BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029353
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P00947|SDIS_COMTE Steroid Delta-isomerase OS=Comamonas testosteroni GN=ksi PE=1 SV=2
          Length = 125

 Score = 35.8 bits (81), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           VV+R+ A +N  DL  +  L ADD   ED +   P  G  A  +F+   S  +   ++  
Sbjct: 10  VVQRYVAALNAGDLDGIVALFADDATVEDPVGSEPRSGTAAIREFYAN-SLKLPLAVELT 68

Query: 149 IDDISAEDSSAVGVTWHLEWKGK 171
            +  +  + +A   T   E++G+
Sbjct: 69  QEVRAVANEAAFAFTVSFEYQGR 91


>sp|A5F5F3|YGFZ_VIBC3 tRNA-modifying protein YgfZ OS=Vibrio cholerae serotype O1 (strain
           ATCC 39541 / Ogawa 395 / O395) GN=VC0395_A2049 PE=3 SV=1
          Length = 323

 Score = 35.0 bits (79), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 10  SSLRTSPSSLLPCLN-QTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVD 68
           +++R SP   L  +N +    Y N+    H   +  TR  +     +   +++N      
Sbjct: 147 TAVRMSPQRWLLLVNAEQAEQYVNAWQGLHVEQSLWTRMDIEEAVPVVTQTAQNEH---- 202

Query: 69  VASPLPTTSNVDGDDG---------GGAVVVRRFYAGINGRDLASVE-----ELIADDCV 114
               +P   NV   DG         G   V R  Y GIN R +  V+      L  D+ V
Sbjct: 203 ----IPQALNVQAVDGISFTKGCYTGQETVARAKYRGINKRAMYIVKGNLSAPLSQDEPV 258

Query: 115 YEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEWKGKPFP 174
             +      +    A L +++ F+DSI+  L  + +D+  +    +       W  +P P
Sbjct: 259 VLERAVGENWRSAGALLTYYR-FTDSIAIGLIVLPNDLEHDVELRLAAQPDTRWHIQPLP 317

Query: 175 FS 176
           +S
Sbjct: 318 YS 319


>sp|Q03735|NAB6_YEAST RNA-binding protein NAB6 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=NAB6 PE=1 SV=1
          Length = 1134

 Score = 30.8 bits (68), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 42  TPTTRKRLAPLSKLRIS-SSENNRT-AVDVASPLPTTSNV---DGDDGGGAVVVRRFYA 95
           TPT  +    LS ++IS ++EN+R  + D+ SPLP   ++   D +   GA++ ++  A
Sbjct: 550 TPTIEEHSTHLSNVKISKTTENSRQFSQDIPSPLPLNEHMFMNDSNQSNGAIIPQQLIA 608


>sp|P40814|T3MO_SALTY Type III restriction-modification system StyLTI enzyme mod
           OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
           700720) GN=mod PE=3 SV=2
          Length = 652

 Score = 30.4 bits (67), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 96  GINGRDLASVEELIADDC--VYEDLIFPRPFLGRKATLD---FFKKFSDSISSDLQFVID 150
           G+N  +LA ++ +        +   ++PR FL RK   D    F    D+  ++L+ ++D
Sbjct: 163 GLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLKLMMD 222

Query: 151 DISAEDSSAVGVTW 164
           +I  E      V W
Sbjct: 223 EIFGEGGFVTNVMW 236


>sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain
           CCS1) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 30.0 bits (66), Expect = 8.9,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 34  TISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRF 93
           T+  +F ST   RK L+  +    +S    R  VDVA        V  DD G    ++  
Sbjct: 765 TVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQ----DCIVRMDDCGTENTIKAE 820

Query: 94  YAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS 153
            A  +G  +AS+ E I               LGR A  D F   +D I      +ID+  
Sbjct: 821 AAVNDGEVVASLAERI---------------LGRTAGEDVFIPGTDEIIVAKGELIDERK 865

Query: 154 AEDSSAVGVT 163
           A+   A GVT
Sbjct: 866 ADAVEAAGVT 875


>sp|Q0AF54|RPOC_NITEC DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas eutropha
           (strain C91) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 30.0 bits (66), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 35  ISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFY 94
           I  +FIST   RK LA  +    +S    R  VDV   L    N  G DGG  VV++   
Sbjct: 780 ILQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVIIENDCGTDGG--VVMKALV 837

Query: 95  AGIN 98
            G N
Sbjct: 838 EGGN 841


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,575,237
Number of Sequences: 539616
Number of extensions: 2842964
Number of successful extensions: 8580
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 8409
Number of HSP's gapped (non-prelim): 240
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)