Query 029353
Match_columns 194
No_of_seqs 139 out of 1083
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12680 SnoaL_2: SnoaL-like d 99.8 8.5E-18 1.8E-22 119.7 12.2 96 90-192 1-100 (102)
2 TIGR02096 conserved hypothetic 99.7 1.4E-16 3.1E-21 120.3 13.8 101 88-192 2-113 (129)
3 PF07366 SnoaL: SnoaL-like pol 99.7 4.7E-16 1E-20 117.9 12.8 98 89-192 3-111 (126)
4 cd00781 ketosteroid_isomerase 99.7 6.9E-16 1.5E-20 115.8 12.6 105 84-192 3-109 (122)
5 PRK08241 RNA polymerase factor 99.6 5.8E-14 1.3E-18 123.5 14.1 105 82-192 212-317 (339)
6 TIGR02960 SigX5 RNA polymerase 99.5 5E-13 1.1E-17 116.5 13.9 103 84-192 204-307 (324)
7 PF07858 LEH: Limonene-1,2-epo 99.4 1.8E-12 4E-17 100.4 11.4 103 85-193 2-109 (125)
8 COG3631 Ketosteroid isomerase- 99.4 1.4E-11 3E-16 96.4 12.1 105 83-192 3-115 (133)
9 TIGR02246 conserved hypothetic 99.2 3.7E-10 7.9E-15 84.5 13.7 106 85-194 5-119 (128)
10 PF13474 SnoaL_3: SnoaL-like d 99.0 6.7E-09 1.5E-13 76.6 12.3 103 87-194 2-112 (121)
11 COG4922 Uncharacterized protei 99.0 3.2E-09 7E-14 80.6 10.6 102 83-192 4-107 (129)
12 COG5485 Predicted ester cyclas 99.0 3.5E-09 7.5E-14 81.3 8.9 96 87-192 9-115 (131)
13 COG4319 Ketosteroid isomerase 99.0 1.4E-08 3E-13 79.7 12.0 107 84-194 10-125 (137)
14 PRK09636 RNA polymerase sigma 99.0 1.2E-08 2.7E-13 88.4 13.1 99 84-192 171-275 (293)
15 PF14534 DUF4440: Domain of un 98.9 1.5E-08 3.2E-13 72.7 10.9 100 87-193 2-107 (107)
16 cd00531 NTF2_like Nuclear tran 98.7 7E-07 1.5E-11 64.4 12.8 106 87-193 2-116 (124)
17 PF08332 CaMKII_AD: Calcium/ca 98.6 9.1E-07 2E-11 68.9 12.6 107 85-194 4-120 (128)
18 TIGR02957 SigX4 RNA polymerase 98.6 8.1E-07 1.7E-11 76.8 13.6 97 84-192 164-266 (281)
19 PF10184 DUF2358: Uncharacteri 98.5 4.8E-06 1E-10 63.1 12.9 88 99-192 16-111 (113)
20 COG4308 LimA Limonene-1,2-epox 98.5 9.1E-07 2E-11 67.8 8.4 104 84-193 6-112 (130)
21 COG4538 Uncharacterized conser 98.4 7.4E-06 1.6E-10 60.8 11.4 100 85-192 4-105 (112)
22 PF13577 SnoaL_4: SnoaL-like d 98.4 1.1E-05 2.3E-10 60.1 12.5 107 85-194 8-124 (127)
23 PRK09635 sigI RNA polymerase s 98.3 6E-06 1.3E-10 72.1 10.5 95 84-192 174-269 (290)
24 PF12893 Lumazine_bd_2: Putati 98.2 2.1E-05 4.5E-10 59.1 11.0 104 85-194 5-111 (116)
25 PF07080 DUF1348: Protein of u 98.1 0.00011 2.4E-09 57.5 12.1 102 85-192 11-115 (143)
26 COG4875 Uncharacterized protei 98.0 0.00017 3.7E-09 56.0 12.2 109 82-194 35-145 (156)
27 PF02136 NTF2: Nuclear transpo 98.0 0.00014 3E-09 54.0 10.7 104 86-193 2-111 (118)
28 PF03284 PHZA_PHZB: Phenazine 97.5 0.0017 3.6E-08 51.6 10.9 103 86-193 20-134 (162)
29 PRK10069 3-phenylpropionate di 97.0 0.039 8.5E-07 45.0 13.9 54 85-138 21-94 (183)
30 cd00667 ring_hydroxylating_dio 96.9 0.037 8E-07 43.5 12.8 55 85-139 5-74 (160)
31 cd00780 NTF2 Nuclear transport 96.9 0.02 4.4E-07 42.9 10.8 100 86-193 6-110 (119)
32 PF12870 Lumazine_bd: Lumazine 96.9 0.011 2.3E-07 42.7 8.9 100 84-193 7-110 (111)
33 PF11533 DUF3225: Protein of u 96.8 0.036 7.9E-07 43.0 11.2 80 86-166 12-91 (125)
34 PF05223 MecA_N: NTF2-like N-t 96.3 0.052 1.1E-06 41.0 9.2 97 86-193 3-103 (118)
35 COG3558 Uncharacterized protei 91.8 0.0096 2.1E-07 46.2 -3.8 95 86-185 14-111 (154)
36 COG4460 Uncharacterized protei 87.9 2.9 6.3E-05 32.1 6.8 73 89-164 15-89 (130)
37 TIGR03231 anthran_1_2_B anthra 86.5 15 0.00032 29.2 14.2 32 88-119 3-34 (155)
38 KOG4353 RNA export factor NXT1 85.0 10 0.00022 29.8 8.6 48 86-136 16-63 (139)
39 PLN02382 probable sucrose-phos 82.7 13 0.00029 34.1 10.0 75 90-167 290-378 (413)
40 TIGR03232 benzo_1_2_benB benzo 77.5 34 0.00073 27.1 11.3 25 95-119 10-34 (155)
41 PF00866 Ring_hydroxyl_B: Ring 77.3 32 0.00069 26.7 11.1 98 95-193 4-130 (145)
42 KOG4457 Uncharacterized conser 76.2 10 0.00022 31.2 6.2 85 107-192 57-162 (202)
43 PRK00183 hypothetical protein; 75.1 28 0.0006 28.0 8.5 89 85-192 29-124 (157)
44 PF07107 WI12: Wound-induced p 74.3 11 0.00023 28.7 5.5 41 144-192 13-53 (109)
45 PRK01617 hypothetical protein; 74.2 43 0.00093 26.8 9.4 91 84-193 28-126 (154)
46 COG5517 Small subunit of pheny 73.9 4.4 9.4E-05 32.8 3.5 28 92-119 16-43 (164)
47 PRK01752 hypothetical protein; 59.7 47 0.001 26.7 6.9 91 84-193 31-126 (156)
48 PF11453 DUF2950: Protein of u 56.7 26 0.00056 30.7 5.2 50 85-137 6-55 (271)
49 KOG0116 RasGAP SH3 binding pro 45.0 2E+02 0.0044 26.8 9.4 65 86-154 17-84 (419)
50 PRK01842 hypothetical protein; 43.7 1.6E+02 0.0035 23.5 7.5 89 84-192 47-141 (149)
51 PRK02250 hypothetical protein; 39.8 1.6E+02 0.0035 23.7 7.2 91 85-192 28-121 (166)
52 PF04280 Tim44: Tim44-like dom 38.8 17 0.00037 27.7 1.3 28 86-113 24-51 (147)
53 KOG3763 mRNA export factor TAP 36.2 76 0.0016 30.7 5.3 31 86-116 341-371 (585)
54 PF15063 TC1: Thyroid cancer p 33.7 23 0.00049 25.3 1.1 17 3-19 1-17 (79)
55 KOG2104 Nuclear transport fact 31.3 1E+02 0.0022 23.9 4.4 48 86-136 10-57 (126)
56 COG2346 Truncated hemoglobins 31.1 97 0.0021 24.3 4.3 47 81-140 14-61 (133)
57 PF02982 Scytalone_dh: Scytalo 26.0 73 0.0016 25.8 2.9 50 86-135 10-62 (160)
58 PF06020 Roughex: Drosophila r 25.5 48 0.001 29.5 1.9 49 85-138 10-58 (334)
59 COG3012 Uncharacterized protei 24.7 3E+02 0.0064 22.1 6.0 91 86-192 30-123 (151)
60 COG0268 RpsT Ribosomal protein 20.7 1.5E+02 0.0032 21.7 3.4 26 86-111 28-53 (88)
61 PRK13720 modulator of post-seg 20.4 35 0.00076 23.4 0.1 12 16-27 6-17 (70)
No 1
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.77 E-value=8.5e-18 Score=119.73 Aligned_cols=96 Identities=38% Similarity=0.714 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEEEEe-
Q 029353 90 VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEW- 168 (194)
Q Consensus 90 Vr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~~e~- 168 (194)
|++||++|+++|++++.++|+||++|++| .+++.|+++++++++.++.. +++.++++..++.+| +.|+++|+...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g-d~v~~~~~~~~~ 76 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDP--GGTLRGREAIREFFEEFFES-FPDIRFEIHDIFADG-DRVVVEWTVTGT 76 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEET--TSEEESHHHHHHHHHHHHHH-EEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeC--CCcccCHHHHHHHHHHHHhc-CCceEEEEEEEEEcC-CEEEEEEEEEEE
Confidence 68999999999999999999999999998 34699999999999998874 588999999999988 88888888864
Q ss_pred ---CCeeEeeeceEEEEEEEeeCCeEE
Q 029353 169 ---KGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 169 ---~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
+|+++.+ +++++|+| +||||+
T Consensus 77 ~~~~g~~~~~-~~~~~~~~--~dgkI~ 100 (102)
T PF12680_consen 77 TPPTGQPISF-RGCSVFRF--EDGKIV 100 (102)
T ss_dssp ETTTSCEEEE-EEEEEEEE--ETTEEE
T ss_pred EcCCCCEEEE-EEEEEEEE--ECCEEE
Confidence 6999999 89999999 899996
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.73 E-value=1.4e-16 Score=120.32 Aligned_cols=101 Identities=21% Similarity=0.416 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEEEE
Q 029353 88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLE 167 (194)
Q Consensus 88 ~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~~e 167 (194)
+++++||++|+++|++++.++|+||++|++|..+.+..|+++++++++.++.. .+++++++..++..+++.|+++|+++
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~~~ 80 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTA-FPDLLVDVVVCRNDEGVRVAAEWTVH 80 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHh-CchhhceeEEEEecCCcEEEEEEEEe
Confidence 68999999999999999999999999999988776778899999999988765 68999999888877645888888763
Q ss_pred -----------eCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 168 -----------WKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 168 -----------~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
..|+++.+ +++++|+| +||||+
T Consensus 81 g~~~g~~~g~~~~g~~~~~-~~~~~~~~--~~gkI~ 113 (129)
T TIGR02096 81 GTYRTAFLGLPASGKTYSI-RGVTFFVF--DDGKIK 113 (129)
T ss_pred eeeccccCCCCCCCCEEEe-eeeEEEEE--eCCEEE
Confidence 25899999 89999999 899986
No 3
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.69 E-value=4.7e-16 Score=117.88 Aligned_cols=98 Identities=35% Similarity=0.576 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEEEEe
Q 029353 89 VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEW 168 (194)
Q Consensus 89 vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~~e~ 168 (194)
+++.|.++||++|++.+.++++||++++++.. ++..|++++++++..++. .+||++++++.++++| +.|+++|.++.
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~-~~~~G~~~~~~~~~~~~~-afPD~~~~i~~~~~~g-d~v~~~~~~~G 79 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGP-GPPVGREGFKEFLKELRA-AFPDLRFEIEDVVAEG-DRVAVRWTFTG 79 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTT-TEEEHHHHHHHHHHHHHH-HSTTTEEEEEEEEEET-TEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCC-CCCCCHHHHHHHHHHHHH-HCCCCEEEEEEEEEEC-CEEEEEEEEEE
Confidence 34445569999999999999999999999876 688999999999998876 5899999999999999 99999887722
Q ss_pred -----------CCeeEeeeceEEEEEEEeeCCeEE
Q 029353 169 -----------KGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 169 -----------~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
.||++.+ .++++|++ +||||.
T Consensus 80 th~g~~~g~~ptgk~v~~-~~~~~~~~--~~gkI~ 111 (126)
T PF07366_consen 80 THTGEFMGIPPTGKPVEF-RGMSIFRF--EDGKIV 111 (126)
T ss_dssp EESSEBTTBE-TTEEEEE-EEEEEEEE--ETTEEE
T ss_pred eecCCcCCcCCCCCEEEE-EEEEEEEE--ECCEEE
Confidence 4899999 79999999 899996
No 4
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.68 E-value=6.9e-16 Score=115.84 Aligned_cols=105 Identities=20% Similarity=0.368 Sum_probs=85.8
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVT 163 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~ 163 (194)
.++++++++|+++|+++|++++.+||+||++|++|..++++.|++++++++..++.. .+++++........| +.+++.
T Consensus 3 ~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~~g-~~~~~~ 80 (122)
T cd00781 3 QEMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGG-AKRLELTGPVRASHG-GEAAFA 80 (122)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhcc-CceEEecCceeeecC-CEEEEE
Confidence 468899999999999999999999999999999987666899999999999987654 456666555555555 566665
Q ss_pred EE--EEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 164 WH--LEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 164 ~~--~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
|. ....|+++.+ +++++|+|+. ||||+
T Consensus 81 ~~~~~~~~g~~~~~-~~~~v~~~~~-dGkI~ 109 (122)
T cd00781 81 FRVEFEWEGQPCVV-RVIDVMRFDA-DGRIV 109 (122)
T ss_pred EEEEEEeCCceEEE-EEEEEEEECC-CccCh
Confidence 54 5667999999 7999999942 79985
No 5
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=99.56 E-value=5.8e-14 Score=123.51 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=86.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhc-CCCcEEEEEEEEecCCCeE
Q 029353 82 DDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSI-SSDLQFVIDDISAEDSSAV 160 (194)
Q Consensus 82 ~~~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~-~~d~~~~i~~via~G~d~V 160 (194)
....+.+++++||+||++||++++.+|++||++|++|+.++++.|++++++||..++... ++++++ ....++| +.|
T Consensus 212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~--~~~~~~g-~~v 288 (339)
T PRK08241 212 DDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRL--VPTRANG-QPA 288 (339)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEE--EEeecCC-CeE
Confidence 446789999999999999999999999999999999998888999999999999864322 344454 4446666 666
Q ss_pred EEEEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 161 GVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 161 av~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
++.+.....|+.+.. .+|++|++ +||||+
T Consensus 289 ~~~~~~~~~g~~~~~-~~v~v~~v--~dGkI~ 317 (339)
T PRK08241 289 FAQYMRDPDGGGHRP-WALHVLEL--RGGRIA 317 (339)
T ss_pred EEEEEEcCCCCeeec-ceEEEEEE--eCCEEE
Confidence 666554556888999 89999999 899996
No 6
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=99.49 E-value=5e-13 Score=116.48 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhh-hhcCCCcEEEEEEEEecCCCeEEE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFS-DSISSDLQFVIDDISAEDSSAVGV 162 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~-~~~~~d~~~~i~~via~G~d~Vav 162 (194)
..+.+++++||++|++||++++.+|++||++|++|+..+++.|++++..+|..++ ...++++++. ....+| +.+++
T Consensus 204 ~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~--~~~~~g-~~~~v 280 (324)
T TIGR02960 204 PEEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLL--PTIANG-QPAAA 280 (324)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCCceeEE--EeeecC-CceEE
Confidence 4578999999999999999999999999999999988889999999999999873 2334566654 455777 66666
Q ss_pred EEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 163 TWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 163 ~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
.+.....|+.+.. .+|++|+| +||||+
T Consensus 281 ~~~~~~~~~~~~~-~~v~~~~~--~dGkI~ 307 (324)
T TIGR02960 281 MYMRRPDAERHTA-FQLHVLEI--RGGRIT 307 (324)
T ss_pred EEEEcCCCCeeee-eEEEEEEE--cCCcEE
Confidence 6655556788888 79999999 799997
No 7
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=99.43 E-value=1.8e-12 Score=100.39 Aligned_cols=103 Identities=29% Similarity=0.520 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHhCCCHH-HHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEE-
Q 029353 85 GGAVVVRRFYAGINGRDLA-SVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV- 162 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~d-al~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav- 162 (194)
++.++|++|+++|...|++ ++..|++||++|++.+++ +.+|+++++++++.+.. ....++++++.+.++| +.|..
T Consensus 2 ~~~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp-~i~G~~~~~~~l~~~~~-~~~~~e~~i~~iaadg-~~VltE 78 (125)
T PF07858_consen 2 TPEEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLP-PIRGRDAIRAFLRGFLD-SLSGFEFDIHRIAADG-DVVLTE 78 (125)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTE-EEESHHHHHHHHHCCHC-CCEEEEEEEEEEEEET-TEEEEE
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCC-CcccHHHHHHHHHHHhc-ccceeEEEEEEEeecC-CEEEEE
Confidence 4789999999999999976 567889999999999987 79999999999997744 3467889999999988 77766
Q ss_pred EEEE-Ee--CCeeEeeeceEEEEEEEeeCCeEEE
Q 029353 163 TWHL-EW--KGKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 163 ~~~~-e~--~Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
|... .. ++..+.+ ..|-+|++ +||||+.
T Consensus 79 R~D~l~~~dG~~~~~~-~V~GvfEv--~dGkI~~ 109 (125)
T PF07858_consen 79 RTDVLRFADGPLRIQF-PVCGVFEV--RDGKITL 109 (125)
T ss_dssp EEEEEEETTTTEEEEE-EEEEEEEE--ETTEEEE
T ss_pred eEeeeeeecCCeEEEE-EEEEEEEE--ECCEEEE
Confidence 4333 44 3488999 79999999 8999974
No 8
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=96.44 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=83.6
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcC----CCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCC
Q 029353 83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL----IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSS 158 (194)
Q Consensus 83 ~~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp----~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d 158 (194)
.+++.++|+++|++|.+||.+.+.+|+++|++|.-| ..+....|++..++++...- ..+....++.+.++.+| |
T Consensus 3 ~~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g-D 80 (133)
T COG3631 3 EMDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLP-RLIEDGRFTVETVYVSG-D 80 (133)
T ss_pred cchhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhCh-hhcccccccceEEEEcC-C
Confidence 467899999999999999999999999999999933 33444557777778887544 44567889999999998 5
Q ss_pred eEE-EEEEE---EeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 159 AVG-VTWHL---EWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 159 ~Va-v~~~~---e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
.++ +.+.. ...|++++. +.++++++ +||||+
T Consensus 81 ~~~~v~~~~~~~~~~G~~~~~-~~~~v~~v--rdGrI~ 115 (133)
T COG3631 81 PVGAVFRTRGRVSRTGKPYEN-RYAFVIRV--RDGRIT 115 (133)
T ss_pred ceEEEEEecCcccccCceeec-ceEEEEEE--eCCEEE
Confidence 444 44433 346999999 89999999 999996
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=99.24 E-value=3.7e-10 Score=84.53 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCC--cEEEEEEEEecCCCeEEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD--LQFVIDDISAEDSSAVGV 162 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d--~~~~i~~via~G~d~Vav 162 (194)
+.++++.+|+++|+++|++++.++|++|++|..++ ++...|+++++++|+.++...... +++++..+...|++.+.+
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~-g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~ 83 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVP-GQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV 83 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCC-CCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence 47889999999999999999999999999998544 347899999999999877654333 555555555555344444
Q ss_pred E--EEEEeC-Cee----EeeeceEEEEEEEeeCCeEEEC
Q 029353 163 T--WHLEWK-GKP----FPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 163 ~--~~~e~~-Gk~----i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
. +++... |.. ... +...+|+- .||+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~t~~~~~--~~g~W~I~ 119 (128)
T TIGR02246 84 HAIQTITAPGKGRARPDAAV-RLTFVAVK--RDGRWLLA 119 (128)
T ss_pred EEEEEEEcCCCCCCCCCcce-EEEEEEEe--eCCeEEEE
Confidence 3 333222 222 122 23345555 68998884
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=99.03 E-value=6.7e-09 Score=76.59 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEE--ecCCCeEEEEE
Q 029353 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSAVGVTW 164 (194)
Q Consensus 87 ~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~vi--a~G~d~Vav~~ 164 (194)
.+++++|+++|+.+|++++.++++||+++.++..+....|+++++++++..+... +.+.+++.++. ..+ +.+.+.+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~-~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESF-RPISIEFEDVQVSVSG-DVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTH-SEEEEEEEEEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhC-ceEEEEEEEEEEEECC-CEEEEEE
Confidence 5789999999999999999999999999998776667789999999999988765 66777776543 333 5555543
Q ss_pred EEE----eCCee--EeeeceEEEEEEEeeCCeEEEC
Q 029353 165 HLE----WKGKP--FPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 165 ~~e----~~Gk~--i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
... .+|+. ... +...+|+- +||.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~-r~t~v~~k--~~~~Wki~ 112 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRG-RATFVFRK--EDGGWKIV 112 (121)
T ss_dssp EEEEEEECTTCEEEEEE-EEEEEEEE--ETTEEEEE
T ss_pred EEEEEEecCCccceeeE-EEEEEEEE--ECCEEEEE
Confidence 332 24444 344 57788888 89999984
No 11
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.03 E-value=3.2e-09 Score=80.64 Aligned_cols=102 Identities=17% Similarity=0.301 Sum_probs=85.4
Q ss_pred CCcHHHHHHHHHH-HHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEE
Q 029353 83 DGGGAVVVRRFYA-GINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVG 161 (194)
Q Consensus 83 ~~~~~~vVr~fye-A~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Va 161 (194)
...|++++-.||. ++++|.++...+++.|....|+|..+ .|++++.+||..+|.. .|..+..+...+++| |.|.
T Consensus 4 ~~~N~~~v~~~y~~~~~~g~veka~a~~vd~YiQHnp~vp---dGk~~fv~fFt~ffk~-~P~~~~kiVr~iadG-dLV~ 78 (129)
T COG4922 4 LHANKQVVIQFYRTLFEAGEVEKADAYLVDRYIQHNPMVP---DGKDGFVRFFTEFFKE-KPRISTKIVRVIADG-DLVT 78 (129)
T ss_pred hhhhHHHHHHHHHHHHHCCCHHHhhhhhhhHHHhcCCCCC---CchHHHHHHHHHHHHh-CccccceeeEEeccC-CEEE
Confidence 4568889999997 99999999999999999999998764 5999999999999975 588888899999999 9999
Q ss_pred EEEEEEeCC-eeEeeeceEEEEEEEeeCCeEE
Q 029353 162 VTWHLEWKG-KPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 162 v~~~~e~~G-k~i~~t~g~~~fr~~~~dGKI~ 192 (194)
++.+-.+++ -.... --+++||+ .||||+
T Consensus 79 vh~hqt~~~pg~~~~-v~~DtfR~--ddgkiv 107 (129)
T COG4922 79 VHYHQTVSEPGSYTT-VTFDTFRI--DDGKIV 107 (129)
T ss_pred EEEeeeeCCCCccee-EEEEEEEe--eCCcee
Confidence 999887754 22223 25799999 789875
No 12
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=98.98 E-value=3.5e-09 Score=81.30 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEEE
Q 029353 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHL 166 (194)
Q Consensus 87 ~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~~ 166 (194)
.+.+++|++..|.++++.+....+.++.+. +...|.++++++....|.+ +||++|+++.+++++ +.||.+.++
T Consensus 9 ~~~y~Ay~d~ln~q~~~~l~~fv~~~v~~n-----g~~~glsgyr~ml~~df~a-iPdl~f~ie~lvae~-~~vaarl~F 81 (131)
T COG5485 9 IDRYRAYLDCLNRQAWDELGSFVDGNVMHN-----GRLQGLSGYREMLVRDFSA-IPDLSFEIERLVAEG-DRVAARLTF 81 (131)
T ss_pred HHHHHHHHHhhhhhhhhhcccCCcCeeeeC-----CceechHHHHHHHHhhHhh-CCCcceEEEEEeecC-CceEEEEEE
Confidence 378999999999999999988776665553 2456999999999988865 699999999999999 999998887
Q ss_pred E-----------eCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 167 E-----------WKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 167 e-----------~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
. .+||++.+ -...+|+| .||||.
T Consensus 82 dctp~G~i~Gip~nGkrV~F-se~vfy~f--~~~KI~ 115 (131)
T COG5485 82 DCTPSGEIMGIPPNGKRVRF-SENVFYEF--ENGKIV 115 (131)
T ss_pred ccCcCceEeccCCCCcEEEe-ehhhhhhh--cCCeEE
Confidence 2 25999999 49999999 899996
No 13
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=98.96 E-value=1.4e-08 Score=79.67 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=82.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEE--ecCCCeEE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSAVG 161 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~vi--a~G~d~Va 161 (194)
...++++..|-+|++++|+++++++|+||+++-+|+ +-+..|++++++.|+..|........|+.+++. +.| |.+-
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~-~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-D~a~ 87 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPP-GLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-DVAF 87 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCC-CCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-CEEE
Confidence 346788888999999999999999999999999887 447899999999999998876667888887776 666 5544
Q ss_pred E--EEEEEe---CCee--EeeeceEEEEEEEeeCCeEEEC
Q 029353 162 V--TWHLEW---KGKP--FPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 162 v--~~~~e~---~Gk~--i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
+ .++... +|++ ... +...+||=+. ||+++|+
T Consensus 88 ~~~~~~~~~~~~dg~~~~~~~-Rat~v~rK~~-dg~Wk~~ 125 (137)
T COG4319 88 VTALLLLTGTKKDGPPADLAG-RATYVFRKEA-DGGWKLA 125 (137)
T ss_pred EEEeeeeeccCCCCcchhhee-eeEEEEEEcC-CCCEEEE
Confidence 4 444432 2442 444 6778888874 7788874
No 14
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=98.96 E-value=1.2e-08 Score=88.38 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCC------CCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCC
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI------FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS 157 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~------~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~ 157 (194)
..+.+++++|++|+++||++++.+|++||++|+.++ ..+++.|++++.+++..++....+...+....+..+|+
T Consensus 171 ~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG~ 250 (293)
T PRK09636 171 EEGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNGL 250 (293)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECCc
Confidence 457889999999999999999999999999999532 23568999999999998765433323344445667775
Q ss_pred CeEEEEEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 158 SAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 158 d~Vav~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
..+++. . .|.. .++..+++ +||||+
T Consensus 251 ~a~~~~-~---~~~~----~~~~~~~~--~~g~I~ 275 (293)
T PRK09636 251 PGFVTA-E---ADGE----PQTTALEV--EDGKIV 275 (293)
T ss_pred eeEEEE-e---CCce----EEEEEEEE--ECCEEE
Confidence 555442 1 2332 24566777 799886
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=98.95 E-value=1.5e-08 Score=72.74 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEE--EE
Q 029353 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV--TW 164 (194)
Q Consensus 87 ~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav--~~ 164 (194)
.++.++|.+|++++|++++.++++||+++..+. +...|++++.+.+...+.. ...++++...+...| +.+.+ .+
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~--g~~~~~~~~l~~~~~~~~~-~~~~~~~~~~v~~~g-d~a~~~~~~ 77 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDFVFVGPG--GTILGKEAILAAFKSGFAR-FSSIKFEDVEVRVLG-DTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEEEEEETT--SEEEEHHHHHHHHHHHCEE-EEEEEEEEEEEEEET-TEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCEEEECCC--CCEeCHHHHHHHHhhccCC-CceEEEEEEEEEEEC-CEEEEEEEE
Confidence 578999999999999999999999999998765 3556999999988864322 356777777776666 55554 55
Q ss_pred EEEeC--Cee--EeeeceEEEEEEEeeCCeEEE
Q 029353 165 HLEWK--GKP--FPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 165 ~~e~~--Gk~--i~~t~g~~~fr~~~~dGKI~i 193 (194)
+++.. |++ ... +...+|+- ++|+++|
T Consensus 78 ~~~~~~~g~~~~~~~-~~~~v~~k--~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRG-RFTSVWKK--QDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEE-EEEEEEEE--ETTEEEE
T ss_pred EEEEecCCceEEEEE-EEEEEEEE--eCCEEEC
Confidence 55543 543 455 67788888 7999998
No 16
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.70 E-value=7e-07 Score=64.40 Aligned_cols=106 Identities=23% Similarity=0.193 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC---CCCccCHHHHHHHHHHhhhhcCCCcEE-EEEEEEecCCCe---
Q 029353 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---PRPFLGRKATLDFFKKFSDSISSDLQF-VIDDISAEDSSA--- 159 (194)
Q Consensus 87 ~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~---~g~~~Greair~~~~~~~~~~~~d~~~-~i~~via~G~d~--- 159 (194)
++++.+|+++++++|.+.+..+++||++++.+.. .....|+++++++++.+........++ ....+...+++.
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 5789999999999999999999999999998764 256799999999999765321112232 112222333222
Q ss_pred EEEEEEEEeC--CeeEeeeceEEEEEEEeeCCeEEE
Q 029353 160 VGVTWHLEWK--GKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 160 Vav~~~~e~~--Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
+++.+.+... |..... .+...+++...||.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~w~i 116 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVF-AGGQTFVLRPQGGGGKI 116 (124)
T ss_pred EEEEEEEEEccCCceeEE-EEEEEEEEEEeCCEEEE
Confidence 2224444333 456666 57777777545676666
No 17
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=98.64 E-value=9.1e-07 Score=68.87 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCC-eEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEE--EEecCCCeEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADD-CVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD--ISAEDSSAVG 161 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD-~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~--via~G~d~Va 161 (194)
+..++.+++.+|++.||++...++++|| .++.....+....|.+.++.||..++..-....+..|.. +-.-|++.+.
T Consensus 4 eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~~Ai 83 (128)
T PF08332_consen 4 EIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDNAAI 83 (128)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTTEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCCEEE
Confidence 4567889999999999999999999999 778766777789999999999998887644444444432 2222423433
Q ss_pred E--EEEEEe---CCee--EeeeceEEEEEEEeeCCeEEEC
Q 029353 162 V--TWHLEW---KGKP--FPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 162 v--~~~~e~---~Gk~--i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
. .+.+.+ +|.+ +.. +..-+|+. +||+++|+
T Consensus 84 ~~gvy~f~~~d~~G~~~~~~a-reT~v~~~--~~g~W~iv 120 (128)
T PF08332_consen 84 DAGVYTFQFVDKDGVPRTVQA-RETRVWQK--RDGKWKIV 120 (128)
T ss_dssp EEEEEEEEEESTTSSEEEEEE-EEEEEEEE--ETTEEEEE
T ss_pred EeeEEEEEeecCCCCeeeEEE-eEEEEEEE--eCCeEEEE
Confidence 3 333333 3654 455 67789999 89999995
No 18
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=98.64 E-value=8.1e-07 Score=76.82 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEc------CCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCC
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYED------LIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS 157 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~d------p~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~ 157 (194)
....+++++|.+|+.+||++++.+|++||+++.. |....++.|++.+..|+........++. .......+|.
T Consensus 164 ~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~--~~~~~~vnG~ 241 (281)
T TIGR02957 164 EESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGG--RVDPVDVNGQ 241 (281)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCc--eEEEEEECCC
Confidence 3467899999999999999999999999999995 5555679999999999987654322333 4445567775
Q ss_pred CeEEEEEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 158 SAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 158 d~Vav~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
..+++. .+|+.. .+..+++ +||||+
T Consensus 242 p~~~~~----~~~~~~----~~~~~~~--~~g~I~ 266 (281)
T TIGR02957 242 PAVLVR----IDGKLA----YVVTFAI--EGGGIQ 266 (281)
T ss_pred ceEEEE----eCCcEE----EEEEEEE--ECCEEE
Confidence 554432 145433 4566777 799886
No 19
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=98.50 E-value=4.8e-06 Score=63.06 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=69.0
Q ss_pred CCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHH---HHHhhhhcCCCcEEEEEEEEecCCCeEEEEEEEEe----C-C
Q 029353 99 GRDLASVEELIADDCVYEDLIFPRPFLGRKATLDF---FKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEW----K-G 170 (194)
Q Consensus 99 ~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~---~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~~e~----~-G 170 (194)
.++.+ .++|+|||+|.||.. .+.|++.++.. ++.+....+.+.++++..+...+++.|.++|++.+ . +
T Consensus 16 ~~~~~--~~iY~~dv~F~Dp~~--~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~~~g~~~l~w~ 91 (113)
T PF10184_consen 16 TGDLD--YSIYDEDVVFIDPIV--SFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWRLRGVPRLPWR 91 (113)
T ss_pred cCCCC--hhhcCCCeEEECCCC--ceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEEEEEEeCCCcC
Confidence 44444 459999999999986 68999999988 55333325678999999999888558888999954 1 5
Q ss_pred eeEeeeceEEEEEEEeeCCeEE
Q 029353 171 KPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 171 k~i~~t~g~~~fr~~~~dGKI~ 192 (194)
.++.+ .|.+.|++++ ||||.
T Consensus 92 p~~~~-~G~S~~~ln~-~g~I~ 111 (113)
T PF10184_consen 92 PRISF-DGTSTYTLNS-DGLIY 111 (113)
T ss_pred CcEEE-EEEEEEEECC-CCcEE
Confidence 67888 6999999995 89874
No 20
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.48 E-value=9.1e-07 Score=67.80 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=78.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHH-hhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVE-ELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV 162 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~-~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav 162 (194)
.++.++|..|.+|+..-|.++.. .+..+|-+|.+++.+ ..+|+++.+++++..|... -.++|.|+.+.++| ..|..
T Consensus 6 ~~pi~~V~aF~aA~~~~d~~~avr~~~~~d~v~~n~gis-~i~G~~~~ia~l~~~~~~~-~~~ef~I~riAadg-~~Vlt 82 (130)
T COG4308 6 PEPIRTVEAFLAALQEDDGDAAVRRLGTPDTVYNNVGIS-TIHGPAETIALLRPRMAGI-LGFEFKILRIAADG-GAVLT 82 (130)
T ss_pred CCcHHHHHHHHHHHHhcCccHHHHHhcCCCeeeccCCcc-cccchhhhhhhhccccCCc-ceeEEEEEEEeccc-ceehh
Confidence 45788999999999999987755 555588888888876 7899999999999755543 46889999998888 55543
Q ss_pred -EEEEEeCCe-eEeeeceEEEEEEEeeCCeEEE
Q 029353 163 -TWHLEWKGK-PFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 163 -~~~~e~~Gk-~i~~t~g~~~fr~~~~dGKI~i 193 (194)
+......|. -..+ ..|-+|++ +||||..
T Consensus 83 ER~D~~~~g~~~~~~-~V~GvfEV--~~~rI~~ 112 (130)
T COG4308 83 ERLDARIDGPLWVQF-WVCGVFEV--EDGRIVL 112 (130)
T ss_pred hhhhhhccCCcEEEE-EEEEEEEE--eCCEEEe
Confidence 433332333 3556 58999999 8999973
No 21
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=7.4e-06 Score=60.79 Aligned_cols=100 Identities=19% Similarity=0.094 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTW 164 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~ 164 (194)
+...++++-.+|+|++|++++..-|++||++..-..---..|.++|+.++..-|.. |+.+..+..-+.-| ..|.=+=
T Consensus 4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~f~a~~~~gg~aaira~y~e~FaE--p~~~~~ll~Rv~vG-s~ViDHE 80 (112)
T COG4538 4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTTFDALDGDGGTAAIRAAYGEQFAE--PAPEISLLDRVSVG-SYVIDHE 80 (112)
T ss_pred chhHHHHHHHHhhccccHHHHHhhcccceEEEecccccccCcHHHHHHHHHHHhcC--CCccceeeeeEEec-cEEecce
Confidence 46789999999999999999999999999988322111234899999988877764 67777776666656 3443355
Q ss_pred EEEe--CCeeEeeeceEEEEEEEeeCCeEE
Q 029353 165 HLEW--KGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 165 ~~e~--~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
|..- .|.++.+ .-+|++ ++|||+
T Consensus 81 hvtr~~g~ge~dv---aciYtv--~~g~Ia 105 (112)
T COG4538 81 HVTRGTGGGERDV---ACIYTV--VEGLIA 105 (112)
T ss_pred eeccCCCCCceeE---EEEEEE--eCCeee
Confidence 5532 2334444 579999 899996
No 22
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=98.40 E-value=1.1e-05 Score=60.08 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC-CCCccCHHHHHHHHHHhhhhcCCCcEEEEEEE-EecCCCeEEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSAVGV 162 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~-~g~~~Greair~~~~~~~~~~~~d~~~~i~~v-ia~G~d~Vav 162 (194)
+.++++.+|..+++.+|++.+.++|+||+++.-+.. .+.+.|+++|++++...+.......++....+ ..+| +.+.+
T Consensus 8 ~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg-d~A~~ 86 (127)
T PF13577_consen 8 AIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG-DTATV 86 (127)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC-CEEEE
Confidence 467788999999999999999999999999997765 45789999999999987654322223322222 2345 56555
Q ss_pred EEEEEe------CCe-eEee-eceEEEEEEEeeCCeEEEC
Q 029353 163 TWHLEW------KGK-PFPF-SKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 163 ~~~~e~------~Gk-~i~~-t~g~~~fr~~~~dGKI~i~ 194 (194)
++.+.. +|. .+.. ....+-|.. .||.++|.
T Consensus 87 ~~~~~~~~~~~~~g~~~~~~~g~y~~~~~r--~~g~W~i~ 124 (127)
T PF13577_consen 87 RSYVLATHRDPDDGEPALWSGGRYTDELVR--EDGGWRIS 124 (127)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEEEEEE--ETTEEEEE
T ss_pred EEEEEEEEEEcCCCceEEEEEEEEEEEEEE--ECCEEEEE
Confidence 555421 243 2222 123444445 79999883
No 23
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=98.30 E-value=6e-06 Score=72.07 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=69.8
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcC-CCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL-IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV 162 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp-~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav 162 (194)
....+++++|.+|+++||++++.+|++||++...+ +...++.|++.+..|+..... .++ +.......+|...+++
T Consensus 174 ~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~--~~~--~~~~~~~~ng~p~~~~ 249 (290)
T PRK09635 174 AQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWS--HPA--TVLVAQPVCGQPAVLA 249 (290)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhc--cCc--eEEEEeeeCCCceEEE
Confidence 34678999999999999999999999999986544 345688999999999986532 243 4445567788555443
Q ss_pred EEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 163 TWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 163 ~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
. .+|+. .++.++++ .||||.
T Consensus 250 ~----~~~~~----~~~~~~~~--~~~~I~ 269 (290)
T PRK09635 250 F----VNRAL----AGVLALSI--EAGKIT 269 (290)
T ss_pred E----eCCce----EEEEEEEE--ECCEEE
Confidence 2 13432 35678888 799986
No 24
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=98.24 E-value=2.1e-05 Score=59.07 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC-CCCccCHHHHHHHHHHhh--hhcCCCcEEEEEEEEecCCCeEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFS--DSISSDLQFVIDDISAEDSSAVG 161 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~-~g~~~Greair~~~~~~~--~~~~~d~~~~i~~via~G~d~Va 161 (194)
..+++|+.|++++..+|.+.|.++|+||+.+....- .......+++.+++..-. .....+....+..+-..| +...
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g-~~A~ 83 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG-DVAS 83 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC-CEEE
Confidence 467899999999999999999999999998763331 123567788888887531 223456777777777777 6666
Q ss_pred EEEEEEeCCeeEeeeceEEEEEEEeeCCeEEEC
Q 029353 162 VTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 162 v~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
++..+++.+..+ . ....+++. ||+++|+
T Consensus 84 a~v~~~~~~~~~-~-d~~~L~K~---dg~WkIv 111 (116)
T PF12893_consen 84 AKVEYEFPGFWF-V-DYFTLVKT---DGGWKIV 111 (116)
T ss_dssp EEEEEEEETEEE-E-EEEEEEEE---TTEEEEE
T ss_pred EEEEEEECCCce-E-EEEEEEEE---CCEEEEE
Confidence 666666555533 2 34555665 9999995
No 25
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=98.08 E-value=0.00011 Score=57.50 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTW 164 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~ 164 (194)
...+-|+.-=++||.+|++.+.-.|++|++|.+-.- -+.|+++|.+|+..-+.. .-+.+. +.++.+-.++.++|++
T Consensus 11 tA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~e--F~~GR~~I~~FLtrKW~r-E~~YrL-iKELwaf~~nRIAVRF 86 (143)
T PF07080_consen 11 TAIQKVRAAEDAWNSRDPEKVALAYTPDSVWRNRDE--FLTGREEIVAFLTRKWER-ELDYRL-IKELWAFTDNRIAVRF 86 (143)
T ss_dssp HHHHHHHHHHHHHTTT-HHHHHTTEEEEEEEEETTE--EE-SHHHHHHHHHHHHHH-SEEEEE-EEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhccccCChhHheeccCCCCcccCccc--ccCcHHHHHHHHHHHHHH-hhhhhh-HHhhhhccCCeEEEEE
Confidence 356678888889999999999999999999997643 578999999999987754 234443 3566665558999999
Q ss_pred EEEe---CCeeEeeeceEEEEEEEeeCCeEE
Q 029353 165 HLEW---KGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 165 ~~e~---~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
..++ .|+-+.- -|-.-++|++ +|..+
T Consensus 87 ~YE~~d~~gqW~Rs-yGnEnWeFd~-~GlM~ 115 (143)
T PF07080_consen 87 AYEWHDDSGQWFRS-YGNENWEFDE-DGLMR 115 (143)
T ss_dssp EEEEE-TTS-EEEE-EEEEEEEE-T-TS-EE
T ss_pred eEEEEcCCCCEEec-ccccccccCC-CccHH
Confidence 8887 3877777 6999999985 88654
No 26
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=98.02 E-value=0.00017 Score=55.99 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEE
Q 029353 82 DDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVG 161 (194)
Q Consensus 82 ~~~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Va 161 (194)
.+.+..++..+|-+++..||.+.+.+.|+||+|.-......+...+.++++||..++.. .|.-.+.-..+...-+...-
T Consensus 35 t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn~vR~s~~ei~DYF~~FLk~-KPqG~IdsR~i~~gcN~AlD 113 (156)
T COG4875 35 TEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSNQVRSSRSEILDYFSHFLKL-KPQGYIDSRKITLGCNNALD 113 (156)
T ss_pred cHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecccccccccCHHHHHHHHHHHhcc-CCcceecceeEEeccccccc
Confidence 44456677788888888999999999999999997444344677899999999998864 45444443322221111111
Q ss_pred E-EEEEEe-CCeeEeeeceEEEEEEEeeCCeEEEC
Q 029353 162 V-TWHLEW-KGKPFPFSKGCSFYKLEVVNGKRQIT 194 (194)
Q Consensus 162 v-~~~~e~-~Gk~i~~t~g~~~fr~~~~dGKI~i~ 194 (194)
. .+++.+ +|+.+.. +....|.+ .||.+.|+
T Consensus 114 ~GtYTF~f~DGs~v~A-RYtftY~w--~~g~WlI~ 145 (156)
T COG4875 114 AGTYTFIFTDGSNVQA-RYTFTYSW--IDGTWLIV 145 (156)
T ss_pred cceEEEEEcCCcceeE-EEEEEEEe--cCCeEEEE
Confidence 1 344443 6888877 78889999 79999985
No 27
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=97.97 E-value=0.00014 Score=54.04 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEec----CCCeEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAE----DSSAVG 161 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~----G~d~Va 161 (194)
....+++||++++++|.+.|.++|++|+.+..+.......|+++|.++|..+-.. ..++.+..+-.. .++.+.
T Consensus 2 ~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~---~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 2 ANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPAT---GVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTS---SEEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCc---ccEEEecccccccccccCCcEE
Confidence 3578999999999999999999998888877665433689999999999975432 124444433222 235555
Q ss_pred EEEEE--EeCCeeEeeeceEEEEEEEeeCCeEEE
Q 029353 162 VTWHL--EWKGKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 162 v~~~~--e~~Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
+..++ ..++.+-.. .....|-+.+.++.+.|
T Consensus 79 i~v~G~~~~~~~~~~~-~F~q~FvL~~~~~~~~I 111 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPR-RFSQTFVLVPQNNGYFI 111 (118)
T ss_dssp EEEEEEEEETTSEEEE-EEEEEEEEEEETTEEEE
T ss_pred EEEEeEEEecCCCccc-EEEEEEEEEEcCCEEEE
Confidence 55555 444443112 24456666545566655
No 28
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=97.54 E-value=0.0017 Score=51.64 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEE----cCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecC-CCeE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYE----DLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED-SSAV 160 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~----dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G-~d~V 160 (194)
|++.|.+|... ...|-=.=-+||++|..-- +.+.|-.+.|++.++++..... ..|||++|....++... .+.+
T Consensus 20 NR~~Ve~Ym~t-~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwsl-kcFPDWeW~nv~ifeT~DP~~f 97 (162)
T PF03284_consen 20 NRATVEQYMNT-KGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSL-KCFPDWEWYNVRIFETQDPNHF 97 (162)
T ss_dssp HHHHHHHHHC---GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHH-HHSTT-EEEEEEEEEBSSTTEE
T ss_pred hHHHHHHHHHc-CchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHH-HHCCCcEEEEEEeecccCCCEE
Confidence 67778887762 2233333457899998754 3344446899999999777554 57899999988887654 3677
Q ss_pred EEEEEEE----eCC---eeEeeeceEEEEEEEeeCCeEEE
Q 029353 161 GVTWHLE----WKG---KPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 161 av~~~~e----~~G---k~i~~t~g~~~fr~~~~dGKI~i 193 (194)
.|+..++ +.| -.++. +.+|-|+| +||||+.
T Consensus 98 wVEcdG~G~i~fpGypeg~y~N-HfiHsFel--~nGkI~~ 134 (162)
T PF03284_consen 98 WVECDGRGKILFPGYPEGYYEN-HFIHSFEL--ENGKIKR 134 (162)
T ss_dssp EEEEEEEEEE--TTS--EEEEE-EEEEEEEE--ETTEEEE
T ss_pred EEEecCccceecCCCCccccee-eeEEEEEe--eCCEEEe
Confidence 7777664 334 35888 89999999 8999985
No 29
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=96.99 E-value=0.039 Score=44.96 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccC--------------------HHHHHHHHHHhh
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLG--------------------RKATLDFFKKFS 138 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~G--------------------reair~~~~~~~ 138 (194)
+..+++-++-..++.+|++.+.+||+||++|..|..+.+..| +..+++.+..+.
T Consensus 21 eI~~~l~~eA~lLD~~d~~~Wl~lft~D~~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~rl~ 94 (183)
T PRK10069 21 EISQFLYREARLLDEWRYDDWLALLAEDIHYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVARLE 94 (183)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHhhccccEEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHHHHh
Confidence 355566666679999999999999999999887654434443 577777777654
No 30
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=96.91 E-value=0.037 Score=43.47 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCC---------------ccCHHHHHHHHHHhhh
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP---------------FLGRKATLDFFKKFSD 139 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~---------------~~Greair~~~~~~~~ 139 (194)
+..+++-+|-.+++.+|++.+.+||++|++|.-|..+.. ..|+..+++.+..+..
T Consensus 5 ~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~ 74 (160)
T cd00667 5 EVEQFLYREARLLDDRRWDEWLALFAEDCHYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRT 74 (160)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHhhccccEEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhc
Confidence 456778888889999999999999999999986654321 2578888887776554
No 31
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=96.91 E-value=0.02 Score=42.93 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEe--cCCCeEEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA--EDSSAVGVT 163 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via--~G~d~Vav~ 163 (194)
..+.|+.||..++ .|.+.|..+|++++.+.... .....|+++|.+++..+-. ...++++..+-+ ..+..+.+.
T Consensus 6 ~~~Fv~~YY~~l~-~~~~~L~~fY~~~s~~~~~~-~~~~~g~~~I~~~l~~lp~---~~~~~~i~~~d~q~~~~~~ili~ 80 (119)
T cd00780 6 AKAFVQQYYSIFD-NNREGLHRLYGDTSMLSREG-MKQVTGRDAIVEKLSSLPF---QKTKHKITTVDSQPTPSGGVIVM 80 (119)
T ss_pred HHHHHHHHHHHHh-cCHHHHHhhcCCCcEEEECC-ceEecCHHHHHHHHHhCCC---cceEEEEEEEeeeEcCCCCEEEE
Confidence 3568999999999 88999999999999988765 2367899999999885321 144555543321 111344444
Q ss_pred EEE--EeC-CeeEeeeceEEEEEEEeeCCeEEE
Q 029353 164 WHL--EWK-GKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 164 ~~~--e~~-Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
.++ ..+ +.+..+ ...|-+.+.+++..|
T Consensus 81 V~G~~~~~~~~~~~F---~q~F~L~~~~~~~~I 110 (119)
T cd00780 81 VTGSLKLDEQPPRKF---SQTFVLAPQNGGYFV 110 (119)
T ss_pred EEEEEEECCCCceeE---eEEEEEEecCCeEEE
Confidence 444 333 444444 344444434566655
No 32
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=96.90 E-value=0.011 Score=42.73 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCc-cCHHHHHHHHHHhhhhcCCCcEEEEEEEEec--CCCeE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF-LGRKATLDFFKKFSDSISSDLQFVIDDISAE--DSSAV 160 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~-~Greair~~~~~~~~~~~~d~~~~i~~via~--G~d~V 160 (194)
..+.++++.||+++..||++.+.+++.++..- .......+ .-...+...+...+... ..+.+..+... | +.+
T Consensus 7 ~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~g-~~A 81 (111)
T PF12870_consen 7 STPEEVVKNFFDALKNGDYEKAYAYLSPESRE-PEKAKEDFEQFEKQFASEMKKKYKKI---GSIKIVEVEENTIG-DTA 81 (111)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHTB--TT---SHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEEEEEEEEES-SEE
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhhCccccc-hhHHHHHHHHHHHHHHHHHHHhhhcc---CceEEEEEEEeccC-CEE
Confidence 45778999999999999999999999988653 10000000 01112222222222221 23444444433 5 777
Q ss_pred EEEEEEEeC-CeeEeeeceEEEEEEEeeCCeEEE
Q 029353 161 GVTWHLEWK-GKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 161 av~~~~e~~-Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
.|.+..++. |+.... -+.+.+- ||+|+|
T Consensus 82 ~V~v~~~~~~g~~~~~--~~~lvk~---dg~Wkv 110 (111)
T PF12870_consen 82 TVTVKITYKDGKEKTF--TVPLVKE---DGKWKV 110 (111)
T ss_dssp EEEEEEEETTS-EEEE--EEEEEEE---TTEEEE
T ss_pred EEEEEEEECCCCeeEE--EEEEEEE---CCEEEe
Confidence 777777654 566544 3455554 999998
No 33
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=96.77 E-value=0.036 Score=42.98 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWH 165 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~ 165 (194)
..++..+|.+|+..+|++.|++||.++-.--.-+.++.+.|.++|++|-..-- ...+.-+..-..+..-|.|...+...
T Consensus 12 v~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~E~LyG~~aI~aFR~~R~-~~~~~R~l~~~~itt~G~d~A~v~te 90 (125)
T PF11533_consen 12 VTAAFDRYERALMANDVDALDALFWDDPRTVRYGAGENLYGHDAIRAFRAARP-GGGPARTLERTVITTFGRDFATVSTE 90 (125)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETTEEEESHHHHHHHHHHS---TTTT-EEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCCccccCHHHHHHHHhcCC-CCCCCcEEEEEEEEEecCceEEEEEE
Confidence 45678888889999999999999987753322233557899999998887431 22333334433444456454444333
Q ss_pred E
Q 029353 166 L 166 (194)
Q Consensus 166 ~ 166 (194)
+
T Consensus 91 f 91 (125)
T PF11533_consen 91 F 91 (125)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=96.26 E-value=0.052 Score=40.99 Aligned_cols=97 Identities=10% Similarity=0.248 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcC-CCcEEEEEEEEecCCCeEEEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS-SDLQFVIDDISAEDSSAVGVTW 164 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~-~d~~~~i~~via~G~d~Vav~~ 164 (194)
..+.+++|+++|+++|.++|.+++.++. ....+++++.+.++.++..+. .++.+....+...+++...+.+
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~--------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~~ 74 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS--------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVPY 74 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH--------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh--------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEEE
Confidence 5689999999999999999999988775 124467778877777776543 3455644444444445555544
Q ss_pred EE--EeC-CeeEeeeceEEEEEEEeeCCeEEE
Q 029353 165 HL--EWK-GKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 165 ~~--e~~-Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
+. +.. |+.+.. -...++..++|.++|
T Consensus 75 ~~~~~t~~g~~~~~---~~~~~l~~~~~~W~V 103 (118)
T PF05223_consen 75 TVTMDTPAGGIWTY---NYTLTLVKEDDDWKV 103 (118)
T ss_dssp EEEEEETTEEE-EE---EEEEEEEEETTCEEE
T ss_pred EEEEEeCCCCceee---EEEEEEEecCCcEEE
Confidence 44 333 544444 233344324666776
No 35
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.84 E-value=0.0096 Score=46.17 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCCCeEEEEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWH 165 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~d~Vav~~~ 165 (194)
..+-|+-.-++||.+|.+.+.-.|++|-.|.+-.- -+.|++.+.+|+..-+..- .+++. |.++.+-++..++|++.
T Consensus 14 a~~kvr~aed~wnsrdp~kv~layt~ds~wrnrae--f~~gre~i~~fl~rkw~re-~~yrl-ikelwaf~gnriavrfa 89 (154)
T COG3558 14 AIQKVRMAEDAWNSRDPAKVALAYTEDSFWRNRAE--FFQGREKIQEFLTRKWDRE-LEYRL-IKELWAFTGNRIAVRFA 89 (154)
T ss_pred HHHHHHHhHhccccCChhheeeeeccchhhhhHHH--HHccHHHHHHHHHhhhhHH-HHHHH-HHHHHhhcCCeEEEEEe
Confidence 44556666779999999999999999999986542 5789999999998765431 22222 23444544489999888
Q ss_pred EEeC---CeeEeeeceEEEEEEE
Q 029353 166 LEWK---GKPFPFSKGCSFYKLE 185 (194)
Q Consensus 166 ~e~~---Gk~i~~t~g~~~fr~~ 185 (194)
.+|. |+-+.. -|-.-|+|+
T Consensus 90 yew~dd~g~wfra-ygnenwefd 111 (154)
T COG3558 90 YEWHDDSGQWFRA-YGNENWEFD 111 (154)
T ss_pred EeeecccchHHHH-hCCcccccc
Confidence 8873 443333 244455554
No 36
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.91 E-value=2.9 Score=32.08 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEE--EecCCCeEEEEE
Q 029353 89 VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI--SAEDSSAVGVTW 164 (194)
Q Consensus 89 vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~v--ia~G~d~Vav~~ 164 (194)
.+..|+.+-.++.+|++..-|++|....-|. |..-.++++-++|+.- .+..|++.+.++++ .+++.|..++.+
T Consensus 15 ai~dWl~~~~adtldal~arfaedftMitP~--GviLD~~Alg~~frs~-racrpGl~I~ie~i~l~a~~~dga~l~Y 89 (130)
T COG4460 15 AIVDWLVAARADTLDALRARFAEDFTMITPS--GVILDRDALGDHFRSS-RACRPGLAISIEDIRLGAQTEDGAVLLY 89 (130)
T ss_pred HHHHHHHhcccccHHHHHHHHhcCceEecCC--ceEeccHHHHHHHHhc-cCCCCCeEEEEecccccccCCCceeeee
Confidence 4556666555777899999999999988764 4788999999999965 34789999998865 344445555533
No 37
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=86.49 E-value=15 Score=29.21 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCC
Q 029353 88 VVVRRFYAGINGRDLASVEELIADDCVYEDLI 119 (194)
Q Consensus 88 ~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~ 119 (194)
+++-++-..+++++++.+.++|++||.|.-|.
T Consensus 3 ~~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~ 34 (155)
T TIGR03231 3 QFLYRKAELCDAQDWDAYLDLFDEDSEFHLPQ 34 (155)
T ss_pred hHHHHHHHHhcccCHHHHHHHhCcCceEEeec
Confidence 45666677999999999999999999998765
No 38
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=84.95 E-value=10 Score=29.77 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHH
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKK 136 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~ 136 (194)
..+.++.||+.++ ..-+++..||-+.+..-+.+. +..|.|.+-.||+.
T Consensus 16 A~eFv~~YY~smD-~rR~~i~rlY~~~atlvWNGn--~v~g~esls~ff~~ 63 (139)
T KOG4353|consen 16 AEEFVNVYYSSMD-KRRRGIGRLYLDNATLVWNGN--PVSGTESLSEFFNM 63 (139)
T ss_pred HHHHHHHHHHHHH-HHHHHhHHHhhccceEEEcCC--cchhHHHHHHHHHh
Confidence 5678999999887 457899999999998776654 67899999999984
No 39
>PLN02382 probable sucrose-phosphatase
Probab=82.67 E-value=13 Score=34.09 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCC-------HHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCC--cEEEEEEEE--ecCCC
Q 029353 90 VRRFYAGINGRD-------LASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD--LQFVIDDIS--AEDSS 158 (194)
Q Consensus 90 Vr~fyeA~n~gD-------~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d--~~~~i~~vi--a~G~d 158 (194)
...+|+.|-+++ ++.+.+.++|++++--|. |....++++.+.|+.... ..|+ +++.++++. ..+.+
T Consensus 290 ~~~~~e~W~~~~~~~~~~~~~~l~~~~~p~~~~v~p~--G~~~~~~~~~~~~~~~~G-~~~g~~~~i~vd~~~~~~~~~~ 366 (413)
T PLN02382 290 FYLFYEKWRRGEVENSDEVFQRLKSSCAPNGVFVHPS--GVEKSLHDSIDELRSCYG-DKKGKKFRVWVDRVLSTQLGPD 366 (413)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhcCCCeeEECCC--cccCCHHHHHHHHHHhhC-CCCCCEEEEEEeeEEEEEEcCC
Confidence 345567888877 788999999999998774 467899999999998765 4677 887776653 33435
Q ss_pred eEEE---EEEEE
Q 029353 159 AVGV---TWHLE 167 (194)
Q Consensus 159 ~Vav---~~~~e 167 (194)
.++| +|...
T Consensus 367 ~~~v~~~e~q~~ 378 (413)
T PLN02382 367 TWLVKFDKWEQS 378 (413)
T ss_pred eEEEEEeeeeec
Confidence 5555 45543
No 40
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=77.54 E-value=34 Score=27.14 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=22.3
Q ss_pred HHHhCCCHHHHHhhhcCCeEEEcCC
Q 029353 95 AGINGRDLASVEELIADDCVYEDLI 119 (194)
Q Consensus 95 eA~n~gD~dal~~L~ApD~v~~dp~ 119 (194)
+.+++++++.+.+||+|||.|.-|.
T Consensus 10 ~LLD~~~~~eWl~L~~eD~~Y~vP~ 34 (155)
T TIGR03232 10 RLLDDEQWDDWLECYRADASFWMPA 34 (155)
T ss_pred HHhhhhhHHHHHHhcccCeEEEEEe
Confidence 4889999999999999999888665
No 41
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=77.30 E-value=32 Score=26.73 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHhCCCHHHHHhhhcCCeEEEcCCCCCC---------------ccCHHHHHHHHHHhhhh----cCCC--cEEEEEE--
Q 029353 95 AGINGRDLASVEELIADDCVYEDLIFPRP---------------FLGRKATLDFFKKFSDS----ISSD--LQFVIDD-- 151 (194)
Q Consensus 95 eA~n~gD~dal~~L~ApD~v~~dp~~~g~---------------~~Greair~~~~~~~~~----~~~d--~~~~i~~-- 151 (194)
..++.++++.+.+||++||.|.-|..... ..++..++.-...+... ..|- .+..+..
T Consensus 4 ~lLD~~~~~eWl~l~~~D~~Y~vp~~~~~~~~~~~~~~~~~~~~~d~~~~L~~RV~rl~~~~~~se~P~srtrh~vsnv~ 83 (145)
T PF00866_consen 4 RLLDERRYDEWLALFTEDCHYWVPARENRDRRDRDPGSEEMLIFDDDRGMLEDRVERLRTGRAWSEDPPSRTRHFVSNVR 83 (145)
T ss_dssp HHHHTT-HHHHHHTEEEEEEEEEEEBGGC-TTGGGGSBTSEEEEEESHHHHHHHHHHHHSTTHGGGSS--EEEEEEEEEE
T ss_pred HHhhhhHHHHHHHHhccCeEEEEEeccCccccccCCCCceEEEEeCCHhHHHHHHHHHhcCCccccCCCceeEEEEcCEE
Confidence 36889999999999999999995543210 25778888777655421 1132 2222222
Q ss_pred EEe-cCCCeEEEEEEE-----EeCCeeEeeeceEEEEEEEeeCCeEEE
Q 029353 152 ISA-EDSSAVGVTWHL-----EWKGKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 152 via-~G~d~Vav~~~~-----e~~Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
+.. ++++.+.|+..+ ...+...-+ -|.-.+++-..+|.++|
T Consensus 84 v~~~~~~~~~~v~s~f~v~r~r~~~~~~~~-~G~~~d~lr~~~~~~ki 130 (145)
T PF00866_consen 84 VEETEDGGEIEVRSNFLVYRSRLDGDQDLF-AGRREDVLRRTDGGLKI 130 (145)
T ss_dssp EEEESSTTEEEEEEEEEEEEEETTTEEEEE-EEEEEEEEEEESSSEEE
T ss_pred EEEecCCCEEEEEEEEEEEEEcCCCcEEEE-EEEEEEEEEEeCCEEEE
Confidence 333 233666664433 112344434 24444444325676777
No 42
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.19 E-value=10 Score=31.22 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=54.6
Q ss_pred hhhcCCeEEEcCCCCCCccCHHHHHHHHHH---hhhhcCCCcEEEEEEEEecC-CCeEEEEEEEEe--------C-----
Q 029353 107 ELIADDCVYEDLIFPRPFLGRKATLDFFKK---FSDSISSDLQFVIDDISAED-SSAVGVTWHLEW--------K----- 169 (194)
Q Consensus 107 ~L~ApD~v~~dp~~~g~~~Greair~~~~~---~~~~~~~d~~~~i~~via~G-~d~Vav~~~~e~--------~----- 169 (194)
.+|.+|+++++..++-...|++.+...+.. +-...++..++++..+...- +-.|-.+|+... +
T Consensus 57 S~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~ 136 (202)
T KOG4457|consen 57 SFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTVRCRWRVKGVSVTRIFMNPRLLR 136 (202)
T ss_pred eeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceEEEEEEEecceEeeeeechHHhh
Confidence 478999999999988778899988765542 11123566778776654322 136666888721 1
Q ss_pred ----CeeEeeeceEEEEEEEeeCCeEE
Q 029353 170 ----GKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 170 ----Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
-+...+-.|-+++.++. ||.|.
T Consensus 137 ~de~~~~~swyDgYSv~yl~~-~GlI~ 162 (202)
T KOG4457|consen 137 FDERMQNLSWYDGYSVLYLDG-NGLIY 162 (202)
T ss_pred HHHHhcccccccceeEEEECC-CceEE
Confidence 12222226889999974 78764
No 43
>PRK00183 hypothetical protein; Provisional
Probab=75.10 E-value=28 Score=28.02 Aligned_cols=89 Identities=10% Similarity=0.062 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEE---e-cCC-Ce
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---A-EDS-SA 159 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~vi---a-~G~-d~ 159 (194)
..++++|.=|.|+.-+|+|-|.+-.||+.. +.. -++++.++.+ +.+|.-.+|+ . ++. +.
T Consensus 29 TaE~LMRSRYsAf~~~~~dYL~~T~hP~~r---~~~-----~~~~i~~~~~--------~~~Wl~LeI~~~~~~~~~~~~ 92 (157)
T PRK00183 29 CAEALMRSRYSAYVLGLVDYLVATTLPAQQ---AGL-----DRAAIAAWSA--------QSTWLGLEVESSEVLGGQPEH 92 (157)
T ss_pred CHHHHHHHHHHHHHhcccchhhhccCcccc---ccc-----chHHHhhccc--------CCEEeceEEEEcccCCCCCce
Confidence 478999999999999999999999999875 111 2344444332 2344443443 2 111 33
Q ss_pred EEEEEEEEe--CCeeEeeeceEEEEEEEeeCCeEE
Q 029353 160 VGVTWHLEW--KGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 160 Vav~~~~e~--~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
-.|++...+ +|+...+ +..+.|+- +||++.
T Consensus 93 g~VeF~A~y~~~g~~~~l-hE~S~F~r--~~g~W~ 124 (157)
T PRK00183 93 AFVTFTARWHDADGEHSH-RERSAFVQ--HQGRWY 124 (157)
T ss_pred EEEEEEEEEecCCCccce-eeeeeeeE--eCCEEE
Confidence 334555533 5777777 78888888 788875
No 44
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=74.35 E-value=11 Score=28.74 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=29.1
Q ss_pred CcEEEEEEEEecCCCeEEEEEEEEeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 144 DLQFVIDDISAEDSSAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 144 d~~~~i~~via~G~d~Vav~~~~e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
.++|.+..+.+-| +.|.++. .+.+..+- -+|+|++ +||+|+
T Consensus 13 sF~F~P~sV~afG-~~ViaEG--~~~~~~~y---WVHaWTV--~dGiIT 53 (109)
T PF07107_consen 13 SFRFVPRSVDAFG-STVIAEG--CDETRSVY---WVHAWTV--KDGIIT 53 (109)
T ss_pred cEEEeccEEEEEC-CEEEEec--ccCcCcEE---EEEEEEe--cCCEEE
Confidence 5788888787777 7777753 22344443 4799999 899986
No 45
>PRK01617 hypothetical protein; Provisional
Probab=74.24 E-value=43 Score=26.76 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEE---ecC-CCe
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---AED-SSA 159 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~vi---a~G-~d~ 159 (194)
....+++|.=|.|+.-+|++-|.+-.|||..- . .-++++.++.+ +.+|.-.+|+ .++ ++.
T Consensus 28 ~taE~LMRSRYsAy~~~~~dYl~~T~hP~~r~---~-----~~~~~i~~~~~--------~~~w~~L~Il~~~~g~~~~~ 91 (154)
T PRK01617 28 PDPEHLMRSRYCAFVMKDADYLIKTWHPDCHA---A-----AWRAEIIAGFA--------NTEWLGLTVFEHTWGDADNE 91 (154)
T ss_pred CCHHHHHHHHHHHHHhcccchhhhcCCCccCc---c-----hhHHHHhhccc--------CCEEeccEEEEecCCCCCce
Confidence 45789999999999999999999999999741 1 12334433322 2334322222 211 123
Q ss_pred EEEEEEE--EeCCeeE--eeeceEEEEEEEeeCCeEEE
Q 029353 160 VGVTWHL--EWKGKPF--PFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 160 Vav~~~~--e~~Gk~i--~~t~g~~~fr~~~~dGKI~i 193 (194)
..|++.. ..+|+.. .+ +..+.|.- +||++.-
T Consensus 92 g~VeF~A~y~~~g~~~~~~~-~ErS~F~r--~~g~W~Y 126 (154)
T PRK01617 92 GFVEFVARFTEGGKTGRTAI-IERSRFLK--ENGQWYY 126 (154)
T ss_pred EEEEEEEEEecCCccccceE-EEeeeeEE--eCCCEEe
Confidence 3344444 3356655 56 57777877 6888753
No 46
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.88 E-value=4.4 Score=32.79 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=24.7
Q ss_pred HHHHHHhCCCHHHHHhhhcCCeEEEcCC
Q 029353 92 RFYAGINGRDLASVEELIADDCVYEDLI 119 (194)
Q Consensus 92 ~fyeA~n~gD~dal~~L~ApD~v~~dp~ 119 (194)
+.-+.++++|++++.++|.++|.|+.|+
T Consensus 16 reA~llDd~dwd~Wla~f~e~~~y~m~~ 43 (164)
T COG5517 16 REAELLDDRDWDAWLAQFDEQAEYWMPP 43 (164)
T ss_pred HHHHHhccccHHHHHHHHHhhheEeCCc
Confidence 3335899999999999999999999777
No 47
>PRK01752 hypothetical protein; Provisional
Probab=59.75 E-value=47 Score=26.68 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEec--C-CCeE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAE--D-SSAV 160 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~--G-~d~V 160 (194)
....++||.=|.|+.-+|+|-|.+-.|||..-. .-++++.++.. +.+|.-.+|+.. + ++.-
T Consensus 31 ~taE~LMRSRYSAy~~~~~dYL~~T~hp~~r~~--------~~~~~~~~~~~--------~~~W~~LeI~~~~~~~~~~g 94 (156)
T PRK01752 31 ETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTL--------LDPAALQTWAE--------NTTWLGLEILAHESLTKIHS 94 (156)
T ss_pred CCHHHHHHHHHHHHHhcccchhhhcCCcccccC--------cCHHHHhcccc--------CCeEeeeEEEeccCCCCceE
Confidence 347899999999999999999999999886431 12344433221 244544444332 1 1333
Q ss_pred EEEEEEEe--CCeeEeeeceEEEEEEEeeCCeEEE
Q 029353 161 GVTWHLEW--KGKPFPFSKGCSFYKLEVVNGKRQI 193 (194)
Q Consensus 161 av~~~~e~--~Gk~i~~t~g~~~fr~~~~dGKI~i 193 (194)
.|++...+ +|+...+ +..+-|+. +||++..
T Consensus 95 ~VeF~A~y~~~g~~~~~-hE~S~F~r--~~g~W~Y 126 (156)
T PRK01752 95 AVEFKAIFQGEEGEQAH-HERSLFVK--IDNRWYF 126 (156)
T ss_pred EEEEEEEEecCCCcccc-chhhhhee--ccCCEEE
Confidence 34555533 5777777 67888888 7888864
No 48
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=56.66 E-value=26 Score=30.72 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHh
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~ 137 (194)
+..+.+.+|.+|+..+|.++|.+++.+|..-.-|+-+ .+++.+.+|++..
T Consensus 6 tPe~Aa~Al~~Av~~~d~~aL~~vLG~~~~~~vp~~~---~d~~~~~~Fl~~w 55 (271)
T PF11453_consen 6 TPEAAADALVDAVATNDEDALAKVLGPDWRDLVPSGG---ADREDRYRFLRAW 55 (271)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCccHHhccCCCC---ccHHHHHHHHHHH
Confidence 3678899999999999999999999999765544432 5788888888853
No 49
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=44.99 E-value=2e+02 Score=26.75 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCC---CccCHHHHHHHHHHhhhhcCCCcEEEEEEEEe
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPR---PFLGRKATLDFFKKFSDSISSDLQFVIDDISA 154 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g---~~~Greair~~~~~~~~~~~~d~~~~i~~via 154 (194)
....|+.||..++ ...+.|..+|.++.++..|...+ .+.|.++|.+.+-.+ -+.+.+++|..+-.
T Consensus 17 g~~Fv~qYY~~L~-~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sl---d~~~~s~eI~tvds 84 (419)
T KOG0116|consen 17 GNEFVRQYYNVLQ-NSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSL---DYEVCSVEISTVDS 84 (419)
T ss_pred HHHHHHHHHHHHh-hChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeec---CCCceeEEEEEEeh
Confidence 5678999999988 68999999999999999887654 378999997766532 35667888766643
No 50
>PRK01842 hypothetical protein; Provisional
Probab=43.67 E-value=1.6e+02 Score=23.48 Aligned_cols=89 Identities=9% Similarity=0.031 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEec---CCCeE
Q 029353 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAE---DSSAV 160 (194)
Q Consensus 84 ~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~---G~d~V 160 (194)
....+++|.=|.|+.-+|++-|.+-.+||..-. .+ -.+++.+. +.+|.-.+|+.. +++.-
T Consensus 47 ~TAE~LMRSRYSAy~l~~~dYL~~T~hP~~r~~--~~-----~~~~~~~~----------~~~WlgLeI~~~~~~~~~~G 109 (149)
T PRK01842 47 PTALELMRSRYSAYVLGATDYLRATWDPSTCPA--DL-----DADPAAAD----------APRWLGLAIKRHAQLDATHA 109 (149)
T ss_pred CCHHHHHHHHHHHHHhcccchhhhccCcccCcc--cc-----Chhhhhcc----------CCEecceEEEEccCCCCceE
Confidence 447899999999999999999999999996311 11 22222211 233332223222 11333
Q ss_pred EEEEEEE--eCCeeEeeeceEEEEEEEee-CCeEE
Q 029353 161 GVTWHLE--WKGKPFPFSKGCSFYKLEVV-NGKRQ 192 (194)
Q Consensus 161 av~~~~e--~~Gk~i~~t~g~~~fr~~~~-dGKI~ 192 (194)
.|++... .+|+...+ +-.+.|+- + ||++.
T Consensus 110 ~VeF~A~y~~~g~~~~l-hErS~F~r--~~~G~W~ 141 (149)
T PRK01842 110 EVEFVARYKVGGRAHRL-HETSRFVR--DEQGRWR 141 (149)
T ss_pred EEEEEEEEecCCCeEEE-EEeeeeEE--CCCCeEE
Confidence 3455443 35777777 67777777 5 78875
No 51
>PRK02250 hypothetical protein; Provisional
Probab=39.75 E-value=1.6e+02 Score=23.66 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecCC-CeEEEE
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS-SAVGVT 163 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G~-d~Vav~ 163 (194)
...++++.-|.|+.-+|++-|.+-.+|+..- ..-++.+.++.. ..+- ..+|.....++. +...|+
T Consensus 28 TpE~LMRSRYsAyv~g~~~Yl~~T~hP~~r~--------~~~~e~i~~~~~----~~w~--~LeI~~~~~g~~~~~g~Ve 93 (166)
T PRK02250 28 TPEQLMRSRYSAHVLGLVDYVVETYHPSCNA--------EEQREGIAESIH----SDWL--KLEVIKTEAGSTPNEGFVE 93 (166)
T ss_pred ChhhcchhHhHHHHhcccceeecccCcccCC--------hhhHHHHhhhhh----ceee--ccEEEEecCCCCCceEEEE
Confidence 3668999999999999998888777777431 112233333221 1222 234433322221 333345
Q ss_pred EEE--EeCCeeEeeeceEEEEEEEeeCCeEE
Q 029353 164 WHL--EWKGKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 164 ~~~--e~~Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
+.. ..+|+...+ +..+-|+- +||++.
T Consensus 94 F~A~y~~~g~~~~~-~E~S~F~r--~~g~W~ 121 (166)
T PRK02250 94 FKAYFDEEGKRYCL-EERSRFLK--ENGLWY 121 (166)
T ss_pred EEEEEecCCCEEEE-EEEEEEEe--eCCEEE
Confidence 544 345777777 67787877 688875
No 52
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=38.84 E-value=17 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCe
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDC 113 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~ 113 (194)
.++++....+||.++|++.|..+++|++
T Consensus 24 ak~~f~~i~~A~~~~D~~~l~~~~t~~~ 51 (147)
T PF04280_consen 24 AKEAFLPIQEAWAKGDLEALRPLLTEEL 51 (147)
T ss_dssp HHHTHHHHHHHHHHT-HHHHHHHB-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCHHH
Confidence 4455666667999999999999998874
No 53
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.22 E-value=76 Score=30.72 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYE 116 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~ 116 (194)
..+.++.||..|+.+|-+.+...|+|+..|.
T Consensus 341 V~~Fl~~y~~~yD~~d~q~~~~~y~dns~FS 371 (585)
T KOG3763|consen 341 VLQFLQQYYKIYDNNDGQLLLYAYHDNSTFS 371 (585)
T ss_pred HHHHHHHHHHhhcCchhhhHHhhcCccceeE
Confidence 3556788888999999999999999999887
No 54
>PF15063 TC1: Thyroid cancer protein 1
Probab=33.69 E-value=23 Score=25.30 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=14.0
Q ss_pred ccccccCCccccCCCCc
Q 029353 3 MTSSISSSSLRTSPSSL 19 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (194)
|++.+++.|+|.+|+..
T Consensus 1 ~~~~~~~~S~~v~Ps~~ 17 (79)
T PF15063_consen 1 MSSYATSASVRVSPSVH 17 (79)
T ss_pred CCCccCCcceeccCCCC
Confidence 78888899999888754
No 55
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.31 E-value=1e+02 Score=23.90 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHH
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKK 136 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~ 136 (194)
..+.++.||.-|+ .|...+.++|-+.-.....+. .+.|+++|.+=+..
T Consensus 10 ~~~FvqhYY~~FD-~dR~ql~~lY~~~S~LTfEGq--q~qG~~~IveKl~s 57 (126)
T KOG2104|consen 10 AKAFVQHYYSLFD-NDRSQLGALYIDTSMLTFEGQ--QIQGKDAIVEKLTS 57 (126)
T ss_pred HHHHHHHHHHHhc-CchhHhhhhhcccceeeEcch--hhcchHHHHHHHhc
Confidence 4668999999999 677779999999865554433 67899999876664
No 56
>COG2346 Truncated hemoglobins [General function prediction only]
Probab=31.05 E-value=97 Score=24.29 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccC-HHHHHHHHHHhhhh
Q 029353 81 GDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLG-RKATLDFFKKFSDS 140 (194)
Q Consensus 81 ~~~~~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~G-reair~~~~~~~~~ 140 (194)
+++.....+|.+||+.+...+.=+ |.++....| .+..++|+.+++..
T Consensus 14 Gg~~~i~~Lv~~FY~rV~~d~~l~-------------piF~~dl~~~~~k~~afl~~f~gG 61 (133)
T COG2346 14 GGDETIDLLVERFYERVLEDPRLG-------------PIFPADLAGTWPKQKAFLTQFWGG 61 (133)
T ss_pred CchhHHHHHHHHHHHHHhcCcccc-------------ccCCCccccchHHHHHHHHHHhcC
Confidence 344478889999999776554322 444444545 67788888887753
No 57
>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis. It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.
Probab=26.04 E-value=73 Score=25.80 Aligned_cols=50 Identities=4% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcC-CCCC--CccCHHHHHHHHH
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDL-IFPR--PFLGRKATLDFFK 135 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp-~~~g--~~~Greair~~~~ 135 (194)
..+++.+|-+.++.+|++.|.+++||.++..=- ..+. .---.+++.+++.
T Consensus 10 ~~~~~feWAdsYD~KDW~RL~~~lAPtl~vDY~~v~~~~we~m~a~eFvam~s 62 (160)
T PF02982_consen 10 CQAAAFEWADSYDTKDWDRLRKILAPTLRVDYRSVLGKLWEAMPADEFVAMAS 62 (160)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHTTEEEEEEEEEHHHHSEEEEEEEHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccHHHHHHhhCCeEEEEHHHhhhhHHhhCCHHHHHHHHc
Confidence 345677788899999999999999999986511 1110 2234678888776
No 58
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=25.52 E-value=48 Score=29.54 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhh
Q 029353 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFS 138 (194)
Q Consensus 85 ~~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~ 138 (194)
...++|++|+..++.|.+ ..=+++||++. .++.-+.|..+|..|++.-+
T Consensus 10 tp~evi~~Fi~~vddG~i---RrdLaeDCILS--~~gR~VrGa~AVTGflRtQl 58 (334)
T PF06020_consen 10 TPSEVIHEFIQGVDDGTI---RRDLAEDCILS--FYGRNVRGAKAVTGFLRTQL 58 (334)
T ss_pred CHHHHHHHHHhhcCcccH---hhhhhhhHhHH--HhccccccchhhHHHHHHHH
Confidence 467899999999988875 45578999885 34556788889888887644
No 59
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65 E-value=3e+02 Score=22.09 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCCccCHHHHHHHHHHhhhhcCCCcEEEEEEEEecC-CCeEEEEE
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED-SSAVGVTW 164 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~ApD~v~~dp~~~g~~~Greair~~~~~~~~~~~~d~~~~i~~via~G-~d~Vav~~ 164 (194)
..+++|.=|.|+.-+|++-|.+-.+|++.- ..-++++.+++.. ..+ +..+|......+ .+...|++
T Consensus 30 ~e~LMRSRy~Ayvlkn~dYli~TwhPs~qa--------~~~~~~l~~~~~~---t~w--lGL~I~~h~~~~~~~~~~VeF 96 (151)
T COG3012 30 PEALMRSRYCAYVLKNADYLIKTWHPSCQA--------ALDRAELIAGFAH---TEW--LGLTIIEHTGLGAPNHGFVEF 96 (151)
T ss_pred HHHHHHHHHHHHHhcCchheeeccCCcccc--------ccchhHhhccccc---ceE--eeEEEEEeccCCCCcceeEEE
Confidence 788999999999999999999988888432 2245666665442 112 223333322222 34555666
Q ss_pred EEEeC--CeeEeeeceEEEEEEEeeCCeEE
Q 029353 165 HLEWK--GKPFPFSKGCSFYKLEVVNGKRQ 192 (194)
Q Consensus 165 ~~e~~--Gk~i~~t~g~~~fr~~~~dGKI~ 192 (194)
...++ |+.-.. +..+.|.- .||++.
T Consensus 97 ~A~f~~~~~~~a~-~ErSrFvk--~ngrWy 123 (151)
T COG3012 97 VARFKGGGKTGAH-HERSRFVK--INGRWY 123 (151)
T ss_pred EEEEccCCccchh-hhhhhheE--ECCEEE
Confidence 66554 333333 34444443 466664
No 60
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=1.5e+02 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcC
Q 029353 86 GAVVVRRFYAGINGRDLASVEELIAD 111 (194)
Q Consensus 86 ~~~vVr~fyeA~n~gD~dal~~L~Ap 111 (194)
.+..|+.|.+++..||.|...++|..
T Consensus 28 ~rT~iKk~~~ai~~gd~~~A~~~l~~ 53 (88)
T COG0268 28 LRTAIKKVEAAIEAGDKEAAKAALKE 53 (88)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56789999999999999988887754
No 61
>PRK13720 modulator of post-segregation killing protein; Provisional
Probab=20.37 E-value=35 Score=23.44 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=9.0
Q ss_pred CCCcccccccce
Q 029353 16 PSSLLPCLNQTT 27 (194)
Q Consensus 16 ~~~~~~~~~~~~ 27 (194)
-.||+||..|-.
T Consensus 6 QdsLLP~~~QGe 17 (70)
T PRK13720 6 QDSLLPRFAQGE 17 (70)
T ss_pred hccccchhhcCc
Confidence 358899998754
Done!