BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029353
MLMTSSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSS
ENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF
PRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEWKGKPFPFSKGCS
FYKLEVVNGKRQIT

High Scoring Gene Products

Symbol, full name Information P value
AT1G71480 protein from Arabidopsis thaliana 5.8e-34
AT5G41470 protein from Arabidopsis thaliana 2.0e-15

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029353
        (194 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2825304 - symbol:AT1G71480 species:3702 "Arabi...   369  5.8e-34   1
TAIR|locus:2177906 - symbol:AT5G41470 "AT5G41470" species...   194  2.0e-15   1


>TAIR|locus:2825304 [details] [associations]
            symbol:AT1G71480 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006606 "protein import into nucleus"
            evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0008565
            "protein transporter activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] InterPro:IPR002075 Pfam:PF02136 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006810 EMBL:AC016163 GO:GO:0009535
            UniGene:At.43507 UniGene:At.75242 EMBL:BT010641 EMBL:AK175810
            EMBL:AK175869 EMBL:AK176645 EMBL:AK176822 EMBL:AK176871
            EMBL:AK316764 IPI:IPI00540601 RefSeq:NP_177304.1
            ProteinModelPortal:Q9C9I5 SMR:Q9C9I5 IntAct:Q9C9I5 STRING:Q9C9I5
            PRIDE:Q9C9I5 EnsemblPlants:AT1G71480.1 GeneID:843489
            KEGG:ath:AT1G71480 TAIR:At1g71480 eggNOG:NOG300686
            HOGENOM:HOG000243032 InParanoid:Q9C9I5 OMA:CVEPAIK PhylomeDB:Q9C9I5
            ArrayExpress:Q9C9I5 Genevestigator:Q9C9I5 Uniprot:Q9C9I5
        Length = 216

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/101 (68%), Positives = 78/101 (77%)

Query:    93 FYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLXXXXXXXXXXXXXLQFVIDDI 152
             FYA +N  DL+SV +LIA DCVYEDL+F  PF+GRKA L             LQFVIDDI
Sbjct:    78 FYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFGKFIESTSTDLQFVIDDI 137

Query:   153 SAEDSSAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQI 193
             S EDSSAVGV+WHLEWKGK FPFSKGCSFY+LEV++GKRQI
Sbjct:   138 STEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQI 178


>TAIR|locus:2177906 [details] [associations]
            symbol:AT5G41470 "AT5G41470" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 InterPro:IPR009959
            Pfam:PF12680 IPI:IPI00544065 RefSeq:NP_198962.2 UniGene:At.55297
            ProteinModelPortal:F4JYE8 EnsemblPlants:AT5G41470.1 GeneID:834148
            KEGG:ath:AT5G41470 OMA:MGQNVKF Uniprot:F4JYE8
        Length = 277

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 32/102 (31%), Positives = 56/102 (54%)

Query:    92 RFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLXXXXXXXXXXXXXLQFVIDD 151
             +FY+ IN ++   +   I+ DC  +D  FP+PF G++  +             ++F +++
Sbjct:    81 KFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEAMEFFEELVKSMGQNVKFCVEN 140

Query:   152 ISAEDSSAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQI 193
             +   D  +  V WHLEWKG+  PF++GCSFY+  +  G R +
Sbjct:   141 VCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEF-IDEGGRLV 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       148   0.00068  104 3  11 22  0.47    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.50u 0.15s 13.65t   Elapsed:  00:00:01
  Total cpu time:  13.50u 0.15s 13.65t   Elapsed:  00:00:01
  Start:  Fri May 10 16:43:26 2013   End:  Fri May 10 16:43:27 2013

Back to top