s~~n-~~l~~ddi~vFplLRnlt~v~gi~wp--s~v~dy~~~msektqV~ 208 (215)
T COG2999 157 LIVG--PSAVN-GELSEDDILVFPLLRNLTLVAGIQWP--SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HhcC--cchhc-cccchhhhhhhHHhccceecccCCCc--HHHHHHHHHHHHhhCcc
Confidence 8886 33233 45899999999999998666676665 47999999999876654
No 46
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.75 E-value=7.5e-18 Score=102.97 Aligned_cols=68 Identities=32% Similarity=0.395 Sum_probs=61.7
Q ss_pred CeeecccC-------CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHH
Q 029352 1 MLKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 1 m~~L~~~~-------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL 73 (194)
|++||++. .||+|++++++|+++|++|+.+.++. .+.+|.|++|+|+++|..++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 89999988 58999999999999999999987762 26789999999999999999999999999
Q ss_pred HhhCC
Q 029352 74 EEKYP 78 (194)
Q Consensus 74 ~~~~~ 78 (194)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99863
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.75 E-value=5.2e-18 Score=102.63 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=60.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC-CEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~~I~~yL~~ 75 (194)
|+||++..||+|+++|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999999887321 2244578899999999965 8999999999999974
No 48
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.75 E-value=7.6e-18 Score=101.87 Aligned_cols=68 Identities=31% Similarity=0.520 Sum_probs=62.3
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEe-CCEEeecHHHHHHHH
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~~I~~yL 73 (194)
+||++..||+|++++++|+++|++|+.+.++... ..+++.+.||.|+||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998653 3578999999999999996 599999999999996
No 49
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=7e-18 Score=106.46 Aligned_cols=71 Identities=34% Similarity=0.431 Sum_probs=64.3
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC-CEEeecHHHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLE 74 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~~I~~yL~ 74 (194)
|++||++..||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999999988542 35678899999999999965 899999999999985
No 50
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=118.89 Aligned_cols=168 Identities=19% Similarity=0.156 Sum_probs=114.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCC--C
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP--Q 79 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~--~ 79 (194)
++||.+..||+|.+||..|.+.||+|.+++|++-. ..+ .+.+...+||+|...|..+.||..|+.-|+.... .
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~----r~e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL----RQE-IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh----hhh-ccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 58999999999999999999999999999998542 222 2445688999999767779999999876633210 0
Q ss_pred ------CCCCC------C------------------------------cHHHHHHHHH----------------------
Q 029352 80 ------PPLLP------S------------------------------DLKRKAINYQ---------------------- 95 (194)
Q Consensus 80 ------~~l~p------~------------------------------~~~~~~~~~~---------------------- 95 (194)
..++| + +...|..+++
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 01122 1 1112222332
Q ss_pred ----------------------------HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhH
Q 029352 96 ----------------------------KYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 147 (194)
Q Consensus 96 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~ 147 (194)
.++.......-.....++.+-+.++.+-..|+. .++|+.|++|++||+.+|
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhhhhh
Confidence 000111111111222566677777777777864 389999999999999999
Q ss_pred HHHHHHHHhcC--CCCCCchhHHHHHHHHhc
Q 029352 148 PQLYAAVNRFN--LDMTQFPLLLRLHEAYSK 176 (194)
Q Consensus 148 ~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~ 176 (194)
++|..+ .... .+.-+..++..||.+|++
T Consensus 325 Gvl~sm-~gc~afkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 325 GVLRSM-EGCQAFKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhHh-hhhhHHHHHHhcchHHHHHHHHHH
Confidence 999988 3332 234556899999999986
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.3e-17 Score=101.39 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=63.5
Q ss_pred eeecccCCCchhHHHHHHHHh--cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~ 74 (194)
|+||++..||+|+++|++|.+ +|++|+.+.++.. ...+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 689999999999999999999 8999999998743 3467899999999999998 68899999999999985
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.72 E-value=2.2e-17 Score=103.12 Aligned_cols=70 Identities=39% Similarity=0.518 Sum_probs=60.3
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC-CEEeecHHHHHHHHHhhCC
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~~I~~yL~~~~~ 78 (194)
..|++|+++|++|+++|++|+.+.++.........++ +.||.+++|+|+++ |..++||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999999999999865443333444 78999999999988 8999999999999999874
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.4e-17 Score=100.97 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=61.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhc-----CCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-----NPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
++||+++.+++++++|++|+++|++|+.+.++.. +++.+. .|+|+||+|++||.+++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 5899999999999999999999999999988742 222222 36999999999999999999999999998
Q ss_pred CC
Q 029352 77 YP 78 (194)
Q Consensus 77 ~~ 78 (194)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 75
No 54
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.71 E-value=5.6e-17 Score=97.65 Aligned_cols=68 Identities=57% Similarity=0.842 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHhcCCcceEEEccc-CCCCCCchhhhhcCCCCCcceEEe-CCEEeecHHHHHHHHHhh
Q 029352 9 RSSCSHRVRIGLNLKGLEYEYKAVNL-VKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 9 ~~~~~~~vr~~l~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~~I~~yL~~~ 76 (194)
.|||++|++++|+++|++|+...+.. ..+....+++.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988853 234455689999999999999995 899999999999999874
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.69 E-value=1.5e-16 Score=97.68 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=61.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeC----CEEeecHHHHHHHHHhhC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~----~~~l~es~~I~~yL~~~~ 77 (194)
++||+++.||+|+++|++|.++||+|+.+.++... ..+ ...+|.++||+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 78999999999999999999999999999886431 223 356999999999954 789999999999999864
No 56
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=3.5e-16 Score=94.95 Aligned_cols=67 Identities=39% Similarity=0.452 Sum_probs=60.0
Q ss_pred cCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 7 ~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
...|++++++|++|+++|++|+.+.++...+ ...+++.+.||+|++|+|+++|.+++||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4569999999999999999999999987543 345789999999999999999999999999999984
No 57
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.65 E-value=7.4e-16 Score=92.49 Aligned_cols=71 Identities=49% Similarity=0.790 Sum_probs=62.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
++||++..||+|+++|++|+++|++|+.+.++..... ..++.+.+|.+++|+|+.+|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998854322 2257889999999999999999999999999984
No 58
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=110.62 Aligned_cols=181 Identities=24% Similarity=0.300 Sum_probs=129.4
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcc--eEEEcccCCCCCCchhhh----------------------hcCCC----CCc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEY--EYKAVNLVKGEQFSPDFL----------------------KINPI----GYV 53 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~--~~~~v~~~~~~~~~~~~~----------------------~~~p~----~~v 53 (194)
+.||.+-.||++++..+.=+.+|++= ....|.+.-. .+...|. ...|. -+|
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~-~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMD-ENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEeccccc-CCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 57999999999999999999999852 2222221100 0111111 11222 279
Q ss_pred ceEEeCC---EEeecHHHHHHHHHhhCC-----CCCCCCCcHHHHHHHHH----------HHHHHhhCCchHHHHHHHHH
Q 029352 54 PALVDGD---FVVSDSFAILMYLEEKYP-----QPPLLPSDLKRKAINYQ----------KYIEEKAGADERDIWAKTHI 115 (194)
Q Consensus 54 P~l~~~~---~~l~es~~I~~yL~~~~~-----~~~l~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 115 (194)
|||.|.. .+-.||..|++-+...+. ..+++|..-.......+ -+...+...+++-++..+.+
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~l 210 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKL 210 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHH
Confidence 9999643 556799999999876543 25688886654444443 23334444667788888899
Q ss_pred HHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc-C-----C-CCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 116 GKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-N-----L-DMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 116 ~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~-~-----~-~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
-..|+.+|+.|+. +.|++|+++|.||+-+|+.|.++...+ + . .+..||+|..|.+.+.+.|+|.++..
T Consensus 211 F~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 211 FEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccc
Confidence 9999999999999 999999999999999999998884222 1 1 14669999999999999999998764
No 59
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-14 Score=105.15 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=113.9
Q ss_pred CchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCCCC-CCCC-cH
Q 029352 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP-LLPS-DL 87 (194)
Q Consensus 10 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~~~-l~p~-~~ 87 (194)
||+|.++-.+|...+|||+.+... +...++.|++|.++-||.-+.+|.-|...|.+.+.-.. |.++ ..
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~----------~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a 130 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCS----------LKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAEQRA 130 (281)
T ss_pred ChHHHHHHHHHHHhCCCceecccc----------ceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999999999999988554 22467799999999999999999999999998886433 3333 22
Q ss_pred HHHHHHHH--------------------------------------HHH-HHhhCCc-----------hHHHHHHHHHHH
Q 029352 88 KRKAINYQ--------------------------------------KYI-EEKAGAD-----------ERDIWAKTHIGK 117 (194)
Q Consensus 88 ~~~~~~~~--------------------------------------~~~-~~~~~~~-----------~~~~~~~~~~~~ 117 (194)
..+|...+ .++ ...++.. =..++..+-+.+
T Consensus 131 ~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~r 210 (281)
T KOG4244|consen 131 QSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHR 210 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHH
Confidence 22332222 111 1111100 012335556788
Q ss_pred HHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-----CCCchhHHHHHHHHhc
Q 029352 118 GFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-----MTQFPLLLRLHEAYSK 176 (194)
Q Consensus 118 ~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-----~~~~p~l~~~~~~~~~ 176 (194)
-|..++..|++ ++||.|+++|-+|+.+|+.|.......+.. -+.+|+|..|++|+.+
T Consensus 211 Dlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 211 DLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHHHHHHHhCC--CccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 88899999998 999999999999999999999974322222 2779999999999985
No 60
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.59 E-value=6.3e-15 Score=89.26 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.1
Q ss_pred eeecccC-------CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~-------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
++||.+. .||+|++++++|+++||+|+.+.++.. ..+|.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3567666 799999999999999999999988732 27899999999999999999999999998
Q ss_pred hh
Q 029352 75 EK 76 (194)
Q Consensus 75 ~~ 76 (194)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 64
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.58 E-value=2.6e-14 Score=94.43 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc--CCCCCCchhHHHHHHHHhcChhhhhhC
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF--NLDMTQFPLLLRLHEAYSKLPAFQNAA 184 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~~~~~~ 184 (194)
..+...+++.+.+..+|++|++ ++|++|+++|+||+++++.+.++.... +..++.+|+|.+|++++.++|++++++
T Consensus 38 ~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 38 SEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred cHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 3667788999999999999998 799999999999999999887762211 233589999999999999999999863
No 62
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.57 E-value=2.6e-14 Score=95.33 Aligned_cols=78 Identities=50% Similarity=0.885 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCC
Q 029352 109 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 109 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 187 (194)
+...+.+.+.|..+|++|++++++|++|+++|+||+++++.+.+. ...+.+++.+|+|++|++++.++|+++++.+..
T Consensus 43 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 43 AWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNA-RRFGVDLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHH-HHhCCCcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 445567899999999999853368999999999999999999887 556776789999999999999999999988754
No 63
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-14 Score=104.18 Aligned_cols=181 Identities=22% Similarity=0.208 Sum_probs=128.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCc----ceEEEcccCCCCCCchhhh------------------------------hc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFL------------------------------KI 47 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~~------------------------------~~ 47 (194)
+.||..-.||+++|..+.++.+|++ +..+.--.. +....|. ..
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d---~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~ 114 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLD---DKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIA 114 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccC---CCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhc
Confidence 5689999999999999999999984 222221000 1111111 11
Q ss_pred CCC----CCcceEEeC---CEEeecHHHHHHHHHh---------hCCCCCCCCCcHHHHHHHHH----------HHHHHh
Q 029352 48 NPI----GYVPALVDG---DFVVSDSFAILMYLEE---------KYPQPPLLPSDLKRKAINYQ----------KYIEEK 101 (194)
Q Consensus 48 ~p~----~~vP~l~~~---~~~l~es~~I~~yL~~---------~~~~~~l~p~~~~~~~~~~~----------~~~~~~ 101 (194)
+|. .+||||.|- ..+-.||..|++.+.. .++.-+|+|..........+ .+....
T Consensus 115 ~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 115 SPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeecc
Confidence 222 379999964 3667899999999983 33335677776644444333 233344
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC--------CCCchhHHHHHHH
Q 029352 102 AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD--------MTQFPLLLRLHEA 173 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~--------~~~~p~l~~~~~~ 173 (194)
...++.-+...+.+-+.|+.+|++|+++.+.|++|+++|.||+-|++.+.++...+... .++||+|..|..+
T Consensus 195 A~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~ 274 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKN 274 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHH
Confidence 44567778888899999999999999965669999999999999999998875444321 3699999999999
Q ss_pred Hhc-ChhhhhhCC
Q 029352 174 YSK-LPAFQNAAP 185 (194)
Q Consensus 174 ~~~-~p~~~~~~~ 185 (194)
+.+ .|+++.+..
T Consensus 275 iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 275 IYWNIPGFSSTTD 287 (319)
T ss_pred HHhhccchhhccc
Confidence 998 888887654
No 64
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.56 E-value=3.2e-14 Score=95.52 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc--------------cCCCcccCCCCcHHHHhhHHHHHHHHHh----cCCCC-CCchh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKD--------------YAGKYATGDEVFLADLYLAPQLYAAVNR----FNLDM-TQFPL 166 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~s~aD~~l~~~l~~~~~~----~~~~~-~~~p~ 166 (194)
+..+...+.+...|..||++|++ .+++|++|+++|+||+.+++.+.++... .+..+ +.+|+
T Consensus 25 ~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~ 104 (134)
T cd03198 25 ALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTG 104 (134)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHH
Confidence 45677888999999999999986 3478999999999999999999876211 25554 88999
Q ss_pred HHHHHHHHhcChhhhhhCCCC
Q 029352 167 LLRLHEAYSKLPAFQNAAPEK 187 (194)
Q Consensus 167 l~~~~~~~~~~p~~~~~~~~~ 187 (194)
|.+|++++.+||+|+++++..
T Consensus 105 L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 105 LWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred HHHHHHHHHCCHHHHHHcCCH
Confidence 999999999999999998764
No 65
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.56 E-value=2.9e-14 Score=95.83 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
..+...+.+.+.|..||+.|+.+ +++|++|+++|+||+++++.+.++....+..++.+|+|.+|++++.++|++++++.
T Consensus 32 ~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~ 111 (126)
T cd03210 32 GKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAPGCLDAFPLLKAFVERLSARPKLKAYLE 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhChHhhhcChHHHHHHHHHHhCcHHHHHHh
Confidence 34566677999999999999864 47999999999999999999988732223346899999999999999999999998
Q ss_pred CCCC
Q 029352 186 EKQP 189 (194)
Q Consensus 186 ~~~~ 189 (194)
....
T Consensus 112 ~~~~ 115 (126)
T cd03210 112 SDAF 115 (126)
T ss_pred CcCC
Confidence 7654
No 66
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.56 E-value=3.7e-14 Score=96.55 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCCCCCC
Q 029352 111 AKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPEKQPD 190 (194)
Q Consensus 111 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 190 (194)
..+.+.+.|..||+.|.+++++|++|+++|+||+++++.+.++.......++.+|+|.+|++++.++|++++++......
T Consensus 40 ~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~ 119 (137)
T cd03208 40 KEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQPGSPR 119 (137)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhchhhhccChHHHHHHHHHHcCHHHHHHHhcCCCC
Confidence 33457899999999998545899999999999999999999873223334689999999999999999999999876543
No 67
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.56 E-value=2.2e-14 Score=94.50 Aligned_cols=75 Identities=29% Similarity=0.352 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhC
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAA 184 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 184 (194)
..+...+++.+.++.+|+.|++ ++|++|+++|+|||++++.+.++ ...+.+++++|+|.+|++++.++|++++++
T Consensus 40 ~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 40 VKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFVVLRWA-PGVGLDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHHHHHHH-hhcCCChhhChHHHHHHHHHHhCHHhHhhC
Confidence 3556778899999999999986 89999999999999999999887 555666778999999999999999999864
No 68
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.55 E-value=5.5e-14 Score=93.78 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcC-CCCCCchhHHHHHHHHhcChhhhhhC
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFN-LDMTQFPLLLRLHEAYSKLPAFQNAA 184 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~-~~~~~~p~l~~~~~~~~~~p~~~~~~ 184 (194)
...+...+.+.+.+..||++|++ ++|++|+++|+||+++++.+.++ ...+ ..++.+|+|.+|++++.++|++++++
T Consensus 31 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~~~~-~~~~~~~~~~~P~l~~~~~rv~~~p~vk~~~ 107 (121)
T cd03209 31 KLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEALDQH-RIFEPDCLDAFPNLKDFLERFEALPKISAYM 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHHHHH-HHhCccccccChHHHHHHHHHHHCHHHHHHH
Confidence 34556677899999999999987 78999999999999999999988 4433 33688999999999999999999999
Q ss_pred CCCCCC
Q 029352 185 PEKQPD 190 (194)
Q Consensus 185 ~~~~~~ 190 (194)
+.++..
T Consensus 108 ~~~~~~ 113 (121)
T cd03209 108 KSDRFI 113 (121)
T ss_pred hcccCc
Confidence 887543
No 69
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.54 E-value=6.8e-14 Score=89.25 Aligned_cols=70 Identities=33% Similarity=0.431 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-C-CCchhHHHHHHHHhcCh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-M-TQFPLLLRLHEAYSKLP 178 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-~-~~~p~l~~~~~~~~~~p 178 (194)
+..+.....+.+.|..+|+.|++ ++|++|+++|+||+++++.+.++ ...+.. . +++|+|++|++++.+||
T Consensus 24 ~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 24 EMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWL-ERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHH-HHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHH-HHhCCCcccccCHHHHHHHHHHHcCC
Confidence 45777888899999999999996 99999999999999999999999 555555 4 89999999999999997
No 70
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.5e-13 Score=93.68 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=120.4
Q ss_pred CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhCCC-CCCCCCcH
Q 029352 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-PPLLPSDL 87 (194)
Q Consensus 9 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~~~-~~l~p~~~ 87 (194)
....|..|...|.++++||.++..+ +.+| ++|.|+||.|..+.+.+.|-..|..+...+.-. .+.. +.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l--sE 101 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL--SE 101 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh--hh
Confidence 4678999999999999999988665 4454 689999999999999999999999999876421 2222 22
Q ss_pred HHHHHHHH-----------------------------------------------------HHHHHhhCCchHHHHHHHH
Q 029352 88 KRKAINYQ-----------------------------------------------------KYIEEKAGADERDIWAKTH 114 (194)
Q Consensus 88 ~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~ 114 (194)
.+++.+.. ..+..........+.+.++
T Consensus 102 ~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~ 181 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQ 181 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 33333332 1122223344568889999
Q ss_pred HHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-------CCCchhHHHHHHHHhcC
Q 029352 115 IGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSKL 177 (194)
Q Consensus 115 ~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-------~~~~p~l~~~~~~~~~~ 177 (194)
+..+...|...|+. .+||.|+++|-+|..+|+.++.+ .....+ +..|++|-++++|+.++
T Consensus 182 vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlyti-lTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 182 VDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTI-LTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHh-hhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999998 444332 47899999999999863
No 71
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.52 E-value=8.6e-14 Score=90.17 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCC
Q 029352 108 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPE 186 (194)
Q Consensus 108 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 186 (194)
.+....++.+.++.||++|++ ++|++|+++|+||+++++.+.+. ...+. ++.+|+|++|++++.++|+++++...
T Consensus 28 ~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~aDi~~~~~~~~~-~~~~~-~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 28 RMAGFGSYDDVLAALEQALAK--GPYLLGERFTAADVLVGSPLGWG-LQFGL-LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHHHHHHHHHHHHH-HHcCC-CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 455667899999999999997 79999999999999999999998 45443 57899999999999999999998764
No 72
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.52 E-value=1.3e-13 Score=89.93 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCC-CCchhHHHHHHHHhcChhhhhh
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAFQNA 183 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~ 183 (194)
++..+...+.+.+.|..+|+.|+. ++|++|+++|+||+++++.+.++ ...|.++ +.+|++++|++++.+||+++++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 30 KKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPLLWRL-PALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHHHHHH-HHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 344566788899999999999987 89999999999999999998665 5566544 6799999999999999999875
No 73
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.52 E-value=6.5e-14 Score=93.84 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcC------CCCCCchhHHHHHHHHhcCh
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFN------LDMTQFPLLLRLHEAYSKLP 178 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~------~~~~~~p~l~~~~~~~~~~p 178 (194)
++..+...+.+.+.|+.+|+.|++.+++|++|+++|+||+++++.+.++ ...+ ..++.+|+|++|+++|.++|
T Consensus 27 ~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~-~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p 105 (124)
T cd03184 27 PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERL-EALKLLLGYEFPLDRFPKLKKWMDAMKEDP 105 (124)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHH-HHHHhhccccCCcccChHHHHHHHHhccCh
Confidence 3445678889999999999999865579999999999999999999876 3332 34688999999999999999
Q ss_pred hhhhhCCCCC
Q 029352 179 AFQNAAPEKQ 188 (194)
Q Consensus 179 ~~~~~~~~~~ 188 (194)
++++++.+..
T Consensus 106 ~v~~~~~~~~ 115 (124)
T cd03184 106 AVQAFYTDTE 115 (124)
T ss_pred HHHHHhCCHH
Confidence 9999987653
No 74
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.50 E-value=4.6e-13 Score=88.97 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCh
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLP 178 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p 178 (194)
..+....++.+.|+.||++|++ ++|++|+++|+||+++++.+.++ ...+...+.+|+|.+|+++++++|
T Consensus 51 ~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd~~t~ADi~l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 51 LAGFINPELKKHLDFLEDRLAK--KGYFVGDKLTAADIMMSFPLEAA-LARGPLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHHHHhHHHHHHHHHHHHHHcc--CCCCCCCCCCHHHHHHHHHHHHH-HHcCcccccCchHHHHHHHHhcCC
Confidence 3455667899999999999988 89999999999999999999887 555556788999999999999986
No 75
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.49 E-value=1.1e-13 Score=91.74 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcC--CCCCCchhHHHHHHHHhcChhhhhh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFN--LDMTQFPLLLRLHEAYSKLPAFQNA 183 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~~~~ 183 (194)
...+...+.+.+.++.||++|++ ++|++|+++|+||+++++++.++ ...+ ..++.+|+|++|++++.++|+++++
T Consensus 41 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 41 AVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSHLPYLQYL-MATPFAKLFDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHHHHHHHHH-HHccchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence 34556778899999999999987 89999999999999999999887 3222 2357899999999999999999986
Q ss_pred C
Q 029352 184 A 184 (194)
Q Consensus 184 ~ 184 (194)
+
T Consensus 118 ~ 118 (118)
T cd03187 118 L 118 (118)
T ss_pred C
Confidence 4
No 76
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.49 E-value=6.7e-14 Score=92.95 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
...+...+++.+.+..||++|++ ++|++|+++|+||+++++++.++....+.+...+|+|.+|++++.++|++++...
T Consensus 34 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 111 (118)
T cd03177 34 EPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATVSTLEALLPLDLSKYPNVRAWLERLKALPPYEEANG 111 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHHHHHHHhcCCChhhCchHHHHHHHHHcccchHHHHH
Confidence 34566778899999999999987 7899999999999999999999832256667789999999999999999998664
Q ss_pred CC
Q 029352 186 EK 187 (194)
Q Consensus 186 ~~ 187 (194)
..
T Consensus 112 ~~ 113 (118)
T cd03177 112 KG 113 (118)
T ss_pred HH
Confidence 43
No 77
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.49 E-value=4.8e-13 Score=89.75 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHH---hcCC---CCCCchhHHHHHHHHhcChh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN---RFNL---DMTQFPLLLRLHEAYSKLPA 179 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~---~~~~---~~~~~p~l~~~~~~~~~~p~ 179 (194)
+..+.....+.+.++.||+.|+. ++|++|+++|+||+++++.+.++.. ..+. +.+.+|++.+|+++++++|+
T Consensus 31 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 108 (126)
T cd03185 31 EEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccH
Confidence 44566778899999999999987 7999999999999999999988621 1132 24779999999999999999
Q ss_pred hhhhCCCC
Q 029352 180 FQNAAPEK 187 (194)
Q Consensus 180 ~~~~~~~~ 187 (194)
++++++..
T Consensus 109 ~~~~~~~~ 116 (126)
T cd03185 109 VKEVLPDR 116 (126)
T ss_pred HHHhCCCH
Confidence 99998764
No 78
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.48 E-value=1.5e-13 Score=90.44 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-CCCchhHHHHHHHHhcChhhhhhC
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-MTQFPLLLRLHEAYSKLPAFQNAA 184 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 184 (194)
...+....++.+.++.+|+.|++ ++|++|+++|+||+++++.+.+. ...+.. .+.+|++.+|++++.++|++++++
T Consensus 36 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 36 YAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPWVRRL-EWIGIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHHHHHH-HhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 34667788899999999999987 89999999999999999999988 555555 678999999999999999999875
No 79
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.47 E-value=3.6e-13 Score=87.70 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccC--------CCcccCCCCcHHHHhhHHHHHHHHHhcCCCC-----CCchhHHHHHH
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYA--------GKYATGDEVFLADLYLAPQLYAAVNRFNLDM-----TQFPLLLRLHE 172 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~-----~~~p~l~~~~~ 172 (194)
+..+....++.+.|+.||++|.++. ++|++|+++|+||+++++.+.++ ...+.+. ..+|+|.+|++
T Consensus 25 ~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~-~~~~~~~~~~~~~~~P~l~~w~~ 103 (111)
T cd03204 25 EYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRL-KFLGLSRRYWGNGKRPNLEAYFE 103 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHH-HHcCccccccccccChHHHHHHH
Confidence 4567888999999999999998631 26999999999999999999998 5555543 57999999999
Q ss_pred HHhcChhh
Q 029352 173 AYSKLPAF 180 (194)
Q Consensus 173 ~~~~~p~~ 180 (194)
++.+||+|
T Consensus 104 rv~aRpsf 111 (111)
T cd03204 104 RVLQRESF 111 (111)
T ss_pred HHHcCCCC
Confidence 99999975
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=3.7e-13 Score=88.07 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhh
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 180 (194)
..+...+++.+.|+.+|++|++ ++|++|+++|+||+++++++... ...+...+.+|+|.+|++++.++|++
T Consensus 40 ~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 40 AIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGCSAYRW-FELPIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHHHHHHH-HHcccccccCchHHHHHHHHHhCCCC
Confidence 3566778899999999999997 89999999999999999998655 34455578999999999999999975
No 81
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.46 E-value=6.4e-13 Score=88.48 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc----CCC-CCCchhHHHHHHHHhcChhhhhh
Q 029352 109 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF----NLD-MTQFPLLLRLHEAYSKLPAFQNA 183 (194)
Q Consensus 109 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~----~~~-~~~~p~l~~~~~~~~~~p~~~~~ 183 (194)
+...+.+.+.|..||+.|++. ++|++|+++|+||+++++++.++.... +.. .+.+|+|.+|++++.+||+|+++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t 107 (121)
T cd03201 29 DGTEQALLDELEALEDHLKEN-GPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKT 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhc
Confidence 556678999999999999852 699999999999999999877762211 333 37899999999999999999998
Q ss_pred CCCC
Q 029352 184 APEK 187 (194)
Q Consensus 184 ~~~~ 187 (194)
++..
T Consensus 108 ~~~~ 111 (121)
T cd03201 108 KAEK 111 (121)
T ss_pred CCCH
Confidence 8764
No 82
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.45 E-value=1.1e-12 Score=89.91 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHh----c--C-CCCCCchhHHHHHHHHhcC
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR----F--N-LDMTQFPLLLRLHEAYSKL 177 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~----~--~-~~~~~~p~l~~~~~~~~~~ 177 (194)
++..+.....+.+.|+.||+.|++ ++|++|+++|+||+++++.+.++... . + ..++.+|+|.+|++++.++
T Consensus 32 ~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~ 109 (142)
T cd03190 32 QEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQN 109 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcC
Confidence 345667788999999999999987 89999999999999999998776211 1 1 1246899999999999999
Q ss_pred hhhhhhCCC
Q 029352 178 PAFQNAAPE 186 (194)
Q Consensus 178 p~~~~~~~~ 186 (194)
|++++++..
T Consensus 110 P~~k~~~~~ 118 (142)
T cd03190 110 PGVAETTNF 118 (142)
T ss_pred chHhhhcCH
Confidence 999998765
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.44 E-value=1.5e-12 Score=83.09 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=72.1
Q ss_pred HHHHHhhCCCCCCCCCcHHHHHHHHH--HHHH-HhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhh
Q 029352 70 LMYLEEKYPQPPLLPSDLKRKAINYQ--KYIE-EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 146 (194)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l 146 (194)
++||++.. .++|.+..+.+++++ .+.. .... ...+++.+.+..+|++|+. ++|++|+++|+|||++
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~------~~~~~~~~~l~~le~~L~~--~~fl~Gd~~tiADi~l 69 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE------GSSKEKAAVLRALNSALGR--SPWLVGSEFTVADIVS 69 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHcC--CCccCCCCCCHHHHHH
Confidence 47898883 489999999998887 2222 2211 2335677899999999998 8999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 029352 147 APQLYAAVNRFNLDMTQFPLLLRLHEAYSKL 177 (194)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~ 177 (194)
++.+.+. +...+.+|+|.+|++++.++
T Consensus 70 ~~~l~~~----~~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 70 WCALLQT----GLASAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHc----ccccccChHHHHHHHHHHhC
Confidence 9987653 34457899999999999763
No 84
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=6.1e-13 Score=85.72 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhh
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 180 (194)
..+....++.+.+..+|+.|++ ++|++|+++|+||+++++.+.+. ...+..++.+|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALA-PEGGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHH-hccCCChhhCcHHHHHHHHHHhCcCC
Confidence 3456778899999999999998 78999999999999999998765 44455568899999999999999975
No 85
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.43 E-value=1.1e-12 Score=87.32 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhc-cCCCcccCCCCcHHHHhhHHHHHHHHH----hcCCCC-CCchhHHHHHHHHhcChhhhhhCCC
Q 029352 113 THIGKGFAALEKLLKD-YAGKYATGDEVFLADLYLAPQLYAAVN----RFNLDM-TQFPLLLRLHEAYSKLPAFQNAAPE 186 (194)
Q Consensus 113 ~~~~~~l~~le~~L~~-~~~~~l~G~~~s~aD~~l~~~l~~~~~----~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~~~ 186 (194)
+.+.+.++.||+.|+. .+++|++| ++|+||+++++.+.++.. ..+.++ +.+|+|.+|++++.++|+++++.++
T Consensus 33 ~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 33 AEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 4567788899999974 23799999 999999999999976521 245554 6899999999999999999999886
Q ss_pred C
Q 029352 187 K 187 (194)
Q Consensus 187 ~ 187 (194)
.
T Consensus 112 ~ 112 (120)
T cd03203 112 P 112 (120)
T ss_pred H
Confidence 4
No 86
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.42 E-value=8.4e-13 Score=88.64 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-CCCchhHHHHHHHHhc--Chhhh
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-MTQFPLLLRLHEAYSK--LPAFQ 181 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-~~~~p~l~~~~~~~~~--~p~~~ 181 (194)
++..+...+.+.+.++.+|++|.+ +++|++|+++|+||+++++.+.+. ...+.+ ++.+|+|.+|++++.+ ||+++
T Consensus 40 ~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~ 117 (126)
T cd03183 40 PEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSAVCEIMQP-EAAGYDVFEGRPKLAAWRKRVKEAGNPLFD 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHHHHHHHHH-HhcCCcccccCchHHHHHHHHHHhcchhHH
Confidence 345667778899999999998533 278999999999999999988777 556665 5889999999999999 99999
Q ss_pred hhCC
Q 029352 182 NAAP 185 (194)
Q Consensus 182 ~~~~ 185 (194)
++.+
T Consensus 118 ~~~~ 121 (126)
T cd03183 118 EAHK 121 (126)
T ss_pred HHHH
Confidence 8653
No 87
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.41 E-value=1.3e-12 Score=86.58 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCC-CCchhHHHHHHHHhcChhh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~ 180 (194)
+..+....++.+.|+.||+.|+. ++|++|+++|+||+++++.+.++ ...+.++ ..+|+|.+|++++.++|++
T Consensus 45 ~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~aDi~l~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 45 EWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTIADITAFVGLDFA-KVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCHHHHHHHHHhHHH-HhcCCCCccccHHHHHHHHHHHhccCC
Confidence 44677888899999999999987 78999999999999999999988 5666665 6899999999999999974
No 88
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.41 E-value=1.5e-12 Score=87.03 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC---CCCchhHHHHHHHHhcChhhhh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEAYSKLPAFQN 182 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~---~~~~p~l~~~~~~~~~~p~~~~ 182 (194)
...+...+++.+.|+.+|+.|+. ++|++|+++|+||+++++.+.++ ...+.+ ++.+|++.+|++++.++|++++
T Consensus 36 ~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 112 (123)
T cd03181 36 KSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGALLLG-FTYVFDKEWRAKYPNVTRWFNTVVNQPIFKA 112 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHHHHH-HHHHcCHHHHHhChHHHHHHHHHHcCHHHHH
Confidence 44667788899999999999997 79999999999999999999887 333332 3679999999999999999999
Q ss_pred hCCCCC
Q 029352 183 AAPEKQ 188 (194)
Q Consensus 183 ~~~~~~ 188 (194)
++.+.+
T Consensus 113 ~~~~~~ 118 (123)
T cd03181 113 VFGEVK 118 (123)
T ss_pred HcCCCC
Confidence 988765
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.41 E-value=2.1e-12 Score=77.43 Aligned_cols=65 Identities=31% Similarity=0.399 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC---CCCchhHHHHHHH
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEA 173 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~---~~~~p~l~~~~~~ 173 (194)
+..+...+++.+.|+.||++|+. ++|++|+++|+||+++++.+.++ ...+.+ .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~-~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLADIALAPFLWRL-RFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HHHHHHHHHHHHH-HHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHHHHHHHHHHHHH-HHhCcCcCccccCHHHHHHHhC
Confidence 35678889999999999999999 77999999999999999999999 555543 4899999999986
No 90
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.41 E-value=2.1e-12 Score=85.22 Aligned_cols=75 Identities=21% Similarity=0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCCC
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAPE 186 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 186 (194)
..+...+.+.+.+..+|..|.. +++|++| ++|+||+++++.+.++ ...|.++. |++.+|.+++.+||+|++.++.
T Consensus 39 ~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~~~~~~~-~~~g~~l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 39 LSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLALMLNRL-VLNGDPVP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 3466778889999999999974 3589999 5999999999999999 88888875 9999999999999999998753
No 91
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.41 E-value=2e-12 Score=85.23 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 108 DIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 108 ~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
.+...+.+.+.+..+|..|+.. +++|++|+ +|+||+++++++.+. ...+.+.. |+|.+|++++.++|++++.+.
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~-~~~~~~~~--P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRF-RTYGLPLS--PAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 4566667788888888887643 47899999 999999999999988 55565543 999999999999999998764
No 92
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.39 E-value=1.7e-12 Score=78.03 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
..+++|.+++++|.++|++|+.+... . .+ ..+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 56889999999999999999988322 1 11 2567899999999999999999999999763
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.33 E-value=5.7e-12 Score=81.01 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCC-CCchhHHHHHHHHhc
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSK 176 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~ 176 (194)
...+...+++.+.+..+|++|+.++++||+|+++|+||+++++.|..+ . .+ .+ +.+|+|.+|++||.+
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~-~-~~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASL-R-WA-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHH-H-CC-HHTTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHH-h-hc-ccccccHHHHHHHHhhcC
Confidence 456778889999999999999996555999999999999999999776 3 33 34 599999999999974
No 94
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.28 E-value=2.3e-11 Score=81.40 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-CCCchhHHHHHHHHhcC
Q 029352 108 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-MTQFPLLLRLHEAYSKL 177 (194)
Q Consensus 108 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-~~~~p~l~~~~~~~~~~ 177 (194)
.+...+.+.+.|+.+|++|++ ++|+.|+++|+||+++++.+.+.....+.+ ++.+|+|.+|++++.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 567778899999999999998 899999999999999999999983323555 48899999999999763
No 95
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.24 E-value=3e-11 Score=78.32 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYS 175 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~ 175 (194)
+..+...+++.+.++.||..|++ ++|++|+++|+||+++++.+.++ ...+.+...+|+|.+|+++++
T Consensus 39 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 39 EVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAAYTHVA-DEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHHHHHhc-cccCCChHhCccHHHHHHhhC
Confidence 44567788899999999999977 78999999999999999999988 556666788999999999874
No 96
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.20 E-value=8.3e-11 Score=72.34 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=60.9
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
.++||+.++||+|.+++.+|...||+|+.+.++-. ....++...+...++|++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 37899999999999999999999999999888632 223456666778899999999999999999999984
No 97
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.18 E-value=1.2e-10 Score=73.14 Aligned_cols=64 Identities=23% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCC-------CCCCchhHHHHHHHHh
Q 029352 109 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNL-------DMTQFPLLLRLHEAYS 175 (194)
Q Consensus 109 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~-------~~~~~p~l~~~~~~~~ 175 (194)
....+++.+.++.+|+.|++ ++|++|+++|+||+++++.+.++ ...+. .++.+|+|++|++++.
T Consensus 18 ~~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~-~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASI-LYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHH-HhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 36677899999999999998 89999999999999999999887 33221 2467999999999873
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.16 E-value=1.6e-10 Score=73.95 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC---CCCchhHHHHHHHH
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEAY 174 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~---~~~~p~l~~~~~~~ 174 (194)
.+..+...+.+.+.++.||+.|+. ++|++|+++|+||+++++.+.++ ...+.. .+.+|++.+|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~aDi~~~~~l~~~-~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 31 EAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLADIALAPVLARL-DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHHHHHHHHHHHHH-HHhhhhhhhhccCccHHHHHHhC
Confidence 345677788899999999999987 79999999999999999999998 455554 58899999999875
No 99
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.15 E-value=1.6e-10 Score=74.84 Aligned_cols=68 Identities=29% Similarity=0.375 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCC-C-CCCchhHHHHHHHH
Q 029352 106 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNL-D-MTQFPLLLRLHEAY 174 (194)
Q Consensus 106 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~-~-~~~~p~l~~~~~~~ 174 (194)
.......+.+.+.+..||+.|...+++|++|+++|+||+++++.+.++ ...+. . ...+|+|.+|++++
T Consensus 35 ~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 35 KKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYL-LYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHH-HhhCchhhHHhChhHHHHHHhC
Confidence 446667788999999999999754468999999999999999999998 44443 3 67899999999875
No 100
>PRK10638 glutaredoxin 3; Provisional
Probab=99.12 E-value=2.7e-10 Score=70.74 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=60.7
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL 73 (194)
+++|+...||+|.+++.+|...|++|+.+.++... ...+++.+.++..++|++..||..+.+...+..+-
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHH
Confidence 79999999999999999999999999999887432 23466778899999999999999999998887763
No 101
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-08 Score=75.10 Aligned_cols=154 Identities=22% Similarity=0.183 Sum_probs=108.6
Q ss_pred CchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE-eCCEEeecHHHHHHHHHhhCCCCCCCCCc-H
Q 029352 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPPLLPSD-L 87 (194)
Q Consensus 10 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~~I~~yL~~~~~~~~l~p~~-~ 87 (194)
++-|.++.++++.++-|..+.... . -..+|.|++|+|+ ++|+++.+-..|..+|.....+..+-+.. .
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ss-------N---~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSS-------N---PWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeec-------C---CCCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 778999999999999665555443 1 1246789999999 67899999999999998843222233331 3
Q ss_pred HHHHHHHH-----------------------------H------------------------HHHHhhCCc-hHHHHHHH
Q 029352 88 KRKAINYQ-----------------------------K------------------------YIEEKAGAD-ERDIWAKT 113 (194)
Q Consensus 88 ~~~~~~~~-----------------------------~------------------------~~~~~~~~~-~~~~~~~~ 113 (194)
.+.+.... . .+.-..+.. +..+....
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 33333332 0 000111111 23555666
Q ss_pred HHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-------CCCchhHHHHHHHHhc
Q 029352 114 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSK 176 (194)
Q Consensus 114 ~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-------~~~~p~l~~~~~~~~~ 176 (194)
...+++..+...|++ +.|++|+++|--|..++..+..+ .....+ +..+++|.++.+++..
T Consensus 167 ~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~-~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAIL-LQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHH-HhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 788889999999999 99999999999999999999996 444432 3558999999999886
No 102
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.08 E-value=8.4e-10 Score=66.60 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
+++||+..+||+|.+++.+|...|++|+.+.++... ....+.......++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999999887332 12344455667799999999999999999999974
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.07 E-value=7.5e-10 Score=66.83 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 10 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
+|+|.++.+.|..+|++|+.+... + ...+|.|++|+|+++|+.+.+|..|++||.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~~-------n---~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPSN-------N---PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecC-------C---CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 799999999999999999887443 1 13568999999999999999999999999864
No 104
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.96 E-value=2.8e-09 Score=72.46 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-------CCCchhHHHHHHHHhc
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSK 176 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-------~~~~p~l~~~~~~~~~ 176 (194)
..+...+...+.+..|++.|++ ++|++|+++|.+|+.+++++..+ ...+.+ +.++|+|.+|++||.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~-~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPL-LKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHH-HhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 4677778899999999999998 89999999999999999999887 333332 5789999999999975
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.94 E-value=2.1e-09 Score=72.05 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHh-c---CCC--CCCchhHHHHHHHHh
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-F---NLD--MTQFPLLLRLHEAYS 175 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~-~---~~~--~~~~p~l~~~~~~~~ 175 (194)
..+...+...+.|..|+..|++ ++||+|+++|.+|+++++.+..+... . +.. +.++|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 4577788899999999999999 89999999999999999999888322 1 111 578999999999974
No 106
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=3.9e-09 Score=63.63 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=55.8
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEe--ecHHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYL 73 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l--~es~~I~~yL 73 (194)
|++||+..+||+|++++.+|...|++|..+.++-. .....++.+.++...+|+++.+|..+ ++...|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 79999999999999999999999999998877622 11223456778889999999888777 5556665554
No 107
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.93 E-value=3.5e-09 Score=71.93 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhc-CC-CCCCchhHHHHHHHHhc
Q 029352 110 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-NL-DMTQFPLLLRLHEAYSK 176 (194)
Q Consensus 110 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~-~~-~~~~~p~l~~~~~~~~~ 176 (194)
..++.+...++.+-+.+.. +++|+.|+++|+||+++++.+..+ ... +. ++.++|+|.+|+++|.+
T Consensus 79 D~r~~L~~a~~~w~~~~~~-~~~FlaGd~ptIADisvyg~l~s~-e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 79 DVREWLYDALNTWVAALGK-DRQFHGGSKPNLADLAVYGVLRSV-EGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred hHHHHHHHHHHHHHHHhcC-CCCccCCCCCCHHHHHHHHHHHHH-HHhccccchhhCcCHHHHHHHHHH
Confidence 3455566666555555554 278999999999999999999988 454 66 78899999999999986
No 108
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.92 E-value=6.2e-09 Score=66.67 Aligned_cols=65 Identities=25% Similarity=0.165 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHh-cCCC-CCCchhHHHHHHHH
Q 029352 105 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-FNLD-MTQFPLLLRLHEAY 174 (194)
Q Consensus 105 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~-~~~~-~~~~p~l~~~~~~~ 174 (194)
.+..+....++.+.|..+|++|++ ++| +++|+||+++++.+.+.... .+.. .+.+|+|.+|+++|
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAK--LPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 355778888999999999999987 788 89999999999999888322 2333 48899999999985
No 109
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.88 E-value=7e-09 Score=62.70 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~ 71 (194)
++||+.+.||+|.+++.+|...||+|+.+.+.... ....++.+.++..++|++..||..|.+......
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~--~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP--ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999887322 234567888899999999999998888766544
No 110
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.75 E-value=2.9e-08 Score=61.14 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=47.8
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeec
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 65 (194)
+++||+...||+|.+++.+|...||+|+.+.++-.. ....++ ..++..++|+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~--~~~~~~-~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP--EAAETL-RAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCCCcCEEEECCEEEec
Confidence 479999999999999999999999999999887321 111223 33578899999988765544
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.74 E-value=4.1e-08 Score=58.69 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+++|+...||+|++++.+|...|++|+.+.+.... ....++.+.++..++|++..||..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 57999999999999999999999999988776321 2345666778889999999999999999887653
No 112
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.73 E-value=2.7e-08 Score=59.73 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=52.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS 66 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es 66 (194)
+++|+..+||+|.+++.+|.+.|++|+.+.++.. ....+++.+.++.+++|+++.+|..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 6899999999999999999999999999888642 12345677888999999999888776654
No 113
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.2e-08 Score=59.51 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=55.9
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
++++|..+.||||.+++-+|...|++|+.+.++...+....+.....++..+||++..||..+.....+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 378999999999999999999999999999988543322223344555889999999999877765555444
No 114
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.69 E-value=3.4e-07 Score=58.81 Aligned_cols=74 Identities=24% Similarity=0.149 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 107 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 107 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
-.+.....+.+.+...+..|.. |++||+|+ .|+||..+++++.++ ..+|.++. +.+..|.++.-++|++++.+.
T Consensus 40 Ls~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA~ml~Rl-~~~gd~vP--~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 40 LSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLALMLNRL-VTYGDPVP--ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp --HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHHHHHHHH-HTTT------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHH
Confidence 3566677788888889988875 68999997 999999999999999 77787765 689999999999999998653
No 115
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.65 E-value=1.1e-07 Score=57.63 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=55.3
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCC-CcceEEeCCEEeecHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~~I~~yL 73 (194)
++||+.+.||+|.+++-+|...||+|+.+.++... ....++....... ++|++..+|..+.+...+.++-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~--~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP--ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 68999999999999999999999999999887331 1123343444444 8999999999999998888763
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.58 E-value=1.8e-07 Score=56.92 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcC-CCCCcceEE-eCCEEeecHH--HHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALV-DGDFVVSDSF--AILMYL 73 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~l~-~~~~~l~es~--~I~~yL 73 (194)
++||+..+||+|++++..|...|++|+.+.++-. ......+.+.+ +...+|+++ ++|..+.+.. .|..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 6899999999999999999999999998776522 22234555666 888999997 6777766543 344443
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.57 E-value=2.3e-07 Score=56.89 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=57.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ....++.+.+....+|++..+|..+.+...+..+-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 57999999999999999999999999999887432 123455566667899999999999988888777644
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.48 E-value=3.4e-07 Score=55.10 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCE
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 61 (194)
+++|+.+.||+|.+++-+|...||+|+.+.++-.. ....++ ......+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999999887321 112233 3346678999997654
No 119
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.47 E-value=9.6e-07 Score=54.93 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=59.6
Q ss_pred eeecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCC--CCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
+++|+.++||+|.+++-+|.. .|++|+.+.++... ...+++...... .++|++..||..+.+...|.+++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 689999999999999999999 89999999887321 112344443332 589999999999999999999988
Q ss_pred hhCC
Q 029352 75 EKYP 78 (194)
Q Consensus 75 ~~~~ 78 (194)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 7653
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.44 E-value=2.9e-07 Score=53.28 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=49.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEe
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l 63 (194)
+++|+..+||+|.+++-+|...|++|+.+.++... ....++.+.+...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998442 2244555666778999999888754
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.40 E-value=1.7e-06 Score=53.88 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=56.6
Q ss_pred eeecccCCCchhHHHHHHHHhcC-----CcceEEEcccCCCCCCchhhhhcCCC--CCcceEEeCCEEeecHHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
+++|+.++||+|.+++-+|...+ ++|+.+.+... + ....++....-. .+||++..||..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 56777666521 1 112334444332 689999999999999999999988
Q ss_pred hhC
Q 029352 75 EKY 77 (194)
Q Consensus 75 ~~~ 77 (194)
+.+
T Consensus 80 ~~~ 82 (86)
T TIGR02183 80 ENF 82 (86)
T ss_pred hcc
Confidence 765
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.38 E-value=1.7e-06 Score=53.29 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=59.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCC-CCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
+++|+...||+|.+++-+|...+++|+...++.... ......+.+.+...++|++..+|..+.+...|.++...
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 578999999999999999999999999998885432 11122344666677999999999999999999887643
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.36 E-value=1.6e-06 Score=55.51 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=55.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCC-CCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+++|+.+.||+|.+++-+|...|++|+.+.++..+.. .....+...+...++|++..+|..+.+...+...
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999999999999843210 1112344556678999999999999888777764
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.27 E-value=3.7e-06 Score=54.65 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=55.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCC---cceEEEcccCC-CCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~ 71 (194)
+++|..++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..+.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 689999999999999999999999 78888887311 11223456677777899999999999988877766
No 125
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.22 E-value=8.6e-06 Score=48.78 Aligned_cols=55 Identities=31% Similarity=0.409 Sum_probs=47.9
Q ss_pred CCchhHHHHHHHHhcCCc---ceEEEcccCCCCCCchhhhhcCCCCCcceEEe-CCEEeecHHHHHHHH
Q 029352 9 RSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (194)
Q Consensus 9 ~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~~I~~yL 73 (194)
.++.|.++.+.|+..+.+ |+++... +. ..+|.|++|+|++ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 488999999999999999 7777664 11 3689999999998 999999999999997
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.12 E-value=1.2e-05 Score=49.58 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=56.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCc--ceEEEcccCCCC-CCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~--~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
+++|+.++||+|.+++-+|...+++ |+...++..... .....+.+.....++|++..+|..+.++..+.++...
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 888888743211 1112244556667899999999999999888887543
No 127
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.02 E-value=2.6e-05 Score=49.67 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+.||||.+++-+|...||+|+.+.+.-. .....++...+...++|.+..||..+.+...+...
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHH
Confidence 7899999999999999999998877521 12233455566677999999999988888777764
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.94 E-value=4.6e-05 Score=47.84 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=50.6
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+.||+|.+++-+|...|++|+.+.+... .....++.+.+...++|++..||..+.+...+...
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 5899999999999999999999988632 12234455666677999999999999888887774
No 129
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.82 E-value=5.8e-05 Score=50.55 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhh
Q 029352 108 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 108 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 180 (194)
.....++++..|..+|..+.. ....-| ++|+.|+.+|+.|+.+...-|..+. |++.+|+++|++.-.+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~--~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P--~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLAS--PNAVNG-ELSIDDIILFPILRSLTIVKGIQWP--PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC--TTBTTS-S--HHHHHHHHHHHHHCTCTTS-----HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhcc--ccccCC-CCCHHHHHHHHHHhhhhhccCCcCC--HHHHHHHHHHHHHcCC
Confidence 567778888888899998886 444444 8999999999999998444455444 8999999999986554
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.76 E-value=9.4e-05 Score=50.66 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=54.3
Q ss_pred eeecccC------CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCC----CCCcceEEeCCEEeecHHHHHH
Q 029352 2 LKLFSYW------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~L~~~~------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~l~~~~~~l~es~~I~~ 71 (194)
++||..+ ++|+|.+++.+|...||+|+++.+++.. ...+++.+... ..++|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5788888 7999999999999999999999887532 22345555433 3689999999999988877776
Q ss_pred H
Q 029352 72 Y 72 (194)
Q Consensus 72 y 72 (194)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 131
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.71 E-value=0.0002 Score=47.61 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhh
Q 029352 108 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 180 (194)
Q Consensus 108 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 180 (194)
.....+++...|..++..+.. ... ++..+|+.|+.+|+.|+.+....|..+. |++.+|+++|++...|
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~--~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P--~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 58 TPQYIAALNALLEELDPLILS--SEA-VNGQLSTDDIILFPILRNLTLVKGLVFP--PKVKAYLERMSALTKV 125 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcC--ccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCC--HHHHHHHHHHHHHhCC
Confidence 456777788888888888854 233 4567999999999999998555566555 7899999999986554
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.47 E-value=0.00045 Score=55.51 Aligned_cols=67 Identities=9% Similarity=0.170 Sum_probs=52.4
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhh-h--------cCCCCCcceEEeCCEEeecHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL-K--------INPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~--------~~p~~~vP~l~~~~~~l~es~~I~~ 71 (194)
+++|+.++||+|.++.-+|...||+|+.+.++-. ....++. . .+...+||++..||..+.+-..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~---~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD---VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC---hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 7899999999999999999999999999988721 1111221 1 2356689999999999988877765
No 133
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.36 E-value=0.00025 Score=47.81 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|++|.+++-+|...||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 899999999999999999999999999999875
No 134
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.35 E-value=0.00026 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=31.5
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|+.|.+++-+|...||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 899999999999999999999999999999875
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.34 E-value=0.00091 Score=39.24 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=41.1
Q ss_pred CeeecccCCCchhHHHHHHHHhc-----CCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEee
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 64 (194)
.+++|+.++||+|.+++-.|... +++|..+.++ ...++........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 36899999999999999998865 5666666554 1233444444557999998886654
No 136
>PRK10824 glutaredoxin-4; Provisional
Probab=97.21 E-value=0.0017 Score=42.61 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=50.3
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+.||||.++.-+|...|++|..+.+.-. ......+...+-..+||-+..+|.-|.+...+...
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 4799999999999999999998877632 12234555667778999999999999888777764
No 137
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.18 E-value=0.00052 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=31.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|+.|++++-+|...||+|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 899999999999999999999999999999886
No 138
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.10 E-value=0.0007 Score=45.57 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|+.|++++-+|...||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 899999999999999999999999999999876
No 139
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0033 Score=40.42 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=54.2
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcccCC-CCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
.+|.-..||+|.+++-+|...|+++..++++-.. +..-...+.+..-..++|.+..+|+-+-+...+..+
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 4666778999999999999999999999998543 212222333445566999999999999998888876
No 140
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.00028 Score=57.12 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=74.4
Q ss_pred eCCEEeecHHHHHHHHHhhCC-CCCCCCCcHHHHHHHHH--HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 029352 58 DGDFVVSDSFAILMYLEEKYP-QPPLLPSDLKRKAINYQ--KYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYA 134 (194)
Q Consensus 58 ~~~~~l~es~~I~~yL~~~~~-~~~l~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l 134 (194)
.+|..+.++..+..|.+.... ...+++.+ .++.+++. .+... .....+...+..+++.|.- ..||
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~---------~~~~~~s~~~~~ld~~l~~--~t~l 110 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST---------FSFDEISSSLSELDKFLVL--RTFL 110 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh---------cchHHHHHHHHHHHhhhhH--HHHh
Confidence 456777777777777664432 23477776 56666654 22211 2335588889999999998 9999
Q ss_pred cCCCCcHHHHhhHHHHHHHHHhcCCC---CCCchhHHHHHHHHhcChhhhh
Q 029352 135 TGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEAYSKLPAFQN 182 (194)
Q Consensus 135 ~G~~~s~aD~~l~~~l~~~~~~~~~~---~~~~p~l~~~~~~~~~~p~~~~ 182 (194)
+|.++|+||+++|++++.- ...... -..+.++.+||+-....+..+.
T Consensus 111 vg~sls~Ad~aiw~~l~~n-~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~ 160 (712)
T KOG1147|consen 111 VGNSLSIADFAIWGALHSN-GMRQEQLKAKKDYQNVERWYDLPEFQEAHNK 160 (712)
T ss_pred hccchhHHHHHHHHHHhcc-cchHHHHHhhCCchhhhhhcCcHhHHHHHHH
Confidence 9999999999999998864 111111 2456789999984443333333
No 141
>PRK10853 putative reductase; Provisional
Probab=96.92 E-value=0.0013 Score=43.41 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.3
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|.-|++++-+|...|++|+.+.+-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 899999999999999999999999999998765
No 142
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0013 Score=43.36 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=31.0
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|.-|++++-.|...||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 699999999999999999999999999988765
No 143
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.82 E-value=0.0062 Score=38.28 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=50.4
Q ss_pred eeecccCCCc------hhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCC----CCCcceEEeCCEEeecHHHHHH
Q 029352 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~L~~~~~~~------~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~l~~~~~~l~es~~I~~ 71 (194)
+++|++..++ .|+.++.+|.-+||+|+.+.++... ....++.+..+ ..++|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5778766655 5789999999999999999998542 23345554543 3688989899988888766555
No 144
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.82 E-value=0.0014 Score=42.82 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=30.3
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
++||+.+.|++|.+++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999999876
No 145
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.72 E-value=0.0021 Score=41.50 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|++|++++-+|...||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999886
No 146
>PTZ00062 glutaredoxin; Provisional
Probab=96.63 E-value=0.008 Score=43.58 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHH
Q 029352 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
+.||+|.++.-+|...||+|+...+.-. ......+.+.+-..++|.+..+|..|.+...+.+.
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 4799999999999999999998877622 22234455666667999999999988887776663
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.34 E-value=0.0048 Score=40.66 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.9
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|++|++++-+|...||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999998875
No 148
>PRK10026 arsenate reductase; Provisional
Probab=96.29 E-value=0.0051 Score=41.82 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=30.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|.-|++++-+|...|++|+.+.+-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 489999999999999999999999999998865
No 149
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.017 Score=34.26 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=45.0
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCC--------CCCCchhhhhcCCCC--CcceEE-eCCEEee
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK--------GEQFSPDFLKINPIG--YVPALV-DGDFVVS 64 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--------~~~~~~~~~~~~p~~--~vP~l~-~~~~~l~ 64 (194)
|.+||+...||-|......|+-.++.|+.+.+.-.- -.+..++|-+....| -+|.|- +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 468999999999999999999999999999887321 011233333222233 479887 7776665
No 150
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.17 E-value=0.007 Score=39.07 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|+.|++++-+|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999876
No 151
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.12 E-value=0.0077 Score=39.43 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
++||+.+.|+.|++++-+|...|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999999775
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.47 E-value=0.021 Score=38.15 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|.-|++++-+|...||+|+.+.+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 78999999999999999999999999999765
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.42 E-value=0.13 Score=31.00 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=38.8
Q ss_pred eeecccCCCchhHHH----HHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEee
Q 029352 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~L~~~~~~~~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 64 (194)
+.+| .++||.|..+ .-++.+.|++++...++- ..+..+ .-...+|++..||..++
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEEE
Confidence 4566 5999999988 668888899988888861 222222 34668899998875554
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.18 E-value=0.098 Score=32.61 Aligned_cols=57 Identities=19% Similarity=0.104 Sum_probs=39.1
Q ss_pred eeecccCCCchhHHHHHHHHhc-----CCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEee
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 64 (194)
+.+|..++|++|..+.-++... ++.+..+.++ . ..+......-..+|.++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~-----~-~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA-----L-FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH-----h-CHHHHHHcCCccCCEEEECCEEEE
Confidence 5788889999999888877654 5666666654 2 233444444667899997776544
No 155
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.07 E-value=0.031 Score=36.65 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=29.7
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|.-|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988765
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.01 E-value=0.033 Score=36.39 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.6
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+++|+.+.|.-|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 157
>PHA02125 thioredoxin-like protein
Probab=94.90 E-value=0.12 Score=30.91 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=36.9
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEe
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 58 (194)
|+.+|+.++|+.|..+.-.|+. +++....++.. ...++.....-..+|++.+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 8899999999999998887764 55666656522 1335555555668899983
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.87 E-value=0.13 Score=31.05 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=38.0
Q ss_pred CeeecccCCCchhHHHHHHHHh----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCE
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 61 (194)
++++|+.++|++|..+.-.+.. .+..+....++... ..+.........+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988887753 35445555665332 223334444567999997764
No 159
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.63 E-value=0.19 Score=30.59 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=38.4
Q ss_pred eeecccCCCchhHHHHHHHHhcC--CcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCC
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD 60 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 60 (194)
++||+.+.|+-|..+...|.... .+++...++... ++++.... ...||||..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y-~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKY-GYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHS-CTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHh-cCCCCEEEEcC
Confidence 68999999999999999999643 456666666542 34444444 24899999666
No 160
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.61 E-value=0.11 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHHh---cCCcceEEEcccCCCCCCchhhhhc-C-CCCCcceEE-eCCE-------------EeecHHHH
Q 029352 9 RSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKI-N-PIGYVPALV-DGDF-------------VVSDSFAI 69 (194)
Q Consensus 9 ~~~~~~~vr~~l~~---~gi~~~~~~v~~~~~~~~~~~~~~~-~-p~~~vP~l~-~~~~-------------~l~es~~I 69 (194)
.||.|..+.=+|+. ..-..+++.|+..+. ..+..+. . ....+|+|+ .+|. .|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 48888888877774 333566677775542 1222222 1 246789999 4443 79999999
Q ss_pred HHHHHhhCC
Q 029352 70 LMYLEEKYP 78 (194)
Q Consensus 70 ~~yL~~~~~ 78 (194)
++||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999996
No 161
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.32 Score=30.78 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=47.2
Q ss_pred cCCCchhHHHHHHHHhcC-CcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHH
Q 029352 7 YWRSSCSHRVRIGLNLKG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 7 ~~~~~~~~~vr~~l~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL 73 (194)
++-|+|+.++--+|..+| ++|..+.|--+ ......+++.+--.++|-|-.+|.-+-+|.-|.+..
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 456999999999999999 67766655421 122334445566679999999999998887776654
No 162
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.76 E-value=0.73 Score=27.59 Aligned_cols=56 Identities=21% Similarity=0.126 Sum_probs=35.6
Q ss_pred eeecccCCCchhHHHHH----HHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeec
Q 029352 2 LKLFSYWRSSCSHRVRI----GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 65 (194)
++++ .+.||+|..+.- ++...|+.++...+. ..++. .......+|+++.||...+.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 4564 677999996665 444567777666552 13344 45557789999988865443
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.23 E-value=0.34 Score=26.68 Aligned_cols=53 Identities=30% Similarity=0.248 Sum_probs=34.6
Q ss_pred eeecccCCCchhHHHHHHHH-----hcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE
Q 029352 2 LKLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (194)
+.+|+...|++|.+.+..+. ..++.+..+.++-.. .........+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEE
Confidence 35666788999999999999 456666666555221 111112356778899988
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.21 E-value=0.49 Score=33.30 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcc-CCCcccCCC-CcHHHHhhHHHHHHH
Q 029352 114 HIGKGFAALEKLLKDY-AGKYATGDE-VFLADLYLAPQLYAA 153 (194)
Q Consensus 114 ~~~~~l~~le~~L~~~-~~~~l~G~~-~s~aD~~l~~~l~~~ 153 (194)
.-.+++..|++.|+.. ...|+.|+. +|-+||.+++.|..+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 4677888999999882 128999977 999999999999987
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.42 E-value=0.66 Score=29.56 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=38.5
Q ss_pred eeecccCCCc------hhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcC---------CCCCcceEEeCCEEeecH
Q 029352 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN---------PIGYVPALVDGDFVVSDS 66 (194)
Q Consensus 2 ~~L~~~~~~~------~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~vP~l~~~~~~l~es 66 (194)
+++|.+..++ ..+++..+|..++|+|+.+.+.... ......++.. +..-.|-+..|+..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e--~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE--EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H--HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH--HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 5778766655 4679999999999999999888532 1222333322 222335677777766665
Q ss_pred HHHHH
Q 029352 67 FAILM 71 (194)
Q Consensus 67 ~~I~~ 71 (194)
..+-+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 166
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=90.15 E-value=2 Score=28.35 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=12.9
Q ss_pred ceEE--eCCEEeecHHHHHHHHHhhCC
Q 029352 54 PALV--DGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 54 P~l~--~~~~~l~es~~I~~yL~~~~~ 78 (194)
|-|. .+|..++|+.||++|+..-+-
T Consensus 37 ~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 37 PLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp --EEE-S--S----HHHHHHHHTT--T
T ss_pred ceeeecCCceEEecccHHHHHHHhhcC
Confidence 7885 568999999999999988763
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.36 E-value=0.41 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.9
Q ss_pred cccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 5 FSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
|+.+.|.-|++++-+|...||+|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 67889999999999999999999998775
No 168
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=88.24 E-value=0.61 Score=34.24 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhh
Q 029352 116 GKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQN 182 (194)
Q Consensus 116 ~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~ 182 (194)
...+..++..|.+ ++|+-|.++|-+|+.+|..+.-- ..-..+++..+||..+.+.-.+.+
T Consensus 10 ~~glk~l~~sLA~--ks~~~g~~~s~edv~vf~al~~e-----p~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKLNKSLAE--KSYIEGYQLSKEDVVVFAALGVE-----PQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhhhHhhhc--ccCCCCCCcccccceeehhcccC-----cchhhhhHHHHHHHHHHHHHHHHh
Confidence 5678889999999 99999999999999998864221 113456788999998888766654
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.88 E-value=3.4 Score=34.97 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=39.1
Q ss_pred eeecccCCCchhHHHHHH----HHhc-CCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEee
Q 029352 2 LKLFSYWRSSCSHRVRIG----LNLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~----l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 64 (194)
+++|..+.||+|-.+.-+ +.+. +|..+.+.+. . .++..+...-..||.++.||.++.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~-----~-~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS-----H-FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc-----c-cHHHHHhCCceecCEEEECCEEEE
Confidence 577888999999876553 4444 6888877765 2 235554555778999997775443
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.46 E-value=1.5 Score=36.62 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=44.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeec----HHHHHHHHHhh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD----SFAILMYLEEK 76 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e----s~~I~~yL~~~ 76 (194)
+++|..+.||+|-.+.-+++..-+....+...+.++.. .+++.+......||.+..|+..+.+ -..+++.+...
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 67899999999998777766543321122222222323 3455555567799999977755554 24455665543
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.28 E-value=1.4 Score=36.77 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeec
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 65 (194)
+++|.++.||+|-.+.-+++..-+..-.+...+.++... +++........||.+..|+..+.+
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCCcccCEEEECCcEEEe
Confidence 578889999999988777765444322222222223333 344455567799999977755554
No 172
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=4.1 Score=29.92 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=49.1
Q ss_pred cCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHH
Q 029352 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 7 ~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL 73 (194)
.+.|++++++--+|...|++|+...|-.+ +....-.++.+...+.|-|-.+|.-+.++.-|.+.+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 46699999999999999999998877522 122334456677789999999998888776666543
No 173
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.40 E-value=10 Score=24.51 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=34.9
Q ss_pred eecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEee
Q 029352 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~ 64 (194)
..|+.++|+.|+.+.-.+.. .++ ....++.. ...++.+...-..+|+++ .+|..+.
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34567889999977766644 344 44444422 234455555567889887 6786654
No 174
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=79.10 E-value=11 Score=22.33 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=33.3
Q ss_pred eeecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCE
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 61 (194)
+..|+.++|+.|+...-.+.. .++.+-.+.++ . ...+........+|+++ .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~----~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E----NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--C----ChhHHHhcCcccccEEEEEECCE
Confidence 345667889999988877776 55555544443 1 23344444456789877 5664
No 175
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=78.99 E-value=16 Score=24.11 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=21.0
Q ss_pred eeecccCCCchhHHHHHHHH----hcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLN----LKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~----~~gi~~~~~~v~ 33 (194)
+..|+.++||+|+.+.=.|. ..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 34567889999998555444 345666666555
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=78.19 E-value=9.1 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=33.0
Q ss_pred eeecccCCCchhHHHHHHHHh----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
+.+|+.++|+.|....-.+.. .+-.+....++.. ...++....--..+|++. .+|.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 456667899999987766644 2213444444432 233444333346789776 666544
No 177
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=74.00 E-value=12 Score=24.25 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=29.7
Q ss_pred cccCCCchhHHHHHHHHhcCCc---ceEEEcccCCCCCCchhhhhcCCCCCcceEE
Q 029352 5 FSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (194)
++.++|++|+.++-++....-. .+...++.. ...++.....-..+|++.
T Consensus 29 f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 29 SSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred eCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 3567899999888777644321 233333322 234555555567889887
No 178
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=72.92 E-value=6.5 Score=24.72 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=29.8
Q ss_pred eeecccCCCchhHHHHHHH--------HhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE
Q 029352 2 LKLFSYWRSSCSHRVRIGL--------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (194)
+..|+.++|+.|++..-.+ ...+ .+....++..........+........+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3456678899999875332 1222 45555555332111123444444456789887
No 179
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=72.42 E-value=5 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.8
Q ss_pred cceEE-eCCEEeecHHHHHHHHHhhCC
Q 029352 53 VPALV-DGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 53 vP~l~-~~~~~l~es~~I~~yL~~~~~ 78 (194)
+|.+. .+|.++++|..|++++.++|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 899999999999999998774
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=65.79 E-value=31 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=31.8
Q ss_pred eeecccCCCchhHHHHHHHHhcCC---cceEEEcccCCCCCCchhhhhcCCCCCcceEE
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (194)
+++|+.++|++|..+..++...-- ..+...++.. ..++......-..+|+++
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 456778999999988877775321 2333334422 234444445566789998
No 181
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=13 Score=28.36 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcC----CCCCcceEEeCCEEeecHHHHHHH
Q 029352 12 CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN----PIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 12 ~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~l~es~~I~~y 72 (194)
.|..||.+|+-.+|.|+++.|.+.. ...+++..+. -.-.+|.+..+|..|-+.-.|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~--~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDS--EFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccH--HHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 4889999999999999999999875 2345555332 235689777999888887777653
No 182
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=62.54 E-value=13 Score=25.30 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=48.0
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhh-cC---CCCCcceEEeCCEEeec---HHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-IN---PIGYVPALVDGDFVVSD---SFAILMYLE 74 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~-~~---p~~~vP~l~~~~~~l~e---s~~I~~yL~ 74 (194)
|..|+.++|++|..-.-.++.+|+++..+..+- -..+++ .. ..+.--+.+.||..+-+ ..+|.+.|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d------~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD------FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc------HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 578889999999999899999999888887651 112221 11 12233466677765543 478999998
Q ss_pred hhC
Q 029352 75 EKY 77 (194)
Q Consensus 75 ~~~ 77 (194)
...
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 865
No 183
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=62.35 E-value=33 Score=20.94 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=41.2
Q ss_pred eeecccCCCchhHHHHHHHHh----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe------ecHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV------SDSFAI 69 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~~I 69 (194)
+..|+.++|+.|+...-.+.. .+-++....++.. ....+....-...+|.+. .+|... .+...|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 345667899999987744432 2215555555532 234455555577889887 666443 234556
Q ss_pred HHHHHh
Q 029352 70 LMYLEE 75 (194)
Q Consensus 70 ~~yL~~ 75 (194)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666553
No 184
>PTZ00051 thioredoxin; Provisional
Probab=56.41 E-value=44 Score=20.40 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=30.7
Q ss_pred eecccCCCchhHHHHHHHHhc---CCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEE
Q 029352 3 KLFSYWRSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 62 (194)
..|+.++|+.|+...-.+... ...+....++.. ....+.+......+|+++ .+|..
T Consensus 23 i~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 23 VDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 356678899998776555442 112333444422 123444444456789876 56644
No 185
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.77 E-value=38 Score=21.67 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=39.3
Q ss_pred ecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCc-hhhhhcC---CCCCcceEEeCCE-EeecHHHHHHHHHhh
Q 029352 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFS-PDFLKIN---PIGYVPALVDGDF-VVSDSFAILMYLEEK 76 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~-~~~~~~~---p~~~vP~l~~~~~-~l~es~~I~~yL~~~ 76 (194)
|+|...||.|....-.+...+..-....++........ .....++ ....+-+ ..+|. .+.++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 45678899999887777776653333334431111110 0111121 2233333 55664 999999999875553
No 186
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=53.60 E-value=46 Score=20.23 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=32.8
Q ss_pred eecccCCCchhHHHHHHHHhc----CCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
..|+.++|+.|++..-.+... +..+....++.. . ..++........+|++. .+|..+
T Consensus 19 v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~---~-~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 19 LHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE---E-LPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc---c-CHHHHHhcCCccccEEEEEECCEEE
Confidence 345678899999887666542 334555555532 1 23333333355689877 666543
No 187
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=50.47 E-value=52 Score=19.50 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhhCCC--CCCCCCcHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCcHH
Q 029352 65 DSFAILMYLEEKYPQ--PPLLPSDLKRKAINYQKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 142 (194)
Q Consensus 65 es~~I~~yL~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~a 142 (194)
|...|+.++..-+|. ..+.+.+..+....+...+.+. + +..+...+.+++.. ++| -||+|
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~~k~~v~~W~~~L~d~----~--------ye~v~~al~~~i~~--~kf----PPsia 66 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTDSKETVDLWYDMLKDY----D--------YEIVMKALKKHIAT--NKF----PPSIA 66 (71)
T ss_dssp HHHHHHHHHHHHST---TT---STHHHHHHHHHHHHTTS-------------HHHHHHHHHHHHHH---SS-------GG
T ss_pred HHHHHHHHHHHHCCcchhccchhhHHHHHHHHHHHHHhC----C--------HHHHHHHHHHHHHh--CCC----CcCHH
Confidence 567789999999983 4555665544444433333322 1 44455556666666 455 57777
Q ss_pred HHh
Q 029352 143 DLY 145 (194)
Q Consensus 143 D~~ 145 (194)
|+.
T Consensus 67 eii 69 (71)
T PF11417_consen 67 EII 69 (71)
T ss_dssp GG-
T ss_pred HHh
Confidence 763
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=49.58 E-value=74 Score=23.12 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=32.7
Q ss_pred eeeccc---CCCchhHHHHHHHHhc-----CCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCE
Q 029352 2 LKLFSY---WRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 2 ~~L~~~---~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 61 (194)
+.+|+. ++|+.|..+.-.++.. ++.+....++.. ...+.....--..+|+++ .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCe
Confidence 356666 7899999877777654 233334444421 233444444466789887 5553
No 189
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=47.94 E-value=15 Score=21.09 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=20.3
Q ss_pred eecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
++|.+....-+..++-+|+..||++......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6787777778999999999999999887554
No 190
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=42.46 E-value=89 Score=19.87 Aligned_cols=56 Identities=16% Similarity=-0.003 Sum_probs=29.7
Q ss_pred eecccCCCchhHHHHHHH-----HhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEE
Q 029352 3 KLFSYWRSSCSHRVRIGL-----NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 62 (194)
..|+.++|+.|+...-.+ .+.|..+....++.. ....+.....-..+|++. .+|..
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 345678899987654333 222323444444422 123343344456789887 66644
No 191
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=42.42 E-value=39 Score=21.62 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=31.2
Q ss_pred eecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEeec
Q 029352 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 65 (194)
..|+.++|+.|+.+.-.+.. .++.| ..++.. . . .+.+..--..+|+++ .+|..+..
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~---~-~-~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAE---K-A-FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEch---h-h-HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 34567889988876655543 23333 344422 1 1 333333456789887 67765543
No 192
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.49 E-value=30 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHhcCCcceEEEcc
Q 029352 10 SSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 10 ~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
-++++|+.-+|+..||+|+..+..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC
Confidence 568999999999999999998765
No 193
>PHA02278 thioredoxin-like protein
Probab=35.02 E-value=1.2e+02 Score=19.22 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=29.9
Q ss_pred cccCCCchhHHHHHHHHhc----C--CcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 5 FSYWRSSCSHRVRIGLNLK----G--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~~----g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
|+.++|+.|+.+.=.+... + +++..+.++-.+ ....++....--..+|+++ .||..+
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~--~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAED--VDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccc--cccHHHHHHCCCccccEEEEEECCEEE
Confidence 4567899988666444332 2 334333333110 0013344444456789887 677554
No 194
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=34.44 E-value=1.6e+02 Score=20.35 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred ecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCC------CCcceEE--eCCEEee
Q 029352 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI------GYVPALV--DGDFVVS 64 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~vP~l~--~~~~~l~ 64 (194)
.|+.++|+.|+...-.+.. .+-.+....++... ..+..+..-- ..+|+++ .+|..+.
T Consensus 53 ~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 53 EFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4557789988866544432 22234555555432 2233222212 3489887 7776654
No 195
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.03 E-value=68 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.2
Q ss_pred eeecccCCCchhHH----HHHHHHhc-CCcceEEEcccC
Q 029352 2 LKLFSYWRSSCSHR----VRIGLNLK-GLEYEYKAVNLV 35 (194)
Q Consensus 2 ~~L~~~~~~~~~~~----vr~~l~~~-gi~~~~~~v~~~ 35 (194)
+++|+...||||.. ++-+++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 57888889999874 44455555 899998888754
No 196
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.83 E-value=1e+02 Score=22.75 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=38.7
Q ss_pred CeeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhc-CCCCCcceEEeCCEEe
Q 029352 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-NPIGYVPALVDGDFVV 63 (194)
Q Consensus 1 m~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~-~p~~~vP~l~~~~~~l 63 (194)
|+++|.+.+|..|....-.|+.+|+-=.+..++ ...+.|... +---.+|.+..||..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~-----a~~p~f~~~~~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIID-----AELPPFLAFEKGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEE-----cCCChHHHhhcceeecceEEEcCeEE
Confidence 578999999999999999999998855555444 123333322 2234678777666443
No 197
>PRK09266 hypothetical protein; Provisional
Probab=33.50 E-value=47 Score=25.07 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhhC
Q 029352 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 19 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~~ 77 (194)
.+...|+++++..+.+.+-....+-|.--+-.|-+||-..|+..+.....|.+.|.+.+
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 45567999999888754322223334433446889999988877754456777666554
No 198
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=33.50 E-value=71 Score=19.54 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=27.4
Q ss_pred eecccCCCchhHHHHHHH----HhcC--CcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCE
Q 029352 3 KLFSYWRSSCSHRVRIGL----NLKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 61 (194)
.+|+.++|+.|+...=.+ .... -.+....++... +....+.....-..+|.++ .+|.
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCC
Confidence 455678899998764222 2211 223333334221 1123333333345679876 4554
No 199
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=33.32 E-value=1.4e+02 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.0
Q ss_pred eeecccCCCchhHHHH
Q 029352 2 LKLFSYWRSSCSHRVR 17 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr 17 (194)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 3456678899999765
No 200
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.90 E-value=60 Score=19.06 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=25.5
Q ss_pred ecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
++.|.....+.++.-.|...|++++..+++
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 455677788999999999999999998776
No 201
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=30.36 E-value=1.6e+02 Score=19.10 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=29.1
Q ss_pred ecccCCCchhHHHHHHHHh------cCCcceEEEcccCCCCCCchhhhhcCCCC-CcceEE--e-CCEEee
Q 029352 4 LFSYWRSSCSHRVRIGLNL------KGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALV--D-GDFVVS 64 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~------~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~--~-~~~~l~ 64 (194)
-|+..+|+.|+...-.+.. .+..|..+.++ ... .......+..| .+|++. + +|..+.
T Consensus 25 ~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd--~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 25 LIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE--DDE--EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEec--CCC--CchhhhcccCCCccceEEEECCCCCCch
Confidence 3557889999877554444 22344444443 211 11112334443 489887 3 565544
No 202
>PRK15371 effector protein YopJ; Provisional
Probab=30.30 E-value=2.3e+02 Score=21.97 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHH-hc-CCCCCCchhHHHHHHHHh
Q 029352 110 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN-RF-NLDMTQFPLLLRLHEAYS 175 (194)
Q Consensus 110 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~-~~-~~~~~~~p~l~~~~~~~~ 175 (194)
...+++...++.||+.++. +.|+ ...++..|+-+.+.|..... ++ +..+.-+..-..+++.+.
T Consensus 23 ~~~~~L~~~i~~le~~~~~--G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIAD--GSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHc--CCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHH
Confidence 4667799999999999998 6776 45589999999999888721 22 344544445555555555
No 203
>COG3150 Predicted esterase [General function prediction only]
Probab=30.19 E-value=65 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=25.6
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 33 (194)
+-|++|+.||.+.+..+.+...+-....+.+.
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~ 34 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYS 34 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeee
Confidence 46889999999999999999987665555444
No 204
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.05 E-value=1.1e+02 Score=21.56 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=30.5
Q ss_pred ecccCCCchhHHHHHHHHh---cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEeec
Q 029352 4 LFSYWRSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~---~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 65 (194)
.|+.++|+.|..+--.|.. .--.+....++.. . . .+....+-..+|++. .+|..+..
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d---~-~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS---A-T-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc---c-h-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 3456788988755433322 1112334444422 1 1 344445567899887 67866544
No 205
>PRK09381 trxA thioredoxin; Provisional
Probab=29.88 E-value=1.4e+02 Score=18.54 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=30.2
Q ss_pred ecccCCCchhHHHHHHHH----hcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 4 LFSYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
.|+.++|+.|+...-.+. ..+-.+....++... ...+........+|+++ .+|..+
T Consensus 27 ~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 27 DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 345678999887654443 222234445555332 22333333456789886 667544
No 206
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=29.86 E-value=1.7e+02 Score=19.35 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=33.4
Q ss_pred ecccCCCchhHHHHH-------HHHhcCCcceEEEcccCCCCCCchhhhh----cCCCCCcceEE---eCCEEeecH
Q 029352 4 LFSYWRSSCSHRVRI-------GLNLKGLEYEYKAVNLVKGEQFSPDFLK----INPIGYVPALV---DGDFVVSDS 66 (194)
Q Consensus 4 L~~~~~~~~~~~vr~-------~l~~~gi~~~~~~v~~~~~~~~~~~~~~----~~p~~~vP~l~---~~~~~l~es 66 (194)
.++..+|++|++.-- +....+-.|..+.++..........+.+ .+-.+-+|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 356788999987642 2222344677777775321111111111 12234578777 467777665
No 207
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=29.74 E-value=68 Score=21.03 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCCcceEE-eCCEEeecHHHHHHHHHh
Q 029352 50 IGYVPALV-DGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 50 ~~~vP~l~-~~~~~l~es~~I~~yL~~ 75 (194)
..++|.++ |+..++.+...|.+-+..
T Consensus 81 i~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 81 ITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred ccccCEEEEcCCeEEecccHHHHHHHH
Confidence 34899888 667899999888876654
No 208
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=29.03 E-value=1.5e+02 Score=23.17 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHH
Q 029352 114 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAA 153 (194)
Q Consensus 114 ~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~ 153 (194)
.+...+..||..-......--.|.++|+||+.+..-...+
T Consensus 73 ~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAi 112 (297)
T cd08200 73 ELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAV 112 (297)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHH
Confidence 3666666666665542112223567999999887766665
No 209
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=28.84 E-value=1.6e+02 Score=18.83 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=27.9
Q ss_pred CCCcccC-CCCcHHHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 029352 130 AGKYATG-DEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAY 174 (194)
Q Consensus 130 ~~~~l~G-~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~ 174 (194)
+++||.. .+=..+++.++-+|.++..+.|.. ..+.+-+||..+
T Consensus 4 ~~~~L~~iP~~~~s~~~~~eWLefLve~~G~~--~~~~~L~YY~~i 47 (99)
T PF04659_consen 4 EKPYLETIPEDYVSEIVVFEWLEFLVERVGHN--NAADALDYYESI 47 (99)
T ss_pred CCchhhcCCcchHHHHHHHHHHHHHHHHcccc--cHHHHHHHHHHc
Confidence 3566665 445788999999999987777742 223444555443
No 210
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=28.73 E-value=43 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.5
Q ss_pred chhHHHHHHHHhcChhhhh
Q 029352 164 FPLLLRLHEAYSKLPAFQN 182 (194)
Q Consensus 164 ~p~l~~~~~~~~~~p~~~~ 182 (194)
.-.|++|.+++.++|.+..
T Consensus 111 r~~LqrfL~RV~~hP~L~~ 129 (140)
T cd06891 111 KANLQRWFNRVCSDPILIR 129 (140)
T ss_pred HHHHHHHHHHHhCChhhcc
Confidence 3579999999999997653
No 211
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=28.12 E-value=1.8e+02 Score=19.12 Aligned_cols=59 Identities=7% Similarity=-0.029 Sum_probs=28.9
Q ss_pred CCCchhHHHHHHH----HhcCCcceEEEcccCCCC---CCchhhhhcCCCC-CcceEE--eCCEEeecH
Q 029352 8 WRSSCSHRVRIGL----NLKGLEYEYKAVNLVKGE---QFSPDFLKINPIG-YVPALV--DGDFVVSDS 66 (194)
Q Consensus 8 ~~~~~~~~vr~~l----~~~gi~~~~~~v~~~~~~---~~~~~~~~~~p~~-~vP~l~--~~~~~l~es 66 (194)
.+|+.|+.+.-.+ ....-.+....|+..... +...++....-.. .+|+++ .++..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 6899888654333 333322444555532210 1123333322234 789988 555555553
No 212
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.44 E-value=98 Score=18.48 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=22.4
Q ss_pred HHhhHHHHHHHHHhcCCC-----CCCchhHHHHHHHHhcC
Q 029352 143 DLYLAPQLYAAVNRFNLD-----MTQFPLLLRLHEAYSKL 177 (194)
Q Consensus 143 D~~l~~~l~~~~~~~~~~-----~~~~p~l~~~~~~~~~~ 177 (194)
-|-+...+.++ ...|.+ +.+.|.|.+|++-+..+
T Consensus 31 SiR~M~L~~~w-R~~G~~i~F~~La~~PTl~aW~qLl~~~ 69 (74)
T COG3433 31 SIRMMALLERW-RKRGADIDFAQLAANPTLAAWWQLLSTR 69 (74)
T ss_pred HHHHHHHHHHH-HHcCCcccHHHHHhCccHHHHHHHHHhc
Confidence 34455555665 445543 36679999999988765
No 213
>PRK10996 thioredoxin 2; Provisional
Probab=27.19 E-value=2e+02 Score=19.24 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=32.3
Q ss_pred eecccCCCchhHHHHHHHHh----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
..|+.++|+.|+...-.+.. .+-.+....++.. ...++.+..--..+|+++ .+|..+
T Consensus 57 v~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 57 IDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 34567889998875444433 2323444555532 234444444456789887 667544
No 214
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=27.14 E-value=1.5e+02 Score=17.85 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=31.4
Q ss_pred ecccCCCchhHHHHHHHHhcC----CcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEE
Q 029352 4 LFSYWRSSCSHRVRIGLNLKG----LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 62 (194)
.|+.++|+.|++..-.+.... -.+....++.. ....+.+......+|+++ .+|..
T Consensus 18 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 18 DFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 345778999987765554322 13444555532 233444444456789887 66654
No 215
>PHA03075 glutaredoxin-like protein; Provisional
Probab=26.26 E-value=1.1e+02 Score=20.24 Aligned_cols=64 Identities=22% Similarity=0.140 Sum_probs=43.5
Q ss_pred eeecccCCCchhHHHHHHHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHh
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~ 75 (194)
+.|+|-+.|+-|+.+.-+|++.--+|+..+|+.. .|. +..|++=+|..|+. +.=-..+.+||..
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl-------SfF--sK~g~v~~lg~d~~-y~lInn~~~~lgn 68 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNIL-------SFF--SKDGQVKVLGMDKG-YTLINNFFKHLGN 68 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEee-------eee--ccCCceEEEecccc-eehHHHHHHhhcc
Confidence 5789999999999999999999999999998732 221 23456666664331 1112456666654
No 216
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=25.86 E-value=1.7e+02 Score=17.95 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=29.2
Q ss_pred eecccCCCchhHHHHHHHHhcCC----cceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCE
Q 029352 3 KLFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~~gi----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 61 (194)
..|+.++|+.|+...-.+....- .+....++... ...+.+...-..+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 34567889998866555433211 24444555332 23333333356789886 5553
No 217
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=25.77 E-value=1.2e+02 Score=17.06 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCCcccCCCC-cHHHHhhH
Q 029352 117 KGFAALEKLLKDYAGKYATGDEV-FLADLYLA 147 (194)
Q Consensus 117 ~~l~~le~~L~~~~~~~l~G~~~-s~aD~~l~ 147 (194)
.....|.+.+.. +.|-.|+++ |..+++--
T Consensus 4 ~i~~~l~~~I~~--g~~~~g~~lps~~~la~~ 33 (64)
T PF00392_consen 4 QIYDQLRQAILS--GRLPPGDRLPSERELAER 33 (64)
T ss_dssp HHHHHHHHHHHT--TSS-TTSBE--HHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCCCEeCCHHHHHHH
Confidence 345566777777 889999988 88887643
No 218
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=25.57 E-value=48 Score=18.96 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=15.3
Q ss_pred eeecccCC----CchhHHHHHHHHh
Q 029352 2 LKLFSYWR----SSCSHRVRIGLNL 22 (194)
Q Consensus 2 ~~L~~~~~----~~~~~~vr~~l~~ 22 (194)
|+||-+.. +.+|++|-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 56775554 6699999888764
No 219
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=25.34 E-value=83 Score=19.59 Aligned_cols=54 Identities=11% Similarity=-0.077 Sum_probs=27.4
Q ss_pred ecccCCCchhHHHHHHHHh----cC-CcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEE
Q 029352 4 LFSYWRSSCSHRVRIGLNL----KG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 62 (194)
.|+.++|+.|+...-.+.. .+ -......++.. ..+.....--..+|++. .+|..
T Consensus 23 ~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 23 DVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEE
Confidence 4567889998866544432 22 11233333322 12333333355678776 66654
No 220
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=25.28 E-value=1.5e+02 Score=17.98 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccCCCCcHHHHhhHHHHHHHHHhcCCC-C-CCchhHHHHHHHHh
Q 029352 111 AKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-M-TQFPLLLRLHEAYS 175 (194)
Q Consensus 111 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~-~-~~~p~l~~~~~~~~ 175 (194)
...+++..=..++-.... .+|+. .+++ |+..|+++.++ ...+.. . +.--++..|.+++.
T Consensus 16 il~Qie~YdNli~~vVe~--~ky~t--~l~~-DvL~~~ll~~L-~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 16 ILSQIESYDNLIEPVVES--LKYFT--DLGY-DVLTFCLLERL-SNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHhhhhHHHHHHH--Hhhcc--hhhH-HHHHHHHHHHH-hcccchhcCcCCCCHHHHHHHHh
Confidence 333344333334444444 56663 2444 89999999988 423322 2 44478999999875
No 221
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=25.24 E-value=1.1e+02 Score=15.57 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.2
Q ss_pred CCCcceEEeCCEEeecHHHHHHHHH
Q 029352 50 IGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 50 ~~~vP~l~~~~~~l~es~~I~~yL~ 74 (194)
.|.+|....++..++....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5778887777888999899888875
No 222
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=24.88 E-value=76 Score=19.81 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=27.5
Q ss_pred eecccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCC
Q 029352 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGD 60 (194)
Q Consensus 3 ~L~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~ 60 (194)
..|+.++|+.|+...=.+.. .++. ...++.. .....+....--..+|++. ++|
T Consensus 23 V~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~---~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 23 VLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEES---SIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECC---CCCHHHHHhcCCeecCEEEEEcCC
Confidence 34557889999877655433 3433 3334311 1223333333355679776 455
No 223
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=24.74 E-value=2.7e+02 Score=20.00 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=29.1
Q ss_pred cccCCCchhHHHHHHHHh-----cCCcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEeec
Q 029352 5 FSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 65 (194)
|+.++|+.|..+--.|.. ..+.|-.+.++ ......+-..+|++. .+|..+..
T Consensus 109 Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 109 LYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEE
Confidence 446788888866444432 33433333332 112344667899887 77765544
No 224
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=1.1e+02 Score=20.34 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHhcCCcceEEEcccCCCCCCchh---hhhcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPD---FLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 9 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~---~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
..|-...++..++.+|+.|..++|.... -..++ +...-.-..=|||.. .-+++.++.-|....
T Consensus 43 ~QP~~~~i~~aa~~aGl~y~~iPV~~~~--iT~~dV~~f~~Al~eaegPVlay---CrsGtRs~~ly~~~~ 108 (130)
T COG3453 43 GQPGFAAIAAAAEAAGLTYTHIPVTGGG--ITEADVEAFQRALDEAEGPVLAY---CRSGTRSLNLYGLGE 108 (130)
T ss_pred CCCChHHHHHHHHhcCCceEEeecCCCC--CCHHHHHHHHHHHHHhCCCEEee---ecCCchHHHHHHHHH
Confidence 4677889999999999999999998432 11222 222212223378762 112345666665443
No 225
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=23.36 E-value=57 Score=21.77 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=23.6
Q ss_pred eecccCCCchhHH----HHHHHHhc-CCcceEEEcccCCCCCCchhhhhcCCCCCcceEE
Q 029352 3 KLFSYWRSSCSHR----VRIGLNLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 3 ~L~~~~~~~~~~~----vr~~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 57 (194)
.++.-.+||-|.+ +.-+++.. +|++.....+-.. .....++. +-...||+++
T Consensus 46 lvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~--el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 46 LVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK--ELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH--HHTTTTTT--SS--SSEEE
T ss_pred EEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh--hHHHHHHh-CCCeecCEEE
Confidence 3455678888774 33344445 6777766555110 11222333 4456899998
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=23.13 E-value=1e+02 Score=23.21 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.3
Q ss_pred eeecccCCCchhHHHHHHHH
Q 029352 2 LKLFSYWRSSCSHRVRIGLN 21 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~ 21 (194)
+..|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 45667778999999876654
No 227
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=22.98 E-value=99 Score=22.03 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=20.7
Q ss_pred eeecccCCCchhHHHHHHHHh--cCCcceEEEc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAV 32 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~--~gi~~~~~~v 32 (194)
+.+|..+.||+|++..-.+.. .++.+....+
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 456777889999999888764 3444444433
No 228
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=22.68 E-value=83 Score=23.38 Aligned_cols=57 Identities=14% Similarity=0.015 Sum_probs=34.5
Q ss_pred HHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEe--ecHHHHHHHHHh
Q 029352 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYLEE 75 (194)
Q Consensus 19 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l--~es~~I~~yL~~ 75 (194)
.+...|+++++..+...+-....+-|.--+-.|-+||-..++..+ .....|.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 456789999998887543222233333334457789998777665 333456555543
No 229
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=22.48 E-value=1.7e+02 Score=18.16 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=28.5
Q ss_pred ecccCCCchhHHHHHHHHhcC---CcceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 4 LFSYWRSSCSHRVRIGLNLKG---LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 4 L~~~~~~~~~~~vr~~l~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
.|+.++|+.|+...=.+...- -.+....++.... ....++.+...-..+|+++ .+|..+
T Consensus 21 ~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 21 EFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 345678888886554443211 1233444442210 0012343334455689876 567543
No 230
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=21.66 E-value=2.4e+02 Score=18.38 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=30.7
Q ss_pred cccCCCchhHHHHHHHHhcCCc----ceEEEcccCCCCCCchhhhhcCCCCCcceEE--eCCEEe
Q 029352 5 FSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 63 (194)
|+..+|+-|+.+.=.+...--. .....|+.. ..+++....--..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5577899888765555432111 233444432 234555444456789887 677544
No 231
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=21.61 E-value=1.2e+02 Score=22.88 Aligned_cols=57 Identities=19% Similarity=0.050 Sum_probs=35.1
Q ss_pred HHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 19 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
.+...|+++++..+.+.+-....+-|.--+-.+-+||-..|+..+. +..+.+.|...
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~ 264 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPL 264 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHH
Confidence 4556799999998885442222333433345678899997776653 34565555443
No 232
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=21.52 E-value=1.4e+02 Score=19.08 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=20.5
Q ss_pred cccCCCchhHHHHHHHHhcCCcceEEE
Q 029352 5 FSYWRSSCSHRVRIGLNLKGLEYEYKA 31 (194)
Q Consensus 5 ~~~~~~~~~~~vr~~l~~~gi~~~~~~ 31 (194)
......|...-++.+++++|||++..+
T Consensus 61 Vr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 61 VRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred ECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 334557788888888889999888764
No 233
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=21.50 E-value=2.8e+02 Score=19.95 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=37.0
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCchhHHHHHHHHhcChhhhhhCC
Q 029352 142 ADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAAP 185 (194)
Q Consensus 142 aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 185 (194)
+|-.+-.++...+..+..+-+..-.+..|.+.+.++|.+.+.+.
T Consensus 141 ~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~ 184 (187)
T KOG0034|consen 141 SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMT 184 (187)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcC
Confidence 67777778888777788888889999999999999999887653
No 234
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=20.43 E-value=59 Score=24.81 Aligned_cols=57 Identities=9% Similarity=-0.147 Sum_probs=34.4
Q ss_pred HHHhcCCcceEEEcccCCCCCCchhhhhcCCCCCcceEEeCCEEe----ecHHHHHHHHHh
Q 029352 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV----SDSFAILMYLEE 75 (194)
Q Consensus 19 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l----~es~~I~~yL~~ 75 (194)
+++..|++++...+.+.+-....+-|.-.+..+-+||-..++..+ .....|.+.|.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~ 271 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYD 271 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHH
Confidence 456789999999887543222233344344567789998777555 333455555443
No 235
>PRK06852 aldolase; Validated
Probab=20.32 E-value=2e+02 Score=22.55 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=32.6
Q ss_pred HhcCCcceEEEcccCCCCCCchhhhhcCCC-CCcceEEeCCEEeecHHHHHHHHHhh
Q 029352 21 NLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 21 ~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~~I~~yL~~~ 76 (194)
.++|-++-.+......++...+.|....-. |.+||++.+|.+. +...+++.+...
T Consensus 198 aELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~-~~~e~L~~v~~a 253 (304)
T PRK06852 198 ACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST-DPEEFLKQLYEQ 253 (304)
T ss_pred HHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC-CHHHHHHHHHHH
Confidence 356666655555422111123455544433 4899999999777 557778777644
No 236
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=20.26 E-value=1.3e+02 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=16.9
Q ss_pred eeecccCCCchhHHHHHHHHhc
Q 029352 2 LKLFSYWRSSCSHRVRIGLNLK 23 (194)
Q Consensus 2 ~~L~~~~~~~~~~~vr~~l~~~ 23 (194)
+.+|..+.||||++..--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 4567788899999987766653
Done!