BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029354
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKL 137
I V FV +G E I+ G S+L+ AH N+I+LEGACEGS+ACSTCHVIV D ++Y L
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIV-DPEHYELL 62
Query: 138 EDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ P ++E DMLDLAFGL ETSRLGCQ++ +LDGIR+ IP
Sbjct: 63 DPPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVM 129
+ +D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I
Sbjct: 2 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 61
Query: 130 DMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
D Y KL+ TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P
Sbjct: 62 DH-IYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVP 109
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDM 131
+D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I D
Sbjct: 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDH 61
Query: 132 DYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
Y KL+ TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P
Sbjct: 62 -IYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVP 107
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDM 131
+D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I D
Sbjct: 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDH 61
Query: 132 DYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
Y KL+ TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P
Sbjct: 62 -IYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVP 107
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVM 129
+ +D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I
Sbjct: 1 SSSEDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-F 59
Query: 130 DMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRN 183
+ + KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P A +
Sbjct: 60 EQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMD 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 3 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQH 61
Query: 133 YYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRN 183
+ KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P A +
Sbjct: 62 IFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 112
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMD 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQH 62
Query: 133 YYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRN 183
+ KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P A +
Sbjct: 63 IFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMD 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQH 62
Query: 133 YYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRN 183
+ KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P A +
Sbjct: 63 IFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYY 134
D++NV FVD+ G+ + VG ++L A + ++LEGACE SLACSTCHV V + D+
Sbjct: 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSE-DHL 61
Query: 135 NKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATR 182
+ L P + E+DMLD+A L E SRLGCQIV +PEL+G +P TR
Sbjct: 62 DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMDY 133
D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 5 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQHI 63
Query: 134 YNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P
Sbjct: 64 FEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMD 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQH 59
Query: 133 YYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ KLE TDEENDMLDLA+GLT+ SRLGCQI + +D + + +P
Sbjct: 60 IFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 105
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMD 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I +
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI-FEQH 59
Query: 133 YYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ KLE TDEENDMLD A+GLT+ SRLGCQI + +D + + +P
Sbjct: 60 IFEKLEAITDEENDMLDCAYGLTDRSRLGCQISLTKAMDNMTVRVP 105
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 68
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 99 SMLEAAHENDIELEG--ACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156
S+L+ EN+++++G ACEG+LACSTCH+I D Y KL+ TDEENDMLDLA+GLT+
Sbjct: 1 SLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDH-IYEKLDAITDEENDMLDLAYGLTD 59
Query: 157 TSRLGCQI 164
SRLGCQI
Sbjct: 60 RSRLGCQI 67
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYN 135
M + FVD GE + ++V G +++EAA N I +E C G+ AC+TCHV V D +
Sbjct: 21 MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYV-DEAWRE 79
Query: 136 KLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATR 182
K+ P+ E DMLD + + SRL CQI S ELDG+ + P R
Sbjct: 80 KVGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLD-LAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ + L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLESVTAELKPNSRLSCQIIMTPELDGIVVDVP 102
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLDLAFG-LTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLECVTAELKPNSRLSCQIIMTPELDGIVVDVP 102
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLDLAFG-LTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLDLAFG-LTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLD-LAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ + L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLEGVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V + + +K+
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVP 61
Query: 139 DPTDEENDMLD-LAFGLTETSRLGCQIVASPELDGIRLAIP 178
+ E ML+ + L SRL CQI+ +PELDGI + +P
Sbjct: 62 AANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 97 GMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156
G ++L+AA N IE+E ACE S AC+TCH IV + ++ L + +++E+DMLD A+GL
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCIV--REGFDSLPESSEQEDDMLDKAWGLEP 81
Query: 157 TSRLGCQIVASPELDGIRLAIPAATRNFA 185
SRL CQ + E + + IP T N A
Sbjct: 82 ESRLSCQARVTDE--DLVVEIPRYTINHA 108
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKL 137
+ F++ +G ++ G++++EAA +N + ++ C G+ ACSTCH V D + +KL
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYV-DPAWVDKL 60
Query: 138 EDPTDEENDMLDLAFGLT-ETSRLGCQIVASPELDGIRLAIP 178
E DM+D A+ TSRL CQI + LDG+ + +P
Sbjct: 61 PKALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLP 102
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 80 VTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNK 136
VTF+ + E ++V G ++LE AH++ IE+E AC G AC+TCH IV ++
Sbjct: 4 VTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV--RKGFDS 61
Query: 137 LEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRNFAVDG 188
LE+ + E DMLD A+GL SRLGCQ+ + E + + IP + N A +
Sbjct: 62 LEEADELEEDMLDKAWGLEAQSRLGCQVFVADE--DLTIEIPKYSLNHAAEA 111
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDMDYYNKLE 138
+ +DG I+ G+S++EA + I EL C G +C+TCHV+V + ++L
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPA-FADRLP 61
Query: 139 DPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAI 177
+ +END+LD + T SRL CQI + +L+G+ + I
Sbjct: 62 ALSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEI 100
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLE 138
V F+D+ E + G S++E A +N + + C GS C+TC + + D + +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDA-WVEIVG 61
Query: 139 DPTDEENDML-DLAFGLTETSRLGCQIVASPELDG--IRLAIPA 179
+ +END+L +T +RL CQ+ P +DG +R+ +PA
Sbjct: 62 EANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVPLPA 105
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLE 138
N+T DGE+K I+ +L+A+ ++EL +C G +CSTC +++ + N +
Sbjct: 4 NITLRTNDGEKK-IECNEDEYILDASERQNVELPYSCRGG-SCSTCAAKLVEGEVDNDDQ 61
Query: 139 DPTDEE 144
DEE
Sbjct: 62 SYLDEE 67
>pdb|3LFK|A Chain A, A Reported Archaeal Mechanosensitive Channel Is A
Structural Homolog Of Marr-Like Transcriptional
Regulators
pdb|3LFK|B Chain B, A Reported Archaeal Mechanosensitive Channel Is A
Structural Homolog Of Marr-Like Transcriptional
Regulators
pdb|3LFK|C Chain C, A Reported Archaeal Mechanosensitive Channel Is A
Structural Homolog Of Marr-Like Transcriptional
Regulators
pdb|3LFK|D Chain D, A Reported Archaeal Mechanosensitive Channel Is A
Structural Homolog Of Marr-Like Transcriptional
Regulators
Length = 129
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 137 LEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAI 177
L+DP +++D F L + RLG +IV + E + + AI
Sbjct: 63 LKDPESVLKNLMDYGFALEDKERLGEKIVLTSEGEFVAQAI 103
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 88 EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMD----MDYYNKLE 138
++K + + +++EA + I ++ C G+ C C V V+D ++ Y KL+
Sbjct: 11 DQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLK 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,734,352
Number of Sequences: 62578
Number of extensions: 225524
Number of successful extensions: 507
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 29
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)